>input_sequence_50324
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---------------------------------------------------------ACTGACTCAGTTTATCAGACCCA
TTCGTGTCTCGAGGATTCATTCCCGTCAAGAAGTGCATCCGAGTTCCGGGTCAATGGCTGGCCGCCGGCGACGACAGCGC
AGCAAGAACAAGCACAAGACAGCGTCGAGGAGCGAC---ATCCCGTCAGGGCCAACGACCGTCCACCAAGTCCCCGACCA
CCTCCTCGAGCTCGT--------------GCTCC--------------TCCGGGTTGGCTCTTCCGTCGCCCTCGTCCGA
GCCGCCTTCACCTGCAAGCGCTGGCGCCGCCTCGTCGCGGACACCGCATTCCTGGCCCGGTTCCGCTCCCTCCACGCAGC
CCACGTCGCCGGTCACTACCACGTCGTCGACCGGCCCTACCGCGAGAAGCTGCCGCCCGACGGGAA---CAACCAGAACC
AGGTGTTCGTGCCAGACCCCTCGGCTGCCGACGCCATCGACAGACGCCACTTCTCCCTCGATTTCCTCCCGGAATGCGAT
GACTCCTCGTCCTGGGAGCTCGCCGACAGCCGCGGC--------------------------------------------
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AGCCTCCTTCTCTTTTACAGGGCGAGAACAAACTGGACGGG------------------------GCGGCTTCGCTTCCC
GGACCTCGTCGTCTGCGAGCCGCTCTCGCGGCGGTACCAGGGGATCGCCTACCCGCCGGCGATGCGTCTCCACCTGTGCT
TCGGCGCGTTCCTGCTCGACGGTGGCGCCGTCGACGAGACG---GGTGGCTGCATCGGCATGTCAAACTTCCGGGTGATC
GTCGCGGTCTACGAATACGTCGCGC------ATGCCCGTGCCGCACCCCGGGCCTGCGTGTTCTCCTCGGGCGCCGACGG
CGGTTGGAGCTTGAGGCAGCGCGCGGCCGGCAGCGGCAGCGGCGGCGTCCCCCTCTCGTGGTTTGGCTTGATCAATTTTG
TAGGGCGCACGCGCTGGTCGCTATACTGGACGATGGAGCGCGACGGCGCCGTGCTCTCTCTCGACGAGTCCACCCTGGAG
TTCTCGCTCGCCATGTTCCCGGATGCCGTCGTGGGGTGGCGGGACGAGTTGTCCACCTTCTGGGTCATCGGCGGCGAGGA
CGGCGCGGTGCGCGTCGTCCGCATGA---TCAACAGAGACCTCACGGTCTTTGCGCAGCTCCAGGGCGGCGGCGAGTGGG
TGACGGAGAAGGTCGTGAGGCTGCGGCCGGCCGACATTGTCGCGGCCAACGAGAGGTATGTCCTCTTGACGCCGAGGGGG
CAGACCTGCCTTTTCTCCGTCGAGCTCGACACGCTGCAGGCGGAGAGCACGCACGAGAGGAACAGGTACGCGGGAGCGGC
GTACCCGTACGAGCTGCCCTGGCCACCGGTCTTGCAGGCCTGCTGTGCTGCCGATGACACGCGCCGAAGGAGATACCGCT
GATGTATTATGGAAATTTGTGCAGTGTACTTTACCAGAGTGTTGGAAACGAGAGTTTTGGAAATGCTTCACGATGTATTG
ATCGGTGCATAACGCACGTATATATAAAGTACAAAGTAAAAAGAAAATAAT-----------------------------
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>chr5A_1_TraesCS5A01G183500
TCCTAAGGCCACCAGAGACGAGATGGACCGGCGGCGGCGCCGACGGAAGAAAAAGGAACCCTAAGTTTTTCTTGGGAAGG
AGGCTTTTTGTCTGAATACCTTTTATGCAAGTCCACTAATTTTTAACTGGGCTAGTTATAAGTCCACCCTTGATTTGCAG
CTAGACTCAATGTTTCTTTTGGTTTCGCAACTGACTCCAACTCTTTTTTGCATAAAGTCCACCCTTAACTTGCAATTGTA
ATTTTTTTTGCCTCAGTTGCATGTCTACCATCGACTCGAAGTTAGGGGTTGACTTTTCTCGGTTGCAAGTCAACCGTCAT
CTCACGACTTAGTCTGACCCTTTTTTTATCTCAGTCAAGTCAACCATCGACACGCACCCGAGACCGTCTTTTTTTATTCT
GGTTGTCTACTATAACAAGTTTGGCTCGACCTTCGTGAGGGAGGGCGATGAGGCCGACGCGCCTTCGGCTAACTCCAGTG
CTTGTAGTCTCCGCTAGGTGGTCTATGAACAGGGTCACATGGATGTAATTTTTGTATTCCTGTGTTCTTTGTACTGCCAT
AACATTAATATTAATAGATCGAATCTTTTCTCGCAAAAGAAAGGAATAAAACTTATACATGTAAAAACAGGCATAAATTT
CACTAAATGGGTAAGCTGACGAAATCCTTATTAAATGGGGTAAC-TGATGTTTCATGTGTCAAACTACGCGTATGGGTAC
C--------CTGCAAAATAAAATAAAAACTACGCGTATACGGGTAAAAAATGAAGTTGACTCGCCACTGCGCCAAGATTT
TTTTTTTTTTGAGGGTACCACTGCGCCAAGATTGAAGTAAACTTTATTCTAGCTCCCTGTGGCGCGGCGCCAGCAT----
