>input_sequence_50298
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-----------------------------------------ATGAGCTGCAACGGGTGCCGCGTGCTGCGCAAGGGGTGC
AGCGACGCCTGCGTGCTGCGGCCCAGCATCGAGTGGATCGACGGCGCCCAGCCGCAGGCCAACGCCACCGTCTTCGTCGC
CAAGTTCTTCGGCCGTGCCGGCCTCGTCGCCTCCCTCGCCGCCGTCCCGCTCCACCACCGCCCAGGTACTTACCAT----
---CTCGC----TACCTTCAAGCGACGCGAGCGCCGGCCGGCCGGCGTTGCAATTGTTCATCTAGTGGTAGATAGATAGA
TTTTTTAGAAGGGCAGATGGGCTGTCAAGAATGCGGAAAACACAAAACAGCTCTTCAAGCTACGCGAGGGCCGGCCGGCG
TTGTCGATCACAGTCGTGATTAGTTTAGTGCACTACAGTACAATCTTATCTTATCTTACCTCTGCTAGCTATAGCTTTTA
CTACCTCGGTGATCAGTACAACCTAGCTAGCTAGCGTGCGGCCACCTGTGCGAAAAGTTAAAAACCCATCGCCTTGGTTT
TGTCTCGATGAACAATGTTACCCAGGCAGCCAGGCTACAGCTTAGACATGACCTATCTATGAAGGCAGTGTTTTA----A
TTATTTTAAGCATTCTTTTGGACGGTACGCGGCCTTCCGACGCGCCCATGGGTCAGACTGGCTAGGTAGCTCGCTAAAGC
AGAGAATCTTTTTAGCCACGCTCCCAATTGCACTTTGCCAAACAC---AATCCTTAATTAAAGAGTGCTGAGAGATATGC
TAATTAATCATGACGATTGCCCTCCGACCTCTGTCGAGAGGTCAATTCATATCTTTTGCCCCTTCGGCGCTGAATAATCC
ACCCATGCATTCCTACTCTGCCAAGTAGTAGAACACTCGTATAGTCCGGACAACATTTCAGGATTTCTAGAATCTTCTGT
TGATTAACAATAATAATTAA------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------CATAATTATATGTTAGG---ATTGGGTGATTAACATGTCGTCTTAC-TGGTGCAGCCTTG
TTCCGGTCGCTTCTGTACGAGGCGTGTGGCCGGACGATCAACCCGGTGAGCGGCGCCATCGGGCTCATGTGGACCAGCAA
CTGGGACCTCTGCCAGGCCGCCGCCGACGCCGTGCTGCGCGGCGACTCCCTGCGCTCGCTCTCCGCCGTGCCCGCCGCCT
TCACGGAACGCGACATGGCCGGCCTCTACGGCAACGTCGGCACAAACACCGGCAGCTCCTCCTCCCTCCACTCCTCGCCG
GAGAACTCCACGTCCGCGCCCGCCAGGAAGCGGAGCAAGAACAACCCTGGCTGCGGCGCCGCAGGAGG---GCAGCAGGT
GAAGCTGCCGGGGCCGG------TGCTGCCGTCGTGCGATCTGGACCTCTGCCTGACGCCCTTGTCGTCGCCGCTGGCCG
GCGGGAGGCGAGGCGGCGCGTCAGACGAGTACTCCACCACGACGTGCTGCGAGGACGCCAGCGGCGACGCGGCGGAGGCC
GGGGCGCCCCCGCTGCTGAACCTCTTCAACTGA-----------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------
>chr4B_1_TraesCS4B01G078800
CAATGCGTAGGTAGACTATGTAGGCAAATTATGAGCGGTACATTGATTAATGCATAAAAACCTTATACTCCCTCCAATCG
TATTAATTGTCAATAACCTAGTAGTCCATCCATCCAGAAATACTCGTCGGAGAACTGAAATCGAGACGGAGGGAGTATAA
CTTTAGTAGAGGGAGGACTTAAGATATTCCCTCTGTTCATTTTTATAAGACCTCGAAGAGATTTTAGACAATGTGCAAAA
CATCCTATTTTGAGATGTCGGAAACGACTTACGAAAGTGAACGGAGGGAGTACTTTTTTTTGGTTCAGTTGGCAAATTGC
TTCCTTGGCTCAGAAATACAAACAATAATTATACTATTTAGAAAAAAGTACAGACACTAATTTGATAGTCCAATTCAAGT
TTTGGCCACATCTTTCTGAGCGAATTAATATGCATCTTTTTGAGAGTTGCACAAATACACGTTTAGCGCAGTGAAGTAGG
GTGGGTCATAGTCCTCGATCGCACCCGAGGACGAAGGACTACA-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----GTTTGAGCATGTGGGCACAGGGCTAGCAAAGCGGTGGGCGCGCGTAGAAGATCCCGTGGAAGCAAAGACTAGTGC
