>input_sequence_50241
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----------------------------------------------AGACCAACAAAGGGAGGAACCAGTGGAAACCAGC
GCCCTCACACGTGTCAGTGTACCATTGGACCAGAAATCCAACCT-AGACCAAATGAAAAATCAGTCAGACTGATTAAAAA
AATATTCACCGGGGGCATGCATTTCCC---------GTCTGTCAGTCTGAAGCA--C--------TCTGGAGTCGATTCA
AAACCGCGGCGAGTAGCTTCTTTGTCCGGTCAAGATCGCCGGCTCATCCACACATAAATAATACACC--CACGCCACAAA
GGGGAGAGGAAGCATGGAGCACCAGCGACGGGAGCCGGCGCCGGAGACGGAGGTCACCCTGCGCGAGTTCACCGAGGCCG
ACGCGGAGGCGCTCTTCGCGTGGGCGTCGGACCCGCGCGTGGTCCTCTTCCAGCGCCGCGAGGCCTACGCGCGCGTCGAC
GAGGCCCGCCGCTACATCCGCGACCACGTCCTCCCGCACCCGTGGTACCGCGCCATCTGCCTCGGCGCCGTGGCGGTGGG
ATCCATCTCCGTCAAGCCCTGCGGCCCCGCGGGGGAGGAGGAGGGCGCGTCGTCGTCGAGGGCGTCCCTGGGCTACCGCG
TCGCGCACGGCTACTGGGGCCGCGGCATCGCGACGCGCGCGGTGGGGATGGCCGCGGCGGCGGCGTTCGCGGAGTGGCTG
TGGCTGGCGCGGCTGGAGGCGGTGGCCGACGTGGAGAACCCGGCGTCGCAGCGGGTGCTGGAGAAGGCCGGGTTCGTGAG
GGAGGGCCTGCTCCGGCGCTACGTCGTGCTCAAGGGCCGGCCCAGGGACATGGTCATGTTCAGC--GTCGTCCGCTCGGA
TCGGGCGCC-------------AAAAT-----TACGAGTGACAGAACCATTTTTGAATTGAATAAGGAGTAGGTGTCGTT
GG------------CTGCTCTGATTGACTCGTACGTAAATTCTCAATCGCCA------------AAGATCACAATCATAC
TACACTAGCAGAGGCAGGCGGGGAGCGATGGACCTTGACGACGGCGACGCGCGGCGGCAAA---------------AGGA
GGCGGAGGGCCCGGTGGTGTCGCTCCGGCCGCTGGG--------------------------------------------
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------------------------------------CCACTGGGGCCGCGGCGTCGCCTCCGCCGCCATCAGGATGGTAA
CCCACTACTGCTAGCTGGTAACGCTGGCGGCGGA--GCTCCGGTCCGGGAGTCCAGCCTGGCGGTT---GACTGACTTGG
TGTGTTCTTGACGGACGCGCGCAGGTGGTTGGGAGGGTGTTCGAGGATCTGCCGGGGCTGGGGAGGCTGGAGGCGGTGAC
GGACGTCGGGAACGCGCGGTCGCAGCGGGCGCTGGAGAAGGCCGGGTTCCACAGGGAAGGGGTGCTGCGCAGCTACATCG
TCCGCCCCGGCGCCGGCGCCGGCGAGGCCGTGGACGCCGCGGTGTACAGCTTCTTGTCGTCCGACCCTCGTCCACCGCTC
GCGTGATCCTCGCGCCCGATGTTTCGCTCGCTCGCCACTTTGTGTCGTGTAAGCCTCCACTGTAAATAACAAGTTCAAAT
CCCCCCTAAAATAAA-----------------------------------------------------------------
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>chr4B_1_TraesCS4B01G018300
TAAGACTTGAATTGGATTATATAACGCTAACACTTATGTAACAT-TTTCACTCTTTACAATACCT-----------AAAA
TGAGGAGAGAAACTATGAAATCCTTGTCGAAGACCTCCAATTTCTAAAAGGATGACCTTCGTATTTTCTTGATTTTACCA
CCTACTTGCAAGTTGGAAGCTGTGTTCAAGCATATTTGTTGTAGGCTGGACCCTGGACGTGCAGAGC----ATCTTGCCT
TGTGCATCAGAATGTGTGTC------------------------------------------------------------
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--TTCTTTCAAG--------------------------------------------------------------------
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------------------------------------------------------------------------GAAATCAG
CAACATATTCAAGTGTCCCGTCAAGATTGTGGTGCATTGGAGAAGACACCAGTGA-------------------------
-GATATTTGGCGGTGGTGCAGATTTTCTTTAGAAATATTTTGCTTGCTTAGATGAACCAGAGTT-GGAGGCCTTGCTGGA
TGATATTGGGGAATTGGACATTTGAGTTAAAGATATGAAAAATGAATCAACAAAACTGAAATTCATGTGATGTTATTTTG
TCATGTCATTTACCTCTCTTGTTACTTTGGAACCCTATTAGCTGATTATGTAATTTTAGT-ATGTTACATGAACTTTCTG
AGTTATGAATTACTGTGTTATGCAATTGAATTGTAATGTTTTTTCGTGATTTATTTGCTGATTTGCATGTTCAGAATGTG
GAGAAATAGATGAATTGAATGATATTTCCGCTTCCATACGTTAATTGTAACAGTAAAAGTAACAATATGTATGCCTTTGT
TGCATGTAAAAGAGTATCATTTATGTGTTAATGAAGACGTGCGTTGCACGTGCAAGCTTACTAGTAGAATTAAAATGTAG