----AGTGCTCAGTTCCGTGGGAGGCAAGTAGCATGATCTTTAGAAAATGAAGGTTCCGTGAGTGGCACGAATGCATATG
CTCCAAATCGCATCGCTTGAGTGTATTAAACCGTCAGCAGCTCGTTTTATGCTGCTCACTGACTCAGTTTATCAGACCCA
TTCGTGTCTCGAGGATTCATTCCCGTCAAGAAGTGCATCCGAGTTCCGGGTCAATGGCTGGCCGCCGGCGACGACAGCGC
AGCAAGAACAAGCACAAGACAGCGTCGAGGAGCGAC---ATCCCGTCAGGGCCAACGACCGTCCACCAAGTCCCCGACCA
CCTCCTCGAGCTCGT--------------GCTCC--------------TCCGGGTTGGCTCTTCCGTCGCCCTCGTCCGA
GCCGCCTTCACCTGCAAGCGCTGGCGCCGCCTCGTCGCGGACACCGCATTCCTGGCCCGGTTCCGCTCCCTCCACGCAGC
CCACGTCGCCGGTCACTACCACGTCGTCGACCGGCCCTACCGCGAGAAGCTGCCGCCCGACGGGAA---CAACCAGAACC
AGGTGTTCGTGCCAGACCCCTCGGCTGCCGACGCCATCGACAGACGCCACTTCTCCCTCGATTTCCTCCCGGAATGCGAT
GACTCCTCGTCCTGGGAGCTCGCCGACAGCCGCGGC--------------------------------------------
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AGCCTCCTTCTCTTTTACAGGGCGAGAACAAACTGGACGGG------------------------GCGGCTTCGCTTCCC
GGACCTCGTCGTCTGCGAGCCGCTCTCGCGGCGGTACCAGGGGATCGCCTACCCGCCGGCGATGCGTCTCCACCTGTGCT
TCGGCGCGTTCCTGCTCGACGGTGGCGCCGTCGACGAGACG---GGTGGCTGCATCGGCATGTCAAACTTCCGGGTGATC
GTCGCGGTCTACGAATACGTCGCGC------ATGCCCGTGCCGCACCCCGGGCCTGCGTGTTCTCCTCGGGCGCCGACGG
CGGTTGGAGCTTGAGGCAGCGCGCGGCCGGCAGCGGCAGCGGCGGCGTCCCCCTCTCGTGGTTTGGCTTGATCAATTTTG
TAGGGCGCACGCGCTGGTCGCTATACTGGACGATGGAGCGCGACGGCGCCGTGCTCTCTCTCGACGAGTCCACCCTGGAG
TTCTCGCTCGCCATGTTCCCGGATGCCGTCGTGGGGTGGCGGGACGAGTTGTCCACCTTCTGGGTCATCGGCGGCGAGGA
CGGCGCGGTGCGCGTCGTCCGCATGA---TCAACAGAGACCTCACGGTCTTTGCGCAGCTCCAGGGCGGCGGCGAGTGGG
TGACGGAGAAGGTCGTGAGGCTGCGGCCGGCCGACATTGTCGCGGCCAACGAGAGGTATGTCCTCTTGACGCCGAGGGGG
CAGACCTGCCTTTTCTCCGTCGAGCTCGACACGCTGCAGGCGGAGAGCACGCACGAGAGGAACAGGTACGCGGGAGCGGC
GTACCCGTACGAGCTGCCCTGGCCACCGGTCTTGCAGGCCTGCTGTGCTGCCGATGACACGCGCCGAAGGAGATACCGCT
GATGTATTATGGAAATTTGTGCAGTGTACTTTACCAGAGTGTTGGAAACGAGAGTTTTGGAAATGCTTCACGATGTATTG
ATCGGTGCATAACGCACGTATATATAAAGTACAAAGTAAAAAGAAAATAATGCTATGTAGGTTTAGCGGGGTTTTACATG
TAGGTGGGTTTTGATTGAAGATTAAGAAAAAGGGTTCACTGAGAATTAGTGATGTCTCAGTCGACAGGATTAATCATACG
ATTTGATTGATCTGTATTTGTCTCTGATGTATTCTCGTTGTTCAAAACCTATTGTACCTTCCGCTACGTGGGCCGTGGGC
TACGGTTTGTGGTCCTTCTTATTTTTTTTCCTGT-TTTATTTATTTATTTTCTTAATAGATATCCCACGTAAATATTTAG
TGTTTTCTTTCTTCTTTTTTCTGT-TAGGCTTGTGTGTACAGAAATAAGATACGCGTACTTATCTGGCTTTTTTCCTTC-
------TTTATCATTTATTTTTTATTTTATCTTTTTGTATACTTTTTTTTATATGTTTTATTTGTCTGTTTTTACTTCTA
CTTCTACC-TTTTTCTATTTTTATCATTCATCTTTGGAAGATTTAAGTAAGATATATC------TTGACACGAATGAACA
ATTTTTATTCTCACTTTTTGTTGTTGTCTTTTCTATGTGTTTTTTGTTTTAATTTTATTTTGTCGGAGGGGGTGGCGGGA
GAAGGGGCGGCCA--TTTGCATGTCCGACACTAGGCATGCAACTGCAAGTGTCACCCCCGACCGCAACCTCATCTCTTTT
AAAATGACTGTAACTGGACTTTTTTGTTCTGTCGGAGGGGGCGGGT----------------------------------
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---------------------------CAGTTGCAAGCCCGACAACAGCCCCACAACTTCATGTCCCCCAACATGGTTGC
AACTCAACTTTCGTTTTTTGTAGGGGGCGTCGGGAAAGGGGACATGCCAAATGCAAGCCCGACAACAGTCTCGTAACTGC
AAGTGGCGCACCAGACCGCAACTGCATGTCCCTCAGCATGGTTGCTGTGACGCCCGGGTAATTAAGCTACAGTGATCCTC
