>input_sequence_49876
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----------------------------ATATATAAAGCTATGCATTCTTAGGGCTAAAGATTGCATTAATTAAATCTTG
AGGGATATATCCTATAAATAAGATTTTATAAACAAAGGAATGTAATTAATTCTTGGTATCAATATATACGCGTGGGGAGA
GTTCTAACACGGCAGACAACTCAACCAAACTGATACCAGCAAGATGGATCATCCACATTTTGCCACACACCACCAGATCA
CAGGAGCGCCTTTTGTTCTCACCATCCATGCTACCCTCCCAGAAGACCTGGTAATCTGGGAGATCCTAGTTCGCCTTCCT
GTGAAGTACCTTATGCTCTACAAATGCTTATTCCCTTCCTGGGATGCTGCCACTACTGATGTCGGCTTCGTTCGCCGCCA
CCGTGAGCTATCTCGCGTGGAACCATTGTCCATGCTCATCATCCCTCGCAAGAGCTCTATCCAGGATGATTTTGAGTTCT
CCCAGGATATCAGTTTCCACCACCTCCATGTGGAAAATACACTCGGCACCATTTGGAACAATAAGGGGGTGGATTTGATG
CTTGAAAAGGTGTGCCCGCCAGGCGAGGAAGGTATTGCAAATAAGATCCTCCCCACACACTGTAATGGCCTAGTGTGCAT
CGCAACCAACAAGGACCAGATATTTATGTGCAACCCAGCCACCCAGGAGCTTGTGGCATTACCACGCGGCACACCAGATG
TTCGCGACATCAAGGAGCCATCAGCAGTTCTTGGCTTTGATGTGTCATGCAATCAGTATGTTGTGGCCAGGTACTTCTAC
CAGTACTTTGAACATAATACGTCTAGTGGAGTTCTCAGTTACGAGATCGGGCATGAAGTCTTTACACTTGGTGGAGACTC
TTGGATGCGTACCGATGAACCACCAGATGCGATTGGGAACACACGACCAGTCTTCACACAGGGGGCCTTTTACTGGGGGA
CTTATGCACCCCATGATCCGCAGGAGAGTGTGCTGGTGCGATTTAGCCTAAGCAATAGGAGGTTCGATGTGGTTCCAAGC
CCACCTCGCTTCACCCATCGTTGTGAAATTGACTATCTAGCAGACCTGGACAACAAGTTGTGCTATGTCAACAGCAACGC
AGACACAAACTTCATTGTGTGGCAGCTGGAGGATGATGGGACAAGACAACCCCAATGGTCACCGCGATGTAGCATTAAAC
CATTGAACGAAGACCTTGGTGGTGAATCCTTCTTCCCAATTTGGGCAGGTTGGGGTGGAATTATAGTTTTTGTGGACTAT
GAAAAGTTGTACTGGTGCCACGAGAGGAGTGGAAATATGAAGGAATTGGTGGACCTTGAAGAGGAAGTGGATTTTGAGCG
ACAAAGGTTACACTATGGTGGTAACTTCTACCGAAGCCATATTGTTCCCTACATGGAGAGTCTCATCTCCATTAAGATGT
GCAACTACTGAAGTTGATTTTAGAGATGTGGTGCATGTAGTTGTCCTAAATTCATCTCTTTTTCATTCATAGTTAAGTTC
ATGTA---------------------------------------------------------------------------
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>chr2B_1_TraesCS2B01G490300
TATGCATGCTGGATAGTGGTATTGGGGTGGAGTAATACTAGTAGACACCATTAAGTTTAACGATCTACTTATCACAGACA
TAATGCCTATATGAGATTATGCCATGAATGATCATAGTTATAATTTACACTATTCTGTTAATTACCCAACAATAATTTGC
CTACCATGCAACTACATGCTTT----------------------------------------------CATCAATACAAA
AAACCTACAATT------------TTCCTTTTACTTTCTTGCCACTTTGCCCTATCACTATTGGTGTTTAATCTTGTGGA
TAGCAAGAACAAGGGGATTGACAACACTCTTATCTTTGGTGGGTGCAAGCAAATTATTTGTTTGTGTGCAGGTACTTCCG
ACGTTATTAGCTTCATGACTCCTGCTGGTTTGATAAACCTTGGTTCTTCATCGAGTGAAATACTTTCTGCTACTGTGCAA
CATCACCCTTCCTCTTCGGGGAAATCCAACACTTCG-TCGTGAGTATCACTTGTATGAGTGCTTGTGGTCGTACCTAGCA
TTGTCTTCTCACCTAGTGCGCCA----AATTCACTTCTGCTAAAAAGGAAAATTATCCCTGAAGGTTCCACTTCTCCAAA
TATTGATTTCTTTATTTCCAGAAATGTTTGGATATGAACAACAAGTAAGGAAACAAGGTTTGTTGGTTATCAAAGTGTTA
TCATTTGGAA---AGAGGCAAGAGCCGGAAAAATCCTTTGG-AAAATAGTTAAAATACCCAATCAAAAGTGTTAAAATAT
