>input_sequence_49869
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-----------------------------------------ATGGAAGCGCTCGCTGTCGCTGGTGGCAAGCCGCTGTCG
GGGGCGCGGGCGCGGCGGATCGCCAGGAGCCGGGAGGAGATGCTGGGCCTCCTTGCTGACTTCGACGGCGGCGA---CGG
CTCCGACCGCGAGCTCTCCTTCTCCGACCTCGTCGACGCCGTCAGGCCGCCGCCCAACGCCGGCCACGCCTCGGTGT---
CGCTGCCGGCACCAGTCGGGGTCGAAGCAGAGGCGGCCGAGCAGAGGCGGGAGGATGCCCCGCCGTCCAAGAAGCAGCAG
CA------GGCGGCGGGGAAGGAGAAGAGGAGGCTGCGGAGGCGGCCGAGCGACAACAGGGGCAGCTGCGGAGGAGGCGC
GGACGGCAACGGCGTGCTGCTCAACTTCTACGTTCCGGGGCTGCTCACCCGGAGCATGACGGCGCCGCGCCCCGGCCCCG
GCCGGGGGCTGATGCCGGCCGCGGGGACCCGGCAGAGCGCGCCGCCGACGGTTGCTGCCGGCAAAACCAGGTGAGGTTTT
TCTGTCCTCAACTGGCAGTGCATGAGATCCTTGTGCTTCTCGAGATTCGCACTATGGATA-------------CAATGAT
TAACATCTCGATTCACTACATAATTAGCCGTGCAGTCAAACAGTCAGTTAACCCCACCCCCGAAAAAGAGTATTACCAGT
TGC-----------TAATCGTGTCCAGTTATTTTCTACGAGTAGTCGTGAGTGTCGTAGCAGCTGTAGAGTTGCTTTTGG
CTAGCT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------AGTGAAGTCTG--------ACTGGT
ATGGCTGCACTGAATATCTGCAGCTGCATCG---GATTTTTCTTGTGTTCACATGATAATAATA--------AACACATT
TCGCAACCATTATAAATGCTCATT-AGTCATGTCATTATTTCCAACCCCACAACCACAAAAAAGCAAATTGCGTGGCCAC
GAAAATTCTTTCTCCAACAAACGGGTTTTTTTAGGGTAACAAACGGGCTTTATAATAAAATAAAAGGACCAAACACTAAT
CACTACACTTTTGGTCA-AAAAAAAACAATAATCAATATACTACCACTGCAGTAGTACTG------TATGCATTTTTCTC
AGGATCTCGG-TTCTTTGACAATTCCAAGCCCCTCAGTCCTTTAGACCACATGATTAAAGCTTTTGACTTTGGTAGG---
-------------AAATGGAACAACTCATGAGCAGGAATATGAAA--GGAACAGTGAACCCGACAATGTGACCATAGTGC
ACAGGAAAAACACAGATTACAGATATCTATATGTTGTGAGTTAACCTGACAATATGACCATGGTACACAGAAATACGCAG
ATTACAGATATTTATATATTGTGAATTAACCTGACAATGTGTCCATAGTGCTCCCAAGCAAAACTGCGTTTTACACCAAA
TGT--------TCATTTCAGATGACGATGGGCCATGAGTGTACAAACCTAACTTACCTATGTGCAAATGTTTCAGGATGC
AGGCGTCGCTGGACATCGGCTGCTGGCCGGCGCTGTGGGGCAGAGGCCGCGACCACCACC---GTAACAAGCCAGTCTGA
--------------------------------------------------------------------------------
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---------------
>chr1D_1_TraesCS1D01G309100
TTACCTAGTGGGAGCGTAACATTCTACTCCACCTTAGAAGCCTTCGTTTCATTCCAGAAGAAATGGGGAGAGGAGCCTGA
TGACGCCGACGAGGCACGTGAAAGCGAGCGGCGGAGAATCTGGGACATTTGCGGTCCAAGGAACGGGAGGTATA------
-----------CTCCTCCTCCGTCGGTAACGGTGCGTGCTTGGTCCGACGACGAGTCACGGCTGCCGTATTCTTTC----
-ATTGAAAAC----CCTGTGATGCGTGCGTCCACTCTTTCATTGAACCCCCTTAAATCCGGCGGGTGATATGTCGTCATC
