>input_sequence_49964
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-------------ATGACGATCGAGCTGCAGACGAGGCCGTCGCTCCCGGCGCCGGCGGGGACGCCACCGCGCGCGGGCA
CGGGGCTGCCGCCGGGGTTCCGGTTCTACCCCACGGACGAGGAGCTGATCGTGCACTACCTCCGCAGGCGCGCCGCCGCG
GCGCCCTGCCCGGCGGCCGTCATCGCGGAGGTGGACATCTACAAGCTGGACCCCTGGGAGCTGCCGTCCCGCGCCGTGTT
CGAGGGCGACAACGACGAGTGGTACTTCTTCAGCCCCCGCGACCGCAAGTACCCCAACGGCGTCCGCCCCAACCGCGCCG
CCGGGTCGGGCTACTGGAAGGCCACCGGCACCGACAAGCCCATCACGGCCGGCGGCGTGCCCGGCGGGGAGGTGGTCGGC
GTGAAGAAGGCGCTCGTCTTCTACCAGGGGCGTCCACCCAAGGGGCTCAAGACCAACTGGATCATGCACGAGTACCGCCT
CGCCGACGCCCACGCCGCCGCCGCCGCGCACACCTACCGCCCGCCCACGCGGTTCAAGGCCTCCTCCTCCATGAGGGTAC
GTAACGTCGTTCATGCATGTCTCTCTCCATCG---------TTTTGTATCTTCATTTTTTCTACTCCTT-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------TAATTCCATGTTTTAATGC-TCTTCTAGATTACGA--------ATCTTTTCTGCGGTTCCAAATGATC
GAAG---------CGTTCGAGCTAGCTAGGAATCTTTTGTTCTCTTCTTA--------TGAGTTGCGTGTCTGTGGATGT
CAGTGAGTTAAGCTCGA--------GCAAGCAACTCG--------CCCTGGTCAATGAACCAGGCAGCCACTCTCCGTCC
TATTAGCTATAGTTTCTTTTACCCATGGGACCTTCTTT-CCCCAAGAAAGAGACTTGCATTATCATCCTT----CAAGCT
ACAGCCTACTAGCTAACCTAGCTACCTGTCAAGCATAGCTAGCGACTGTTTGTTGCAACATACATACACGTGT-----GT
GCTGATTTTCCTTCTTGTGTGCGTGC----GTGCAGCTCGACGATTGGGTGCTCTGCAGGATCTACAAGAAGCCCAACCC
GCAGCAGCTGTCGCCCTTCTACGAGCCGTCGCCGTCGCC------GTCGTCCATGGACGCCAGCCTCGGCCTCGGCCACC
ACCACCACCACCATCAGTACCAGCAGCAGCAGCACCACCAGCAGCA---AGAGGACACCTCCTCCTCCTCCCGGATGCTG
CCGAGGAATCCGTCCGTCTCGGACTACCTCGTGGACTACTCCGCCGTCTCGGAGCTCTTCGACAGCATGCCGCCGCCACC
ACAGCCGGAGACGACTGGAAGCTCTGCTGGCCAGTTCTTCCTCGGCACCACTGCT---GGCGCCGGCGACGGCGAGGCCA
GCACGGCGCGGAAGAGGCAGGCGACGGCGGACAGCAACAACGATGGTGAAATGTCGTCGTTGCACGCTTCCAAGAGGTGG
TTGGGCAGCGATGGGTCCAT---GACGATGATGAACGGCGGCTTCTCCATATTTGGGCCAGACCAGCCTTCCCAGCAGGA
CAGGATATGA----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------
>chr3D_1_TraesCS3D01G078900
AGCCCAACTTTTTTTAAGGGATCAAATGTATACTTTGTGTAAACTTGAAGGACCAAAAACATACCTTTCTCTTTCATAAA
TATTATAGTTGTGTCGGTTGTTATACATATATGGCAATAGAAACTAGTTGTGAAACTTGCATTTTAAAGA-CGTGTTAAG
TCCAAAAATGCGCCTTTTTGTGAAGTGGTGGGAGTAGCTACCTGAAATTTCTGTGGACTCAGTTACTAAAAATTGCGCAC
TACCAATTCTTAAGTT-CACTCTTGAAGTGTGCAATTAGAACCGTATTGCACTTTTGAGCTTGCATTTCATATAGTGACA
-------TAGATGAGAATGATTAAATCTTGATCTAAATGCTTAGCAATTTCCTGGAAATATTTAAGCGATTCTCAATCAA
TTTGTATCTTGT-----------AGTCTAGACATCTCCAATGATTTTCCGAGGTTTGCATTCCAGCCATGAATATAATTT
TCTTAGATATATCTAGCT-------------------ATGTGCATGCATGCATGTATAGGAATATGGAGTCAATGAGAAC