GGACCGAGGCCATCGCGGCAACACGGGGGCGCCAACCGCCCAATGTCATCGGAACCCC-CAGCACCAACCAAATATTTCT
CCTCCTCGAGCCCGCGGCCCCCA----GCCACTTGGGCGC----ATACATATTTCCATTTCCACGGGCC---------GG
AAGCATCACCCCCTCCTCTATATAAGCGCCCCGGCAGTGTCCGCTCTCCTCTGCTACTCCCTACCA-----------CTC
CTCCCCGCCGCATATCGACATCGACC----GACGTCCAGTTTAGTAGCAAGATCTACACCGCGGACTCCGCCAGCTCAAT
CACC----GCGCACCTCCGGCGTACGGCGGCAGATAAGGTGGCCGACTGTCCAGGGAGCCGAGGATTCG--TCTATCGAT
CGACCGAGTGCCCCGCCGTTGGTTGATCCGTTAGGTGAGAGATGAGCTGCAACGGGTGCCGCGTGCTGCGCAAGGGGTGC
AGCGACGCCTGCGTGCTGCGGCCCAGCATCGAGTGGATCGACGGCGCCCAGCCGCAGGCCAACGCCACCGTCTTCGTCGC
CAAGTTCTTCGGCCGTGCCGGCCTCGTCGCCTCCCTCGCCGCCGTCCCGCTCCACCACCGCCCAGGTACTTACCAT----
---CTCGC----TACCTTCAAGCGACGCGAGCGCCGGCCGGCCGGCGTTGCAATTGTTCATCTAGTGGTAGATAGATAGA
TTTTTTAGAAGGGCAGATGGGCTGTCAAGAATGCGGAAAACACAAAACAGCTCTTCAAGCTACGCGAGGGCCGGCCGGCG
TTGTCGATCACAGTCGTGATTAGTTTAGTGCACTACAGTACAATCTTATCTTATCTTACCTCTGCTAGCTATAGCTTTTA
CTACCTCGGTGATCAGTACAACCTAGCTAGCTAGCGTGCGGCCACCTGTGCGAAAAGTTAAAAACCCATCGCCTTGGTTT
TGTCTCGATGAACAATGTTACCCAGGCAGCCAGGCTACAGCTTAGACATGACCTATCTATGAAGGCAGTGTTTTA----A
TTATTTTAAGCATTCTTTTGGACGGTACGCGGCCTTCCGACGCGCCCATGGGTCAGACTGGCTAGGTAGCTCGCTAAAGC
AGAGAATCTTTTTAGCCACGCTCCCAATTGCACTTTGCCAAACAC---AATCCTTAATTAAAGAGTGCTGAGAGATATGC
TAATTAATCATGACGATTGCCCTCCGACCTCTGTCGAGAGGTCAATTCATATCTTTTGCCCCTTCGGCGCTGAATAATCC
ACCCATGCATTCCTACTCTGCCAAGTAGTAGAACACTCGTATAGTCCGGACAACATTTCAGGATTTCTAGAATCTTCTGT
TGATTAACAATAATAATTAA------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------CATAATTATATGTTAGG---ATTGGGTGATTAACATGTCGTCTTAC-TGGTGCAGCCTTG
TTCCGGTCGCTTCTGTACGAGGCGTGTGGCCGGACGATCAACCCGGTGAGCGGCGCCATCGGGCTCATGTGGACCAGCAA
CTGGGACCTCTGCCAGGCCGCCGCCGACGCCGTGCTGCGCGGCGACTCCCTGCGCTCGCTCTCCGCCGTGCCCGCCGCCT
TCACGGAACGCGACATGGCCGGCCTCTACGGCAACGTCGGCACAAACACCGGCAGCTCCTCCTCCCTCCACTCCTCGCCG
GAGAACTCCACGTCCGCGCCCGCCAGGAAGCGGAGCAAGAACAACCCTGGCTGCGGCGCCGCAGGAGG---GCAGCAGGT
GAAGCTGCCGGGGCCGG------TGCTGCCGTCGTGCGATCTGGACCTCTGCCTGACGCCCTTGTCGTCGCCGCTGGCCG
GCGGGAGGCGAGGCGGCGCGTCAGACGAGTACTCCACCACGACGTGCTGCGAGGACGCCAGCGGCGACGCGGCGGAGGCC
GGGGCGCCCCCGCTGCTGAACCTCTTCAACTGAGAACCTGAGTGTAAACTGTAATTGTGCAGTTCGTGTGTGTGTGTGTG
GGTGGTGATTAATTAGTTGCATCGGTGTTAGTCAATGAAGTTTTTTGGGACGTGCAACTTGGTTTACAAAAATGTTCGAT
CCATGTTCTAGCGCTCTTATCTTTTGCACGAGTCAGCTAACAAATCGTTTCTCTAGTTCTAAAACAAAGATGAAGTGATC
CGTGGTGAGATACGC--ATATAGGAGTATCATGTTGTGCATG--------------CTTGCCGTGAAGTGCAGGCATGGC
-------------------TGAC---AGAGGGTGCGGTCTTTGGAAGGCGATGCTCGACGGCATCGCTGGATAGCGATCT
TCAATGGCCACCCGACCTGGTTAGCGCATATACAGATAGCAAATCCAGACCCTCAAACGCCCGTGAAAGTGTCTCTACAT