GGCGCGGTGCTCCGACGATCCCCGTGTCCGCGAAACCGCGTGTACGTGCAGCAGCGCGAGAGACCGGACTCCCGTACGCT
CCGGCGGCGACCCCCCCGTCCCGACGGCGACCACGGTGGTTGCGCTCGACGTACGGGGCAGTTTTTACAGTT-AAGACTT
GAAACTCACCACTCACCTCAGCCAAATCCATGCAAGTAAACTGGAATTTGAC---GTGAAATCCAGCCACACGATGCGTG
ATTCTTTTACGTGCATCCCATGAGACTCA-------------------------------CCTCTGCCACAGAATCTT--
-CTCTTACTTGCAAGAAAAGAAGATGAGAAGAAAAAATAGAGTGACCGCAACTCAGCAGAAAAGAAGCCTCGCCGTCTGC
AGCTGAAGTGGAC----------ACGTCTTGAAAAGAAATCCTGGGCTTCTAGATCGACCGACCGGGCGCGCTCTCGTCT
TGTCCGTCGGCCTTGACCCGGACTGAGCTGCAGATAAAGAGGAGGAGCTTCACAAAGGACGACCCGACGGAAGAAAACAG
AGCCAAAAGCGGCACCGAGCAACCGGTCGAGCAAAGCGCACCGCGTCACATCATCTCGAGCGCGCTCTCTAGCTAG--CT
ACATAAGCAGCGCGGCGGCACTTCCTTGTCCAGGAGGA-----GAGAGCGCCGATCGCCGGACCACAGGCGGCCACACGA
CACCAGCACGAGCGAGCCACGGCGCGGTCGACCGAGGCGCGATGGAAGCGCTCGCTGTCGCTGGTGGCAAGCCGCTGTCG
GGGGCGCGGGCGCGGCGGATCGCCAGGAGCCGGGAGGAGATGCTGGGCCTCCTTGCTGACTTCGACGGCGGCGA---CGG
CTCCGACCGCGAGCTCTCCTTCTCCGACCTCGTCGACGCCGTCAGGCCGCCGCCCAACGCCGGCCACGCCTCGGTGT---
CGCTGCCGGCACCAGTCGGGGTCGAAGCAGAGGCGGCCGAGCAGAGGCGGGAGGATGCCCCGCCGTCCAAGAAGCAGCAG
CA------GGCGGCGGGGAAGGAGAAGAGGAGGCTGCGGAGGCGGCCGAGCGACAACAGGGGCAGCTGCGGAGGAGGCGC
GGACGGCAACGGCGTGCTGCTCAACTTCTACGTTCCGGGGCTGCTCACCCGGAGCATGACGGCGCCGCGCCCCGGCCCCG
GCCGGGGGCTGATGCCGGCCGCGGGGACCCGGCAGAGCGCGCCGCCGACGGTTGCTGCCGGCAAAACCAGGTGAGGTTTT
TCTGTCCTCAACTGGCAGTGCATGAGATCCTTGTGCTTCTCGAGATTCGCACTATGGATA-------------CAATGAT
TAACATCTCGATTCACTACATAATTAGCCGTGCAGTCAAACAGTCAGTTAACCCCACCCCCGAAAAAGAGTATTACCAGT
TGC-----------TAATCGTGTCCAGTTATTTTCTACGAGTAGTCGTGAGTGTCGTAGCAGCTGTAGAGTTGCTTTTGG
CTAGCT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------AGTGAAGTCTG--------ACTGGT
ATGGCTGCACTGAATATCTGCAGCTGCATCG---GATTTTTCTTGTGTTCACATGATAATAATA--------AACACATT
TCGCAACCATTATAAATGCTCATT-AGTCATGTCATTATTTCCAACCCCACAACCACAAAAAAGCAAATTGCGTGGCCAC
GAAAATTCTTTCTCCAACAAACGGGTTTTTTTAGGGTAACAAACGGGCTTTATAATAAAATAAAAGGACCAAACACTAAT
CACTACACTTTTGGTCA-AAAAAAAACAATAATCAATATACTACCACTGCAGTAGTACTG------TATGCATTTTTCTC
AGGATCTCGG-TTCTTTGACAATTCCAAGCCCCTCAGTCCTTTAGACCACATGATTAAAGCTTTTGACTTTGGTAGG---
-------------AAATGGAACAACTCATGAGCAGGAATATGAAA--GGAACAGTGAACCCGACAATGTGACCATAGTGC
ACAGGAAAAACACAGATTACAGATATCTATATGTTGTGAGTTAACCTGACAATATGACCATGGTACACAGAAATACGCAG
ATTACAGATATTTATATATTGTGAATTAACCTGACAATGTGTCCATAGTGCTCCCAAGCAAAACTGCGTTTTACACCAAA
