>input_sequence_50039
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----------------------------------------------------------------ATGGCACCAACGTCCC
TGCAGAGGCCGAGGAAGCCGAGGTGCCCCTCCCACCCCATGCTCTCTCTCTCCCCTGCCCTCCTCTCCCTCCTCCTCCTA
GTCCCCTTCCTCTACCTCCTCATCCACCGTTCCGCGTGCTCCCCGCCCTTCAGCAGCCTCACGACCGCCAGGCGTTCATC
CTCGAGCGTCAGCGGCTTCGCCGGAGACCTTCGCGACATCGAGTTCTCGTGGAACCACCTGCCGTTCATGTCGTCGAAGC
CGCCCCTCGCCAAGCTCAAGATCGCCGTGTTCTCGCGGAAGTGGCCCGTGGCCACGGCCCCCGGCGGCATGGAGCGGCAC
GCGCACACGCTGCACACGGCGCTCGCCGCGCGGGGCCACCGCGTCCACGTGTTCACCTCGCCTCCACCGCATACCGAGGC
CGCGCCCTCGCCCTCCGCCGATGGTCCTCAGCTGCATTTCCTTGACGGCACCCCCGGCCAGTGGCGGTGCGACGAGGCGT
GGAAGCTGTACGAGGCTGAGGGCGACAACGATCCATTCGACGTCATCCACTCCGAGAGCGTGGCGGTGTTCCACCGGTAC
GCGCGCGGCGTGCCCAACCTGGTGGTGTCGTGGCACGGAATCTCCCTGGAGGCGCTGCACTCGGGCATCTACCAGGACCT
CGCCCGCGGCGAGGACGAGCCCATGTCGCCGGCGTTCAACCAGAGCCTGTCGCAGTCGGTGCACCGGGTGCTGTCCGAGG
TGCGCTTCTTCCGGAGCTACGCGCACCAGGTGGCCATCAGCGACTCCACCGGGGAGATGCTCCGCGACGTGTACCAGATC
CCCGGCCGCCGCGTGCACGTAATCCTGAACGGTGTGGACGAGGCGCAGTTCACTCCGGACACGGAGCTCGGCCGCGCCTT
CCGGGAAGAGATCGGGCTCCCCAAGAGCGCCGACCTCGTGCTCGGCGTCTCCGGGAGGCTCGTCAAGGACAAGGGCCACC
CGCTGCTCTACGAGGCCTTCTCCAAGCTCGCCCTCCGCCACCCGAACGTGTACCTCCTCGTCGCCGGCAAGGGGCCGTGG
GAGTCGAGGTACATGGACCTGGGACGCAACGCCAAGGTGCTTGGCGCGGTGCCGCCTGGGAAGCTCAGGGCGTTCTACAA
CGCGCTGGACGTGTTCGTGGACCCGACGCTGCGGCCGCAGGGCCTGGACCTGACGCTCATGGAGGCGATGCAATGCGGCA
AGCCGGTGGTGGCCACGCGGTTCCCGAGCATCAAGGGAAGCATCGTGGTGGACGAGGAGTTCGGCCACATGTTCGCGCCC
AACGTGGAGTCGCTGCTCGAGAGTCTGGAGGCGGTGGTGCAGGATGGCGCCCGGCGCGCCGCGGAGCGCGGCCGGGCGTG
CAGGGAGTACGCCAGGTCCATGTTCGCGGCCACCAAGATGGCACTAGCGTACGAGAGGCTCTTCCTTTGTGTCAAGAACG
AGACCTTCTGTGCGTACCCTTCTGAGTTTGATTAG---------------------------------------------
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>chr3A_1_TraesCS3A01G236400
TGTTCGTAACTTGTTTTTAAGAAAATGTACATCATGTATTTGAGAAATGTGCAACGTGTATAAAAAATCACGTGTACAAT
TGAGCACTGAAAAAAATATACATGTGCTGAAGAAATATGAAAACTGAGAAAGAAACATAAAGAAAATGAAGAAAACCAAG
GAAAAACAAAAAAACAGAAGCATAACT-AAAAAAAGGAAAACAAAACCTGGGAAAAAAAGAAAAGGAAACCAATGAAAAA
ACAAAAAAAT------AAAATAAAACAAGAAAACCTGAGAAGTGCAAAAAAGAAAAGAAAACGCAGAAAACAGGAAAAAC
CG-GAGAAAACTGAGAAGAAACAAAAAACTGAAGAAAAAACCCCAGTAAAAACCTGGAATAAAACGAAGAAAAAAAGAGA
AAAAATGAAGAAACGTGTGAAGAAACAAAAAC------------------------------------------------
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------AAAAACAGAGAAGTAAAGCGCTAGCAGCGAACGAGCGAGCGCCTCGATCGCT-AGAACGGGCCGGCCAAATACT
GTAGGCGGGACAGAAGGTACTCTCGCTATAGGCGAGATATGGCGGCAGAAGCGCTCGCCTCGCTCGATTCCAGTGATTCG