GTCCGCGGGCGCTTACGGGTCACGCCCTATTTGTTGGCTTCCATACCCGCGTCTATCATATCCGAAACTTTAAAACAATA
TAATCCATGCAACACTACATAAAAAACGGCCAACACACGGAGTTCATCGGATCAACATTTCATCGCCGGACAAA---AGA
AGTATAGTTCATCGGAGTTCAACGAC---------AAATCCATTCTACAAATAACTTA--AAACATAATTGAAATATAAA
CAGAACAGGCAAGGACGGTGGAAATCACCATTCACTCACTGTCCCCTTCCCCTTCTGGCCGTCGATGCGGTCGTGCCCTT
CCTCCGTGTAGGC--CGGCGTGTGGTGGTGCGTCGTCGTCGGAGCTGGAGGTCGAGCCGTCCGTCATGTCGGAGTCCGAG
CTACAGCTTCGGCCCGACAGCCTG-CGAAGCAGGCGGTCCTGCTCCTTCGCATGGCGGGACGCCTTCGCTTTCGCT----
--GCCGCCTCCTTGCTTGCCTCGTGCTCCGATAACTTGATGGCGAGTCGGAGTGCCTTGGCATTCTTGCGCTGGAGGACC
ATCACGACAGCACGATATCGGGATCGGCCGGCGCGCTCGCGCATGCCTGGCGTG
>chr4A_299
TTTAGTTAAA----------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------TTGGCAAACTGC
TTCCTTGGCTCAGAAATACATACAATAATTACTATTCA---AAAAAAGTAAAGACAATAATTTGATAGTCCAATCCAAGT
TTTAGCCACGTCTGTTTGAGCGAATTAATATGCATCAAGTTA-------CACAAATACACGTTTAGCGCAGTGAAGTAGG
GTGGGTCATCGTCC----TAGCACTCGATGACAAAGGGCTACGGTTTTAGTACAAAAATGTTTAGTCGTATAGGCTGTTA
AAGGTTTCTACAGGCTCGTTCCAAACTTTCTAAACACCCCCACCCCCCTCCCCCCGATTTCAATGGAGGTGGGTGGGCTC
GTGCCTCTACTAATGACCAATTAAAAACCGCCACAACACCTTGTAAACCCCTCGTCCCTGTAACATCTTACGTGTAGCAA
AGCTCGTTTGAGCATGTGGGCACAGAGCTAGCAA-GCGGTGAGCACGCGTAGAAGATCCCGTGAAAGCAGAGACTGGTGC
GGACCGAGGCCATCGCGGCAACACGGGGGCGCCAACCGCCCAATGTCATTGGAACCCCGCAGCACCAACCAAATATTTCT
CCTCCTCGAGCCCGCGGCCCCCAGCCTCCCACTTGGGCGCATCTATACATATTTCCATTTCCACAGGCCAAGCAGGAAGG
AAGCATCG-CCCCTCCTCTATATAAGCGCCCCGGCAGTCTCCGCTCTCCTCTGCTACTCCCTACCAGGCTACCACTCCTC
CTCTCCGCCGCATATCGACACCGACAGACGGACGTCCAGTTTAGCAGCAAGATCTGCAGCACGTACTCCGCCAGCTCAAC
CACC----GCGCACCTCCGGCGTACGGCGGCCGATACGGTGATCGACTGTCCAGGC-----------TCCATCCGTCGAT
CGACGGAGTGCCGCGCCGTTGGTTGATCCGTC------GAGATGAGCTGCAACGGGTGCCGCGTGCTGCGCAAGGGGTGC
AGCGACGCCTGCGTGCTGCGGCCCAGCATCGAGTGGATCGACGGCGCCCAGCCGCAGGCCAACGCCACCGTCTTCGTCGC
CAAGTTCTTCGGCCGCGCCGGCCTCGTCGCCTCCCTCGCCGCCGTCCCGCTCCACCACCGCCCAGGTACTTACCACCATC
TCGCTCGC----TACCTTACTTTTAAC----------------------GCAATTCTTCATCCAGTAGAGTAGTGGCAGA
TA-TTTGGAAGGGCAGATGGGCTGTCAAGAACGCGGAGAACGCAAAACAGCTCTTCAGGCTACGCGAGGGCCGGCCGGCG
TTGTCGATCACAGTCGCGATTAGTTTAGTGCACTACAGTACAATCTTATCTTATCTTACCTCCGCTAGCTATGGCTAACT
TTACCTCGGTGATCAGTACAAC-TAGCTAGCTAGCGCGCGGCCACCTGTACGAAAAGTTAAAAACCCATCGCCTTGGTTT
CGTCTCGGTGAACAATGTTACCCACGCAGCCGGGCTATAGCTTAGACATGACCTATCTATGAAGGCAGTGTTATAGTAGA
TTATTTTAAGCGTTCTTTTGGACGGTACGCGGCCTTCCGACGCCCCCATGGGTCAGACTGGCTAAAGG------------
AGAGAATCTTTTTAGCCACGCTCCCAATTGCGCTTTGCCAAACACAGAAATCCTTAATTAAA-AGTGCTGGGAGATATGC
TAATTAATCATGGCGATTGCCCTCCGACCTCTGTCGAGAGGTCAATTCATATCTTTTGCCCCTTCGGCGCTGAATCGTCC