ACACATAAAAACACCTGGTATTCATGTGCTGTTCCTATATATGGTATTCCTGTGGGACCATCAACACTTCCCGGTCCTAC
AACATCGACCTTAATATCCATCTTTTCCAATCATTTG-ACAATTGATTTC-TTCGTCCATTCATTTTGCTCGTGTCTTTT
TCAGATTTTCCCACTCTCGTTCTCATGTGGCACAAAAAAGAAAGAAAAGATTCCAACAAATTAAAAGATTCTAGCCAA--
GTGAGCACTGATGACGTGACATGGATGGACACGCACGTACGGCAGGGCCCTTGCATTCATCATCCCTCTCGTCACCGGCG
GCCAAGAATTACAAGAGCCTGCCATGCACCGGAGCGCCTCC-CGCCTTTATAACCGCACCCATCGCCTCCACCTCTGAAA
ATTTCAGTTCTCCTCCGTCTCGACCCACCTTCCCTTCCCTTCCCCCTCACCCCGCCCTGAG--TCTGACCGAGCGTTCGG
GTTGTG-------ATGACGATCGAGCTGCAGACGAGGCCGTCGCTCCCGGCGCCGGCGGGGACGCCACCGCGCGCGGGCA
CGGGGCTGCCGCCGGGGTTCCGGTTCTACCCCACGGACGAGGAGCTGATCGTGCACTACCTCCGCAGGCGCGCCGCCGCG
GCGCCCTGCCCGGCGGCCGTCATCGCGGAGGTGGACATCTACAAGCTGGACCCCTGGGAGCTGCCGTCCCGCGCCGTGTT
CGAGGGCGACAACGACGAGTGGTACTTCTTCAGCCCCCGCGACCGCAAGTACCCCAACGGCGTCCGCCCCAACCGCGCCG
CCGGGTCGGGCTACTGGAAGGCCACCGGCACCGACAAGCCCATCACGGCCGGCGGCGTGCCCGGCGGGGAGGTGGTCGGC
GTGAAGAAGGCGCTCGTCTTCTACCAGGGGCGTCCACCCAAGGGGCTCAAGACCAACTGGATCATGCACGAGTACCGCCT
CGCCGACGCCCACGCCGCCGCCGCCGCGCACACCTACCGCCCGCCCACGCGGTTCAAGGCCTCCTCCTCCATGAGGGTAC
GTAACGTCGTTCATGCATGTCTCTCTCCATCG---------TTTTGTATCTTCATTTTTTCTACTCCTT-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------TAATTCCATGTTTTAATGC-TCTTCTAGATTACGA--------ATCTTTTCTGCGGTTCCAAATGATC
GAAG---------CGTTCGAGCTAGCTAGGAATCTTTTGTTCTCTTCTTA--------TGAGTTGCGTGTCTGTGGATGT
CAGTGAGTTAAGCTCGA--------GCAAGCAACTCG--------CCCTGGTCAATGAACCAGGCAGCCACTCTCCGTCC
TATTAGCTATAGTTTCTTTTACCCATGGGACCTTCTTT-CCCCAAGAAAGAGACTTGCATTATCATCCTT----CAAGCT
ACAGCCTACTAGCTAACCTAGCTACCTGTCAAGCATAGCTAGCGACTGTTTGTTGCAACATACATACACGTGT-----GT
GCTGATTTTCCTTCTTGTGTGCGTGC----GTGCAGCTCGACGATTGGGTGCTCTGCAGGATCTACAAGAAGCCCAACCC
GCAGCAGCTGTCGCCCTTCTACGAGCCGTCGCCGTCGCC------GTCGTCCATGGACGCCAGCCTCGGCCTCGGCCACC
ACCACCACCACCATCAGTACCAGCAGCAGCAGCACCACCAGCAGCA---AGAGGACACCTCCTCCTCCTCCCGGATGCTG
CCGAGGAATCCGTCCGTCTCGGACTACCTCGTGGACTACTCCGCCGTCTCGGAGCTCTTCGACAGCATGCCGCCGCCACC
ACAGCCGGAGACGACTGGAAGCTCTGCTGGCCAGTTCTTCCTCGGCACCACTGCT---GGCGCCGGCGACGGCGAGGCCA
GCACGGCGCGGAAGAGGCAGGCGACGGCGGACAGCAACAACGATGGTGAAATGTCGTCGTTGCACGCTTCCAAGAGGTGG
TTGGGCAGCGATGGGTCCAT---GACGATGATGAACGGCGGCTTCTCCATATTTGGGCCAGACCAGCCTTCCCAGCAGGA
CAGGATATGATCCGTGCTACCGTGTTAATTAGGGCTAGAAGAAAGCAAGCTAGCGACTTAACTACAGCCACACACTAGCT
AGTTGATTATTCACTATTATTGATGCCGATCGATCAATGGATCGAGGGGGATA----TTACTCATGCATAATTTGTAGGT
CAGGCTAAATTAGTACA----ATATATTGTGTAAAGTTAGTGTAACATA---TTATATAGGCCGGAGTAGCTAGAAGAAG