TGT--------TCATTTCAGATGACGATGGGCCATGAGTGTACAAACCTAACTTACCTATGTGCAAATGTTTCAGGATGC
AGGCGTCGCTGGACATCGGCTGCTGGCCGGCGCTGTGGGGCAGAGGCCGCGACCACCACC---GTAACAAGCCAGTCTGA
GAGTCTTCTTCTTCTTCCATGCACATACAGCCGGTGTAGTGGTACCACTACTTGTAGCCTGAGACTTGTTGTGCAGCTAA
TCCGAGCCTTCTTTTTTCTGCTCACACCTGTAAATTATGCT---CTGTTTTTGTAAACGTGGTTTCTGAGTTGGTGTCTT
TTCTTAAACTGCGTTGGTGCTGCC---------GTGTGA----------TCTTTCTCGAAAGGCAGGCAGCCACGGACGG
GCTTGTCAGCTGTAGGCTTACTTTGGCACTTTGTGACTTTGCGAGATCCGGCGGTGC-----------------------
------------------CTCACGTTGCCCGTGGCGTGCCGCTGAAGCGATGCATGTGC--AGCTCACACAAAAAGGCAG
AACCAACCGAAATCTCGGCGGTGCGTACGTACGTGACCTCGCTTTCAGTTTCAGTAGGCGATAGATAAATCGAGGCTGGG
TGGCGAGTGTTGAGTGGTG--------ACACAAGACATGAAAACGATTGCTGTGATCGAGCTGAATCTAGTACG------
--------------------------------------------------GTTGTAGCTTGGCTGGTTTTCTGGCGCGCG
GCGGAGGCACGTCTGCGTCCAA-CCAGATACGATACCACTGCCACTGCCAGTACCGGCCCGCTGAAATCAAGACAAGAGA
CAACGAGATACTGCTGAAATCTCAAGTCAAGTGGCAGATGGTGTCAAACGATGCCGACTGCACAT-------CATGGCAC
GTAACACATCC-----------------------------------ACGGA-TGCATCCAGTCCACTGGTAAAGCCAATA
TTGCCCTCGAGGTGGTGGAGCACTTGACAACGACAATCATCACAAACTA-------TGTGAAGAAACAAT----------
----------GAGCCAGCCATATTGCAAACCTGCTACTAAGACCTCTAGTTCACCGTAACGCACGCGC---------AAC
AAACTGACTACCGAATTAACCCGACACAGACAAACTAC---ACAAGCAACAAGTCCACGACACCCCGAAGAT---GGGGG
CCAGCAAGCGCGAAACACACACACACACACTACTAGTAGCAGCAACATGGAGCCATCAGAAATAGCCCCCGACTGAGCAC
GCACGCGATCACAGA
>chr1A_24
-----------------------CTACTCCACCTTAGAAGCCTTCGTTTCGTTCCAGAAGAAATGGGGAGAGGAGCCTGT
TGACGCCGACGGGGCACGAGAAAGCGAGGGGCGGCGAACCTGGGACCTTTTCTTTCGAAGGAATGGGAGAGGTATGGTAT
ACTTAATACTCCTCCTCCCCCGTCGGTAACGGTACGTGCTTGGTCCGACGATGCCTCGCGGCTGCCGTTTTCTTCCCTTT
AATTGAAAAC----CCTGTGATGCGTGCGTCGACTCTTTCATTGAATCCCCTTAAATCCGGCGGGTGATACGTCGTCATC
GTCGCGGCGCTCCGACGATCCCCGTGTCCGCGAAACCGCGTGTACGTGCAGCAGCGCGAGAGGCCGGACTCCCGTACGCT
CCGG---------------CCCGGCGGCGACCACGGTGGTTGCGCTCGACGTACGGGGCGGTTCTTACAGTT-A------
-------------------------------------------GAATTTGAC---GTGGAATCCAGCCACACGATGCGTG
ATTCTTTTACGTGCGCCGCATGAGATTCTGAATG----TGCCTTGAACTCATGCGTGCATACTTTGCCACAGAATATTGT
CCTCTTACTTGCAAGAAAAGAAAATGAGAAAGAAGGGTGACGGCCACTG-----AGCAGAAAAGAAGGCTCGCCGTCTGC
AGCTGAAGTGGACGGAAAAGGACGCGTCTTGAAAAGAAATCCTGGGCTTCTAGATCGACCGACCGGGCGCG--CTCGT--
-----------CTTGACCTGGACTGAGGTGCAGATAAAGAGGAGAAGCTTCAGAAAGGACGACCC-AAGGAAGAAAACTA