ACCCATGCATTCCTACAG----------------ACTCGCATAGTCCGGACAACATTTCAGGATTTCTAGAATCTTCGGT
TGATAAATAGCCATGATACTTAGGCTGCCCATAATGAGAGTATCGTAGGTAGTATCATGCATGCCAATTAAGCAATTTTG
ATGTAGTAACATAAAATTAAATAAAGAAAAAGAGTCTTGAGTATCATATCATGATACCGTATCATATTAAATGATGTGCT
ATTTTGTGTCATGCATGACAATAAATGTTGGTATTAGGAATGTAGTATTATAGACTAGTATCATATGCATGATACTAATA
TATGATACTCCCCATTCCGGCATAATTATATGTTAGGGTTATTGGGTGATTAACGTGTGGTGTCATTTGGTGCAGCCTTG
TTCCGGTCGCTTCTGTACGAGGCGTGTGGGCGGACGATCAACCCGGTGAGCGGCGCCATCGGGCTCATGTGGACCAGCAA
CTGGGACCTCTGCCAGGCCGCCGCCGAGGCCGTGCTGCGCGGCGACTCCCTGCGCTCGCTCTCCGCCGTGCCCGCCGCCT
TCACGGAGCGCGACATGGCCGGCCTCTACGGCAACGTCGGCACCAACACCGGCAGCTCCTCCTCCCTCCACTCCTCGCCG
GACAACTCCACGTCCGCGCCCGCCAGGAAGCGGAGCAAGAACAGCCCCGGCTGCGGCGCCGTAGGAGGGCAGCAGCAGGT
GAAGCTGCCGGGGCCGGGGCCGGTGCTGCAGTCGTGCGAGCTGGACCTCTGCCTGACGCCCTTGTCGTCGCCGCTGGCCG
GCGGGAGGCGAGGCGGCGCGTCGGACGAGTACTCCACCACGACGTGCTGCGAGGAAGCCAGCGGCGACGCGGCGGAGGCC
GGGGCGCCCCCGCTGCTGAACCTCTTCAACTGAGAGACTGAGTGTAAACTGTAATTGTGCAGTTCGTGTGTGGG------
--------TTAATTAGTTGCATCGGTGTTAGTCAATGAAGCTTTTTGGGACGTGCAACTTGGTTTACAAA--TGTTCGAT
CGCTGTTATTT----------TTTTGCATGAGTCAGCTAACAAGTCGTCTCTCTAGTTCTAAAACAAACATGAAGTGGTC
CGTGGTGAGACACGC--ATATA------TCATGTTGTACATGCTTAGTTGCAGATAGTTGCCGTGAAGTGCAGGCATGGC
CAACACACGTAACATTTTCGTGACAGAGAGGGTGCGGTCTTTGGCAGGCGATGCTCGACGGCATCGCTGGATAG------
--------------------------------------------------------------------------------
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>chr4D_482
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-TGGGTCATCGTCC----TCGCGCCCGAGGACAAATGGCTACGGT-----------------------------------
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-------TTGGGCACGTCGGCACAGGGCGAGCAAAGCGGTGGGCACGCGTAGAAGATCCCGTGGAAGCAAAGACTAGTGC
GGACCGAGGCCATCGCGGCAACACGGGGGCGCCAACCGCCCAATGTCATTGGAACCCCCCAGCACCAACCAAATATTTCT
CCTCCTCGAGCCCGCGGCCCCCA----CCCACTTGGGC--------------TTGCATTTGCACAGGCCA----GGAAGG
AAGCATCG-CCCCTCCTCTATATAAGCGCCCCGGCAGTGTCCGCTCTCCTCTGCTACTCCCTACCAGGCTACCATTCCTC
CTCGCCGCCGCATATCGACATCGACCGACGGACGTCCAGTTTAGCAGCAGGATCTACACCGCGGACTCCGCCAGCTCAAC
CACCGCCCGCGCACCTCCGGCGTACGGCGGCAGATACGGTGGTCGCCTGTCCAGGGAGAGGGAGGGTTCCATCGATCGAT
CGACCGAGTGCCCTGCCGTTGGTTGATCCGTC------GAGATGAGCTGCAACGGGTGCCGCGTGCTGCGCAAGGGGTGC
AGCGACGCCTGCGTGCTGCGGCCCAGCATCGAGTGGATCGACGGCGCCCAGCCGCAGGCCAACGCCACCGTCTTCGTCGC
CAAGTTCTTCGGCCGCGCCGGCCTCGTCGCCTCCCTCGCCGCCGTCCCGCTCCACCACCGCCCAGGTACTTACCAT----
---CTCGCTCGCTACCTTAGTTTTAAC----------------------GCAATTCTTCATCTAGTAGAGTAGTGGTAGA
TA-TTTAGAAGGGCAGATGGGCTGTCAAGAACGCGGAAAACGCAAAACAGCTCTTCAAGCTACGCGAGGGCCGGCCGGCG