CATCGGACGGATCGGGATACGTTGGTACCTCTTGCAATCTGGCAACTGTTCGCCATTTAATTTTTCCTCTCCCCATTTGC
CCCCAAAAAATCTAAATATTTGTGCGTTAATTTTGCTAAAAAAAATCCTGTGCCATAA----------------------
--------TTGAAAATAAAAATCTGAAACTAGGGGAATTCACATTGCACGATGATCACATCCCCCATGGCCATCTTCCTA
AGTAACTTCAGGCATGGAAAGCAAGCATGAAGTTCGCACCCCA-ATGTCAACACCTTACAACGCACTTCAACTCCACTCT
CCCTCCTTCCACAACATCTCATAAACTGCTGTATTTC----------CCTTCTCCCTTGTTTCCATCTTCCTTTGTATGC
AGCCTTCATGCATGCATGACTGACTGTCTAGCTAGCTCGAGCAGTAGAGCTAGTGCATGACGTGATGGCACCAACGTCCC
TGCAGAGGCCGAGGAAGCCGAGGTGCCCCTCCCACCCCATGCTCTCTCTCTCCCCTGCCCTCCTCTCCCTCCTCCTCCTA
GTCCCCTTCCTCTACCTCCTCATCCACCGTTCCGCGTGCTCCCCGCCCTTCAGCAGCCTCACGACCGCCAGGCGTTCATC
CTCGAGCGTCAGCGGCTTCGCCGGAGACCTTCGCGACATCGAGTTCTCGTGGAACCACCTGCCGTTCATGTCGTCGAAGC
CGCCCCTCGCCAAGCTCAAGATCGCCGTGTTCTCGCGGAAGTGGCCCGTGGCCACGGCCCCCGGCGGCATGGAGCGGCAC
GCGCACACGCTGCACACGGCGCTCGCCGCGCGGGGCCACCGCGTCCACGTGTTCACCTCGCCTCCACCGCATACCGAGGC
CGCGCCCTCGCCCTCCGCCGATGGTCCTCAGCTGCATTTCCTTGACGGCACCCCCGGCCAGTGGCGGTGCGACGAGGCGT
GGAAGCTGTACGAGGCTGAGGGCGACAACGATCCATTCGACGTCATCCACTCCGAGAGCGTGGCGGTGTTCCACCGGTAC
GCGCGCGGCGTGCCCAACCTGGTGGTGTCGTGGCACGGAATCTCCCTGGAGGCGCTGCACTCGGGCATCTACCAGGACCT
CGCCCGCGGCGAGGACGAGCCCATGTCGCCGGCGTTCAACCAGAGCCTGTCGCAGTCGGTGCACCGGGTGCTGTCCGAGG
TGCGCTTCTTCCGGAGCTACGCGCACCAGGTGGCCATCAGCGACTCCACCGGGGAGATGCTCCGCGACGTGTACCAGATC
CCCGGCCGCCGCGTGCACGTAATCCTGAACGGTGTGGACGAGGCGCAGTTCACTCCGGACACGGAGCTCGGCCGCGCCTT
CCGGGAAGAGATCGGGCTCCCCAAGAGCGCCGACCTCGTGCTCGGCGTCTCCGGGAGGCTCGTCAAGGACAAGGGCCACC
CGCTGCTCTACGAGGCCTTCTCCAAGCTCGCCCTCCGCCACCCGAACGTGTACCTCCTCGTCGCCGGCAAGGGGCCGTGG
GAGTCGAGGTACATGGACCTGGGACGCAACGCCAAGGTGCTTGGCGCGGTGCCGCCTGGGAAGCTCAGGGCGTTCTACAA
CGCGCTGGACGTGTTCGTGGACCCGACGCTGCGGCCGCAGGGCCTGGACCTGACGCTCATGGAGGCGATGCAATGCGGCA
AGCCGGTGGTGGCCACGCGGTTCCCGAGCATCAAGGGAAGCATCGTGGTGGACGAGGAGTTCGGCCACATGTTCGCGCCC
AACGTGGAGTCGCTGCTCGAGAGTCTGGAGGCGGTGGTGCAGGATGGCGCCCGGCGCGCCGCGGAGCGCGGCCGGGCGTG
CAGGGAGTACGCCAGGTCCATGTTCGCGGCCACCAAGATGGCACTAGCGTACGAGAGGCTCTTCCTTTGTGTCAAGAACG
AGACCTTCTGTGCGTACCCTTCTGAGTTTGATTAGTTTTCTCACCAGCATGTGCACTTGCTTAGTGATTTATGGCACACT
AATAATCATAAATACAGTATGTTAT---TTAGTATTTTCTTTTTCTCTCTCCTGCTTCCCACATGAACTGCCAGCTAT-G
ATACTAAACGGGTCTAAATTGTTTTAGAGAATGAGCGACACCTTATTCATAGCATAACAACTTTATGCTGCTTGTAATGG
TTGGTATTATAAGTATGGTACTAGTGTGTAATAATATATTCCTAATGCATAGTATTATATATCTCTACTTTTAATGGACG
AGTTGGTGAATAGTCTCCGCGGTTTATTTTCGCTGGGTT-TTTTCGTCTCTCCTCCCACCA---CCTCCCACCCTGGTCC
ATCGGTTTATTTTTCTCTCCACTCTTTATTACAACCAGAACTTTTCTAACGTATAACAAATCACGGATCTAACTTCCTTA
AATTATGCAAATCAATCGATTTTTCTTATTGGTTCAATTTGTCTTAGGAAACAAATTTTAGATTTTCAGGAAACAAATAA