AGCCAAAAGCGGCACCGAGCAACAAACCGATCG-AGCACACCACATCACATCATCTCGCGTTCTCTAGCTAGCTACACCT
ACATAAGCAGCGCGGCGGCACACCCTTGCCCTGGAGGAGAGAGGAGAGCGCCGATCGTCGGACCACGGGCAGCCACACGA
GACTA-------------------------------GCACGATGGAGGCGCTCGCTCCTGCCGGGGGCAAGCCGCTGTCG
GGGCCGCGGGCGCGGCGGATCGCCCGGAGCCGGGAGGAGATGCTGGGCCTCCTCGCCGACTTCGACGGCGGCGATGGCGG
CTCCGACCGCGAGCTCTCCTTCTCCGACCTCGTCGACGCCGTCAGGCCGCCGCCCAACGCCGGCCACGCCTCTGCGTCGC
CGCCGCCGGCACCAGTAGGGGTCGAAGCGGCGGCGGCCGAGCAGAGGCCGGAGGAGGCCGTGGCACCGAAGCAGAAGCAG
GCGGCGGCGGTGGCGGGAAAGGAGAGGAGGAGGCTGCGGAGGCGGCAGAGCGACAACAGGGGCAGCTGCGGGGGAGGCGC
GGACGGCAACGGCGTGCTGCTCAACTTCTACGTGCCGGGGCTGCTCACCCGGAGCATGACGGCGCCGCGCCCCG------
GCCGGGGCGTGATGCCGGCCGCGGGGGCACGGCAGACCGCGCCGCCGACGGTTGCCGCCGGCAAAACCAGGTGAGC-TTT
TCTGTTCGCAACCGCCAGA---------------GCTTCTCGAAATTCGCGCCATGGATGGATG--CAAACCGCAATGAT
TAACCTCTCCGTTCAAACAGTAATTAGCCATGCAGTCAAATAGTCAATGAATCTTCCAATACTAGTACTATCATGTAGTA
GCACTGATTGCTAATAATCATGTCGAAATCTTTTC------TACTCCCTCCATTCTTAAATATAAGTCTTTTGAGACATT
TTAAATGAACTACAACATACGAATATATATAGATATATTTTAGAGGGTAGATTCACTCATTTTATTGTGTATGTAGTTAT
TTGTTGGAATCTCAAAGAAACTTATATTTGAGAACAAAGAGAGTAGTAACGAGAGTTATAGTACAGTGCTCCCTCCATGT
CAAAATAAATGTCTCAACGTTTTATTAATTTTCATTTAAAATTATATTAAAGTTGAGACACTTATTTTGATACAGCGAGA
GTAGTAGGTAGCAGGTGAAGTGCTCGTTCAGTCGCTGTAGACATGGCCGAGCACCAGTGAAGTCTCTGACTAGTACTACT
ATGGTTGCACTGAATATGTCCAACTGCATTGCTAGATTTTTCTTCTGTTTATAATACGGAGTACATGATAGTAACACATC
TCGCAACCATTATAAATGCTCATTTAGTCACGTCATTGTTTCCAACCCCGCAAC-----AAAACGAG--TGCGTGGCCGC
GAAAACCCTTTCTCCAACAAACGGGTTTTA-------------------------------AAAAGGACCAATCACCAAT
CAATCTGCG----------------------------------------------------------------TTCTCTC
AGGATCTCACTTCCTTTGACAAT-----------TC-TCCTTTAGACCACATGATTAAACCTTTTGACTTTGGTAGCACT
CGACTCAGAGAAAAATTGGAACAACTCATGTTCAGCGATATGAAAATGGAACGGCGACGACGACAATCCGCCCGAAGTTT
GTTAAAAACAAGGGGGGGGGGAACACTGACCAAAGTG------------------------------CAGAAATACGCAA
ATACTGTTCAATACGTTCTTTGTTTCTTTCTTTCTTTCCGAGGCTACTACATGTTCAATAGTATCGACCACCGCTAATCT
GTTTCGGAC---------------------------------------------------GTTCAAATGTTTCAGGATGC
AGGCGTCGCTGGACATCGGCTGCTGGCCGGCGCTGTGGGGCAGAGGCCGCGACCACCACC---GGAACAAGCCGGTCTGA
GAGTCTTCTA-TTCTTCCATGCACATACAGCC----------------TACTCGTAGTCTGAACCTTTTTGTGCAGCTAA
TGCGAGCCTTTTTCCT-CTGCTCACGCATGTAAATTATTATCTCCTGTTTTTGTAAACGTGGTTTGTGTTGGGGCCTTGT