TTGTCGATCACAGTAGCGATTAGTTTAGTGCACTACAGTACAATCTTATCTTATCTTACCTCCGCTAGCTATAGCTAACT
TTACCTCGGTGATCAGTACAACCTAGCTAGCTAGCGTGCGGCCACCTGTACGAAAAGTTAAAAACCCATCGCCTTGGTTT
CGTCTCGGTGAACAATGTTACCCAGGCAGCCAGGCTATAGCTTAGACATGACCTATCTATGAAGGCAGTGTTTTA----A
TTATTTTAAGCATTCTTTTGGACGGTACGCGGCCTTCCGACGCCCCCATGGGTCAGACTGGCTAGCTAGCTAGCTAAAGC
GGAGAATCTTTTTAGCCACGCTCCCAATTGCACTTTGCCAAACATAAAAATCCTTAATTAAAGAGTGCTGAGAGATATGC
TAATTAATCATGACGATTGCCCTCCGACCTCTGTCGAGAGGTCAATTCATATCTTTTGCCCCTTCGGCGCTGAATCATCC
ACCCGTGCATTCCTACTCTGCCAAGTAGTAGAACACTCGTATAGTCCGGACAACATTTCAGGATTTCTAGAATCTTCTGT
TGATAAATAACCCTAA----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------TATATGTTAGG---ATTGAGTGATTAACGTGTGGTGTTAT-TGGTGCAGCCTTG
TTCCGGTCGCTTCTGTACGAGGCGTGTGGCCGGACGATCAACCCGGTGAGCGGCGCCATCGGGCTCATGTGGACCAGCAA
CTGGGACCTCTGCCAGGCGGCCGCCGACGCCGTGCTGCGCGGCGACTCCCTGCGCTCGCTCTCCGCCGTGCCCGCCGCCT
TCACGGAGCGCGACATGGCCGGCCTCTACGGCAACGTCGGCACCAACACCGGCAGCTCCTCCTCCCTCCACTCCTCGCCG
GAGAACTCCACGTCCGCGCCCGCCAGGAAGCGGAGCAAGAACAA------CTGCGGCGCCGCAGTAGG---GCAGCAGGT
GAAGCTGCCGGGGCCGGGGCCGGTGCTGCAGTCGTGCGAGCTGGACCTCTGCCTGACGCCCTTGTCGTCGCCGCTGGCCG
GCGGGAGGCGAGGCGGCGCGTCGGACGAGTACTCCACCACGACGTGCTGCGAGGAAGCCAGCGGCGACGCGGCGGAGGCC
GGGGCGCCCCCGCTGCTGAACCTCTTCAACTGAGAGCCTGAGTGTAAACTGTAATTGTGCAGTTCGTGTGTGTGTGGGTG
GGTGGTGATTAATTAGTTGCATCGGTGTTAGTCAATGAAGCTTTTTTGGACGTGCAACTTGGTTTACAAA--TGTTCGAT
CCATGTTCTAGCGCTCTTATCTTTTGCATGAGTCAGCTAACAAATCGTTTCTCTAGTTCTGAAACAAAGATGAAGTGATC
CGTGGTGAGACACTCATATATA------TCATGTTGTGCATGCTTAGTTGCAGATACTTGCCGTGAAGTGCAGGCATGGC
CAACACACGTAACATTTCGTGAC---AGAGGGTGCGGTCTTTGGCGGGCGATGCTCGACGGCATCGCTGGATAGCGGTCT
TCAATGGCGACCCAGCCTGGTTAG--------------------------------------------------------
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>chr5D_2843
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--------------------------------CAGGTTGCAAATCCAGGCCCTCAAACGCCCGCGGACGG------GCGC
GTCCGCGGGCACTGACCGGACACATCCTATTTGGTGGCTTCCACACCCATGTCCCTCATATCCAAACCCTCAAAACCATA
TAAC---------GCTACGTAAACACAATCAACAACACGCAGTTCATCGGATCAACTTTGCATCGCTGGACAAA---CGA
AGCATAGTTCATGGGAGTTCAATGGC---------AAATCCATACTACG---AACTTA--AAACATAGTTAAAATATAAA
CATAACGGGGAAGGGTGGTGGAAATCACCATTTCCTCGCCGGCCCCTCCCCCTTCCGGTCGTCGGCGCGGCTGTGCCCCT
CCTCCATGTAGGCATCGGCGTGCGGAGGCGCGTCGTCATCGGAGCTCGAGGTGGAGCCGTTCGTCAAGTCCGTGTCGAAG
TTACAACTCATGCCCGATAGCCTG-CGGAGCAGGCGGTCCTGCTCCTTCGCATGGCGGGCCACCTTCACCTTCGCC----
--GCCGCCTCCTTGGTTGCCTCGCGCTCCGACGTCTCTATGGGGAGTCGGAGCGCTGTGGCATTCTT-------------