AACACAATTAATA----AGATAGCTAGAACTGATTGTAGATGCATGTCTAATTTGTATGTATATGTATATGTAGGGTGAA
CTAGAATGTAAATTGTGAACATTCATTGAATAAAATTCTCATTA-CTTTGAAATTTCTTTCCTTATTTATTGTAACCAAG
TCTTGGACTTTTGGATGAATCAATTCGAGCTTGGAATACTAGCAACTTATTATGCATGATTTAAGTTAGGGGAAAGAGAC
GTGCATAATTGAAGTGCAGGTACTTTAAAATAAAGAG--GAGAGCAATGGCTTGTCTTTTGTTCTACTGCCAGAAAGGTT
GGATTCCTTAGGAAGTCATCACACCAA--GAAAGATGAGTTGATCGAGAGAGACACCCATGTATGTATGTAGACGAACAC
GCAATAAGCTAAGCTAGTTTGAAAAAAGAATAAGTAAAAAAACATTTAG---AAAAAAAGACATCTTTTGATATTCCCAT
GCATGGACACCGATGGAAGCCAGTGTGTGTCCCACCTAAAAGAGGCCGGGACCACAAAATTCT-----------------
----------AAAAAGACAAATCCAACTATGAATAGTATCAAAAATCAAATTACAAACACTATCACGGTTGAATTTCTAT
TTTATTTA----TTTATTTTGCTTCTCCATACGTAGGTTGAATCGATTTCAGAATTGTACACATTGTACAAACATATCTT
ATTGACTCACTTAATATTTTAAGAAAAATGAAAATCATAGAGTGGTGATATTGTGCATTGGCAGCACCGGGAGTGCTTGG
GCACTAGATATCCTCTCTATGTTA
>chr3A_72
-----------------------------------------------------------------------TTTCATAAA
TATTATAGTTGTGTCGGTTGTTATACATATATGACAATAGAAACTAGTTGTCAAACTTGCATTTTAAAGACCGTGTTAAG
TCCAAAAATGCGCCTTTTTATTAAGTTGTGGGAGTAGCTAGCTGAAATTTCTGTGGACTCAATTACTAAAAATTGCACAC
TACCAATTCTGAAGTTTCACTCTTGAAATGTGCAAGTAGAACCTTATTGAACTTTTGAGCTTGCATGGCATATAGTGACA
-------TAGATGAGAATGATTAAATCTTGATCTAAATGCTA----------TGGAGATATTTAAGCAATTCTCAATCAA
TCAATTAGCAGTAGGGGGGTAGGAGTGTAGACATAGCCCATGATTTTCCGATGTTTGCATTCCAGCGATGAATATAATGT
TCTCAGATATGTCTCAGCTAGCAGCAGATGACTATGCATGTGAATGCATGCATGCATAGGAATATGGAGTCAATGAGAAC
ATACATAAAAACACCTGGTATCCATGTGCTATTCCTATATATGGTATTCCTGTGGGACCATCAACACTTCCCGGTCCTAC
AACATCGAGCTTAATATCCATCTTTTCCAATCATTTGCACAATTGATTTC-TTCGTCCATTCATTTTGCTCATGTCTTTT
TCAGATTTTTCCACTCTCGTTCTCATGTGGCACAAAAAAGAAAGAAAAGATTCCAACAAATTAAA-GATACTAGCCAAGT
GTGAGCACTGATGACGTGACATGGATGGACACGCACGTACGGCAGGGCCCTTGCAATCATCATCCCTCTCGTCACCGGCG
GCCAAGAATTACAGGAGCCTGCCATGCACCGGAGCACCTCAGCGCCTTTATAACCGTACCCATCGGCTCCACCTCCGAGA
ATTTCAGTTCTCCTCCGTCTCGACCCACCTTCCCTTCCCTTCCCCCTCACCCCGCCCTGAGTCTCTGACCGAGCGTTCGG
GTTGCCACTTGCCATGACGATCGAGCTGCAGACGAGGCCGTCGCTCCCGGCGCCGGCGGGTGCGCCACCGCGCGCGGGCA
CGGGTCTGCCGCCGGGGTTCCGGTTCTACCCCACGGACGAGGAGCTGATCGTGCACTACCTCCGCAGGCGCGCCGCCGCG
GCGCCGTGCCCGGCGGCCGTCATCGCGGAGGTGGACATCTACAAGCTGGACCCCTGGGAGCTCCCGTCCCGCGCGGTGTT
CGAGGGCGACAACGACGAGTGGTACTTCTTCAGCCCCCGCGACCGCAAGTACCCCAACGGCGTTCGCCCCAACCGCGCCG
CCGGGTCCGGCTACTGGAAGGCCACCGGCACCGACAAGCCCATCACGGCCGGCGGCGTGCCCGGCGGCGAGGTGGTCGGC
GTGAAGAAGGCGCTCGTGTTCTACCAGGGGCGTCCACCCAAGGGCCTCAAGACCAACTGGATCATGCACGAGTACCGCCT