---TTAAACTGCGTTTGGTGCTGCTGTAGCGCTGTGTGA----------TCTTTCTCGAAAGGCAGGCAGCCACGGATGG
ACATGTCAACTGTAGGCTTACTTTGTCACTTTGTGACTTTGCGAGATCCGGCGGTGCTGTTGAGTGAGAGCACGCGATGC
TCCTTTTCGACAGGCCGCCTCACGTTCCCCGTGGCGTGCCGCTGAAGCGATGCATGTGCAAAGCTCGCAC-AAAAAGCAG
AACCAACCGAAATCTCGGCGGTGCG----TACGTGACCTCGCTTTCAGTTTCAGTAGGCGATAGATAAACGGAGGCTGGG
TGG-------TGATGCTGGTGGTGAGTACACAAGACATGAAAACGATTGCTGTGATTCAGCTGACTGAATCTACCACTAC
CAGCTAGCAGCCTAGTACGGTAGTAGTATAAGGTTCGGGGACGAGCCGTCCTTGTAGCT------------TGGCGCCCG
GCGGAGGCACGTCTGCGTCCAAACCAGATACGATATCACTGCCG------GTACCGGCCCGCTGAAGTCAAGGCCAGAGA
CAACGAGATAGA----------------------CAGGCAGTGTCAAACGATGCCGACTGCACAT-------CATGGCAC
GTAACACATCGAGGCGGCGACGTGGCAGGAAAAAGAAGAAACTGCGACCGA-TGCATCCAGTCCAC--------------
-TGCCCTCGAGGTGGTGGAGTACTTGACAATGACAATCATCACAAACTA-------TGTGAAGAAACAGCAAACATTGCA
TTAGGATTCAGAGCCAGACATATTACAAACCTGCTACTAAGATCTCAAGTTCAC-------------C---------AAC
AAACTGACTACCGGATTAACCCGACACAGACAAACTAC---ACAAGCAACAAGTCCACGACACCCCGAAGACGACGGGGG
CCAGCAAGCGCGAAACACACACAC---------TACTAGTAGCAACACGGAGCCATCAGAAATAGCCCC-----------
---------------
>chr1B_32
CCTTG-------------------------------GAATCCTTCGTTTCATTCCAGAAGAAACGAGGAGAGGAGCCGGG
CCACGCTGACGAGGCACGAGAAAGCGAGGAGCGGCGAATCTGGGACA-TTGCGGTCGAAGGAATGGGAGGTAGTATGAGG
TATGCTCTC----CCTCCCCCGTCGGTAACGGTACGTGCTTGGTCCGACGACGAGTCGCGGCTGCCGTTTTCTTTC----
-ATTGAAAACAGTGCCTGTGATGCGTGCGTCGACTCTTTCATTGAATCCCCTTAAATTAGACTGGTGATACATCGGCATC
GTCGCGGTGCTCCGATGATCCCCGTGTCCGCGAAACCGCGTGTACGTGCAGCAGCGCGAGAGACCGGACTCCCGTACGCT
CCGGCGGCGACTCCCCGG-CCCGATGGCGACCACGGTGGTTGCGCTCGACGTACGCGGTGGTTTTCACAGTTAAAGACTT
GAAACTCACCACTCACCTCAGCCAAATCCATGGAAGTAAACTGGAACCTTGACGTGTAAAATCCAGCCACACCATGCGTG
ATTCTTTTACGTGCGTCGCATGAGATTCGAATGTGCCCTGCCCTGAACTCATGCGTGCATCCTCTGCCACAGAATCTTCT
CCGCTTACTTGCAAGAAAAGAAAATGAGGAGAGAAAAAA-------------------------AAGCCTCGACGCCTGC
AGCTGAAGTGGACGGAAAAGGACACGTCTTGAAAAGAAATCCTGGGCTTCTAGATCGACCGACCGGGCGTG--CTCGTCT
TGTCCGTCGGCCTTGACCGGGACTGAGCTGCAGATAAAGAGGAGGAGCTTCAGAAAGGACGACCC-ACGGAAGAAAACAG
AGCCAAAAGCGGCACCGAGCAACCGATCGAGCAAAGCACAACACACCACATCACCTCGCGCTCTCTAGCTAGCT------
ACATAAGCAGTACGGCCGCACTTCCTTGTCCAGGATCA-----GAGAGCGCCGATCGTCGGACCACGGGCGGCCACACGA
CACCAACACGAGCGAGCCACGGCGCGGTCGAGCGAGGTGCGATGGAGACGCTCGCTGTTGCCGGGGGCAAGCCGCTGTCG