TGCTAATGGTGCCACGTCACCTCGTTTATAGTTGCTGATCTCGAGTTAGTTCGAAACCGATTCAAATTCAAATTCAAAAA
TAGGCAAACA
>chr5B_621
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------------------------------------------------------------GTAAAAACAGGCACAAATTT
CACTGGATGGGCAAACTGATGAAATTCTTATTAAATGGGATAATTTGATGTTCCATGTGTCAAACTACGCGTACGGGTAC
CCTGCAAAACTGCAAACTAAAATAAAAACTACGCGTA--CGGGTAAAAAATGAAGTTGACTCGCCATTGTGCCAAGATT-
---------------------------------GAAGTAAACTTTATTCTAGCTTCCTGTGGCGCGGCGCCAGCATTGCG
ACCAAGTGTTAAGTTCCGTGGGAGGCAAGTTGCACGATCTTTAGAAAATGAAGGTTCCGTGAGTGGCACGAATGCATATG
CTCCAAATCGCATCGCTTGAGTGTATTAAACCGTCAGCAGCTCGTTTTATGCTGCTCACTGACTCAGTTTATCAGACCCA
TTTTTGTCTCGAGGATTCATTCCCGTCAAGAAGTGCATCCGACTTCCGGGTCAATGGCTGGCCGCCGGCGAGGACAGCGC
AGCAAAAACAAGCTCAAGACAGCGTCGAGGAGCGAC---ATCCCGTCAGGGCCGACAACCGTCCACCAAATCCCCGATCA
CCTCCTCGAGCTCGT--------------GCTCCTCCGCGTCGGCTCTTCCG--------------TCGCCCTCGTCCGA
GCCGCCTTCACCTGTAAGCGCTGGCTCCGCCTTGTCGCGGACACCTCATTCCTGGCCCGGTTCCGCTCCCTCCACGCAGC
CCACGTCGCCGGTCACTACCACGTCGTCGACCGGCCCTACCGCGAGAAGCTGCCGCCCGACGGGAA---CAACCAG----
--GTGTTCGTGCCAGACCCCACGGCTGCCGACGCCATCGACAGACGCCACTTCTCCCTCGATTTCCTCCCGGAATGCGAT
GGCTCCTCGTCCTGGGAGCTCGCCGACAGCCGCGGC--------------------------------------------
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AGCCTCCTCCTCTTTTACAGGGCGAGAACAGACTGGACGGG------------------------GCAGCTTCGCTTCCC
GGACCTCGTCGTCTGCGAGCCGCTCTCGCGACGGTACCAGGGGATCGCCTACCCGCCGGCGATGCGTGGCCACCTGTGCT
TCGGCGCGTTCCTGCTCGACGGCAGCGCCGTCGACGAGACG---GGTGGCTGCAACGGCATGTCAAACTTCCGGGTGATC
GTCGCGGTCTACGAATACGTCGCGC------ATGCCCGTGCCGCACCCCGGGCCTGCGTGTTCTCCTCGGGCGCCGACGG
CGGTTGGAGCTTGGGGCAGCGCGCGGC------CGGCAGCGGCGGCGTCCCCCTCTCGTGGTTTGGCTTAATCAATTTCG
TAGGGCGCACGCGCTGGTCGCTCTACTGGACGATGGAGCGCGACGGCGTCGTGCTCTCTCTCGATGAGTCCACCCTGGAG
TTCTCGCTCGTCATGTTCCCGGATGCCGTCGTGGGGTGGCGGGACGAGTTGTCAACCTTCTGGGTCATCGGCGGCGAAGA
CGGCGCGGTGCGCGTCGTCCGCATGA---TCAACAGAGACCTCACGGTCTTTGCGCAGCTCCAGGGCAGCGGCGAGTGGG
TGACGGAGAAGGTCGTGAGGCTGCGGCCAGCCGACATTGTCGCGGCCAATGAGAGGTACATCCTCTTGACGCCCAGGGGG
GAGACCTGCCTTTTCTCCGTCGAGCTCGACACGCTGCAGACGGAGAGCACGCACGAGAGGAATAGGTACGCGGGAGCGGC
GTACCCGTACGAGCTGCCCTGGCCACCGGTCCTGCAGGCTTGCTGTGCTGCCGATGACCGGCGCCGAAGGAGATGCCGCT
GATGTATTTATG--------------------------------------------------------------------
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>chr5D_825
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---------------------------------GAAGTAAACTTTATTCTAGCTCCGTGTGGCGCGGCGCCAGCGTTGCG
ACCAAGTGTTAAGTTCCGTGGGAGGCAAGTTGCACGATCTTTAGAAAATGAAGGTTCCGTGAGTGGCACGAATGCGTATG
CTCCAAATCGAATCGCTTGAGTGTATTAAACCGTCAGCAGCTCGTTTTATGCTGCTCACTGACTCAGTATAGCAGACCCA
TTCGTGTCTCGAGGATTCATTCCCGTCAAGAAGTGCATCCGAGTTCCGGGTCAATGGCTGGCCGCCGGCGACGACAGCGC
AGCAAAAACAAGCTCAAGGCAGCGTCGAGGAGCGAC---ATCCCGTCAGGGCCGACGACTGTCCACCAAATCCCCGACCA