------------------------------------------------------
>chr6A_2844
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---------------------------------AGACAGCTAATCCAGGTCCTCAACCGCCAGCGGACGTGCCCGAGCGC
GTCCGCGGGTACTAACCGGACAGGCCTCATATGTTGGCTTCCACACTCGCGTCATTCATATCTAAAACCTCAAAACCATA
CAACTCATGACACGCCTATATAAAG-AATGATCAACACGCAGTTCGTCGGATCAACATTTCATCGTCAGACAAA---AGG
AGCATAGTTCATCAGAATTCGACAGCAGACAATGCAAATCGATACTACAAACTACTTC--AAACATAGTTAAATTATAAA
TAGAACAGGGAAGGGCAGAGGAAATCACCATTTCCTCATCGGCTCCTTCCCCTTCCAGTCGTCGATGCGGCTATGCCCCT
CCTCCGTGTAGGCATCGGCATGCAGTGGTGTATCGTCATCAGAGGTGGAGGTGGAGCCGCCCATCAAGTTGGAGTCCAAG
ATGCAGCTTCGGCCTGACAACCTG-CGGAGCAGGCGGTCCTGCTCCTTCGCATGGCGGGCCGCCTTCGCCTTCACCTTCG
CTGCCGCCTCCTTGCTTGCCTCACGCTCTGGAAACTCGACGGCGAGTCGGAGTG--------------------------
------------------------------------------------------
>chr7D_2894
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---CGCGGGCACTGACCGGGCACGCCTTATATTTTATCTTCCACACTCACATCACTCATATCCGAAACCTCAAAACAT--
----TCATGCAACGCTACGTAAAACACATGATAAAAGCGCAGTTCATCGGATCA----------GCCGGACCAA---AGG
AACATAATTCATCGGAGTTCTACAACGAACAGTGCAAATCCATACTGCAAACTACTTATGAAACATCGATAAAATATAAA
AAGAACGAGGAAGGGCGGAGGAAATCACCATTTTCTCGCCGGCCCCTTCCCCTTCTGGTCGTCGGCGCGGCTGTGCCCCT
CCTCCGTGTAGGCGCCGGCGTGCGGAGGCGCGTCATCGCCGGAGCTGGAGGTGGAGCCATCCGTCAGATTCGAGTAGGAG
CTAAACCTCATGCCCGAC-AGCCTTCGGAGCAGGCGGTCCTGCTCCTTCGCATGGCGGGCCGCCTTCGCCGT--------
----CGCTTCCTTTGTTGCCTCACTCTCCGACAACTCGATGGCGAGTCAGAGCGCCTTGGCATTCTTGCGGTGGAGG---
------------------------------------------------------
>chr6D_2906
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----------------CGGGCACGCCTCATTTGTTGGCTTCCACAGCTGCGCCCCTCATACACGAAACCTCAAAACCATA
CAACCCATGTAATGCTACGTAAAAGACTATCAACACACGCAGTTCATCAGATGAACATTTCATGGACAAACAAA---AGG
AGCATAGTTCTTCAGAGTTCAACAACGGAGATTGCAAACCCATACTACAAACTACTTA--GAACGTTGTTAAAATATAAA
CAGAATGGAAAAATGTAGAGGAAATCGCTATTTCCTCGCCGGCCCATTCCCTGCC-GGTCATTGATGCGGCTGTGCCCCT
CCTCCATGTAGGCGTCGGCGTGCGGTGGTGCGTCGTCGTCGGAGCTGGAGGTGGAGCCGCCCGTCAAGTCGGAGTCTGAG
CTACAGCTTCGGCCCGAC-ACCTG-CGGAGCAGGCGGTCCCGCTCCTTCACATGGCAGGCCGCCTTCGAATTCGTT----
--GCCGCCTCCTTGCTTGCCTCGTGCTCCGACAAGTCGATAGCGAGTCGTTGTGCCGTCGCATTCTTGCGGCGGAGG---
------------------------------------------------------
>chr2A_2911
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--------------------CACACCTTATTTGGTGGCTTCCACACCCATATCCCTCATATCCAAACAATCAAAACCATA
CAAACCATGCAATCCCATGTAAACACAATCAACAACACATGGTTCATCAAATCAACTTTGCATCGCCGGACAATAATAGA
AGCATAG-TTATTGGAGTTCAACGGC---------AAATACATACTACG---AACTTA--AAACATAGTTAATATATAAA