TCGGCGCGGGCGCGGCGGATCGCCAGGAGCCGGGAGGAGATGCTCGGCCTTCTTGCTGATTTCGACGGCGGCGA---CGG
CTCAGACCGCGAGCTCTCCTTCTCCGACCTCGTCGACGCCGTCAGGCCGCCGCCCCACACCGGCCACGCCTCCGCGT---
CGCCGCCGGCACCAGTCGGGGTCGAAGCGGAGGCGGCCGAGCAGAGGCGGGAGGAGGCCCCGGCACCGAAGCAGAAGCAA
GCGGCGGCGGTGGCGGGAAAGGAGAGAAGGAGGCTGCGGAGACGGCAGAGCGACAACAGGGGCAGCTGCGGAGGAGGCGC
GGACGGCAACGGCGTGCTCCTCAACTTCTACGTGCCGGGGCTGCTCACCCGGAGCATCACGGCGCCGCGCCCCG------
GCCGGGGGGTGATGCCGGCCGCGGGAGCACGGCAGAGCGCGCCGCCGACGGTTGCTGCCGGCAAAACCAGGTGAGG-TTT
TCTGACCTCAACTGGCAGTGCATGAGATCTTTCTGCTTCTCGAGATTCGCACCATGGATAGTGCAACAAACTGCAACGAT
TAACATCTCGATTCACAT-ATAATTAGCCATGCAGTCAAACAGACAGTTAACCCCACCCCGGAAAAAGAGTATTACCAGT
TGC-----------TAATCATGTCGAAATATTTTC------TAGTCGAGAGAGTCATAGCAGCTGTAGGCTTTAGCTATA
GCTA-T--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------AGTGAAGTCTA--------ACTGGT
ACGTTTGCACTGAATATTTTCAACTGTATC----GAATTTTCTTGTGTTCACATGATAATAATA--------AACACATT
TCACAACCATTATAAATGCCCA-TTAGTCATGTCATTATTTCCAACCCCACAAC-----AAAAGCAAATTGCGTGGCCAC
GAAAATTCGTTCTCCAACAAACGGGTTTT--------------------------------AAAAAGACAAAACACTAAT
CACTGCACTTTTGGTCAGAAAAAAAACAATAACCAATATACTACCGCTGTAGTAGTAGTAGTAGTATATGCATTTTTCTA
AGGGTTTCAGTTTCTTTGACAATTCCAAGACCCCTC-TCCTTTAGACCACATGATTAAACCTTTTGACTTTGCTTGCTCT
TC------AGAGAAAATGGGACAACTCAGTACCTGGGATATGAAA--GGAACAGTGAACCTGACAATGTGACCATAGT--
----------------------------------------------------------------ACACATAAATACGCAG
ATTACAGATATCTATATATTGTCAATTAACCTAACAATGTGTCCATAGTGCTTGCAAGCAAAACTGCGTTTTACACGATC
AACACCAATGCTCATTTCAGATGACGATGGGCCATGACTGTACAAACCTAACCTACTTATGTCCAAATCTTTCAGGATGC
AGGCGTCGCTGGACATCGGCTGCTGGCCGGCGCTGTGGGGCAGAGGCCGCGACCACCACCACCGTAACAAGCCAGTCTGA
GAGTCTTCTTCTTCTTCCATGCACATACAGCCGGTGTAGTGGTACCACTACTTGTAGCTTGAGACTTGTTGTGCAGCTAA
TCCGAGCCTTCTTTTT-CTGCTCACACATGTAAATTATTATCTCCTGTTTTTGTGAACGTGGTTTGCGTTGGCGCCTTGT
---TTAAACTCCGTTGGTGTGGTT---------GCGTGAGTGTGATCTTTCTTTCTCGAAAGGCAGGCAGCCACGGACGG
ACATGTCAACTGTAGGCTTACTTTGTCGCTTTGTGACTTTGCGAGATCCGGCGGTGCTGTTGAGTGAGAGCACGCGATGC
TACTTTTCGACAGGCCGCCTCACGTTGCCCGTGGCGTGCCGCTGAAGCGATGCATG--CAAAGCTCGCACAAAAAGGCAG
AACCAACTGAAATCTCGGCGGTGCGTACGTACGTGACCTCGCTTTCAGTTTCAGCAGGCGATAGATAAATCGAGGCTGGG
TGG-------TGAGTGGTG--------ACACAAGACATGAAAACGATTGCTGTGATTCAGCTGACTGAATCTACTACTAC
CAGCTAGCAGCCTAGTACGGTCTT--------------------GCCGTCGTTGTAGCTTGGCTGGTTTTCTGCCT----