CCTCCTCGAGCTCGT--------------GCTCC--------------TCCG--------------TCGCCCTCGTCCGA
GCCGCCTTCACCTGCAAGCGCTGGCGCCGCCACGTCGCGGACACCGCATTCCTGGCCCGGTTCCGTTCCCTCCACGCAGC
CCACGTCGCCGGTCACTACCACGTCGTCGACCGGCCCTACCGCGAGAAGCTGCCGCCCGACGGGAA---CAACCAG----
--GTGTTCGTGCCAGACCCCTCGGCTGCCGACGCCATCGACAGACGCCACTTCTCCCTCGATTTCCTCCCGGAATGCGAT
GGCTCCTCGTCCTGGGAGCTCGCCGACAGCCGCGGCAGGAGAGGTGTGATTCTGGACCATGGTCCACCCGCACCCACGCT
CGGTGCCGTCCGATTAATACTACTTTCATGGAATACGAGCCAGCTTATCACTCAAACTTTAAAGATTAAGCTAATTCTAG
AACAGTACGGGGACCATAGATATGCCATTTCTTTTCTGAATCTACGTGGGCCCAAGCAGTACCCCAATGCTGATTTCCCT
CCTGGTTGTCCCATGCAAATAAACCAATTAGTATATTTTTGGATATTTATTTGTAGAATAGCTACGGTGCACGTATGGTA
CATCGATGTTTGTATCTGTGTTCATGTTATTTTTTCATGCAAAAAGATACTTTTGTGTTCTTAGAAGAAAAACCTCTTGT
GCTTTTAAAAAAAAGAAAGATTTCACGTGCTTTCACATAACTATCTCTATCATGTTGTTGCTATGATTTTATTTTTAAGA
AATTACTCAAAAGATATAGATGACCCAAATAACCATGTTGATGTACAGACATGTAAAAAATGAATATGCGCATAACGAGG
CAATACAAAATGTTGAACAGTGAGAAAACTAGTACATGCACCGATGCAAAGTTTTTATTTTATTCTCTATGGCACTTGCC
ATGCAGTATGTTTATTAGCAACACTAGGGCTGTTAAACCGTAGTTGATGATTCTTGCCATAAAATATGATAGACGTTAGG
TTCAAATCCTTAAAAATGATGTACGGCATCGAGTATAGGTGCGGCCGAACCATGGTCCCAAGCAACATTACTGCCGCGGC
AGCCTCCTTCTCTTTTACAGGACGAGAACAAACTGGACGGG------------------------GCGGCTTCGCTTCCC
GGACCTCGTCGTCTGCGAGCCGCTCTCGCGGCGGTACCAGGGGATCGCCTACCCGCCGGCGATGCGTCTCCACCTGTGCT
TCGGCGCGTTCCTGCTCGGCGGCGGCGCCGTCGACGAGACG---GGTGGCTGCATCGGCATGTCAAACTTCCGGGTGATC
GTCGCGGTCTACGAATACGTCGCGC------ATGCCCGTGCCGCACCCCGGGCCTGCGTGTTCTCCTCGGGCGCCGACGG
CGGTTGGAGCTTGGGGCAGCGCGCGGC------CGGCAGCGGCGGCGT-CCCCTCTCGTGGTTTGGCTTAATCACTTTCG
TAGGGCGGACGCGCTGGTCGCTCTACTGGTCGATGGAGCGCGACGGCGTCGTGCTCTCTCTCGACGAGTCCACCCTGGAG
TTCTCGCTCGTCATGTTCCCGGATGCTGTCGTGGGGTGGCGGGACGAGTTGTCAACCTTCTGGGTCATCGGCGGCGAAGA
CGGCGCGGTGCGCGTCGTCCGCGTGA---TCAACAGAGACCTGACGGTCTTTGCGCAGCTTCAGGGCGGCGGCGAGTGGG
TGACGGAGAAGGTCGTGAGGCTGCGGCCAGCCCACATTGTGGCGGCCAATGAGAGGTACGTCCTCTTGACGCCGAGGGGG
GAGACCTGCCTTTTCTCCGTCGAGCTCGACACGCTGCAGGCGGAGAGCACGCACGAGAGGAACAGGTACGCGGGAGCGGC
GTACCCGTACGACCTGCCCTGGCCACCGGTCCTGCAGGCTTGCTGTGCTGCCGATGACCGGCGCTGAAGGAGATGCCGCT
GATGTATTTATG--------------------------------------------------------------------
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>chr5A_1100
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----------------------------------------------------------------------------GCGC
GGCAACGGCAAGCCCAAGAGAGCGCCGAGGCGCGAGCCGCTCCCGCCAGGGCCAACGGGGTTGCATCACATCCCCGACCA
CCTCCTCGAGCTCGTCCTCCTGCACGTAGGCTCC--------------TCCC--------------TCGCCCTCCTCCGC
GCCGCCTTCACCTGCAAGCGCTGGCGCCGCATCGTCTCGGCCGCCGCCTTCCTCGCCCGGTTCCGCTCCCTCCACGCGGC
CCATATGCCAGGCCACTACCACGTCGTCGACCCCAGCTTCA---AGGAGCCGCCGCCCGACGGGAGCAGCAACCAT----
--GTCTACGTGCCGGACCCCTCGACGGCCGACGCCATCGACAGACGCCGCCTCGCCCTCGACTTCCTCCCGGAAGGCGAC
CGCTCGTTGCCCTGGGAGCTCGGCGACAGCCGCGGG--------------------------------------------