CATAACAAGGAAGGACGGAGGAAATAACCATTTCCTCGCCGGCCCCTTTCCCGTTCGATCATCGGCGCGGCGGTGCCCCT
CCTTCGTGTAGGCGTTGGCGTGCGGAGGCGTGTCATCGTCGGAACTGGAGGTGGAGCCATCCGTCGGGTCGGAGTAGGAG
CTGCAACTCATGCTCGAC-AGCCTGCAGAGCAGGCGGTCCTGCTCCTTCGCATGGCGGGCCGCCTTCGCCTTTGCC----
--ACCACCTCCTTGGTTGCCTCGCGCTCCGACATCTCGGTGGCGAGTCAGAGCACCGTAACATTCTTCCGGTGGAGG---
------------------------------------------------------
>chr6B_2914
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-----------------------GCCTTATTTGTTGGCTTTCACACCCGCGT--TTCATATCTAAAACCTTAAAACCATA
CAACTCATGCAACGCTACGTAAAAAACAATCAATACATGCAGTTTATCGGATCAACATTTCATCGCCGGACAAA---AGG
AGCATAGTTTATCGGAGTTCAACGGTGGGCAGTGCAAATCCATACTCCAAACTACTTA--AACCATAGTTAAAATATAAA
CAGAACGGGGAAGGGCCGAGGAAATCACCATTTCCTCGCCGGCCCCTTCCCCTTCCGGCCGTCGAT-CGGTTGTGCCCCT
CCTCCGTGTAGGCGTCGGCGTGCGGTGGTGCGTCGACATCGGAGCTGGAGGTGGAGCCGCTCGTCAAGTCGGAGTCTGAG
CTGCAACTTCGGTGCAAC-AGCCTACGGAGCAGGCA-TCCTGCTCCATCGCATGGCAGGCCACCTTCGCCTCCCCC----
--GCCACCT-CTTACTTGCCCCGCGTTCCGACAAATCGATGGTGAGTCGGAGTGCCTTGGCATTCTTG------------
------------------------------------------------------
>SNPs
SSSS-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S---
--------------------S----------SSS-SSSSSS---------S-----S-----------------S-----
---S-----S---S-S--------------------SSS--SSSSSSSS-------------------------------
---------S----SSSS--------------S----S----S-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------S-----------------------------------
-------------------------------------------------S------------------------------
---------------------------S------------------------------------S---------------
-------SS-----------------------------------------------------------------------
---S----------------------------------------S----------------------------------S
------------------------------------S-----S---------------SS-SS-SS-SS----S------
-------------------------------SSSSSSS------------------------------------------
--------------------------------------------------------------------------------
---------------S----------------------------------------------------------------
------------------SSSSSS-SSSSSSSSSSSSSSSSSSSSSSSS------S----------S-SSS-SS-S----
-SS----------------------------S---------S--------------------------------------
----------------S---------------------------------------------S-------------SSSS
S------------------------------------------------S------------------------------
S------S-----------------------------S------------------------------------------