GGAGCCAACCGATATCTTATAAAGTACTTATTTTAGACAAAGGATACATGTTAAACTTCTACCAAAATATGTGGATATTA
AACTAAATACCAATGAATAATGGTGGACTCACCCCTTTGTATTACTTGGATTGTAATTAATAAAAATGCAACTACTGATC
TATTTGCATATCCCAGAACGATCTTGAAAATCAATGTATTCCAACTAATAAGATTTCGGAAAAAA-TCATGCAATGTTAA
CTCACGGTAGAAGTTGCGTGCTAAATCAATATATAAAGCTATGCATTCTTAGGGCTAAAGATTGCATTAATTAAATCTTG
AGGGATATATCCTATAAATAAGATTTTATAAACAAAGGAATGTAATTAATTCTTGGTATCAATATATACGCGTGGGGAGA
GTTCTAACACGGCAGACAACTCAACCAAACTGATACCAGCAAGATGGATCATCCACATTTTGCCACACACCACCAGATCA
CAGGAGCGCCTTTTGTTCTCACCATCCATGCTACCCTCCCAGAAGACCTGGTAATCTGGGAGATCCTAGTTCGCCTTCCT
GTGAAGTACCTTATGCTCTACAAATGCTTATTCCCTTCCTGGGATGCTGCCACTACTGATGTCGGCTTCGTTCGCCGCCA
CCGTGAGCTATCTCGCGTGGAACCATTGTCCATGCTCATCATCCCTCGCAAGAGCTCTATCCAGGATGATTTTGAGTTCT
CCCAGGATATCAGTTTCCACCACCTCCATGTGGAAAATACACTCGGCACCATTTGGAACAATAAGGGGGTGGATTTGATG
CTTGAAAAGGTGTGCCCGCCAGGCGAGGAAGGTATTGCAAATAAGATCCTCCCCACACACTGTAATGGCCTAGTGTGCAT
CGCAACCAACAAGGACCAGATATTTATGTGCAACCCAGCCACCCAGGAGCTTGTGGCATTACCACGCGGCACACCAGATG
TTCGCGACATCAAGGAGCCATCAGCAGTTCTTGGCTTTGATGTGTCATGCAATCAGTATGTTGTGGCCAGGTACTTCTAC
CAGTACTTTGAACATAATACGTCTAGTGGAGTTCTCAGTTACGAGATCGGGCATGAAGTCTTTACACTTGGTGGAGACTC
TTGGATGCGTACCGATGAACCACCAGATGCGATTGGGAACACACGACCAGTCTTCACACAGGGGGCCTTTTACTGGGGGA
CTTATGCACCCCATGATCCGCAGGAGAGTGTGCTGGTGCGATTTAGCCTAAGCAATAGGAGGTTCGATGTGGTTCCAAGC
CCACCTCGCTTCACCCATCGTTGTGAAATTGACTATCTAGCAGACCTGGACAACAAGTTGTGCTATGTCAACAGCAACGC
AGACACAAACTTCATTGTGTGGCAGCTGGAGGATGATGGGACAAGACAACCCCAATGGTCACCGCGATGTAGCATTAAAC
CATTGAACGAAGACCTTGGTGGTGAATCCTTCTTCCCAATTTGGGCAGGTTGGGGTGGAATTATAGTTTTTGTGGACTAT
GAAAAGTTGTACTGGTGCCACGAGAGGAGTGGAAATATGAAGGAATTGGTGGACCTTGAAGAGGAAGTGGATTTTGAGCG
ACAAAGGTTACACTATGGTGGTAACTTCTACCGAAGCCATATTGTTCCCTACATGGAGAGTCTCATCTCCATTAAGATGT
GCAACTACTGAAGTTGATTTTAGAGATGTGGTGCATGTAGTTGTCCTAAATTCATCTCTTTTTCATTCATAGTTAAGTTC
ATGTAATAATGTGGTGCTACTAGGTTTTTGCCCCGTACTTCTCGTGTG--------TGGGGACAGCGGGTTTCCTAGTTG
TACATTAATCTTGTTAGTATCTTTTGCATTCCCCTGCTTTCATAAGAACATGTATTATCACTACAAAAGAAATCAAAAGG
AGCTACCATGTGGTTTAAAAAGCTCACAAATATACTAAGTTTCTATCTAGAACAAGATTTTAAATAGCACGCTAAGCTTC
TTAGCAGTGGGCCTCTTTTAAATGTTATAGTGTGATATTTAAAATGTATGTTCATGTGTTTCCACCAAAACCACTTAGCG
CTCGACCTGTTTTAAATGCTATACACTAC--CAAAAAAACACTTCTGTGATGATACATGTTTGTCACAGTAGGTCACATT
TTCTGTCATGCATGTACATCCATGACGATTTTATGA-AGAATCAAGATAGTCATACCTGTGTTGTCGTATAAGTGTTCCA
TGACAATACTAAAATTATCATCACAGAAAATGTCCACTTCCATGACGATAAATTTCGTGTCATGTAAGTGTTTTCGTGAA
TGATAACCGACACATGGCATCCACCACAACTGATTGCTGTTAAGCTATTGGGTTCGGTTTTGGATCCGATAACCCGTTAA
TAGCAACGACCAATGGTGATTTTCCACGTGTGAAATTCTCATTGGTCGAAGGAAACACGTGTAAGCTCCTCATTGGGACA
CATGTGATCCACCGAATGGACAGGACGACCCTATGATACGCCGACACATTGCTCGGCCCAACAGCGGCCCATTTAGGTTA