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GGCCTCCTGCTGCTCTACCGGAGGAATATCGTCTGGCACCGGATGGCCTACAGAACGTGGTACTCGGAGCTCCACTTCTC
CGATATGGTCGTCTGCGACCCGCTCACGCGGACGTACCAGACGATCCTCTGCTCGGACGAGGCTGGCTCCCGCCTGTTCC
TCGGCGTGTTCCTGCTCGACGGCGTCGCCGTGGACGAGTCTGGTGGCGGCTTCATCGCCATGTCGAATTTTCGGGTGCTC
GCCGTGGGCTAAGAAAGCCATGATTTCGAGGATGGCCGCGGCACTCCCCGTGCCTCCGTGTTCTCCTCCGGCAGCGAGGG
CGGCT---------GGTAGAGCGCGGC------CGAGAACGTCGTCTCCATTCCAGA---GTATGCCTCGATGAGCTTCG
CAGGGCGCGCGCGTTCTTCACTCTACTGGCGGATGGAGCGTGAGGTCGTCGTGCTGGCTCTCGACGAGACCACCCTCGAG
TTCTCGCTCGTCGAGTTCCCGTGTACCGTCGTGGGCATGCCGGATGAATCTTCAGCCTTCCGGGTCATCGGCGGCCACGA
CGGCGCGCTGCGCGTTGTCCGCGTGATGGTCAACAATGACCTCACGGTCTTTGCGCAGTTCCGGGGCAGCGGCGAGTGAG
TGGCCGAGAAGCTCGTAAGGCTGC--------------------------------------------------------
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>chr5B_1100
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----------------------------------------------------------------------------GCGC
AGCAACGGCAAGCCCAAGAGAGCGCCGAGGCGCGAGCCGATCCCTCCAGGGCCAACGGGCGTGCACCACATCCCCGACCA
CCTCCTCGAGCTCGTCCTCCTGCGCGTGGGCTCC--------------TCCC--------------TCGCCCTCCTCCGC
GCCGCCTTCACCTGCAAGCGCTGGCGCCGCATCGTCGCGGCCGCCGCCTTCCTCAACCGGTTCCGCTCCCTCCACGCGGC
CCACGTGCCAGGCCACTACCACGTCGTCGACCCCAGCTTCA---AGGAGCCGCCGCCCGACGGGAGGAGCAACCAT----
--GTCTACGTGCCGGACCCCTCGACGGCCGATGCCATCGACAGACGCCTCCTCGCCCTCGATTTCCTCCCGGAGGGCGAC
CGCTCGTTGCCCTGGGAGCTCGGGGACAGCCGCGGT--------------------------------------------
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GGCCTCCTGCTGCTCTACCGGAGGAATATCGTCTGGCACAGGATAACCTACAGAACGTGGTACTCGGAGCTCCACTTCTC
TGACATGGTCGTCTGCGATCCGCTCACGCGGACGTACCAGACGATCCTCTGCTCGGATGAGGTTGGCTCCCGCCTGTTCC
TCGGCGTGTTCCTGCTCGACGGCGCCGCCGTGGACGAGTCTGGTGGCGGCTTCATCGCCATGTCGAACTTTCGGGTGCTC
GCTGTGGGCTACGAAAGCCATGATTTCGAGGATGGCCGCGGCACTCCCCGTGCCTCCGTGTTCTCCTCCGGCAGCGAAGG
CGGCT---------GGCAGAGCGCGGC------CGAGAACGTCGTCTCCATTCCAGA---GTACGCCTCAATGAGCTTCG
CAGGGCGCGCGCGTTCTTCACTCCACTGGCGAATGGAGCGCGAGGGCGCCGTGCTGGCTCTCGACGAGACCAGCATGGAG
TTCTCGCTCGTCGAGTTCCCGTGTACGGTCGTGGGCATGCCGGAGGAATCTTCAGCCTTCCGGGTCATCGGCGGCCACGA
CGGCGCGCTGCGCGTTGTCCGCGTGATGGTCAACAATGACCTCACGGTCTTCGTGCAGCTCCAGGGCAGCGGCGAGTGGG
CGGCCGAGAAGCTCGTAAGGCTGC--------------------------------------------------------
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>chr5D_1100
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----------------------------------------------------------------------------GCGC
AGCAACGGCAAGCCCAAGAGAGCGCCGAGGCGCGAGCCGATCCCGCCAGGGCCAACGGGCGTGCACCACATCCCCGACCA
CCTCCTCGAGCTCGTCCTCCTGCGCGTAGGCTCC--------------TCCC--------------TCGCCCTCCTCCGC
GCCGCCTTCACCTGCAAGCGCTGGCGCCGCATCGTCGCGGCCGCCGCCTTCCTCGCCCGGTTCCGCTCCCTCCACGCGGC
CCACGTGCCAGGCCACCACCACGTCGTCGACCCCAGCTTCA---AGGAGCCGCCGCCCGACGGGAACAGCAACCAT----
--GTCTACGTGCCGGACCCCTCGACGGCCGATGCCATCGACAGACGCCGCCTCGCCCTCGATTTCCTCCCGGAGGGCGAC