AGTTTTCTGTTCATTCGTATTTCTCGGTCTTTTATAGATTTTGGAAGAGTGGGGTAGCTATGTTTGAATCAAAATTTGTA
GTACTAATAAATCATTTGGTATCATTATTTTCAATTTTTGTATATGAACAAATTGGATACTGGCTTCAATCCGTATTACT
TGTCGGCCAAACGGATATATCTAGAAAGGGTAACCTTGTTTCTATCAGACCAACAAAGGGAGGAACCAGTGGAAACCAGC
GCCCTCACACGTGTCAGTGTACCATTGGACCAGAAATCCAACCT-AGACCAAATGAAAAATCAGTCAGACTGATTAAAAA
AATATTCACCGGGGGCATGCATTTCCC---------GTCTGTCAGTCTGAAGCA--C--------TCTGGAGTCGATTCA
AAACCGCGGCGAGTAGCTTCTTTGTCCGGTCAAGATCGCCGGCTCATCCACACATAAATAATACACC--CACGCCACAAA
GGGGAGAGGAAGCATGGAGCACCAGCGACGGGAGCCGGCGCCGGAGACGGAGGTCACCCTGCGCGAGTTCACCGAGGCCG
ACGCGGAGGCGCTCTTCGCGTGGGCGTCGGACCCGCGCGTGGTCCTCTTCCAGCGCCGCGAGGCCTACGCGCGCGTCGAC
GAGGCCCGCCGCTACATCCGCGACCACGTCCTCCCGCACCCGTGGTACCGCGCCATCTGCCTCGGCGCCGTGGCGGTGGG
ATCCATCTCCGTCAAGCCCTGCGGCCCCGCGGGGGAGGAGGAGGGCGCGTCGTCGTCGAGGGCGTCCCTGGGCTACCGCG
TCGCGCACGGCTACTGGGGCCGCGGCATCGCGACGCGCGCGGTGGGGATGGCCGCGGCGGCGGCGTTCGCGGAGTGGCTG
TGGCTGGCGCGGCTGGAGGCGGTGGCCGACGTGGAGAACCCGGCGTCGCAGCGGGTGCTGGAGAAGGCCGGGTTCGTGAG
GGAGGGCCTGCTCCGGCGCTACGTCGTGCTCAAGGGCCGGCCCAGGGACATGGTCATGTTCAGC--GTCGTCCGCTCGGA
TCGGGCGCC-------------AAAAT-----TACGAGTGACAGAACCATTTTTGAATTGAATAAGGAGTAGGTGTCGTT
GG------------CTGCTCTGATTGACTCGTACGTAAATTCTCAATCGCCA------------AAGATCACAATCATAC
TACACTAGCAGAGGCAGGCGGGGAGCGATGGACCTTGACGACGGCGACGCGCGGCGGCAAA---------------AGGA
GGCGGAGGGCCCGGTGGTGTCGCTCCGGCCGCTGGG--------------------------------------------
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------------------------------------CCACTGGGGCCGCGGCGTCGCCTCCGCCGCCATCAGGATGGTAA
CCCACTACTGCTAGCTGGTAACGCTGGCGGCGGA--GCTCCGGTCCGGGAGTCCAGCCTGGCGGTT---GACTGACTTGG
TGTGTTCTTGACGGACGCGCGCAGGTGGTTGGGAGGGTGTTCGAGGATCTGCCGGGGCTGGGGAGGCTGGAGGCGGTGAC
GGACGTCGGGAACGCGCGGTCGCAGCGGGCGCTGGAGAAGGCCGGGTTCCACAGGGAAGGGGTGCTGCGCAGCTACATCG
TCCGCCCCGGCGCCGGCGCCGGCGAGGCCGTGGACGCCGCGGTGTACAGCTTCTTGTCGTCCGACCCTCGTCCACCGCTC
GCGTGATCCTCGCGCCCGATGTTTCGCTCGCTCGCCACTTTGTGTCGTGTAAGCCTCCACTGTAAATAACAAGTTCAAAT
CCCCCCTAAAATAAAAATAAAAAAAATAACAAGTTCAAATCTGAAGCCGTGATGATTGCCAGTATGTAATGTAGTCTGAT
CATGTTTGCTGAA-----GGAGTTCCATCAGCAGCAGAGACCTGCTTGGGAACATTCCCATACAAAAATGCTTCAGTCTT
CAACTTTAGAACC-------------------------------------------------------------------
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---------------------------------TATGAACAATCAGATGCAGTGACCTGCCAGGTTAATAAAACCTATCA
GGGGTCAAAA--GCTGAGATTAACCCCTTAGCCCATGATTCCTCGGGGGTCAAAAGCAGTACCAGCAGCACCAATAATGC
AGTAGTAACAGCAACCAAAAGACAAAGAAAAGATGGATACCCAACAACAACAGCAGTACAAGCAGAACTCACTCACCCAT
GAATAATGGCATGACAATCATAATTCATAATCATGTTTGGCCCAGCACCAGCAGTGCACCCACCGATTTTTTTACAAAAA
CAGTGTGATGATTAGGAGCTGTATGTTGAGCTCTCATTATGCCGGTCCGGGCTGCTGCATTTCATTTTATTACTAGTACA
AGTGATGATCGGCCCCCATCGCATGGGCCATGGCAAAACACACAAACCTGTGAATCTTTTTCAAGATGGCTACTTTTGGC
CCCCCTGAATCACTGAACAAGGTGCAGTTGGTTTCAGTTCCATCTTCCCTTTTTGATGAATAAGCAAGCAAGGCAAAGCA
AAGTGTTTGATGGTGATTGAAAAAAAGAC-CCAGAAAATTTGATGATTGATCCAGTGGATATGTCAAAAGGGCCATGCGG
ATGATTTTGCTTTCCCAATAGTTTAGTGAACACAATTTCTTTCAGAGTGCATTCTGGGACAAATGCCTCCATGTCACCTC
TAAATCTAATAGCCAAAATTTGATTTGCAGCACAGGGTAGGATAGAACACTGGCATCGAATTTCATTTCGTTTAACTAGA
ACGTCGAACATCTTTCAGTGATTCAGAGGGCAAAGGTCTTTTAATCCGCGGCAAAAGACCAAAAATCATTCTGTTCTCCA
TGA
>chr4B_1