-------------------------------------------S---------------------S-----S--------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------S----
--------------------------------------------------------------------------------
----S--S--SS-----SSS------------------------------------------------------------
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------------------------------------------------------S---S--S---S--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------S-----------------------------------S------------------------------------
-----------------------------------------------S--------------------------------
-----------------------------S---------S----------------------------------------
----------------------S--------------------------------S------------------------
-----------------------------------S----------------------------------------S---
----------------------------------------S-----------------------------SS--------
----------------------------S---------------------------------------------------
----------S-----------SSSSSS----------------------------------------------------
--------------------------------------------S-------------------------------S---
--------S----SS---------SSSSSSSS----------------S--------------S-S-S---S-SSSS-SS
----------S--S--S--S-----------------------S---------SS-------------S-----------
---S---------S----S--------SS----------S----------------------------------------
--S----------------------------------------S-------S---------------S--S---------
---------S----------------------SS-----S-S-----------------------------S------S-
----------------------S-----------------------------S-------------S-------------
---------------------------S-------------------------------S---------S----------
-------------------------------S----S---------------------------------S------SSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1085
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------CGACCGACGTCCAGTTTAGT-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------
>reverse_2903
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------AGACGAGTACTCCACCACGA--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------
>forward_1768
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------TCGCCTTGGTTT
TGTCTCGA------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------
>reverse_4002
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-TCACGACAGCACGATATCGG---------------------------------
