CLUSTAL X (1.81) multiple sequence alignment input_sequence_50031 -------------------------------------------------- chr2B_1_TraesCS2B01G013100 CTGGTAGGTGGAATATTTACAAGATACTAGTAAGCGGGACATCAAGATTG chr2D_826 GATCCGCGGGTT-------------------------------------- chr4B_1077 -------------------------------------------------- chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs SSSSSSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 -------------------------------------------------- chr2B_1_TraesCS2B01G013100 GGGTGAATGGCGCCAGCAGCGGCCATCACACCAGATTGTTCCATGGCTTT chr2D_826 -------------------------------------------------- chr4B_1077 -------------------------------------------------- chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 -------------------------------------------------- chr2B_1_TraesCS2B01G013100 CTGGATGTGGTGGGCAAGAGATAAGGCTGATTGTGAGAGATAGGGAGTTG chr2D_826 -------------------------------------------------- chr4B_1077 -------------------------------------------------- chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 -------------------------------------------------- chr2B_1_TraesCS2B01G013100 TTTGTAAATACGGAAACAAGTGTGGACATCTTTTTACAAAACTGCAGTAG chr2D_826 -------------------------------------------------- chr4B_1077 -------------------------------------------------- chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 -------------------------------------------------- chr2B_1_TraesCS2B01G013100 TTTGCTTTGTATGCGTCAGATCTAGATCCGACGGCTATTGGTGAAAGATG chr2D_826 -------------------------------------------------- chr4B_1077 -------------------------------------------------- chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 -------------------------------------------------- chr2B_1_TraesCS2B01G013100 GCATGCACATCATCATCACCAACTCAGGTTTTATAAGAGTAGAGATTTTA chr2D_826 -------------------------------------------------- chr4B_1077 -------------------------------------------------- chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 -------------------------------------------------- chr2B_1_TraesCS2B01G013100 GGTGGACCGCCTGCCTGATCTGACAACGTGAGCTTTCTCCTCTATTTCTT chr2D_826 -------------------------------------------------- chr4B_1077 -------------------------------------------------- chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 -------------------------------------------------- chr2B_1_TraesCS2B01G013100 TTCTCCATCTCAGAGATGTGTCCGTATGAATTTTACTTATTTCACTATGT chr2D_826 -------------------------------------------------- chr4B_1077 -------------------------------------------------- chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 -------------------------------------------------- chr2B_1_TraesCS2B01G013100 TGGGGTCACTGGGAAGATATGTGGTGATACCAAGCCTTACATGCTACCAT chr2D_826 -------------------------------------------------- chr4B_1077 -------------------------------------------------- chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 -------------------------------------------------- chr2B_1_TraesCS2B01G013100 GATCCGGGAGCTTTTGATCATTTTACAAAAAAAACATTCAAAAGTTTCAA chr2D_826 -------------------------------------------------- chr4B_1077 -------------------------------------------------- chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 -------------------------------------------------- chr2B_1_TraesCS2B01G013100 AATTACGCATAGGTATAATAGCTCTTTACATGCCGTCAGATCTGAAATCC chr2D_826 -------------------------------------------------- chr4B_1077 -------------------------------------------------- chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 -------------------------------------------------- chr2B_1_TraesCS2B01G013100 