CGCCGACGCCCACGCCGCCGCGGCCGCGCACACTTACCGGCCGCCCACGCGCTTCAAGGCCTCCTCCTCCATGAGGGTAC
GTGCTAACGTTCATGCATGTCTCTCTCGGTTCTCTCCATCATTTTGTATCTTCATTTTTTCTACTCCTT-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------TAATTCCATGTTTTAATGC-TCTTCTAGATTACGA--------ATCTTTTCTGCGGTTCCAAATGATC
GAAG---------CGTTCGAGCTAGCTAGGAATCTTTTGCTCTCTTCTTATTATTGGTTGCGTTGCGTGTGTGTGGATGA
CAGTGAGTTAAGCTCGACTGCTCGAGCAAGCAACTCAT---------CTGGTCAATGAACTTGGCAGCAACTCACCTTCG
TG---------GTTTCTTTTACCCATGGGATCTTCTTACCCCCAGGAAAGAGACTTGCATTATTACCCTAGCTACAAGCT
ACATCCTACTAGCTAAGCTA----CCTGTCAAGCTTAGCAAGCGACTGTTTGTTGCAACATACACGCACACACGTGTGGT
ACTGATTCTCCTT---------GTGCATGCGTGCAGCTGGACGATTGGGTGCTCTGCAGGATCTACAAGAAGCCCAACCC
GCAGCAGCTGTCGCCCTTCTACGAGCCGTCGCCGTCACCGTCGCGGTCGTCCATGGACGCCAGCCTCGGCCTCGGCCACC
ACCAC---CACCATCAGTACCACCACCACCAGCAG---CAGCAGCAGCAAGAGGACACCTCCTCCTCCTCCCGGATGCTG
CCGAGGAATCCGTCCGTCTCCGACTACCTCGTGGACTACTCCGCCGTCTCGGAGCTCTTCGACAGCATGCCGCCGCCACC
ACAGCCGGAGAC---TGCAAGCTCTGTCGGCCATTTCTTCCTCGGCACCACTGCT---GGCGCCAGCGACGGCGAGGCCA
GCACGGCGCGCAAGAGGCAGGCGACGGCGGACAGCAACAACGATGGTGAAATGTCGTCGTTGCACGCTTCCAAGAGGTGG
TTGGGTAGCGATGGGTCCAT---GACGATGATGAACGGCGGCTTCTCCATATTTGGGCCAGACCAGCCTTCCCAGCAGGA
CAGGATATGATCCATGCTACCTTGATAATTAGGGCTAGGAGAAAGGTAGCTAGCGATTTGACTATTGCCACACTATAGCT
AGTTGATTATTCACA------GATGCCGATCGATCAATGGATCGTGGGGGATATATATTACTCATGCATAATTTGTAGAT
CAGGCTAAATTAGTACAGTATATATATTGTGTAAAGTTAGTGTAACATACTATTATATAGGCCGGACTAGCTAGAAGAAG
AACACAATTATCTTCCTAGATAGCTAGAACTGATTGTAGATGCATGTCTAATTTGTGTG--TATGTATATGTAGGGTGAA
CTAGGGTGTAAACTGTAAACATTCATTGAATAAAATTCTTATTAAGTTTGAAATTTCTTTCCTTATTTATTGTAACCAAG
TCTTGGACTTTTGGATGAATCAATTCGAGCATGGAATACTAGCAACTTAGCATGCATGCTTTATGTTAGGGGAAAGAGAC
GTGCATAATTGAAGTGCATGTACTTTAAAATAAAGAGGAGAGAGCAATGGCTTGTCTTTTGTTCTACTCCCAGAAAGGTT
GGATTCCTTGAGAAGTCATCGCACCCAAGGAAAGACGAGTTGATCGAGAGAGACACCCATGTAAATATGTAGACGAACAA
GCAATAAGCTAAGCTAGTTGGGAAAAAGAAGAAGTAAA--AATTATTAG---AAAAAAAGACATATGCTGATATTCCCAT
GCATGGACACCGATGGAAACTAGTGTGTGTCCCACCTAAGAGT--TCGGCACCACAAAATTCTATGTAGAGCATGAAAAC
ATTTTACTGGAAAAAGACAAATCCAACTATGAATAGTACCAAAAATCAAATTACAAACACCATTACGGTTCAATTTCTA-
---ATTTT----TTTATTTTGCTTCTCCATACGTAGGTTGAATCGTTTTCAGAATTTTACACATTGTACAAACATATCTT
ATCAACTCACTTAATATTGTAAGAAAAATGAAAC-CATATAGTGGTGATATTGTGCATTGGCAGCACCGGGAGTGCTTGG
GCACTAGATATCCTCTCTATG---
>chr3B_72
-----------------------------------------------------------------------TTTCATAAA