TAACACTTGAATAGGATTATATAACACTAACACTTATGTAAGGTTTTTCACTTTTTATGATACCCAAGTGGCGAAAATAA
TGAGGAGAGAAACATTGAAATCCTTGTGGAGGACCTCCAATTCCTAAAAGGATGACCTTCGTATTTTCTTGATTTTACCG
CCTACTTCCAAGTTGGAAAATGTGTTCAAGTA-----------GGCTGGACCTTGGATGTCTGTCCAGTGAATCTTGCCT
TGTGCATCAAGACGTGTGTC------------------------------------------------------------
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--TTCTTTCAAGGATGATTGGGAAAGTCAATTTTAAGCATTGTTTACGTTATGCAAATCAAGCGGCACATGTGCTAGCTA
ATTATAGTTACTGTAATAAAGTGTCTATTAGTTAGACTGACGAGCCTCCAGATTGTCTGGTGAGTAAACTCGTAGAAGAT
GTATCCTTGTCGTTTCATCAATAAAGCTAGCCATGATGGCCTTTCATAAAGAAACATGCGTTTTCTTTCAAGGAAATCAG
CAACATATTCAAGTGTCCCGTCAAGATTGTGGGGCCTTGGAGAAGACACCCATGA-------------------------
-GATATTTGGTGGTGGTGCATGTTTTATTGAGGAAGTTTTGCTCTGCTTAGATGAACCAGACTTAGGT---CTTGCTAGA
TG-TATTGGGGAATTGGACATTTGAGTTAAAGATATAAAAAATGAATTAATAAAATCGAAATTCATGTGATATTATTTTG
TCATATCATTTACCTCTCATGTTACTTTGGAACCTTATTAGTTGATTATGTAATTTTAGTAATGTTACATGATTTTTCTA
AGTTTTGAATTACTATGTTATGTCATTGAATTGTAATGTTATATTGTGATTTATTTTCTGCCTTGCATGTT---------
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>chr1B_1
TAAGACTTGAATTGGATTATATAACACTAACACTTATGTAACAT-TTTCACTCTTTACAATACCT-----------AAAA
TGAGGAGAGAAACTATGAAATCCTTGTCAAGGACCTCCAATTTCTAAAAGGATGACCTTCGTGTTTTCTTGATTTTACCA
CCTACTTGCAAGTTGGAAACTGTGTCCAAGCATATTTGTTGTAGGCTGGACCCTGGACGTGCAGATC----ATCTTGCCT
TGTGCATCAGAATGTGTGTC------------------------------------------------------------
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--TTCTTTCAAG--------------------------------------------------------------------
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------------------------------------------------------------------------GAAATCAG
CAACATATTCAAGTGTCCTGTCAAGATTGTGGTGCATTGGAGAAGACACCAGTGA-------------------------
-GATATTTGGCGGTAGTGCAGATTTTCTTTAGAAATATTTTGCTTGCTTACATGAACCAGAGTT-GGAGGCCTTGCTGGA
TGATATTGGGGAATTGGACATTTGAGTTAAAGATATGAAAAATGAATCAACAAAACTGAAATTCATGTGATGTTATTTTG
TCATGTCATTTACCTCTCTTGTTACTTTTGAACCCTATTAGCTGATTATGTAATTTTAGT-ATGTTACATGAACTTTCTG
AGTTATGAATTACTTTGTTATGCAATTGAATTGTAATGTTTTTTCGTGATTTATTTGCTGATTTGCATGTTCAGAATGTG
GAGAAATAGATGAATTGAATGATATTTCCGCTTCCATACGTTAATTGTAACAGTAAAAATAACAATATATCTGCCCTTGT
TGCATGTAAAAGAGTATCATTTATGTGTTAATGAAGACGTGCGTTGCACGTGCAAGCTTACTAGT---------------
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>chr7B_1
TAAGACTTGAATTGGATTATATAACACTAACACTTATGTAACAT-TTTCACTCTTTACAATACCT-----------AAAA
TGAGGAGAGAAACTATGAAATCCTTGTCGAGGACCTCCAATTTCTAAAAGGATGACCTTCGTATTTTCTTGATTTTACAA
CCTACTTGCAAGTTGGAAACCGTGTTCAAGTATATTTATTGTAGGCTGGACCCTGGACGTGCAGAGC----ATCTTGCCT
TGTGCATCAGAATGTGTGTC------------------------------------------------------------
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--TTCTTTCAAG--------------------------------------------------------------------
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------------------------------------------------------------------------GAAATCAG
CAACATATTCAAGTGTACTGTCAAGATTGTGGTGCATTGGAGAAGTCACCAATGA-------------------------
-GATATTTGGCGGTGGTGCAGATTTTCTTTAGAAATATTTTGCTTGCTTAGATGAACCAGAGTT-GGAGGCCTTGCTGGA
TGATATTGGGGAATTGGACATTTGAGTTAAAGATATGAAAAATGAATCAACAAAATTGAAATTCATGTGATGTTATTTTG
TCATGTCATTTACCTCTCTTGTTACTTTGGAACCCTATTAGCTGATTATGTAATTTTAGT-ATGTTACATGACCTTTTTG