AAAGGCTAGCCTATTTGACTTTGTCAAAAGGTAGCGGCCCGGCCCACGGAAAGCCTGTTAACGGCCTAGTCGCATATATC
CTATTTACAGCCCGCTAACTCACGACCCGTTATGGCCTATCTGAATTAGGCCCAGTAGCGTCATCTGGGCCATTCAATAT
GATTCCAGCCCATTGTGACTTTCAGCCCACGTATGGCCCATGACGTCTTTCGGCCT
>chr7D_1
TATGCATGTTAGACAACGGTCTTGGGGTGGAGTAATAGTAGTAGACGTCGGTAAGTTTAATGGTCTACTTATCACAGACG
TAATGCCTATGTGAGATTATGCCATGAATGATCATAGTTATAATTTGTGCTATTTTGTCAATTGCCCGATAGTAATTTGT
CTACCATGCCACTACATGCTTTTGAGAGAGACGCCACTAGTGAACATATGGCCCTGAGTCTAGAATAA------------
-------------TTGCTTTTTACTTTCTTTTACTTGCTTGACAATTTTCGCTATCACTATTGCT-TTTAATCTTGTAGA
TAGCAAGAACAAGGAGATTGACAACCTCCTTGCGTTTGTTGGGTCCAAGTAAATTATTTGTTTGTGTGCAGTTAATGTCA
ATGTTGTAAGATTCGTGACTCCTACTGGTTCGATAAACGTTGGTTCTTAACTAGGGGAAATATTTTCTGTTACTGTGCTA
CATCACCCTTCCTCTTCGGGGAAATCCAACAACTCTATCATGAGTAGCACTT----------------------------
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>chr2D_3
--TGCATGCTGGATAGCGATCTTGGGGTCGAGTAATAGAAGTAGACATCAGTAAGTTTAACGATCTACTTATCACAGATG
TAATGCCTATATGAGATTATGCCATGAATGATCATATTTATAATTTGCGCTATTTTGTCAATTACTCAATAGTAATTTGC
CTACCATGCCACTACATGCTTTCGAGAGAGTTGCCACTAGTGAACCTATGGCCCCGAGGTCTATTTTCCATCAATACAAA
AAAATCTTACAGTTTGCCTTTTACTCTCTTTTACTTTCTTGCCACTTTGCCCTTTCACTATTGGT-TTTAATCTTGTAGC
TAGGAAGAACAAGGGGATTGACAACCCTCTTGCCTTTGGTGGGTGCAAGCAAATTATTTGTTTGTGTGCAGGTACTGCCA
ACGTTATTAGCTTCTTGACTCCTACTGGTTTGATAAACCTTGGTTCTTCACCGGGTGAAATAGTTTCTGCTGATGTGCAA
CATCACCCTTCCTCTTCGGGGAAATCCAACACTTCG-TCGTG--------------------------------------
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>chr2D_459
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-------------------------------------TCGTGAGTAGCACTTGTATGAGTTCTTGTGGTCATACCTAGTG
TCGTCTTCTCACCTGGTGCGCCAGATTAATTCACTTCTGCTAAAAAGGAAAATTATCCCCGAAGGTTCCACTTCTCCGGA
TATTGATTTATTTCTTTCCAGAAATGTCTGAATATGAACAACAAGTAAGGAAACAAGGTTTCTTCGTTCTCCAAGTGTTA
TCATTTAGAAAAAAAAGACATGATCTGGCAAAATCCTTTGAAAAAATGGTCAAAATAGCCAATCAAAAGTGTCAAAATAT
GGAGCCATCCGATATCTTATAAAGTACTTATGTTAGACAAAGGATACATGCTAAATTTCCACCAAAATATGT-GATATTA
AACTAAATACCAATGAATAATGGTGGACTCGCCCCTTTGTATTATTTGGATTGTAATTAATAAAGCCGCAACTAATAATC
TATTTGCATATCCCAGAACAATCTTGGAAATCAATGTATTCCAACTAATAAGATTTCGAAGCAAATTCATGCAATGTTAA
CTTGCGGTAGAAGTTGTGTGCTAAATCAATATATACAGCTATACAATCCTAGGGCTAAAGATTGCGTTAATTAAATCTTG
AGGGATATATCCTCTAAATAAGATTTTATATACAAAGGAATGTAATTAATTCTTGGTATCCATATATACG--TGTGGAGA
GTACTAACACGGCAGACAACTCAACCAAACTGATACCAGCAAGATGGATCATCCACATTCTGCCACACACCACCAGATCA
CACAAGCACCTTTTGTTCTCACCATCCATGCTACCCTCCCAGAAGACCTGGTAATTTGGGAGATCCTAGTTCGCCTTCCT
GTGAAGTACCTTATGCTCTATAAACGCTTATTCCCTTCTTGGGACGCTGCCACCGCTAATGTCGGCGTTGTTCGCCGCCA
CCATGAACTATCCCGCGTGGAACCATTGTCCATGCTCATCATCCCTCGCAAGAGCTCTATCCAGGATGATTTTGAGTTCT
CCCAGGATATCAGTTTCCACCACCTCCATGTAGAAAATACACTCGGCACCATCTGGAACAATAAGGGGGTGGGTTTGATG