TGTTATAGTTGTGTCT-TTGTTATACATATATGGCAATAGAAACTAATTGTCAAACTTGCATTTTAAAGATCGTGTTATG
TCCAAAAATGCGCCTTTTTGTGAATTGGAGGGGGTAGCTACCTGAAATTTTTGTGGACTCCGTTACTAAAAATTGCACAC
TACCAATTCTTAAGTT-CACTCTTGAAGTGTG-------AACCTTATTGCACTTTTGAGTTTGCATGCTATATAGTGACA
TACGGAGTAGATGAGAATGATTAAATCTTGATCTAAATGGTTAGCAATTTGCTGGAGATATTTAAGCAATTCTCAATCAA
TTTGTATCTTGT-----------AGTCTAGATATCTCCAATGATTTTCCGAGGTTTGCATTCCAGCCATGAATATAATTT
TCTTAGATATATCTAGCT-------------------ATCTGCATGCATGCATGTATAGGAATATGGAGTCAATGCGAAC
ATACATAAAAACACCTGGTATTCATCTGCTATTCCTATATATGGTATTCCTGTGGGACCATCAACACTTCCCGGCCCTAC
AACATCGAGCTTAATGTCCATCTTTTCCAATCATTTG-ACAACTGATTTTTTTCATCCATTCATTTTGCTCATGTCTTTT
TCAGATTTTTCCCA-CTCGTTCTCATGTGGCACAAAAAAGAAAGAAAAGATTCCAACAAATTAAAAGATTCTAGCCAA--
GTGAGCACTGGTGACGTGACACGGATGGACACGCACGTACGGCAGGGCCCTTGCATTCATCATCCCTCTCGTCACCGGCG
GCCAAGAATTACAG-AGCCTGCCATGCACCGGAGCACCTCC-CGCCTTTATAACCGTACCCATCGGCTCCACCTCGGAAA
ATTTCAGTTCTCCTCCGTCTCGACCCACCTTCCCTTCCCTTCCCACTCACCTTGCCCTGAGTCTCTGACGGAGCGTTCGG
GTTGTG-------ATGACGATCGAGCTGCAGTCGAGGCCGTCGCTCCCGGCGCCGGCGGGTGCGCCACCGCGCGCGGGCA
CGGGGCTGCCGCCGGGGTTCCGGTTCTACCCGACGGACGAGGAGCTGATCGTGCACTACCTCCGCAGGCGCGCCGCTGCG
GCGCCGTGCCCGGCGGCCGTCATCGCGGAGGTGGACATCTACAAGTTGGACCCGTGGGAGCTCCCGTCGCGGGCCGTGTT
CGAGGGCGACAACGACGAGTGGTACTTCTTCAGCCCCCGCGACCGCAAGTACCCCAACGGCGTCCGCCCCAACCGCGCCG
CCGGGTCGGGGTACTGGAAGGCCACCGGCACCGACAAGCCCATCACGGCCGGCGGCGTGCCCGGCGGCGAGGTGGTCGGC
GTGAAGAAGGCGCTGGTGTTCTACCAGGGGCGTCCCCCCAAGGGGCTCAAGACCAACTGGATCATGCACGAGTACCGCCT
CGCCGACGCCCACGCCGCCGCCGTCGCGCACACCTACCGGCCGCCCACGCGCTTCAAGGCCTCCTCCTCCATGAGGGTAC
G----------CATGCATGTCTCTCTCCATCTCTGTTTTGGTAACCGCTCGAGATATTCGGTTACCGCGCGGTTACCACG
TTTATCGCTCCCCCACGATAAACACTCATACCGAGCAAAAAATCCCGATTTTTTTGAAATATTTGAATTCAAACGATCGC
CTTGTAGTTAAATAAGCTGCATCTGTGTTTTAAACAGAGAACTTATCGTGGCCCAGTGGCAAAAGGTGTTTTATCGCCAG
ACGTTGGTCGAGGGTTCGACTCGGGCTACGCACTGCTTTTTTAAACTTTTAGAGATGCAAAAGTGTTTACCTATGAAAAA
TTCTGGAGAAGACAGGGATCGAACTCGGGGCGCCTGAGCAAGGGATAGCTGCGGGTTGAGAGCCACTACGGTAGAACAAC
CTTACTGACTATTAATAGTTAAAAGCTCATATATCTAACTCAAAAAAATTGAATTCAAAATTTGGTTTTAAATTTCGTCC
GAATTTTTTTCGGTAATTCGTGGTTACCGAGAATCTCGGTGCCCCTCGAGAAAAAAATCTTCACTTGGGATCCAAAACCT
TGCTCTCCATCGTAATTTCATGCTTTATTATTTCTTCTTGATCACACATGCAAGCATGTTTTCTGCGGTTGCAAATGAAC
GAAGAAGGCATCTCGTTGGAGCTAGCTAGGAATCTTTTGCTCTCTTCTTATTATT-----AGTTGCGTGTGTGTGGATGT
CAGTGAGTTAAGCTCGA--------GCAAGCAACTCACCCTGGGTCCCTGGTCAATGAACCACT------------GTCC
TATTAGCTATAGTTTCTTTTACCCATGGGATCTTCTTT-CTCCAAGAAAGAGACTTGCATTATCACCCTT----CAACCT