AGTTATGAATTACTGTGTTATGCAGTTGAATCGTAATGTTTTTTCGTGATTTATTTGCTGATTTGCATGTTCAGAATGTG
GAGAAATAGATGAATTGAATGACATTTCCGCTTCCATACGTTTATTGTAACAGTAAAAATAACAATATGTATGCCCTTGT
TGCATGTAAAAGAGTATCATTTATGTGTTAATGAAGACGTGCGTTGCACGTGCAGGCTTACTAGT---------------
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>chr3B_1
TAACACTTGAATAGGATTATATAACACTAACACTTATGTAACATTTTTCACTTTTTATGATACCCAGGTGGCGACAAAAA
TGAGGAGAGAAACAGTGAAATCCTTGTGGAGGACCTCCAATTCCTAAAAGGATGACCTTCGTATTTTCTTGATTTTACTG
CCTACTTCCAAGTTGGAAAATATGTTCAAGTA-----------GGCTGGACCTTGGATGTCTGTCCAATGAATCTTGCCT
TGTGCATCAAGATGTGCGTCTTCTTTCAAGGATGATTGGGAAAGTCAATTTTA-GCATTGTTTACGTTATGCAAACCAAG
CAGCGCATGCGCTA-CTAATTATAGTTACTGTAATAAAGTGTCTATTAGTTGAACCGATGAGCCTCCAGATCGTCCGATG
AGTAAGCTCGTAGACGATATATATCCATGTCGTTTGATCAATAAAGCTAGCCATGATGGCCTTCCATAAAAAACGTGG--
TTTTCTTTCAAG--------------------------------------------------------------------
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------------------------------------------------------------------------GAAATCAG
CAACATATTCAAGTGTCCCATCAAGATTGTGGGGCCTTGGAGAAGACACCCATGA-------------------------
-CATATTTGGTGATGGTGCATGTTTTCTTTAGGAAGTTTTGCTCTGCTTAGATGAACCAAACTT-GGAGGCCTTGCTAGA
TG-TATTGGGGGATTGGACATTTGAGTTAAAGATATAAAAATTGAATTAATAAAATCAAAATTCATGTGATATTATTTTA
TCATATCATTTACCTCTCGCGTTACTTTGGAACCTTATTAGTTGATTATGTAATTTCAGT-ATGTTACATGATTTTTCGA
AGTTTTGAATTACTATGTTATGCGATTGAATTGTAATGTTATATTGTGATTTATTTTCTGCCTTGCATGTTTGGAATGTG
GAG-----------------------------------------------------------------------------
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>chr3B_1
TAACACTTGAATAGGATTATATAACACTAACACTTATGTAACATTTTTCACTTTTTATGATACTCAGGTGGCGACAAAAA
TGAGGAGAGAAAC----AAATCCTTGTGGAGGACCTCCAATTCCTAAAAGGATGACCTTCGTATTTTCTTGATTTTACTG
CCTACTTCCAAGTTGGAAAATATGTTCAAGTA-----------GGCTGGACCTTGGATGTCT-------------TGCCT
TGTGCATCAAGATGTGCGTCTTCTTTCAAGGATGATTGGGAAAGTCAATTTTAAGCATTGTTTACGTTATGCAAATCAAG
CGGCGCATGTGCTAGCTAATTATAGTTACTATAATAAAGTGTCTATTAGTTGAACTGACAAGCCTCTAGATTGTCTGATG
AGTAAGCTCGTACACG--ATATATCCATGTCGTTTTATCAATAAAGCTAGCCATGATGGCCTTCCACAAAAAAACATGTT
TTTTCTTTCAAG--------------------------------------------------------------------
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------------------------------------------------------------------------GAAATCAG
CAACATATTCAAGTGTCCCGTCAAGATTGTGGGGCCTTGGAGAAGACACCCATGAGATTTTTTTTGTGGGTACACCCATG
AGATATTTGGTGATGGTGCATGTTTTCTTTAGGAAGTTTTGCTCTGCTTAGATGAACCAGACTTAGGAGGCCTTGCTAGA
TG-TATTGGGGAATTGGACATTTGAGTTAAAGATATAAAAATTGAATTAATAAAATCAAAATTCATGTGATATTATTTTG
TCATATCATTTACCTCTCATGTTACTTTGGAACCTTATTAGTTGATTATGTAATTTGAGT-ATGTTACATGATTTTTCTA
AGTTT-GAATTACTATGTTATACAATTGAGTTGTAATGTTATATTGTGACTTATTTTCTGCCTTGCATGTTTGGAATGTG
GAG-----------------------------------------------------------------------------
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>chr4D_787
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------------------------------------------------------------------------AAATGTAG
AGTTTGTTGTTCTTTGC-ATTTCTCAATCTTTTATAGATTTCGGAAGAGTTAGGTAGCTTTGTTTCAGTCAAAATCTGTA
GTACTAATAAATCATTTAATATCATTATTTTCAGTTTTTTTATACGGACACGTCAGATACTTCCTCCGATATGTATTACT