CTTGAAAAGGTGTGCCCGCCAGGAGAGAAAGGTATTGCAAATAAGATCTTCCCCACGCACTGTAATGGCCTAGTGTGCAT
CGCAACCAACAAGGACCAGATATTCATGTGCAACCCAGCCACCCAGGAGCTCGTGGCATTGCCGCGCAGCACACCAGATG
TTCGCGACATCAAGGAGCCATCGGCAGCTCTTGGCTTTGATGTGTCACGCAACCAGTATGTTGTGGCCAGGTACTTCTAC
AAGTACTTTGAACATAATACTTCTAGTGGAGTTCTCAGTTACGAGATCGGGCATGAAGTCTTCACACTCGGTGGGGACTC
CTGGATGCGTACCGATGAACTACCAGATGCAATTGGCCACACACGACCAGTCTTCACAC-GGGGGCCTTCTACTGGGGGA
CTTATGCACCCCATGATCCCCAGGAGAGTGTGCTGGTGCGATATAGCCTAAGCAATAGGAGGTTTGATGTGGTCCCAAGC
CCACCTCGCTTCACGCACCGCTGTGAAGTCGACAATCTAGCAGACCTGGACAACAAGTTGTGCTATGTCAACAACAACGC
AGAGACAAACTTTATTGTGTGGCAGCTAGACGATGATGGGACAAGACAACCCCAATGGTCACCGCGATGTAGCATTAAAC
CATTGAATGAAGACCTCGGTGTTGAATCCTTCTTCCCAGTTTGGGCGGGTTGGGGTGGAATTATAGTTTTTGTGGACTAT
GAAAAGTTGTACTGGTGCCATGAGAGGAGTGGATATATGAAGGAATTGGTGGACCTTGTAGAGGAAGTGGATTTTGAGCG
ACAAAGGTTACACTGTGATGGTGACTTCTACCGAAGCCATATTGTTCCCTACATGGAGAGTCTCATCTCCATTAAGATGT
GTAACTACTAAAGTTGATTTTAGAGATGTGGTGCATGCAGTTCTCCTAAATTCATCTCTTTTTCATTCATAGTTAAGTTC
ATGTAATAATGTGGTGCTACTAGGTTTTTGCCCCGTAGTTCTTGCTCGAGATTGAATGGGGACAGCGGGTTTCGTAGTTG
TGCATTAATCTTGTTAGTATCTTTTGCATTCCCCTGCTTTCATAAGAACATGTATTATCAATAC-AAAAAAATCGAAAGG
GCCTAGCAA--GGTTTAAAAAGCTCACAAATGTACTATGTTTCTATCTAGAACAAGGTTTTAAATAGCGCGCTAAGCTTC
TTAGAAGCGGGCCTCTTTTAAATGTTATAGCGTGCTAT------------------------------------------
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>chr1D_2819
AATGGTATCACTA-------------------------------------------------------------------
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-------------------------------CAAAAAAACACTTCCGTGATGATACGTGTTTGTCACAGTAGGTCATGTT
TTCTGTCATGCATGTACATCCGTGATGATTCTATGACAGAATCAAGATAGTCATACCTGTGCTGTCGTAGAAGTGTTCCA
TGAAAATACTCAAATTATCATCACGGAAG-TGTCCACTTCCATGTTGATAAATGGCGCATCATGGAAGTGTTTTCGTCAA
GGGTAACCGACACGTGGCATCCACCGTAGCGGGTCACTGTTAAGCTATCTGGACTGGTTTTGGATTCGATAACCCATTAA
CAGCAATGACCAATGGCGATTTTCCACGTGTAAAATTCTCATTGGCCGAAAGAACCACGTGTCAACTCCGCATTGGGACA
GATGTCATCCAGCGAATGGACGGGACGCGCCTATGATACGTCGACATGTGGCTCGTCCTAACAGTGGCCCATTCAGGTCA
AAAGGTCGGCCCGTTTGACTTGGTCAAAAGGAAGCGGGCCGGCCCATGGAAAGCTTGTTAACGGCCTGTTCGCATATAGC
CCATTTACAGCCCGCTAACTCACGACCTGTTATGGCCTATCCGAATTAGGCCCAGTAGCGTCATCTGGGCCGTCCAATAT
GATTCCAACCCATTGTAACTTCTGGCCTATGTATGGCCCATGACGTCTTTTGGCC-
>chr5D_2824
TATATC--------------------------------------------------------------------------
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------------------------ACTAC--AAAAAAACCACTTCCGTGATGATACATGTTTGTCATAGTAGGTCACATT
TTCTGTCATGCATGTACATCCATGACGATTTTATGACAGAATCAAGATAGTCATACCTGTGCTGTCGTACAAATGTTCCA
TGACATTAGCAAAATTATCATCACGGAAG-TGTCCACTTCCATGACGATAAATGGTGCGTCATGGAAGTGCTTTCGTCAA