AACGACCGAGAAAGATGTATCACGATAGCACCTAAAATTTGTATCACCTG chr2D_826 -------------------------------------------------- chr4B_1077 -------------------------------------------------- chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 -------------------------------------------------- chr2B_1_TraesCS2B01G013100 CAATTTTGAAATTTTGAATGACTTTTTTGTAAAATGTTTAAGAACTCCCG chr2D_826 -------------------------------------------------- chr4B_1077 -------------------------------------------------- chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 -------------------------------------------------- chr2B_1_TraesCS2B01G013100 AGAGCTGTCGGATCCCAGAACCCCCTATCATGGTAGCACGTAAGCCTTGG chr2D_826 -------------------------------------------------- chr4B_1077 -------------------------------------------------- chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_701 -------------------------------GGTAGCACGTAAGCCTTGG reverse_2600 -------------------------------------------------- input_sequence_50031 -------------------------------------------------- chr2B_1_TraesCS2B01G013100 TATCACCAGATATCTTCCCTAGAGTCACTTGCTATGATTTTCAATAAGTT chr2D_826 -------------------------------------------------- chr4B_1077 -------------------------------------------------- chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_701 T------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 -------------------------------------------------- chr2B_1_TraesCS2B01G013100 ATCTTCTCGTATGCATCCATACTACTCACCTGAAGTTAAGCATTTACCTG chr2D_826 -------------------------------------------------- chr4B_1077 -------------------------------------------------- chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 -------------------------------------------------- chr2B_1_TraesCS2B01G013100 ATTGTTCATTTGGTTTAACTATGCGGATCGACGGGCAGATGCGGTGTTTG chr2D_826 -------------------------------------GATGCGGTGTTTG chr4B_1077 -------------------------------------------------- chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------- forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 -------------------------------------------------- chr2B_1_TraesCS2B01G013100 GTTTACGGGTGCGTGCGTTGGAGATGCCCTTAGTCGTCTCTCTTTCCCTC chr2D_826 GTTTACGGGTGCGTGCGATGGAGATGCCCTTAGTCGTCTCTCTTTCTCTT chr4B_1077 -------------------------------------------------- chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs -----------------S----------------------------S--S forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 -------------------------------------------------- chr2B_1_TraesCS2B01G013100 TTAAAAA-AAGTCGCGTCTCAAGCAATGGATATAAATCCATCTCCTCAAC chr2D_826 TTAAAAGTAAGTCGCCTCTCCAAAAATGGATATAAATCCATCTCCTCTAC chr4B_1077 -------------------------------------------------- chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs ------S--------S----S-SS-----------------------S-- forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 -------------------------------------------------- chr2B_1_TraesCS2B01G013100 AGCAGTGTTGCTCAGCTC------------ATCACTCGATTCTTCCGCAT chr2D_826 AGCAGCGTTGCTCAGCTCACCTGTCCTATTATCACTCAATTCTTCCGCAT chr4B_1077 -------------------------------------------------- chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs -----S-------------------------------S------------ forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 -------------ATGCCTACACGTACGTCTTCAATGGCGCCGTCGACGG chr2B_1_TraesCS2B01G013100 CCGTTAGAGCTGCATGCCTACACGTACGTCTTCAATGGCGCCGTCGACGG chr2D_826 CCGTTAGAGCTGCCTGCACGTACGTACGTCTACAATGGCGCCGTCGACGG chr4B_1077 -------------------------------------------------- chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs -------------S---SSSS----------S------------------ forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 AGACGAACGAGTTCAACGTTGCTACGTCAGCGCTCCCGACACACTTCGTT chr2B_1_TraesCS2B01G013100 AGACGAACGAGTTCAACGTTGCTACGTCAGCGCTCCCGACACACTTCGTT chr2D_826 AGACGAAGGATTTCAACGTTGCTACGTCAGTGCTTCCGACACACTTCATT chr4B_1077 ---------------------------------------CACACTTTGTT chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs -------S--S-------------------S---S--------------- forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 CTCGTCCCCCTCGTGGCGCAGGGCCACACCATCCCGATGGTGGACCTTGC chr2B_1_TraesCS2B01G013100 CTCGTCCCCCTCGTGGCGCAGGGCCACACCATCCCGATGGTGGACCTTGC chr2D_826 CTCGTCCCCCTCGTGGCGCAGGGCCACACCATCCCGATGGTGGACCTTGC chr4B_1077 CTCGTCCCGCTCATGGGGCAGGGCCACACCACCCCCATGGCCGACCTTGC chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs -------------------------------------------------- forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 ACGCCTCCTCGCAGGACGCGGTGCGCGCGTGAGCGTGGTGACCACGCCCT chr2B_1_TraesCS2B01G013100 ACGCCTCCTCGCAGGACGCGGTGCGCGCGTGAGCGTGGTGACCACGCCCT chr2D_826 ACGCCTCCTCGCAGGACGCGGTGCGCGCGTGAGCGTGGTGACCACACCCT chr4B_1077 ATGCCTCATTGCAGGACGCGGCGTGCGAGTGAGCCTCGTCACCACGCCCG chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs -------------------------------------------------- forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 GGAACGCCGCGCGCCTCCAGGGCGTCGCCGACTCTGCGCGGCGCGCCAAG chr2B_1_TraesCS2B01G013100 GGAACGCCGCGCGCCTCCAGGGCGTCGCCGACTCTGCGCGGCGCGCCAAG chr2D_826 GGAACGCCGCGCGCCTCCAGGGCATCGCCGACTCTGCACGGCGCGCCAAG chr4B_1077 TCAACGCCGCGCGCCTGCGGGGACTAGCCGACAGGGCGCGGGGCGCCATG chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs -----------------------S-------------------------- forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 CTGCCCCTAGACATAGTCGAGCTCCCGTTCGCGCCGGCCGACGACGGACT chr2B_1_TraesCS2B01G013100 CTGCCCCTAGACATAGTCGAGCTCCCGTTCGCGCCGGCCGACGACGGACT chr2D_826 CTGCCCCTAGACATAGTCGAGCTCCCGTTCGCGCCGGCCGACGACGGGCT chr4B_1077 TTGCCGCTGGAAATTGTCGAGCTCCCATTCCCGCAGGCCGACGACGGGCT chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs -----------------------------------------------S-- forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 GCCCCCCGGCTGTGGCGACGACATCGACACCTTAGCCCCCATGTTCCAGG chr2B_1_TraesCS2B01G013100 GCCCCCCGGCTGTGGCGACGACATCGACACCTTAGCCCCCATGTTCCAGG chr2D_826 GCCCCCAGGCTGTGGCGACGACATCGACACGTTAGTCCCCATGTTCCAGG chr4B_1077 GCCCCGGGGCAGCAACGACAATAGCGACAATGTCCTCCAATTGTTCCTGT chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs ------S-----------------------S----S-------------- forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 CCCTCCACAGGCTCGCCGGCCCCTTGGAGGCCTACCTGCGCGCGCTGGGG chr2B_1_TraesCS2B01G013100 CCCTCCACAGGCTCGCCGGCCCCTTGGAGGCCTACCTGCGCGCGCTGGGG chr2D_826 CCCTCCACAGGCTCGCCGGCCCCTTCGAGGCCTACTTACGCGCGCTGGGG chr4B_1077 CCCTCTATAGGCTCGCCGGGCCACTCGAGGCCTACGTGCGCTCGCTTCCC chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs -------------------------S---------S-------------- forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 CGGCGGCCCGGCTGCATCATCTACGACAGGGCTAACGCATGGACTGCCGG chr2B_1_TraesCS2B01G013100 CGGCGGCCCGGCTGCATCATCTACGACAGGGCTAACGCATGGACTGCCGG chr2D_826 CGGCGGCCGAGCTGCATCATCTACGACAGGGCTAACGCGTGGACTGCCGG chr4B_1077 TGGCGCCCCAGCTGCATCATCTCCGACTCCTGCAACCCGTGGACGGTCGG chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs ---------S----------------------------S----------- forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 CGTGGCCAGGAGCGTTGGGGTGCCGCTGCTCTTCTTCCACGGCCCTTCCT chr2B_1_TraesCS2B01G013100 CGTGGCCAGGAGCGTTGGGGTGCCGCTGCTCTTCTTCCACGGCCCTTCCT