TGTCT--CAAACGGACGTATCTAGAAGGAGTTACAGAAGAG-------------------AGAAACCACTGGAAACCAGC
G-CATCACACGTGTCGGTGTACCATTGGACC--------------AGACCAAATGAAAAATCAGTC-GACTGTTTAAAAA
ATTATGCACCGGGCGCATGCATTTCCCTTGGTCTCTGTCTGTGAGTCTGAAGCACTC--------TCTGGAGTCGATTCA
AAACCGCGGCGAGTAGCTTCTTTGTCCGGTCAAGATCGCCGGCTCATCCACACATAAATAATAGTAGTACACGCCACAAA
-GGGAGAGGAAGCATGGAGCAACAGCGACGGGAGCCGGCGCCGGAGACGGAGGTCACCCTGCGCGAGTTCACCGAGGCCG
ACGCGGAGGCGCTCTTCGCGTGGGCGTCCGACCCGCGCGTCGTGCTCTTCCAGCGCCGCGAGGCCTACGCGCGCGTGGAC
GAGGCCCGCCGCTACATCCTCGACCACGTCCTCCCGCACCCGTGGTACCGCGCCATCTGCCTCGGCGCCGTGGCGGTGGG
CTCCATCTCCGTCAAGCCCTGCTGCCCCGCGGGGGAGGAGGGGGAGGGCGCGC---CGAGGGCGTCCCTGGGCTACCGCG
TCGCGCACGGCCACTGGGGCCGCGGCGTCGCGACGCGCGCGGTGCGGATGGCCGCGGCGGCGGCGTTCGCGGAGTGGCCG
GGGCTGGCGCGGCTGGAGGCGGTGGCCGACGTGGAGAACCCGGCGTCGCAGCGCGTGCTGGAGAAGGCCGGGTTCGTGAG
GGAGGGCGTGCTCCGGCGCTTCGTCGTGCTCAAGGGCCGGCCCAGGGACATGGTCATGTTCAGC--CTCGTCGACTCGGA
CCGCGACGAGAGGGCCAAGCCAAAATTATTACTACAAGTGAAAGAACCA--TTTGAATTGAATAAGGAGTAGGTGCAAGA
TAATGTCGTTGGCTCTGCTGTGGTTCACCCGTACGTAAATTCTTAATCGCCA------------AA------------AC
TACACGGGCAGAGGCCGGCGGGGAGCGATGGACCCT---GACGGCGACGCGCGGCATCAGCAGCGGCGGCGACAGGAGGA
GGAGGAGGGCCCGGTGGTGTCGCTCCGGCCGCTGGGCCTGGCGGACGTGGACGACTTCATGGCGTGGGCGTCGGACGAGC
GCGTGATGCGCCACCTGAAGCGCCCCATGTGCGCGACGAGGGAGCAGGCCGTGGCGCAGATCAGGGACACCGTGCTCGGC
CACCCGTGGTTCCGCGCCGTCTGCGTGGCGGGGCGCCCCGTGGGGCAGGTCTCCGTGTGGCCCTACCCCGACGACGGCGG
CCACAGGGCCAACCTCGGCTACGCGCTGGCGCACGACCACTGGGGCCGCGGCGTCGCCTCCACCGCCATCAGGATGGTAA
AAACGTAG---TAGCTGGTAACGCTGGCGGAGCTCCGCTCCGGTCCGGCCTCTCGCGTGGCGTGAGATAGACTGACTTGC
TGTGTTCTTGG----CGTGCGCAGGTGGTGGGGAGGGTGTTCGAGGAGCTGCCGGGGCTGGGGAGGCTGGAGGCGGTGAC
GGACGTCGGGAACGTCCGGTCGCAGCGGGCGCTGGAGAAGGCCGGGTTCCAGAGGGAAGGGGTGCTGCGCAGCTACATCG
TCCGCCCCGGCGCCGGCGCCGGCGAGGCCGGGGACGCGGCGGTGTACAGCTTCTTGTCGTCCGACCCACGTCCTCCGCTA
GCGTGA---TCGCGCCCGCTGTT----TCGCTCGCCACTTCGTGTCGTGTAAACCTCCACCGTTAATAACAG--------
--------------------------------GTTCAAATCTGAAGCCGTGATGATTGCCAGTATGTAG-----------
--TCTCATCATGATTGTCGGAATTCCATCAGCAGCAGAGACCTGTTTGGGAACATTCCCATAGATT--TGCTTCAGTCTT
CAACTTTAGAACC-------------------------------------------------------------------
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---------------------------------TATGAACAATCAGATGCAGTGACCTACCAGGTTAATAAA-CCTATCA
GGGGTCAAAA--GCTCAGGTTAACCCCTT-GCCCATGATTCCTCAGGGGTCAAAAGCAGTAC---CAGCACCAATAATGC
AGTA---ACAGCAACCAAAACACAAAGAAAAGATCGATACCCAACAC---CAGCAGTACAAGCAGAACTCACTCAGCCAT
GAATGATGGCATGCCAATCATAATTCATAATCATGTTTGGTCCAGCACCAGCAGTGCACCCACCCATTTTTTTACACAAA
CAGTGTGATGATTAGGAGCA----GTTGAGCTCTCATTATGCTGGTCCGGGCTGCTGAATTTTATT---TTAGTAGTACG
AGTGAT---CGGCCCCCATGGCATGGGCCATGGCAAACCACACAAACCTATGAATCTTTTTCACGATGGCTACTTTTGGC
CCCCCTGAATCACTGAAAGAGGTGCAGTTGGTCTCAGTTCCATCCTCCC-TTTTGATGAATAAGCAA-----GCAAAGCA
AAGTGTTTGATGGTGATTGAAAAAA-------------------------------------------------------
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>chr4A_1010
AAG-----------------------------------------------------------------------------
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--------------------------------------GAG-------------------AGGAACCACTCGAAACCAGC
A-CCTCACACGTGTCAGTGTACCATTGGACCCGAAAATTCAACCGAGACCAAATGAAAAATCAGTCAGACTGATTAAAAA