GGGTAACCGACACATGGCATCCACCATAATGGGTTGCCGTTAAGCTATCGTGTCTGATTTTGGATCCGATAACCCGTTAA
CAGCCCAGACCAATGGGCATTTTCCACGTGTAAAATTCACAATGGCCAGAGGAACCACGTGTCGGCTCACCGTTGGGACA
GATGTCATCCACTCATTGGACCGGAGGCGCCTATGATACGTTGACACGTGGCATGGCCCAATAGAGGCCCATTTTGGTGA
AAAGGCCAGCCCATTTGACTTGGTCAAAAGGTAGCGGGCCGACCCATGGAAAGCCTGTTAACGGCCTGCTCGCATATAGC
CCATTTACAGT-CGCTAACTCACGGCCCGTTATGGCCTATCCGAATTAGGCCCAGTAGCGTCATCTGGGCCATCCAATAT
GATTCCAGCCTATTGTAACTTCCGGCCCATGTATGGCCCATGACGTCTTTCGGCC-
>chr4D_2824
TATGAC--------------------------------------------------------------------------
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------------------------ACTAC--AAAAAAATCACTTCTGTGATGATACATGTTTGTCACAGTAGGTCACGTT
TTCTGTCATGCATGTACATCCATGACGATTTTATGACAGAATCAAGATAGTCATACCTGTGCTATCGTACAAGTGTTCCA
TGACATTACCAAAATTATCATCACGGAAG-TGTCCACTTCCATGACGATAAATGCCGCGTCATGGAAGTGCTTTCGTCAA
GGGTGACCGACACGTGGCATCCACCATAACGGGTCACTGTTAAGCTATCGGGTCCAGTTTTGGATCCGATAACCCGCTAA
CAACCAGGACCAATGCCGATTTTCCACGTGTAAAATTCTCATTGGCCGACGGAACCACGTGTCAGCTCCGCGTTGGGACA
GATGTCATCCACTCATTGGACAGGAGGCACCTATGATACGTCGACACGTGGCGCGGCCCAACAGAGGCCCATTCCGGTGA
AAAGGCCGGTCCGTTTGACTTGGTCAAAAGGTAACGGGCTGGCCCACGGAAATCCTATTAACGGCCTATTCGTATATAGC
CCATTTACGGCCCACTAACTCACGGCCCGTTACGGCCTATCGGAATTAAGCCCAGTAGCTTCATCTGGGCCGTCCAATAT
GATTCCAGCCCGTTGTAACTTCCGGCCCATGTATGGCCCATGATGTCTTTCGGCC-
>chr2D_2826
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---------------------TACACTACAAAAAAAATACACTTCCGTGATGTTACGTGTTTGTCACAGTAGGTCACGTT
TTCTGTCATGCATGTACATCCATGACGATTTTATGACAGAATCAAGATAGTCATACCTGTGCTGTCGTAGAAGTGTTCCA
TGACATTACCAAAATTATCATCACGGAAG-TGTCCACTTCCATGACGATAAATGGCGCGTCATGGAAGTGTTTTCGTCAA
GGGTAACCGACACGTGGCATCCACCATAACGGGTCGCTGTTAAGCTATCGGGTCCGGTTTTGGATCCGATAACCCGTTAA
CAGCCCGGACCAATGAGGATTTTCCACGTGTAAAATTCTCATTGGCCAGAGGAAACACGTGTTGGCTCACCGTTGGGACA
GATGTCATCCATTCATTGGACAGGAGGTGCCTATGATACGTCGACATGTGGCACGACCCAACAGAGGCCCATTTCGGTGA
AAAGGCCGGCCCATTTGACTTGGTCAAAAGGTAAAGGGTCGGCCCACGGAAAGCCTGTTAACGGCCTATTCGTATATAGC
CCATTTACAGCCCGCTAACTCACGGCCCGTTACGACCTATCAGAATTAAGCCCAGTAGCTTCATCTGGGCCATCCAATAT
GATTCCAGCCCATTGTAACTTCCAGCCCATGTATGGCCCATGATGTCTTTCGGCC-
>chrUn_2828
--------CACTA-------------------------------------------------------------------
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-------------------------------CAAAAAAATACTTCCGTGATAATACGTGTTTGTCACAGTAGGTCATGTT
TTCTGTCATGCATGTACATCCATAACGATCTTATGACAAAATCAAGATAGTCATACCTGTGTTATCGTAGAAGTGTTCCA
TGACAATACTGAAATTATCATCGCGGAAG-TGTCCATTTTCATGATGATAAATGTCGCCTCATGGAAGTGTTTTCATTAA
CGGTAACCGACACATGGCATCCACCGTAACAGGTCGCCATTAAACTATCGGGTCTGGTTTTCAATCCGATAACCCGTTAA
CAGCAACTACCAATTGTGATTTTTCATGTGTAAAATTCTCATTGGTCGAAGGAAACACGTGTCAGCTCCTTGTTGGGACA