TACATTTTAATCTAACTTTCCTAACTTATCTAAATCAATCGATTTCTCTTATTAGTGAAATTTGTTTTAGGAAACAAATA
A---------------------------------------------------------------CAGACACGTCACAAAC
GGGCATGTACTGATATCACATTACCAAACAATAAAACCCCATTTGCATAGAAATCAGTTCAAAAA-TCCTAACTTTCCTA
AATTTTTACCTTTCCTTGATAACAACCAATATTTCCTATCTTTTCCACCTATTGAAGGAAATCACCCATCCATCAAAATT
AGCATTTTTTTTT--GGAATGAGATCTCCGGGTTATGAAATTTTTTTGTGACTCTTTCCAATTGTGACCTCTCCTTCCAC
TCCGGCTCCTTCTCGCATAAACACCTCCACTACAGCCAGGTGACACCACCCCAGACCTCCTACCTCTCCACACCTTCTCC
GCCACCTCCTTCTCGTACTTCATTAGCAATCCCTCCGCCACATTTGTCCACGGCGGTGTCGAGGGCATG-
>chr3D_1
TGTTCATAACATGTTTTTAAGAAAATATACATCATGTATTTGAGAAATGTGCAACGTGTATAAAAAAATCACTTGTACAT
TGAGCACTGAAAAA-ATATACATGTGCTGAAGAAATATGAAAACTGAGAAAGAAAGATAAAGAAAATGAAGAAAACCATG
GAAAAACAAAAAACT-GAAGCATAACGAAAAACAAGGAAAACCAAATCCGGTAAAAAAAT-----GAAACCAAAGAAAAA
AGAAAAAAGAAAAAGGAAAATAAAACAAGAAAACCTGAGAAGTGCAAAAAAGAAAAGAAAACGCAGAAAACATGAAAAAA
GGTGAGAAAACCGAGAAGAAGAAAAAGCTGAAGAAAAAAACACCGGTAAAAACCTGGAATAAAACGAAGAAAAACAGTAA
AAAATA------------GAAGAAACAAAAAGAAAAGGACACCGATAAGTGCCACACGTGTGGGCGTTAGGGGTTTGCCC
ACACATTTTGTGTGGTGTATAAGAGGAACAGCCCACACACCTACGTGTGGGCAAAACAAGTAATGACCAACACCTCTTTT
TTTTCCTCCCGATCCCTCTCACACGCGTACATGTGGGCGAAATAGATAACGCCCACACGCCCCGTACGTCAGGCCTCGTA
CCTGGTGGCCCCGCACGCCCCGCGTACAGTCACCGCGCGTCCCGCAGTTGCCATGGTCCAGACCCTCGTCCATGTTCGTT
TAACTGCAGTTGCCATGTCGCTGAACTTCGGTTGCCATGTCGGACAACTACAGTTGCCATGGTTGCTCAACTGCAGTTGC
CATGTATGGTCTGGTCTACTGCAGTTGCCATAATTTCAAAACTTTAGGAGTTGCCACCCACTAACACTAGGCAGTTGCCA
TGTAACACTAAAAAAGGCATGGCAAAAAAACATGTTCGGGTAAAAGAGAGAGTTGCCATGTGCTCACAAGCACACTAGGG
CAGTTGCCATGTAAAATGAAAGAGTTGCCATATGCTTACATGCACGCTAGGTCAGTTGTCATGTACCATGCAAAAACACA
TGGCAACTCGGGTAAAAGAGAGTTGCCATCTGCTTACATGCACGCTAGGTCAGTTGTCATGTACCATGCAAAAACACATG
GCAACTCGGGTAAAAGAGAGTTGCCATCTGCTTACAAGCAAAGCTAGGGCAGTTGCCATGTACCCTGCAAAAACACATGG
CAACTGCCAGCTTTGGGTGTGGGCGAGGAGACGGGCGTGTGGGCAAAATGATAAACGCCCACACACCAGCCCCCTCTGCG
TGCGTGAAACTGGTGTGTGGGCGAATTGCTAAACGCCCACACACCAGCCCCCCGTATGGTGAAAAAGAACGTGTGGGCGA
CCAGATGAATGCCCACACACCAGCTTAGTCCTACGTGGCACACAAAAACTGCTAGAACGCACCAAGATTCGTGCAGAATT
GGTTGGACGAAGATCCATGCGTGTGGGCGAGTTGCCAGACGCCCACACGTGTGGGTGTTAGACTTTTCGAAAGAAAATAG
AAAGAAAAAAACAGAGAAGAAAAGCGCTAGCAGCAAACGAGCGAAAGCCTCGATCGCTAAGAACGGGCCGGCCCAATACT
GTAGGCGGGACAGAAGGTACTCCTGCTATAAGCGAGATAT---------AGGGCTCGCCTTGCTCGATTCCAGTGATGCG
CATCTGACGGATCGGGATACGTTCGTATCTCTTGCAATCTGGCAACTGTTCGCCATTTAATTTTTCCTCTCCCCACTTCC
CCCAAAAAAATCTAAATATCTGTGCGTTAATTTTGCTACAAAAAATCTTGTACCCTAATTGAAAATGAAAATCGTTCTCA
AAAAAAATTTGAAAACGAAAATCTGAAACTAGCGAAATTCACATTGCACGATGATCACATCCCCCATGGCCATCTTCCTA