CGCTCGTTGCCTTGGGAGCTCGGGGACAGCCGCGGG--------------------------------------------
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AGCCTCCTGCTGCTCTACCGGAGGAATATCGTCTGGCACAGGATAACCTACAGAACGTGGTACTCGGAGCTCCACTTCTC
CGACATGGTCGTCTGCGACCCGCTCACGCGGACGTACCAGACGATCCTCTGCTCGGACGAGGCTGGCTCCCGCCTGTTCC
TCGGCGTGTTCCTGCTCGACGGCGTCGCCGTGGACGAGTCTGGTGGCGGCTTCATCACCATGTCGAACTTTCGGGTGCTC
GCCGTGGGCTACGAAAGCCATGATTTCGAGGATGGCCGCGGCACACCCCGTGCCTCCGTGTTCTCCTCCGGCAGTGAAGG
CGGCT---------GGCAGATCGCGGC------CGAGAACGACGTGTCCATTCCAGA---GTATGCCTTAATCAGTTTCA
TAGGGCGCGCGCGTTCTTCACTCTACTGGAGGATGGAGCGTGAGAGCGTCGTGCTGGCCCTCGACGAGACCACCCTCGAG
TTCTCGCTCGTCGAGTTCCCGTGTACGGTCATGGGCATGCCGGAGGAATCTTCAGCCTTCCGTGTCATTGGCGGCCACGA
TGGCGCGCTGCGCGTTGTCCGCGTGATGGTCAACAATGACCTCACGGTCTTCGTGCAGCTCCAGGGCAGCGGCGAGTGGG
TGGCCGAGAAGGTCGTAAGCCTGC--------------------------------------------------------
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>chr7D_2646
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--------------------------------------------------------CCTTCCGCTACGTGGGCTGTGGGC
TACGGTTTGTGGTCAGTCTCATTTTTCATTTTCTGTTTATTTATTTTATTTCTTAATAGGTATCCCATGTAAATATTTTG
TATTTTCTTTCTTCTTTTTCTGTTATAGGCTTGTGTGTACAGAAAGAAGATACGCGTACTTATCTAGCTTTTTTTCTTC-
------TTTATTATTTATTTTCTATTTTATCTTTTTGTGTATTTGTTTTTATATGTTTTCTTTGTCTGTTTTTTCTTCTA
TTTCTAC-TTTTTTCTATTTTTATCATTCATCTTTGGAAGATTTAAGTTTTGTAGAAGATACATTTGACACGCATGAACA
ATTTTTATTCTCACTTGTTGTT------TTTTCTACATGTTTTTTGTTTTAATTTTATTTTGTCGGAGGGGGTGGCAGGA
GAGGGGGCAGGCCATTTTGCATGTCCGACACTAGGCATGCAACTGCAAGTGTCACCCCAGACCGCAACCTCATCTCTTCT
CACCCAACCACAACTGGACTTTTTTGTTCTGTCGGAGGGGGCGCTGGTAGAGGGGGCGGGCCAGTTGCAAGCCAGGCAAC
AGCCACGCAACTGCAATGTCTCACCCGACCGCAACTGCATGTCTTCTATACCGGCCACAACTTGACTTTATGTTCTGTCG
AACGGGGCGCCGGGAGAGGGGGCGGGCCAGTTGCAAGCCCGACAACAGCCCCGCAACTTCATGTCCCCCAACATGGTTGC
AACTCAATTTTTGTTTTTTGTAGGGGGCGTCGGGAGAGGGGGCATGCCAAGTGCAAGCCCGACAACAGCCCCGCAACTGC
AAGTGTCGCACCAAACCGCAACTACATGTCTCCCAACATGGTTGC-----------------------------------
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>chr7D_2646
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--------------------------------------------------------CCTTCCGCTACGTGGGCTGTGGGC
TACGGTTTGTGGTCAGTCTCATTTTTCATTTTCTGTTTATTTATTTTATTTCTTAATAGGTATCCCATGTAAATATTTTG
TATTTTCTTTCTTCTTTTTCTGTTATAGGCTTGTGTGTACAGAAAGAAGATACGCGTACTTAACTAGCTTTTTTTCTTCT
TTATTATTTATTATTTATTTTCTATTTTATCTTTTTGTGTATTTGTTTTTATATGTTTTCTTTGTCTGTTTTTTCTTCTA
TTTCTAC-TTTTTTCTATTTTTATCATTCATCTTTGGAAGATTTAAGTTTTGTAGAAGATACATTTGACACGCATGAACA
ATTTTTATTCTCACTTGTTGTT------TTTTCTACATGTTTTTTGTTTTAATTTTATTTTGTCGGAGGGGGTGGCAGGA
GAGGGGGCAGGCCATTTTGCATGTCCGACACTAGGCATGCAACTGCAAGTGTCACCCCAGACCGCAACCTCATCTCTTCT
CACCCAACCGCAACTGGACTTTTTTGTTATGTCGGAGGGGGTGCTGGTAGAGGGGGCGGGCCAGTTGCAAGCCCGGCAAC
AGCCACGCAACTGCAATGTCTCACCCGACCGCAACTGCATGTCTTCTATATCAGCCACAACTTGACTTTATGTTCTGTCG