AAGATTCACCGGG-GCATGCATTTCCCTTGGTCTCTGTCTGTGAGTCTGAAGCA--CTCTGGAAGTCTGGAGTCGATTCA
AAACCGCGGCGAGTAGCTTCTTTGTCCGGTCAAGATCGCCGGCTCATCTACACATAAATAATAC--GTACACGCCACAAA
-GCGAGAGGAAGCATGGACCAACAGCGACGGGAGCCGGCGCCGGAGACGGAGGTCACCCTGCGCGAGTTCACCGAGGCCG
ATGCGGAGGCGCTCTTCGCGTGGGCGTCGGACCCGCGCGTGGTGCTCTTCCAGCGCCGCGAGGCCTACGCGCGCGTCGAC
GAGGCCCGCCGCTACATCCTCGACCACGTCCTCCCGCATCCGTGGTACCGCGCCATCTGCGTCGGCACCGTGGTGGTGGG
CTCCATCTCGGTCAAGCCCGCGGG------------GGAGGAGGGCTCGTCGTCGTCGAGGGCGTCCCTGGGCTACCGCG
TCGCGCACGGCTTCTGGGGCCGCGGCATCGCGACGCGCGCGGTGCGGATGGCCGCGTCGGCGGCGTTCGCGGAGTGGCCG
TGGCTGGCGCGGCTGGAGGCGGTGGCCGACGTGGAGAACCCGGCGTCGCAGCGCGTGCTGGAGAAGGCCGGGTTCGTGAG
GGAGGGCGTGCTCCGGCGCTACCTCGTGCTCAAGGGCCGGCCCAGGGACATGGTCATGTTCAGCCTCTCGTCGTCTCGGA
CCGCGACGAGAGGGCCATGCCAAAATT-----TACAAGTGAAAGAACCA--TTTGAATTGAATAATGAGCAGGTATCGAA
AAGCAAGACGATAAAACGTTG----------------AACTCTCAATCGCCAAAGACTACAATCAA------------AC
TACACGAGCAGAGGCGGGCGGGGAGCGATGGACCCT---GACGGCGACGCGCGGCATCAGCAGCGGCGGCGGCGACCGGA
GGAGGAGGGCCCGGCGGTGTCGCTCCGGCCGCTGGGCCTGGCGGACGTGGACGACTTCATGGCGTGGGCGTCGGACGAGC
GCGTGATGCGCCACCTGAAGCGCCCCCTGTGCGCGACGAGGGAGCAGGCCGTGGCGCAGATCAGGGACACCGTGCTCGGC
CACCCGTGGTTCCGCGCCGTCTGCGTGGCGGGGCGCCCCGTGGGGCAGGTGTCCGTGTGGCCCTACCCGGACGACGGCGG
CCACCGGGCCAACCTCGGCTACGCGCTGGCGCACCGCCACTGGGGCCGCGGCATCGCCTCCGCCGCCATCAGGATGGTAA
CTCCGT-----TAGCTGGTAACCCGGGCGGAGCTCCGGTTCGGCCTCGCGCGTCGAG--------T---GACTGACTTGC
TGTGTTCTTGG----CGCGCGCAGGTGGTGGGGAGGGTGTTCGAGGAGCTGCCGGGGCTGGGGAGGCTGGAGGCGGTGAC
GGACGTCGGGAACGCGAGGTCGCAGAGGGCGCTGGAGAAGGCCGGGTTCCAGAGGGAAGGGGTGCTGCGCAGCTACATCG
TCCGCCCCGGCGCCGGCGACGGCGAGGCCAGGGACGCGGCGGTGTACAGCTTCTTGTCCTCCGACCCTCGTCCTCCGCTC
GCGTGA---TCGCGCCCGCTGTTTCGCTCGCTCGCCACTTCGTGCCGTGTAAACCTCCACTGTTAATAACAA--------
--------------------------------GTTTAAATCTGAAGCCCTGATGATTGCCAGTATGTAG-----------
--TGTTTGCTGAA-----GGAATTCCATCAGCAGCAGAGAAGAT---------ATTCCCATGGCTT--TGCTTCAGTCTT
CAACTTTAGAAATCATTCATCTCCTGTATACGATGTATAGTGAGCTGGGCCGGCCCATCTTTCCCTTGTACAAAATTCGA
CGTGATAACCAACCGGCGACTTGAGCACTTGTGTTTAGGTAGTTCTGTCTTGTCCTTTTCTTCCTTGCTCTTTCCTGTTT
CTGATTTCCTTTTTTTCTTAGTTTTTCAAACATTTTTTTCGGTTTTCATTTCCCTTTTTTTCTTTTTAGTTTTATTTTCC
TTTTTGTTTTACTTTTTCTTTTGAATGTGCAAACTATTTCAGTTTTCTTTAAAAAAAATCAATGAACCTTTTTTTTAATA
TTGATGAATCTTTCTCTAGATGAATGATTTCTTTTTTAGAGTAGATGATTTTTAAGATGCATGATTTCTTTTTCCGAGCA
TGATTCAAGATGACTCTTTATTCATTTCCTGCAAAAGTTGAGTAGAGATTTCTTTTTTTCTAAATTGATGAATCTTTATT
CAAGATGAATGATTTCTCAAGATGAATAAAGATTTTTTTTTCTAAATTGATGAATCCTTCTAGCAACCGAACACCCTTCA
TTGAACATGGTCTAGTTTTGGATATTCTTGAAATGACCCCAACTTTTGCAGGAAGGTGGGCATTGCCCATGGTAGGCACC
AGTGATAGGTTTGAATGATTTCTGACACCGCATGCAACTTGCGACACGCCCGATCATTTATCGGTCTTTTTTCATCGGAA
AAACTCCAGAAAATGCAGAACTTGTTGAAAATCCAAACAACTTGGCATGGTGTCTTGAATTGGTCATACAAGGCCATGAA
AAAATTGGGGCCATTTCAAGGATGTGAAGAAAACAACGTGCTCTCAAAGAGAGCCTTCTGGCAACCGAACACCCTTTATT
GAACATGGTCTAGTTTTGGACATTCTTGAAATAACCACAACTTTTCTAAGTAGGTGAGCATGCCCATGGTAGACATCCAT
GTCAAGTTTGAATGATTTCTGACATCGTATACAAGTCGCGACACGTCCGACCATTTATCGACCTTTTTTGGCTCGCAAAA
TTCATCAAAACAAAAAAAAAGTCGGCATGGTGCATTTAGTTGGCCATACAAGGTCATATAAAAAATTGGGGCAATTTCAT
GGATGTCGAAACACAACGTGCTCTCAGGCGGAGCTTTCTGACCTACCTGAATACACTCATTTGAACATGGTCTATTTTTA
GATATCCTTCAAATGACCACAACTTTTCCAAGAAGTTGAGCATGCACATGGTAGGCATCTATGTCAAGTTTGAACTATTT