AGTAACTTCAGGCATGGAAAGCAAGCATGAAGTTCGCACCCCCGATGTCAACACCTTACAACGCACTCCAATTCCACTCT
CCCTCCTTCCAAAAGGTCTCATAAACTGCTGTATTTCCGCCCGTGTTCCTTCTCCCTTGTTTCCATCTTCCTTTGTATGC
AGCCTTCATGCATGCATGACTGACTGTCTAGCTAGCCCGAGCAGTAGAGCTAGTGCATGACGTGATGGCTCCAACCTCCC
TGCAGAGGCCGAGGAAGCCGAGGTGCCCCTCCCACGCCATGCTCTCGCTCTCCCCTGCCCTCCTCTCCCTCCTCCTCCTC
GTCCCCTTCCTCTACCTCCTCATCCACCGTTCCGCGTGCTCCCCGCCCTTCAGCAACCTCACGACCGCCAGGCGCTCATC
CTCGAGCGTCAGCGGCTTCGCCGGAGACCTTCGCGACATCGAGTTCTCGTGGAACCACCTGCCCTTCATGTCGTCGAAGC
CGCCCTCCGCCAAGCTCAAGATCGCCGTGTTCTCGCGGAAGTGGCCCGTGGCCACGGCCCCCGGCGGCATGGAGCGGCAC
GCGCACACGCTGCACACGGCGCTCGCCGCGCGGGGCCACCGCGTCCACGTGTTCACCTCGCCTCCGCCGCATACCGAGGC
CGCGCCCTCGCCCTCCGCCGATGGGCCTCAGCTGCATTTCCTTGACGGCACCCCCGGCCAGTGGCGGTGCGACGAGGCGT
GGAAGCTGTACGAGGCCGAGGGCGACAACGATCCATTCGACGTCATCCACTCCGAGAGCGTGGCGGTGTTCCACCGGTAC
GCGCGCGGCGTGCCCAACCTGGTCGTGTCGTGGCACGGAATCTCCCTGGAGGCGCTGCACTCGGGTATCTACCAGGACCT
CGCCCGCGGCGAGGATGAGCCCATGTCGCCGGCGTTCAACCAGAGCCTGTCGCAGTCGGTGCACCGGGTGCTGTCCGAGG
TGCGCTTCTTCCGGAGCTACGCGCACCAGGTGGCCATCAGCGACTCCACCGGGGAGATGCTCCGCGACGTGTACCAGATC
CCCGGCCGCCGCGTGCACGTAATCCTGAACGGCGTGGACGAGGCGCAGTTCACTCCGGACACGGAGCTCGGCCGCGCCTT
CAGGGAAGAGATCGGGCTCCCCAAGAGCGCCGACCTCGTGCTCGGCGTGTCCGGGAGGCTCGTCAAGGACAAGGGCCACC
CACTGCTCTACGAGGCCTTCTCCAAGCTCGCCCTCCGCCACCCGAATGTGTACCTCCTCGTTGCCGGCAAGGGGCCGTGG
GAGTCGAGGTACATGGACCTGGGACGCAACGCCAAGGTGCTTGGCGCGGTGCCGCCCGGGAAGCTCAGGGCGTTCTACAA
CGCGCTGGACGTGTTCGTGGACCCGACGCTGCGGCCGCAGGGCCTGGACCTGACGCTCATGGAGGCGATGCAATGCGGCA
AGCCGGTGGTGGCCACGCGGTTCCCGAGCATCAAGGGAAGCATCGTGGTGGACGAGGAGTTCGGCCACATGTTCGCGCCC
AACGTGGAGTCGCTGCTGGAGAGTCTGGAGGCTGTGGTGCAGGATGGCGCCCGGCGCGCCGCGGAGCGCGGCCGGGCGTG
CAGGGAGTACGCCAGGTCCATGTTCGCGGCCACCAAGATGGCACTAGCGTACGAGAGGCTCTTCCTTTGTGTCAAGAACG
AGACCTTCTGTGCGTACCCTTCTGAGTTTGATTAGTTTTCTCAGCAGCATGTGCACTTGCTTAGTGATTTATGGCACACT
AATAATCATAAATACAGTATGTTAT---TT-----TTTCTTTTTCTCTCTCCTGCTTCCCACATGAACTGCCAGCTATGG
ATATTAATCGGGTCTAAATTGTTTTAGGGAATGAGCGACACCTTATTCATAGCATAACAACTTTAGGTTGCTTGTAATGG
GTAGTATCATAGATAAC-----------TAATACTACATTCCTAATGCATAGTATCATATATC-----------------
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>chr3B_712
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------------------------------------------------------ATAA----------------------
--------TTGAAAATGAAAATCTGAAACTAGGGGA---CACATTGCACGATGATCACATCCCCCATGGC-ATCTTCCTA
AGTAACTTCAGGCATGGAAAGCAAGCATGAAGTTCGCACCCCCGATGTCAACACCTTACAACGCACTCCAATTCCACTCT
CGCTCCTTCCAAAAGGTCTCATAAACTGCTGTATTTCCGCCCTTGTTCCTTCTCCCTTGCTTCCATCTTCCTTTGTATGC
AGCCTTC----ATGCATGACTGACTGTCTAACTAGCTCGAGCAGTAGAGCTAGTGCATGACGTGATGGCTCCAACCTCCC