AAGGGGGCGCCGGGAGAGGGGGTGGGCCAGTTGCAAGCCCGACAACAGCCCCGCAACTTCATGTCCCCCAACATGGTTGC
AACTCAACTTTTGTTTTTTGTAGGGGGCGTCGGGAGAGGGTGCATGCCAAGTGCAAGCCCGACAACAGCCCCGCAACTAC
ATGTGTCGCACCAAACCGCAACTACATGTCTCCCAACATGGTTGC-----------------------------------
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>chr3D_2646
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--------------------------------------------------------CCTTCCGCTATGTGGGCTGTGGGC
TACGGTTTGTGGTCAGTCTCATTTTTCATTTTCTGTTTATTTATTTTATTTCTTAATAGGTATCCCATGTAAATATTTTG
TATTTTCTTTCTTCTTTTTCTGTTATAGGCTTGTGTGTACAGAAAGAAGATACGCGTACTTAACTAGCTTTTTTTCTTCT
TTATTATTTATTATTT-------ATTTTATCTTTTTGTGTATTTGTTTTTATATGTTTTCTTTGTCTGTTTTTTTTTCTA
TTTCTACTTTTTTTCTATTTTTATCATTCATCTTTGGAAGATTTAAGTTTTGTAGAAGATACATTTGACACGCATGAACA
ATTTTTATTCTCACTTGTTGTT------TTTTCTACATATTTTTTGTTTTAATTTTATTTTGTCGGAGGGGGTGGCGGGA
GAGGGGGCAGGCCATTTTGCATGTCCGACACTAGGCATGCAACTGCAAGTGTCACCCTAGACCGCAACCTCATCTCTTCT
CACCCAACCGCAATTGGACTTTTTTGTTCTGTCGGAGGGGGCGCTGGTAGAGGGGGCGGGCCAGTTGTAAGCCCGGCAAC
AGCCACACAACTGCAATGTCTCACCCGACCGAAACTGCATGTCTTCTATATCGGCCACAACTTGACTTTATGTTTTGTCG
AAGGGCGTGCCGGGAGAGGGGGCGGGCCGGTTGCAAGCCCGACAACAGCCCCGCAACTTCATGTCCCCCAACATGGTTGC
AACTCAACTTTTG-TTTTTGTAGGGGGCGTCGGGAGAGGGGGCATGCCAAGTGCAAGCCCGACAACAGCCCCGCAACTGC
AAGTG---------------------------------------------------------------------------
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>chr1D_2648
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----------------------------------------------------------TTCCGCTACGTGGGCTGTGCGC
TACGGTTTGTGGTCAGTCTCATTTTTTATTTTCTGTTTATTTA-TTTATTTCTTAATAGGTATCCCATGTAAATATTTTG
TATTTTCTTTCTTATTTTTCTGTTATAGGCTTGTGTGTACAGAAAGAAGATACGCGTACTTAACTAGCTTTTCTTCTTCT
TTAT-------TATTTATTTTCTATTTTATCTTTTTGTGTATTTGTTTTTATATGTTTTCTTTGTCTGTTTTTTCTTCTA
TTTCTAC-TTTTTTCTATTTTTATCATTCATCTTTGGAAGATTTAAGTTTTGTAGAAGATACATTTGACACGCATGAACA
ATTTTTATTCTCACTTGTTGTT------TTTTCTACATGTTTTTTGTTTTAATTTTATTTTGTCAGAGGGGGTGGCAGGA
GAGGGGGCAGGCCATTTTGCATGTCCGACACTAGGCATGCAACTGCAAGTGTCACC-TAGACCGCAACCTCATCTCTTCT
CACCCAACCGCAACTGGACTTTTTTGTTCTGTCGGAGGGGGCG-------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S------
----SS-----S--S----S-----S-------------S---S--------S--------------------S------
----------------S--------------------SS---------------------------S--S---------S
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------------------
--------S-S-------------------S---S---------------------------------------------
--------------------------------------------------------------------------------
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-----S-------S-------------------------------------------------------S----------
----------------------------------------------------SSSSSSSSSSSSSS--------------
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----------------------------------------------------------------------------SSSS