TCGACAGTGTATGCAAGTTGCCACATGTCCGAGCATTTATTTTCTTTTTTTTCCGAGAAAACTCTAGAAAATGCAAAAAT
TATTGAAAACCAAAACAACTTGCCATGGTGTCTTGAATTGGCCATACAAGGCCATGGGAATAATTGGGGCCATTTAATGG
ATGTCTATTTTTAGATACGCTTGCAATAACCCAACTTTTGCAAGCAGGTGGGCCTACCCATGGTAGGAATCCATGCCAAG
TTTGAACGATTTTCGACACCGTATGCAAGTTGCGACACGTTCGGCAATTTATCACCCTTTTTTGACAAAGAAAGCTTCAG
AAAATGTAAAATTTGTAGAAAACCAAAAAACCTTGGCATGGTGCCCTGAATTGTTGCCAGTGAAAAAAAATTAGGTCATT
GGACGGATGTCGAGAAAAAACATGCTCCCAAACGGAGCCTTCTGACCTACCCCGACACCCTACGTTGAACATGGTGATTT
TTCTACACGAATACAAAAAAATCGAGCAAATTGAAAAAAATTGTTACAAATTTTTATTCGTAGTTTTCTTGAAATTCCAA
ATTTAATAGTGACTTTCCTAAAATGTTAAAAGAAAAATGTTCGGGTTCAAAATTTTGTTAGCTCTTTGTAAAAATGTTTG
TGTTTTGACATTATGAGCAATTTGAAAATACAAAAACATTCCAAGGAATTCATAAAATGTTCGCATTTTGAAATAATTGT
TCATAGTTTCAGAAAATGTCCATGTTTTCAGTTTTGTTCCTCTTACAAGAAAATGTTCGTATTTTAAATTTTTTTTGTAG
TTTCAAGAAATGTTCTCACTTTCAATTGTGCTCTTATTTTTCTAAAACAAAGTTTGAGGGTCTGATTCGTTGTTCACAAA
AGGTTTGTGTTTAAAAAAATATGTTCACAGATTTTGAAAATGTTTGGGTTTAAAAAAAATTACTTTGTGAAACAGAAATT
CACATACGAATTTTCGAAAAAAATAGATCGTTTTGGACTAGTGATGTTATGCACTCGCAGGAGCTTGTGTGTTAGATCCG
CGCACCCATTTATGTATTTGTCAATTGGTGTTAAAGTGTTGCCGCTTTCACTAATTCTTTAGGCGTGGCAGTCTGTAGCA
CTTGAGTTAGGCAGCCGAAGTGGCTAGCAGCGGTTGGAATTATATGGCTGGTCGTGAGTTGGATACCCATATAGGGCGTA
ATTTTTGTTGATTTTCCAGCGCAAATGGGCCGGCCCAGGTTAGCTGTGCCTGTGCCGTATTCCAGCGTAGAGGAGGTCTT
CCTACGTACAAAACTGGATATGATTTGTCAAAAGTCTAAATTACCCTTTATACGCTTTGTGAGGGGGGGTGTACCGAAGC
ATTCCTCTTGTTTGTTTAGATCACTATTTTAGTGATCTAAATATAAGATCGTTTCAATCACTACTTTAGTGATTTAAATA
TAAGACCGTTAAGAAAATAGTGGTTCAAACTTCAAAGTCCATAACCTAGCTAGGTTCGATAGACTGATAAACTGTGTCGA
AACATGGAAAATGGAAAGTCACTAGAACTAGCATATGAACAATCAGATGCAGTGACCTGCCAGGTTAATAAA-CCTACCA
GGGGTCAAAAAAGCTCAGATTAACCCCTT-GCCCATGATTCCTCAGGGGTCAAAAGCAGTAC---CAGCACCAATAATGC
AGTA---ACAGCAACCAAAAGACAAAGAAAAGATCGATACCCAACAGGCAA--CAGTACAAGCAGAACTCACTCACCCAT
GAATGATGGCATGACAATCGTAACTCATAATCATGTTTGGTCCAGCACCTGCACTGCACCCACCCAATTTTTTACACAAA
CAGCGTGATGATTAGGAGCA----GTTGAGCTCTCATTATGCCGGTCCGGGCTGCTGCATTTTGTT---TTAGTACGAGT
G---------------------ATGGGCCATGGCAAACCACACAAACCTATGAATCTTTTTCAAGATGGCTACTTTTGGC
CCCCTTGAATCACTGAACAGGGTGCAGTTGGTTTCAGTTCCATCCTCCC-TTTTGATGAATAAGCAA-----GCAAAGCA
AAGTGTTTGATGGTGATTGAAAAAAAAAATCCAGAAAATTTGATGATTGA------------------------------
--------------------------------------------------------------------------------
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>SNPs
-------------------------S------------------------------------------------------
------------------------------S-------------------------------------------------
------------------S-------------------------------------------------------------
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----------------------------------------------------------S----------------S----
-----------------------------------------------------------------SSSSSSS--------
-----SS-----S--SSS-------SS--------------S--------SS-------S-----S-S-------S----
-----------------SS--------------S-----S----S-S---SS-SS------SS--S-S--SS--------
----SSS--------SS---------S-S--S--SSSSSSSSSSSSSSSSSSSSSSSSSS--------S-----------
-S-----------------------------S----SSSS-S-S------------------------------------