ACAACCTACTAGCTAACCTAGCAGCTACCTGT------CAAGCGACTGTTTGTTGCAACATACACG--------TGTGCT
TCTGATTTTCCTTCTTGTGTGCGTGCATGCGTGCAGCTCGACGATTGGGTGCTCTGCAGGATCTACAAGAAGCCCAACCC
GCAGCAGCTGTCGCCCTTCTACGAGCCGTCGCCGTCGCC------ATCGTCCATGGACGCCAGCCTCGGCCTCGGCCACC
ACCAC---CACCATCAGTACCAGCAGCAGCGACAG---CAGCAGCA---AGAGGACACCTCCTCCTCCTCCCGGATGCTG
CCGAGGAATCCTTCCATCTCCGACTACCTCGTGGACTACTCCGCCGTCTCGGAGCTCTTCGACAGCATGCCGCCCCCACC
ACAGCCGGAGACGACTGCAAGCTCCGCCGGCCAGTTCTTCCTCGGCACCACTACTACTGGCGCCGGCGACGGCGAGGCCA
GCACGGCGCACAAGAGGCAGGCGACGGCGGACAGCAACAACGATGGTGAAATGTCGTCGTTGCACGCTTCCAAGAGGTGG
TTGGGTAGCGATGGGTCCATGACGACGATGATGAACGGCGGCTTCTCCATATTTGGACCAGACCAGCCTTCCCAGCAGGA
TAGGATATGATCCGTGCTACCGTGTTAATTAGGGCTAGGAGAAAGCAAGCTAGCGACTTAACTATGGCCACA------CT
AGTTGATTATTCAC---TATTGATGCCGATCGATCAATGGATCGAGGGGGATA-ATATTACTCATGCATAATTTGTAGAT
CAGCCTAAATTAGCACAG----TATATTGTGTAAAGTTAGTGTAACATATTATAGGCCGG------------AGTAGAAG
AACACAATTATGTCACTAGATAGCTAGAACTGATTGTAGATGCATGTCTAATTTGTGTGTATATGTATATGTAGGGTGAA
CTAGGGTGTAAGTTGTGAACATTCATTGAATAAAATTCTTATTA-GTTTCAAATTTCTTTCCTAATTTATTGCAATCAAG
TCTTGGACTCTTGGATGAATCAATTCGAGCTTGGAATACTAGCAACTTATTATGCATGCTTTATGTTAAGGAAAAGAGAC
GTGCATAATTGAAGTGCAGGTACTTTAAAATAAAGGG--GAGAGCAATGGCTTGTCTTTTGTTCTACTGCCAGAAAGGTT
GGATTCCTTGGGAAGTCATCGCACCCAAGGAAAGACGAGTCGATCGAGAGAGACACCCATGTAAGTATGTAGACGAACAC
GCAATAAGCTAAGCTAGTTTGAAAAAAGAATAAGTAAA--AAAACAGTTAGAAAAAAAAGACATCTACTGATATTCCCAT
GCATGGACACCGATGGAAGCCAGTGCGTGTCTCGCCTAAAAGAGGTCGGGACCACAAAATTCT-----------------
----------AAAAAGACAAATCCAACTATGAATAGTATCAAAAATCAAATTACAAACACCATCATGGTCGAATTTCTAT
T---TTTT----TTTATTTTGCTTCTTCATACGTAGGTTGAATCGATTTCAGAATTTTACACAATGTACAAACATATATA
ATTGACCCACTTAATATTTTAAGAAAAATGAAAATCATAGACTGGTGATATTGTGCATTGGCAGCACCGGGAGTGCTTGG
GCACTAGATATCCTCTCTATGTTA
>chr3B_2774
--------------------------------------------------------------------------------
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----------------------------------------------------------------GTATATGTAGGGTGAA
CTAGAATGTAAATTGTGAACATTCATTGAATAAAATTCTCATTA-GTTTCAAATTTTGTTCTTTATTTATTGTAACCAAG
TCTTGGACTTTTGGATGAATCAATTCGAGCTTGGAACACCAGCAACTTATTATGCATGCTTTATGTTAGGGGAAAGAGAC
GTGCATAATTGAAGTGCATGTACTCTAAAATAAAGAG--GAGAGCAATGGCTTGTCTTTTGTTCTACTGCCAGAAAGGTT
GGATTCCTTGGGAAGTCATCGCACCCAAGGAAAGACGAGTCGATCGAGAGAGACACCCATGTAAGTATGTAGACGAACAC
GCAATAAGCTAAGCTAGTTTGAAAAAAGAATAAGTAAAAAAAAACAGTTAGAAAAAAAAGACATCTACTGATATTCCCAT