TGCAGAGGCCGAGGAAGCCGAGGTGCCCCTCCCACCCCATGCTCTCTCTCTCCCCTGCCCTCCTCTCCCTCCTCCT---C
GTCCCCTTCCTCTACCTCCTCATCCACCGTTCCGCGTGCTCCCCGCCCTTCAGCAACCTCACGACCGCCAGGCGCTCATC
CTCGAGCGTGAGCGGCTTCGCCGGAGACCTTCGTGACATCGAGTTCTCGTGGAACCACCTGCCGTTCATGTCGTCGAAGC
CACCCCCCGCCAAGCTCAAGATCGCCGTGTTCTCGCGGAAGTGGCCCGTGGCCACGGCCCCTGGCGGCATGGAGCGGCAC
GCGCACACGCTGCACACGGCGCTCGCCGCGCGGGGCCACCGCGTCCACGTGTTCACCTCACCTCCGCCGCATACCGAGGC
CGCGCCCTCGCCCACCGCCGATGGGCCTCAGCTGCATTTCCTTGACGGCACCCCCGGCCAGTGGCGGTGCGACGAGGCAT
GGAAGCTGTACGAGGCCGAGGGCGACAACGATCCGTTCGACGTCATCCACTCCGAGAGCGTGGCGGTGTTCCACCGGTAC
GCGCGCGGCGTGCCCAACCTGGTCGTGTCGTGGCACGGAATCTCCCTGGAGGCGCTGCACTCGGGCATCTACCAGGACCT
CGCCCGCGGCGAGGACGAGCCCATGTCGCCGGCGTTCAACCAGAGCCTGTCGCAGTCGGTGCACCGGGTGCTGTCCGAGG
TGCGCTTCTTCCGGAGCTACGCGCACCAGGTGGCCATCAGCGACTCCACCGGGGAGATGCTCCGCGACGTGTACCAGATC
CCCGGCCGCCGCGTGCACGTAATCCTGAACGGCGTGGACGAGGCGCAGTTCACTCCGGACACGGAGCTCGGCCGCGCCTT
CCGGGAAGAGATCGGGCTCCCCAAGAGCGCCGACCTCGTGCTCGGCGTGTCCGGGAGGCTCGTCAAGGACAAGGGCCACC
CTCTGCTCTACGAGGCCTTCTCCAAGCTCGCCCTCCGCCACCCGAACGTGTACCTCCTGGTCGCCGGCAAGGGGCCGTGG
GAGTCGAGGTACATGGACCTGGGACGCAACGCCAAGGTGCTTGGCGCGGTGCCGCCCGGGAAGCTCAGGGCGTTCTACAA
CGCGCTGGACGTGTTCGTGGACCCGACGCTGCGGCCGCAGGGCCTGGACCTGACGCTCATGGAGGCGATGCAATGCGGCA
AGCCGGTGGTGGCCACGCGGTTCCCGAGCATCAAGGGAAGCATCGTGGTGGACGAGGAGTTCGGCCACATGTTCGCGCCC
AACGTGGAGTCGCTGCTAGAGAGTCTGGAGGCGGTGGTGCAGGATGGCGCCCGGCGCGCCGCGGAGCGCGGCCGCGCGTG
CAGGGAGTACGCCAGGTCCATGTTCGCGGCCACCAAGATGGCACTAGCGTACGAGAGGCTCTTCCTTTGTGTCAAAAACG
AGACCTTCTGCATGTACCCCTCTGAATTTGATTAGTTTTCTCGGGAGCCTGTGCACTTGCTTAGTGATTTATGGCACACT
AATAATCATAAATACAGTATGTACGTTCTT-----TTTATTTTTCTATCTCCTGCTTCCCACATGAACTGCCAGCTATGG
ATATTAATCGGGTCTAAAAAATTTTAGAGAATGTGTGACACGTTATTCAGAGCATAACAACTTTAT--------------
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>chr6A_2752
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-----------------------------------------------------------TATCTCTACTTCTAATGGAGC
AGTTGGTGAATAGTTTCCACGGTTTATTTTCGCTGGGTT-TTTTCGCTGGGTTTTTTCGTCTCTCCTCCCACCCTGGTCC
ATCGGTTTATTTTTCTCTCCACTCTTTATTACAACCAAAACTTTCCTAACGTATAACAAATCATGGATCTAACTTTCTTA
AATTATGCAAATCAATCGATTCCTTTTATTGATTCAATTTGTCTTAGGAAACAAATAACAGATTTTCAGGAAACAAATAA
TATATTTTAATCTAACTTTCCTAACTTATCTAAATCAATCGATTTATCTCATTAGTGAAATTTGTTTTAGGAAACAAATA
A---------------------------------------------------------------CAGACACGTCACAAAC
GGGCAGGTACTGATATCACGTTACCAAACAATAAAACCCCATTTGCATAGAAATCAGTTC-AAAA-TCCTAACTTTCCTA
AATTTTTACCTTTCCTTGATAACAACCAATATTTCCTATGTTCTCCACCTATAGAAGGAAATCCCCCCTCCATCGATATT