GATGTCATCCAGCGAATGGACGAGACGAGCCTATGATACGTCGACACGTTGCTCAGCCCAATAGTGGCCCATTTAGGTTA
AACGGATGGCCCACTTGACTTGGTCAAAAGGTAGCGGGCCGGCCCACGGAAAGCCTAATAATGGTCTAGTTGCATATAAC
CCATTTACAGCCCGCTAACTCACAACGCGTTATGGCCTATCCAAATTTGGCCCAGCAGCGTCATCTGGGCCGTCCAATAT
GCTTCCAGCCCGTTGTGACTTCCGGCCCATGTATGGCCCATGACGTCTTTCGGCC-
>chr6D_2828
CACTAC--------------------------------------------------------------------------
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---------------------------------AAAAAACACTTCCGTGATGATACATGTTTGTCACAGTAGGTCACATT
CTCTGTCATGCATGTACATCCATGAACATTTTATGACAGAATCAAGATAGTCATACTTGTGTTGTCGTAGAAGTGTTCCA
TGACAATACTAAAATTATCATCACGGAAG-TGACCACTTCCATGACGATAAATGGTGTGTCATGGAAGTGTTTTCGTTAA
GGGCAACCGACACGTGGCATCCACCGTAACGGATCGTTGTTAAGCTATCGGGTCTAGTTTTGGATCCGATAACCCGTTAA
CAACAATGACCAATGGCGATTTTTCACGTGTAAAATTCTCATTGGTCGAAAGAACCACATGTCAACTTCGCGTTGGGACA
CATGTCATCCAGCAAATGGACAGGACACGCCTACAATACGTCAACACATGGCTCGGCCCAACAGTGGCCCATTCAGGTCA
AAAGGCTGGCCCATTTGACTTGGTGAAAAGATAGCGGGTCGGCCCATGGAAACCCTGTTAACGGCTTGTTTGCATATAGC
CCATTTAGAGCCTGCTAACTCACGGCCCATTACGGCCTATCTGAATTAGATCCGGTAGCGTCATCTCGGCCATCCAATAT
GATTCCCGCCCATTGTAACTTCTGGCCCATGTATGGCCCATGACGTCTTTCGGCC-
>chr4B_2828
--------CACTA-------------------------------------------------------------------
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-------------------------------CAAAAAAATACTTCCGTGATAATACGTGTTTGTCACAGTAGGTCATGTT
TTCTGTCATGCATGTACATCCATAACGATCTTATGACAAAATCAAGATAGTCATACCTGTGTTATCGTAGAAGTGTTCCA
TGACAATACTGAAATTATCATCGCGGAAG-TGTCCATTTTCATGATGATAAATGTCGCCTCATGGAAGTGTTTTCATTAA
CGGTAACCGACACATGGCATCCACCGTAACAGGTCGCCATTAAACTATCGGGTCTGGTTTTCAATCCGATAACCCGTTAA
CAGCAACTACCAATTGTGATTTTTCATGTGTAAAATTCTCATTGGTCGAAGGAAACACGTGTCAGCTCCTTGTTGGGACA
GATGTCATCCAGCGAATGGACGAGACGAGCCTATGATACGTCGACACGTTGCTCAGCCCAATAGTGGCCCATTTAGGTTA
AACGGATGGCCCACTTGACTTGGTCAAAAGGTAGCGGGCCGGCCCACGGAAAGCCTAATAATGGTCTAGTTGCATATAAC
CCATTTACAGCCCGCTAACTCACAACGCGTTATGGCCTATCCAAATTTGGCCCAGCAGCGTCATCTGGGCCGTCCAATAT
GCTTCCAGCCCGTTGTGACTTCCGGCCCATGTATGGCCCATGACGTCTTTCGGCC-
>chr5B_2832
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---------------------------AC--TAAAAAAACAATTCTGTGATGATACGTGTTTGTCACAGTAGGTCATGTT
TTCTGTCATGCATGTACATCCATGACGATATTATGATATAATCAAGATAGTCATACATGTGCTGTCGTAGAAGTGTTCCA
TGACAATACTAAAATTATCATCACGGAAG-TGTCCACTTCCATGACGATAAATGCCGTGTCATGGAAGTGTTTTCGTCAA
CGGTAACCGACACGTGGCATCCACCATAACGGGGCTCCATTAAGCTACCGGGTCCGGTTTTGGATCTGATAACCTGTTAA
CAGGAACGACATATGGCGATTTTCCACGTGTAAAATTCTCATTGATCGAAGGAAACACGTGTTAGCTCCTGGTTGGGACA
GATGTCATCCAGCGAATGGACGGGATGAGCCTATGATACGTTGACACATTGCTCGGCCCAACAGCGGCCCATTTAGGTTA