-------------S----------------------------S-------------------------------------
----------------------------------------------------------------SSS-------------
S--------------------S----------------------------------------------------------
-------------------------------------------S------------------------------------
-------------------S------------------------------------------------------------
S-------------------------------------------------------------------------------
--------------------------------------------S---------------------------------S-
-----------------------------------------------------S--------------------------
-------S----------------------------------------------------------S-----SS------
S--S-SSSS----------------S---------S-----S-------SS---------------------------SS
SS-----------------S--S--S--S-------------------------------------SSSSSSSSSSSS--
-----S---------S------------------S-SSS----------------SS--SS-------------------
--S-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-S-SS--SSSS-------------------S-SS--------------SSSSS-SSSSS-SSS-S--------------S
----------SSSSS--------------S-----------------S--------------------------------
---------------------------------------------------S----------------------------
------------------------------S------S-----------------------------------S------
------SSS---------S---------------------S-----------S----------S--------SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------SSSSSSSSSSSS
SS-------------------S----------------------S-----------------S-SSSS------------
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------------------------------------------------------------------------S-------
---------------S-------------S--------------S-----------------SSS---------------
----SSS---------------------------S-----------SSS-------------------------------
----S-----------------------------------S-----------------------S-----------S---
-------------------SSSSS--------------------------------------S---SSS---S------S
------SSS----------S-----------------S-----------S------------------------------
--------------------------------------------S----S-----------------SSSSS--------
--------------------------S-S---------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS
>forward_1456
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----------------------------------------------------------------------------TACT
TGTCGGCCAAACGGAT----------------------------------------------------------------
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>reverse_3241
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----------------------------------------TGTGTCGTGTAAGCCTCCAC--------------------
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>forward_1643
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-----------------------GCATGCATTTCCCGTCTGTC-------------------------------------
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>reverse_6365
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--------------------------------------------GGGGGTCAAAAGCAGTACCA----------------
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---