AGCA---TTTTTT--GGAATGAGATCTCCAGGTTATGA--TTTTTTTGCGATTCTTTTCAATTGTGACCTCTCCTTCCGC
TTCAGCTCCTTCTCGCATAAACACCTCCACCACAGCCACCTGACGCCACCCCAGACCTCCTGCCTCTCCACACCTTCTCC
GCCACCTCCTCCTCATACTCCATTGACAATCCCTCCGCCATGTTTGTCCATGGTGGTTTCAAAGGACATG
>chr7D_2753
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------------------------------------------------------------ATCTCTACTCCTAATGAACG
AGTTGGTAAATAGTCTCCGTGGTTTATTTTCGCTGGGTT-TTTTTGTCTCTCCTCCCACCACCCCCTCCCACCCTGGTCC
ATCGGTTTATTTTTCTCTCCACTCTTTATTACAACCATAACTTTTGTAACGTATAACAAATCACGAATCTAACTTCCTTA
AATTATGCAAATTAATCGATTCCTTTTATTGGTTCAATTTGTCTTAGGAAACAAATAACAGATTTTCAGGAAACAAATAA
TACATTTTAATCTAACTTTCCTAACTTATCTAAATCAATCGATTTCTCTTATTAGTGAAATTTGTTTTAGGAAACAAATA
ACAGACACGTCACAAC--TTTCCTCCCAATAAATAGTTTCTTAACATTTGTAAACTTTCCTAATCAGACACGTCACAAAC
GGGCAGGTACTGATATCACGTTACCAAACAATAAAACCCCATTTGCATAGAAATCAGTTC-AAAAATCCTAACTTTCCTA
AATTTTTACCTTTCCTTGACAACAACCAATATTTCCTATGTTTTCCACCTATTGAAGGAAATCACCCCTCCATCGATATT
AGCA---TTTTTTTTGGAATGAGATCTCTGGGTTATGAT-TTTTTTTGCGATTCTTTCCAATTGTGACCTCTCCTTCCAC
TCCGGCTCCTTCTCGCATAAACACCTCCACCACAGCCAGGTGACACCACCTCAGACCTCCTGCCTCTTCACACCTTCTCC
GCCACCTCCTTCTCGTACTCCATTGACAATCCCTCCGCCACATTTGTCCACGGCGGTGTCGAGGGCATG-
>chr2D_2753
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------------------------------------------------------------ATCTCTACTCCTAATGGATG
AGTTGGTGAATAGTCTCCGCGGTTTATTTTCGCTGGTTT-TTTTCGTCTCTCCTCCCACCACCCCCTCCCACCCTGGTCC
ATCGGTTTATTTTTCTCTCCACTCTTTATTACAACCAGAACTTTCCTAACGTATAACAAATCACAGATCTAACTTCCTTA
AATTATGCAAATCAATTGACTCCTTTTATTGGTTCAATTTGTCTTAGGAAACAAATAACAGATTTTCAGGAAACAAATAA
TACATTTTAATCTAACTTTCCTAACTTATCTAAATCAATCGATTTCTCTTATTAGTGAAATTTGTTTTAGGAAACAAATA
ATAGATACGTCACAACTTTTTCCTCCCAATAAATAGTTTCTTAACATTTGCAAACTTTCCTAATCAGACACGTCACAAAC
GGGCAGGTACTGATATCACGTTACCAAACAATAAAACCCCATTTGCATAGAAATCAGTTC-AAAAATCCTAACTTTCCTA
AATTTTTACCTTTCCTTGATAACAACCACTATTTCCTATATTTTCCACCTATTGAAGGAAATCATCCCTCCATCGATATT
AGCA---TTTTTT--GGAATGAGATCTCCGGGTTATGAT-TTTTTTTGCGATTCTTTCGAATTGTGACCTCTCCTTCCAC
TCCGGCTCCTTCTCGCATAAACACCTCCACCACAGCCAGGTGACACCACCCCAGACCTCCTGCCTCTCCACACCTTCTCC
GCCACCTCCTTCTCGTACTCCATTAACAATCCCTCCGCCACATTTGTCCACGGCAGTGTCGAGGGCATG-
>chr7D_2754
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-------------------------------------------------------------TCTCTACTCCTAATGGACG
AGTTGGTGAATAGTCTCCGCGGTTTATTTTCGCTGGTTTTTTTTCGTCTCTCCTCCCACCACCCCCTCCCACCCTGGTCC
ATCGGTTTATTTTTCTCTCCACTCTTTATTACAACCAGAACTTTCCTAACGTATAACAAATCACGGATCTAACTTTCTTA
AATTATGCAAATCAATCGATTCCTTTTATTGGTGCAATTTGTCTTAGGAAATAAATAACAGATTTTCAGGAAACAAATAA