AAAGATCGGCCCATTTGACTTGGTCAAAAGGTAGTGGGTCGGCCCACTGAAAGCCTGTTCATGACCTGGTCGCATATAGC
CCATTTACAGCCCGCTAACTCATGACCCGTTATGGCCTATCCGAATTAGGCCCAACAACATCATGTGGGCTGTCCGATAT
GATTCCAACCCATTGTGACTTCCGGCCCATGTATGGCCCATGACGTCTTTCAGCC-
>chr5A_2834
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-------------------------------CAAAAAAACACTTCTGTGATGATACGTGTTTGTCACAGTAGTTCACGTT
TTCTGTCATGCATGTACATCCATGACAATTTTATGACAGAATCAAGATAGTCATACATGTGTTGTCGTAGAAGTGTTCCA
TGACAATACTGAAATTATCATCACGAAAG-TGTCCACTTCCGTGATGATAAATGTCGCATCATGGAAGTGTTTTCGTTAA
GGGTAACCGACATATGACATCCACCGTAACGGGTTGTCGTTGAGTTATCGGGTCAGGTTTTGGATCCGATAACCCATTAA
CAACAACGACCAGTGGCGATTTTCCACGTGTAAAATTCTCATTGGCCGAAGGAAACACGTGCCAGCTTCTCATTGGGATA
GATGTCATCTAGTGAATGGACAGGACAAGTCTATGATACGTCAACACGTTGCTCGGCCCAACATCGACCCATTTAGGTTA
AAAGGCCAGACTGTTTGACTTGGTCAAAAGGTAGCGGGCGG--CCACAGAAAACCCGTTAACGGCCTAGTCTCATATAGC
CCATTTACAGCCCGCTAACTCACGACCCGTTATGGCCTATCCGAATTAGGCCCAGCAGTATCATGTGGGCCGTCTAATAT
GATTCCAGCCTGTTGTAACTTCCGGCCCATGTATGGCCCATAACGTCTTTCG----
>SNPs
----------------S---S----------------S---------S--S----------------------------S
----------------------------------------------S-S-----S---S----------S-S--------
---------S----------------------------------------------------------------------
---SSSSS-SSS--------------S--------------------------------------S-----------S--
-------------------------S-----SS-------------------------------------------S--S
--------------S--------S--------------------------S--S--------S-----------------
----------------------------------------------S-------------S---------S-------SS
-S------------S--------------------------------------------S-----------------SS-
---------S---S-------------S--S------------------------------S--S---S--S--------
------S-------S--S--S--S-S--S-----------S------S--S------S--------------S-------
-------S-----------------------S------------------S----S---S------------S-------
------------------------------S-------------S-------------------SSS-------S-S---
-------------------S------S-------------------------------S-SS------------------
--SS------------S------------------S------S--S--S----------------S--------------
-------------S----------------S-----------------------------S---------SS--S-----
--S--------------------------------------------------------S--------------------
--SS---S-----------------------------------------------S------------------------
--------------------S---S-------------S-----S--------SS--S--------S-S-----------
--S---S-----S-------------------------------------------------------------------
-------------------------------S--------------------S-------------------S-------