chr2D_826 CGTGGCCAGGAGCGTCGGGGTGCCGCTGCTCTTCTTCCACGGCCCTTCCT chr4B_1077 CGTCGCCAGGAGCGTCGGGATCCCTCGGCTCACCTTCACCGGCCCTTCCT chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs ---------------S---------------------------------- forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 GCTTCTACTCGCTCTGCGACCTCAACGTCGCCACGCACGGACTTGTTGAG chr2B_1_TraesCS2B01G013100 GCTTCTACTCGCTCTGCGACCTCAACGTCGCCACGCACGGACTTGTTGAG chr2D_826 GCTTCTACTCGCTCTGCGAGCTCACCGTCGCCACGCACGGACTTGTTGAG chr4B_1077 GCTTCTACTCGCTCTGCGACTTCAACGTCGCCAAGCACGGGCTTCTTCAC chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs -------------------------------------------------- forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 GAGCGCGAGACGTGCGTCATGCCAGGCATGCCGGTGCGCCTGGAGATGAC chr2B_1_TraesCS2B01G013100 GAGCGCGAGACGTGCGTCATGCCAGGCATGCCGGTGCGCCTGGAGATGAC chr2D_826 GAGCGCGAGATGTGCGTCATGCCAGGCCTGCCGGTGCGCGTGGAGATGAC chr4B_1077 AACGGCGT------CGTCGTGCCAGGCATGCCGGTGCGAGTGGAGTTGAG chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs ----------S----------------------------S---------- forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 CAGGGCTACCTGCTCCTCCGCTTTCTTGAAGACT---CCTGCGTGGGAGG chr2B_1_TraesCS2B01G013100 CAGGGCTACCTGCTCCTCCGCTTTCTTGAAGACT---CCTGCGTGGGAGG chr2D_826 CAGGGCTACGTGCTCCTCCGCCTTCTTGAACACA---CCTGCGTGGGAGG chr4B_1077 CAAGGACACATGGGCCGCCGCCTTCCTAACTTGCATGCCTGCCTGGGGGA chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs ---------S-----------S--------S--S---------------- forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 CGTTCCAGAAGAACGCCATGGAGGCCATGCGCATGGCCGACGGCGCCGTC chr2B_1_TraesCS2B01G013100 CGTTCCAGAAGAACGCCATGGAGGCCATGCGCATGGCCGACGGCGCCGTC chr2D_826 CGTTCCAGAAGAACGCCATGGAGGCTATTCGCATGGCCGACGGCGCCGTC chr4B_1077 AGTTCGTGGAGGAGGTGAGGGAGGGCATCCGCATGGCCGACGGCGCCGTG chr6A_1647 ------------ACGCCGTCGCGGCCATGCGTACGTCCCACGGTGTGGTG chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs -------------------------------------------------- forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 GCCAACACGTTCCTGGACCTCGAGGGACAGTTCGTGTCGTGCTACGAGGC chr2B_1_TraesCS2B01G013100 GCCAACACGTTCCTGGACCTCGAGGGACAGTTCGTGTCGTGCTACGAGGC chr2D_826 GCCAATACGTTCCTGGACCTCGAGGGGCAGTTCGTGTCGTGCTACGAGGC chr4B_1077 GTGAACACGTTCCTGGGCCTCGAGGAACAGTTCGTCGCATGCTACGAGGC chr6A_1647 ATCAACACCTTCCTGGACCTCGAGGAGAAGTCCGTGGCATGCTACGAGGC chr6D_1687 --CAACACCTTCCTGGACCTCGAAGAAAAGTCCGTGGCGTGCTACGAGGC chr6B_1687 --CAACACCTTCCTGGACCTCGAAGAAAAGTCCGTGGCGTGCTACGAGGC SNPs -------------------------------------------------- forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 GGCGCTGGGGATGCCGGTGTGGGCGCTCGGGCCGTTCTGCCTCAGCAACC chr2B_1_TraesCS2B01G013100 GGCGCTGGGGATGCCGGTGTGGGCGCTCGGGCCGTTCTGCCTCAGCAACC chr2D_826 GGCGCTGGGGATGCCGGTGTGGGCGCTCGGGCCGTTGTGCCTCAGCACCC chr4B_1077 AGCGCTGGGCAAGCCGGTGTGGGCGCTCGGGCCCTTCTTCCTCAATAGCC chr6A_1647 TGCTCTCGGCAAGCCCGTGTGGACGCTCGGCCCGTTCTGCCTGCACAACC chr6D_1687 TGCTCTCGGCAAGCCCGTGTGGACGCTCGGCCCGTTCTGCCTGCACAACC chr6B_1687 TGCTCTTGGCAAGCCCGTGTGGACGCTCGGCCCGTTCTGCCTTCACACCC SNPs -------------------------------------------------- forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 GCGACGAGACGGCCCTGGCGTGCCGCGGGGACAAGGACAGACCCACCGCC chr2B_1_TraesCS2B01G013100 GCGACGAGACGGCCCTGGCGTGCCGCGGGGACAAGGACAGACCCACCGCC chr2D_826 GCGACGAGGCGGCCCTGGCGTGCCGGGGGGACAAGGACAAACCCACCGCC chr4B_1077 GGGACGAG------------------------------------------ chr6A_1647 GTGACGGCGAGGACAGGACGTCGCGCGGTGGCAACAAG------AGCGGC chr6D_1687 GTGACGGCGAGGACATGGCGTCGCGCGGTGGCAACAAG------AGCGGC chr6B_1687 GTGACGGCGACGACATGGCGTCGCGCGGTGGCAACAAG------AGCGGC SNPs --------S------------------------------S---------- forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 GTCAACCAGAGCGCGGTCACCGAATGGCTCGACGCCATGTGCACCGGCTC chr2B_1_TraesCS2B01G013100 GTCAACCAGAGCGCGGTCACCGAATGGCTCGACGCCATGTGCACCGGCTC chr2D_826 GTGGACCAGAGCGCGGTCACCGAATGGCTCGACGCCATGTGCACCGGCTC chr4B_1077 -------------------------------------------------- chr6A_1647 GTCAGCGAGAGGGCGATCGTCGCGTGGCTGGACAAGCAAGCGCCGGAGTC chr6D_1687 GTCAGCGAGAGGGCGATCGTCGCGTGGCTGGACAAGCAAGCGCCGGAGTC chr6B_1687 GTCAGCGAGAGGGCGATCGTCACGTGGCTGGACAAGCAAGCGCCGGAGTC SNPs -------------------------------------------------- forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 CGTTGTTTTTGCCAGCTTCGGCAGCCTCGTGCGGGTGCTTCACGAGCAGC chr2B_1_TraesCS2B01G013100 CGTTGTTTTTGCCAGCTTCGGCAGCCTCGTGCGGGTGCTTCACGAGCAGC chr2D_826 CGTTGTTTATGCCAGCTTCGGCAGCCTCGTGCGGGTGCTTCACGAGCAGC chr4B_1077 -------------------------------------------------- chr6A_1647 CGTCGTATATGTCAGCTTCGGCAGCGTTGCACGGAAGCTCCCCAAGCAGC chr6D_1687 CGTCGTATATGTCAGCTTCGGCAGCGTCGCACGGAAGCTCCCCAAGCAGC chr6B_1687 CGTCGTATATGTCAGCTTCGGCAGCGTCGCACGGAAGCTCCCCAAGCAGC SNPs --------S----------------------------------------- forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 TGTACGAGGTCGGGCATGGCCTCGAGGACTCGGGCAGGCCGTTCCTTTGG chr2B_1_TraesCS2B01G013100 TGTACGAGGTCGGGCATGGCCTCGAGGACTCGGGCAGGCCGTTCCTTTGG chr2D_826 TGTACGAGGTCGGGCATGGCCTGGAGGACTCGGGCAGGCCGTTCCTTTGG chr4B_1077 -------------------------------------------------- chr6A_1647 AGTTCGAGATCGGCCACGGCCTGGAGCACTGCGGCAGGCCTTTTCTCTGG chr6D_1687 AGTTCGAGATCGGCCACGGCCTGGAGCACAGCGGCAGGCCTTTTCTCTGG chr6B_1687 AGTTCGAGATCGGCCACGGCCTGGAGCACTGCTGCAGGCCTTTTCTCTGG SNPs ----------------------S--------------------------- forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 GTCGTGAAGGAGTCCGAGGTGGCGGCCTCGCCGGAGGTGCTGGAGTGGCT chr2B_1_TraesCS2B01G013100 GTCGTGAAGGAGTCCGAGGTGGCGGCCTCGCCGGAGGTGCTGGAGTGGCT chr2D_826 GTCGTGAAGGAGTCCGAGGTGGCGGCCTCGCCGGAGGTGCTAGAGTGGCT chr4B_1077 -------------------------------------------------- chr6A_1647 GTCGTGAAGGAGTCCGAGCTGGC---CTCGCCGGAGGCTCGTATGTGGCT chr6D_1687 GTCGTGAAGGAGTCCGAGCTGGC---CTCGCCGGAGGCTCGTATGTGGCT chr6B_1687 GTTGTGAAGGAGTCCGAGCTGGC---CTCGCCGGAGGCTCGTATGTGGCT SNPs -----------------------------------------S-------- forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 GCAAGCCCTGGAGGCACGCACCGCGGGTCATGGCCTCGTGGTGCGCGGCT chr2B_1_TraesCS2B01G013100 GCAAGCCCTGGAGGCACGCACCGCGGGTCATGGCCTCGTGGTGCGCGGCT chr2D_826 GCCAGCCCTGGAGGCACGCACGGCGGGCCGTGGCCTCGTGGTGCGCGGCT chr4B_1077 -------------------------------------------------- chr6A_1647 AGAGGCCCTGGAGGCGCGCACGTCCGGGCGGGGTCTTGTGGTGCGCGGCT chr6D_1687 AGAGAGCCTGCAGGCGCGCACGTCGGGGCGGGGTCTCGTGGTGCGCGGCT chr6B_1687 AGAGAGCCTGGAGGCGCGCACGTCCGGGCGGGGTCTCGTGGTGCGCGGCT SNPs ---------------------S-----S-S-------------------- forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 GGGCGCCGCAGCTCGCCATCCTGTCGCACCGCGCCGTGGGGGCCTTCGTG chr2B_1_TraesCS2B01G013100 GGGCGCCGCAGCTCGCCATCCTGTCGCACCGCGCCGTGGGGGCCTTCGTG chr2D_826 GGGCGCCGCAGCTCGCCATCTTGTCGCACCGCGCCGTGGGGGCCTTCGTG chr4B_1077 -------------------------------------------------- chr6A_1647 GGGCACCGCAGCTCGCCGCCCTGTCGCACCGCTCCGTGGGGGGGTTCGTC chr6D_1687 GGGCGCCGCAGCTCGCCGTCCTGTCCCACCGCTCCGTGGGGGGATTCGTC chr6B_1687 GGGCGCCGCAGCTCGTCGTTCTGTCGCACCGCTCCGTGGCGGGGTTCGTC SNPs -------------------------------------------------- forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 ACACACTGCGGCTGGAACTCGCTGCTGGAGTCGATCGCACACGGCGTGCC chr2B_1_TraesCS2B01G013100 ACACACTGCGGCTGGAACTCGCTGCTGGAGTCGATCGCACACGGCGTGCC chr2D_826 ACACACTGCGGCTGGAACTCGCTGCTGGAGTCGGTCGCACACGGCGTGCC chr4B_1077 -------------------------------------------------- chr6A_1647 ACGCACTGTGGCTGGAACTCGGTGCTGGAGTCTATCGCGCACGGCGTGCC chr6D_1687 ACGCACTGCGGCTGGAACTCGGTGCTGGAGTCCATCGCGCACGGCGTGCC chr6B_1687 ACGCACTGTGGATGGAACTCGGTGCTGGAGTCCATCGCGCACGGCGTGCC SNPs -------------------------------------------------- forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 GGTCGTGACGTGGCCGCACTTGGCAGACCAGTTCCTGAACGAGCGTCTGG chr2B_1_TraesCS2B01G013100 GGTCGTGACGTGGCCGCACTTGGCAGACCAGTTCCTGAACGAGCGTCTGG chr2D_826 GGTGGTGACGTGGCCACACTTGGCAGACCAGTTCCTGAACGAGCGGCTGG chr4B_1077 -------------------------------------------------- chr6A_1647 CGTCTTGACGTGGCCGCACTTTGCCGACCAGTTCCTGAACGAGCAGCTGG chr6D_1687 GGTCTTGACGTGGCCGCACTTTGCCGATCAGTTCCTGAACGAGCAGCTGG chr6B_1687 GGTCTTGACGTGGCCGCACTTTGCCGACCAGTTCCTGAACGAGCAGCTGG SNPs ---------------------------------------------S---- forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 CCGTGGACGTGCTCGGGGTGGGCGTGCCCGTCGGCGCAGC---------- chr2B_1_TraesCS2B01G013100 CCGTGGACGTGCTCGGGGTGGGCGTGCCCGTCGGCGCAGC---------- chr2D_826 CCGTGGACGTGCTCGGCGTCGGCGTGCCCGTCGGCGCAGC---------- chr4B_1077 -------------------------------------------------- chr6A_1647 CTGTGGACGTGCTCGGGATCGGCCTCCGGATCGGCGTCACGGCGCCCGTG chr6D_1687 CTGTGGACGTGCTCGGGGTCGGCCTCCGGATCGGCGTCATGGCGCCCGTG chr6B_1687 CTGTGGACGTGCTCGGGGTCGGCCTCCGGATCGGCGTCACGGCGCCCGTG SNPs -------------------S------------------------------ forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 -----TGTGCCTGACGGCGAGGCCGTAATGGTGGCGCGCGGAGACATCGC chr2B_1_TraesCS2B01G013100 -----TGTGCCTGACGGCGAGGCCGTAATGGTGGCGCGCGGAGACATCGC chr2D_826 -----CGTGCCTGACGGCGAGGCCGTGATGGTGGCGCGCGGAGACATCGC chr4B_1077 -------------------------------------------------- chr6A_1647 ATGATCCTGAACGACGACGCGGCCGCGCCGGTGCTGCGTGGCGACATCGC chr6D_1687 ATGATCCTGAACGACGACGCGGCCGCGCCGGTGCTGCGTGGCGACATCGC chr6B_1687 ATGATCCTGAACGACGATGCGGCCGCGCCGGTGCTGCGTGGCGACATCGC SNPs -----S--------------------S----------------------- forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 GCGGGCGGTGTCGGAGCTCATGGGCAGTGGCGACGTGGCCGAGGAGAGGA chr2B_1_TraesCS2B01G013100 GCGGGCGGTGTCGGAGCTCATGGGCAGTGGCGACGTGGCCGAGGAGAGGA chr2D_826 GCGGGCGGTGTCGGAGCTCATGGGCGGTGGCGACGTGGCCGAGGAGAGGA chr4B_1077 -------------------------------------------------- chr6A_1647 GCGCGCGGTGTCAGAGCTCATGCAGGGTGGAGAGGAGGCCGAGGAGAGGA chr6D_1687 ACGCGCGGTGTCAGAGCTCATGCAGGGCGGGGAGGAGGCCGAAGAGAGGA chr6B_1687 GCGCGCTGTGTCAGAGCTCATGCAGGGTGGGGAGGAGGCTGAAGAGAGGA SNPs -------------------------S------------------------ forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 GGAGGAAGGCCAAGGAGTACGGCGAGAGAGCTCGCACGGCCATGGCCATA chr2B_1_TraesCS2B01G013100 GGAGGAAGGCCAAGGAGTACGGCGAGAGAGCTCGCACGGCCATGGCCATA chr2D_826 GGAGGAAGGCCAAGGAGTACGGCGAGAGAGCTCGCACAGCCATGGCCATA chr4B_1077 -------------------------------------------------- chr6A_1647 GGAGGAAGGCCAAGGAGTACGGCGCGAAAGCTCGGAAGGCCATGGAGAAA chr6D_1687 GGAGGAAGGCCAAGGAGTACGGCGCGAAAGCTCGGAAGGCCATGGAGAAA chr6B_1687 GGAGGAAGGCCAAGGAGTACGGCGCGAAAGCTCGGAAGGCCATGGAGAAA SNPs -------------------------------------------------- forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 GGAGGTTCATCGTACCAAAACCTGGCGCGGCTGATACAGAGATTCACGCC chr2B_1_TraesCS2B01G013100 GGAGGTTCATCGTACCAAAACCTGGCGCGGCTGATACAGAGATTCACGCC chr2D_826 GGAGGTTCATCCTACCAAAACCTGACGCGGCTAATACAGAGATTCACGCC chr4B_1077 -------------------------------------------------- chr6A_1647 GGAGG--------------------------------------------- chr6D_1687 GGAGG--------------------------------------------- chr6B_1687 GGAGG--------------------------------------------- SNPs -----------S------------S-------S----------------- forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 CAATG------ATGCCAAGGAACAGTAG---------------------- chr2B_1_TraesCS2B01G013100 CAATG------ATGCCAAGGAACAGTAGAAAGATTAAAAGATCCGAATAA chr2D_826 GAGTGATGGCAATGGCAAGGAACAGTAAAAAGATTAAA------------ chr4B_1077 -------------------------------------------------- chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs S-S-----------S------------S----------SSSSSSSSSSSS forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 -------------------------------------------------- chr2B_1_TraesCS2B01G013100 AAGGATAAAAAAACGCCATACATTATGAGACGGAGGGAGTACAAAATTAT chr2D_826 -------------------------------------------------- chr4B_1077 -------------------------------------------------- chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------T input_sequence_50031 -------------------------------------------------- chr2B_1_TraesCS2B01G013100 CAAACGTGAACCAACCCCACGCGCGCACGTAAAAGCATACTCTCACATGC chr2D_826 -------------------------------------------------- chr4B_1077 -------------------------------------------------- chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_701 -------------------------------------------------- reverse_2600 CAAACGTGAACCAACCCCA------------------------------- input_sequence_50031 -------------------------------------------------- chr2B_1_TraesCS2B01G013100 ATATGATTTTTCAACATCAATTTTTCATCCAAATTTTGTCGCCGTGCAAA chr2D_826 -------------------------------------------------- chr4B_1077 -------------------------------------------------- chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 -------------------------------------------------- chr2B_1_TraesCS2B01G013100 ATACTACTCCTTGCAGTACAAGCTAGCTTTTAGTAGTATACTTTGTTGGG chr2D_826 -------------------------------------------------- chr4B_1077 -------------------------------------------------- chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 -------------------------------------------------- chr2B_1_TraesCS2B01G013100 CAAATCCTGAAAACTACACAAGTGATCGAGTTCATAGATATATCTTCCAT chr2D_826 -------------------------------------------------- chr4B_1077 -------------------------------------------------- chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 -------------------------------------------------- chr2B_1_TraesCS2B01G013100 GCGTAAGTTTTGATCCATCGATCCAATGAAACTTAATCACGGGACAAGGT chr2D_826 -------------------------------------------------- chr4B_1077 -------------------------------------------------- chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 -------------------------------------------------- chr2B_1_TraesCS2B01G013100 CTTTGTAGTTTTCTGCACAAACATAATGAAATAAGAACAAAAAACAGAAC chr2D_826 -------------------------------------------------- chr4B_1077 -------------------------------------------------- chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 -------------------------------------------------- chr2B_1_TraesCS2B01G013100 TAAAATAATGAGTTTTGTAAAATATAATGAAATAGTGGCATTAGTATTAC chr2D_826 -------------------------------------------------- chr4B_1077 -------------------------------------------------- chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 -------------------------------------------------- chr2B_1_TraesCS2B01G013100 CTTTTAAGACGAAAGAAAATGAAAATTAAACAAAACAACCAATGAGAAAA chr2D_826 -------------------------------------------------- chr4B_1077 -------------------------------------------------- chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 -------------------------------------------------- chr2B_1_TraesCS2B01G013100 GCTTGCACATAATTTACACAAAAAGTGTGTCTTTTAATAATATGCAAGAA chr2D_826 -------------------------------------------------- chr4B_1077 -------------------------------------------------- chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 -------------------------------------------------- chr2B_1_TraesCS2B01G013100 TAAGAATATAATAATGCTATTTTATAATAAAATATTTCATAAAAACAAAT chr2D_826 -------------------------------------------------- chr4B_1077 -------------------------------------------------- chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 -------------------------------------------------- chr2B_1_TraesCS2B01G013100 GTATTAGTGGCATTTGTAATACCCTTAAATATAAAACTAAAAAAATGAAA chr2D_826 -------------------------------------------------- chr4B_1077 -------------------------------------------------- chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 -------------------------------------------------- chr2B_1_TraesCS2B01G013100 CTAATGAAGTTATTAAGTAAGAATGAATTAAGCCAGCCACCAACACTTCA chr2D_826 -------------------------------------------------- chr4B_1077 -------------------------------------------------- chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 -------------------------------------------------- chr2B_1_TraesCS2B01G013100 AAAGCTGCCTGATTTTCATGTTGAGAAAAGAGTGAAAAATAGGCAGAGAG chr2D_826 -------------------------------------------------- chr4B_1077 -------------------------------------------------- chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 -------------------------------------------------- chr2B_1_TraesCS2B01G013100 TCCTAATAGATTTTTTTCAACACAGAGTTCGATTATGCACGGTTGATTGC chr2D_826 -------------------------------------------------- chr4B_1077 -------------------------------------------------- chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 -------------------------------------------------- chr2B_1_TraesCS2B01G013100 CAATGGATTTGCATGAAGATCTAAAGAAGACCTTGATGTAACCATTGCCT chr2D_826 -------------------------------------------------- chr4B_1077 -------------------------------------------------- chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 -------------------------------------------------- chr2B_1_TraesCS2B01G013100 TGCTGATGTTACGTTGTGTTTTTGGCCATGTGTTTCGTTTAAATGATTGT chr2D_826 -------------------------------------------------- chr4B_1077 -------------------------------------------------- chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 -------------------------------------------------- chr2B_1_TraesCS2B01G013100 TTATGTTGCACCAACAATGATGTCAACTTTTTCTCCATTTAGGTAGAAAC chr2D_826 -------------------------------------------------- chr4B_1077 -------------------------------------------------- chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 -------------------------------------------------- chr2B_1_TraesCS2B01G013100 AAATAGTATGGTTTTGCAAATCATGTGTGATTTATTCTTTTGCGGTATAT chr2D_826 -------------------------------------------------- chr4B_1077 -------------------------------------------------- chr6A_1647 -------------------------------------------------- chr6D_1687 -------------------------------------------------- chr6B_1687 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_701 -------------------------------------------------- reverse_2600 -------------------------------------------------- input_sequence_50031 ---------------------------- chr2B_1_TraesCS2B01G013100 CAGGTTGTGATGTGTTATTATGTGCTCA chr2D_826 ---------------------------- chr4B_1077 ---------------------------- chr6A_1647 ---------------------------- chr6D_1687 ---------------------------- chr6B_1687 ---------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_701 ---------------------------- reverse_2600 ----------------------------