TACATTTTAATCTAACTTTCCTAACTTATCTAAATCAATCGATTTCTCTTATTAGTGAATTTTGTTTTAGGAAACAAATA
ACAGACACGTCACAACTTT--CCTCCCAATAAATAGTTTCTTAACATTTGCAAACTTTCCTAATCAGACACGTCACAAAC
GGGCAGGTACTGATATCACGTTACCAAACAATAAAACCCCATTTGCATAGAAATCAGTTC-AAAAATCCTAACTTTCCTA
AATTTTTACCTTTCCTTGATAACAACCAATATTTCCTATGTTTTCCACCTATTGAAGGAAATCACCCCTCCATCGATATT
AGCA---TTTTTTTGAAC-TGAGATCTCCGGGTTATGA--TTTTTTTGCGATTCTTTCCAATTGTGACCTCTCCTTCCAC
TCTGGCTCCTTCTCGCATAAACACCTCCACCACAGCCAGGTGACACCGCCCCAGACCTCCTGCCTCTCCACACCTTCTCC
GCCACCTCCTTCTCGTACTCCATTAACAATCCCTCCACCACATTTGTCCACGGCGGTGTCGAGGGCATG-
>chr5D_2791
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------------------GCGGTTTATTTTCGCTGGGTTTTTTCCGTCTCTCCTCCCACCATCCCCTCCCACCCTGGTCC
ATCGGTTTATTTTTCTCTCCACTCTTTATTACAACCAGAACTTTCCTAACGTATAACAAATCACGGATCTAACTTCCTTA
AATTATGCAAATCAATCGATTCCTTTTATTGGTTCAATTTGTCTTAGGAAACAAATAACAGATTTTCAGGAAACAAATAA
TATATTTTAATCTAACTTTCCAAACTTATCTAAATCAATCGATTTCTCTTATTAGTGAAATTTGTTTTAGG---------
---------------------------------------------------AAACTTTCCTAATCAGACACGTCACAAAC
GGGCACATACTGATATCACGTTACCAAACAATAAAACCCCATTTGCATAGAAATCAGTTC-AAAAATCCTAACTTTCCTA
AATTTTTACCTTTCCTTGATAACAATCAATATTTCCTATGTTTTCCACCTATTGAAGGAAATCACCCCTCCATTGATATT
AGCA---TTTTTTTGAAC-TGAGATCTCCGGGTTATGA--TTTTTTTGCGATTCTTTCCAATTGTGACCTCTCCTTCCAC
TCCGGCTCCTTCTCGCATAAACACCTTCACCACAGCCAGGTGACACCGCCCCAGACCTCCTGCCTCTCCACACCTTCTCC
GCCACCTCCTTCTCGTACTCCATTAACAATCCCTCCGCCACATTTGTCCACGGCGGTGTCGAGCGCATG-
>SNPs
-----S----S---------------S----------------------------------------SSSSS-SSSSS--
--------------S----------------------------------------S----------------------S-
-------------SSS----------S-----S---------S---S-S--S-------SSSSSS--------S------
-S------SS--------------------------------------------------------------S------S
S----------S--------SS----SSSSS-SS-------S--S-----------------------------S--SS-
----SSSSSSSSSSSSSS-------------S------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------S--------------S---------SS---------------------------S------
----------------------SS------S---------SSSSSSSSS--S--------S----------------S--
----S------------------S---S-----------------------------------------------S--S-
---S---------------S------------------S--------S---S----------------------------
----------------S---------------------------------------------------------------
------------------------------------------S------------------------S---S--------
-----------S--SS----------------------------------------------------------------
---------------------------------------------------------------------S-----S----
-------------------------------------------------------------------------------S
-------------------------------------------------------S------------------S-----
--------------------------------------------------------------------------------
------S-------------------------------------------------------------------------
-----------------------------------------------------------------S--------------
------------------------S-------------------------------------------------------
----------------S---------------------------------------------------------------
-----------------------S--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------S-----------------------------------------------
------------------------------------------------S-------------------------------
-S------------------------------------------------------------------------------
--------------------------------------------------------S-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------S--------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------S------------------------------------
------------------------------SSSSS---------------------------------------------
---S---S-----------------------------------------------------------S------------
S-S----S---SS--SSSSSSSSSSSSS-----S--S------------------S--------------S---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------SS-S-------------------------------SSS---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----S-------------S----------------------------------------S-------------------
---------------------------------------S---------------------------S------S-S---
----SSS-------------------------------SS--------S--S----------------------------
------------------------------S------------------------------S------------------
-------------------S-----S--------------------------------------------
>forward_2012
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------TCCACTCT
CCCTCCTTCCAC--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------
>reverse_3458
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------CGAGAGTCTGGAGGCGGT---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
>forward_2150
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------TAGTGCATGACGTGATGGCA----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
>reverse_3715
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------TTTTCTTTTTCTCTCTCCTGCTTCC---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