GCATGGACACCGATGGAAGCCAGTGTGTGTCCCACCTAAAAGAGGTCGGGACAAAAAAGTTCT-----------------
----------AAAAATACAAATCCAACTATGAATAGTATCAAAAATCAAATTACAAACACTATCACGGTTGAATTTCTA-
---TTTTTTTAATTTATTTTGCTTCTCCATACGTAGGTTGAATCGATTTCAGAATTTTACAAATTGTACAAACATATCTT
ATTGACTCACTTAATGTTTTAAGAAAAATAAAAATCATAGAGTGGTGATATTGTGCATTGGCAGCACTGGGAGTGCTTGG
GCACTAGATATCCTCTCTATGTTA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------
---------------------------------------------------S----------------------------
----------------------------------------------------------------------------S---
-----------------------------------S-------S----------------------SS------------
--------------------------------------------------S-----S----------S------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-S----------------------------S-------------------------------------------------
--------S--------------------------------------------------------------S--------
---------S----------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------S---------------------S--------------------S--------S---------S----
--------------------------------------------------------------------------------
------------------------------------------------------------SS------------------
--------------------------------------------------------------------------------
-----S--------------------------------------------------------S-----------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------S------------
-----------------S--------------------------------------------------------------
---------------------------------------S-----------S----------------------------
--SSSSS------------------------S------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------S------------------------------S---------
------------------------------------S-------------------------------S----S------
------------------------------S----------------------------------S--------------
---S------------------SS----------S----S------------------------SS---SSSS-------
S-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----SSS--------------------------SSSS------------------------------------------
--------------------S-----------------------------------------------------------
-----------------S---------S----------------------------------------------------
----------S---------------------------------------------------------------------
-----S--------------------------------------------------------------------------
--------------------------------------S-------------------------SS-------SS-----
--------------SSS-------------------------------------------------------------S-
------------------------------------------------------------------S-------------
----------SSS-------------------------------------------S-----------------------
---------------------------------------------S----------------------------------
----------------------------------------------------------S----S----------------
--------------------------------------------------------------------------------
---------S----------S----S---------S---------------------------S----------------
------------------------------------------S-S---------------------SS------------
---------------------------------------------S----------------------------------
--------------------------------------------------------------------------------
-SS----S------------------------------------------------S-----------------------
--------------------------------------------------------------------------------
------------------------
>forward_649
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------CCCGGTCCTAC
AACATCGAC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_2726
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-----CACCACCATCAGTACCAGCA-------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------
>forward_937
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-------------------------------------CCTCCCGCCTTTATAACCGC-----------------------
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>reverse_2727
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------ACCACCATCAGTACCAGCAG------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------
>forward_1606
--------------------------------------------------------------------------------
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-----------------------------------------------------------------CCTCCATGAGGGTAC
GTAACG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_3584
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---------------------------------------------------------------AGTTAGGGGAAAGAGAC
GTGC----------------------------------------------------------------------------
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------------------------