SS------------------------------------------------------------------------------
-S------------------------------------------------------------------------------
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----------------------S---------------------------------------------------------
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-------------S-------------SSSSSS---------------------------------------------S-
----------------------S---------------------------------------------------------
----------S------------------------------------------S-----------------------S--
--------------------------------------------------------------------------------
----------------------------S--------------------S--------S---------------------
S-------------------------------------------------------------------------------
-------------------------------S-------S------------------SS--------------S-----
--------SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------S------
--------------SS---S-------S-SS-S-------------SS-----------S-------S----------S-
-S-----------------SSSS----------------------S-------------------S--------S-----
-----------S---------S----------------S--S--S--------------S-------------S------
S------S----------------------------------------SSSS--S-SS--------------S-------
----------------S-----SSSSSS-------SS-------------------------------------------
--S-----S-S-S---------------------------------------------S-------------------S-
S-SSSS--S-S--------------------------------SSS----------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------S---------------------------
-----------S-----------------------S-----S--------S-----------------S-S--S------
-----S-------S---------S------S-S--S---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS
>forward_484
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----------------------------------------------------------------TCGGCTAACTCCAGTG
CTTG----------------------------------------------------------------------------
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>reverse_3041
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CAGACCTGCCTTTTCTCCGT------------------------------------------------------------
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>forward_1442
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--------------------------------------------------------------ACGGGAACAACCAGAACC
AG------------------------------------------------------------------------------
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>reverse_3979
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----------------------------------------------------------CGACCGCAACCTCATCTCTT--
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----------