-----------------------S---S--------------------S-------S-----------------------
------------------------S--------------------------S--------S--S---S------------
----------------------S----S-------------------S----S---------------------------
S-------------------S-----------------------------------------S-----S-----S-----
S-------------------S---------S-----SS---------------------S---------S----------
-------------------S----------------------S---------------------S--------S------
--------------S--S--S------S-S---S---------------------------------------S------
---S--------S--------------S--S-------------------------------------------------
-------S--------S----S----------------S-------S---------------------------------
--------------------S------------S------------------------S---------------------
--------------S--S----S---------------------------------------------------------
-S-------S---------------------------S----S-------------------------------------
-------------------------------------S----S-SSS--------------------------S------
-S----------------------------------------------------------S---S---S-----S-----
SS---S--SSS--------------------S-----S------------------S-----------S-----------
----S--S----------------------S---S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS-----------------------------------------------------------
---------------------------------------------------------------------S----------
------------------------S---SS-----------------------S----------S------------S--
S-S-----------------------S---S-----------------S----S--------------------------
S------------------------------S------------------------------S-----------------
-----S----------------------S-----------S---------------------------------------
---------------------S---------------S----------------------------------------S-
-S-----------------------------------------------------------------------S------
---------------------S-------S-------------------------S
>forward_559
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------TGCTTGTGGTCGTACCTAGC-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------
>reverse_1443
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--GTGAGCTATCTCGCGTGGAA----------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------
>forward_1284
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------ACACACCACCAGATCA
CAGG----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------
>reverse_2862
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------CCACCAAAACCACTTAGCG
C-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------