-------CACGACTGCGTCCAA-CCAGATACGATACCACTGCCG------ATACCGGCCCGCTGAAGTCAAGACAAGAGA
CAACGAGATAGA----------------------CAGATAGTGTCAAACGATGCCGACGGCACACGGCACAGCATGACAC
GTAGCATACCAAGGTGGCGACGTAGCAGGGACAAGGCAACTGCGGCAATATGTGCATCCAGTCCATTGGTTCAGCTAGCG
TGGCTAGTCCATCGAGGTGGCA----------------ATCACAAACTCTGTTCATTGTGAAGAAACAGCAAACGTTGCA
TTAGGATTCAGAGCCA----TATTACAAACCTGCTACTAAGATCTCAAGTCCAC-------------CGTAAGGCGCAAC
AAACTGACTACCGAATTAACCCGACACAGACCAACTACACAACCAGCAACAAGTCCACAACCCCCCGAAGAT---TGGGG
CCAGCAAGCGCGAAACACACAC-----------TACTAGTAGCGACATGGAGCCATCAGAAATAGCCCCTGACCGAGCAC
GCACACGATCAC---
>SNPs
SSSSSSSSSSSSSSSSSSSSSSS--------------------------------------------------------S
------------------S---------S-----S---------------------S------S----------------
------------------S--------------S-----------------------S----------S-----------
-------------------------------S--------------S-----------------------S---------
-S------------------------------------------------------------------------------
-----------S----S-S----------------------------------------S--------------------
--------------------------------S-----------------------------------------------
--------------S--S-------S--S---------------------------------------------------
----------------------S----------------SS-SSSS-SSSSSSS--------------------------
-----------------------------------------------------------------------SS-------
------------------S---------------------------------S------------S--------------
-------------------------S-----------S----S-S-------------S--S-S--SS-------S----
---------------------------------------------------------S--------S-------------
-----S-------------------------S--------------S-----------S--S--S---------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------S-S-----
---S------------------------S--------------------------S------S-SS-S---S--S-----
SS--------S------S-------S--------------------S---------------------------------
---------------------------------S----------------------------------------SSSSSS
--------S-----------------S-S-----------------------------------------------S---
-----------------------------S--S-------------------S---------------------------
----------------SSS----------S------------------------------S-------------------
-------------------S----S-SS-------SSSSSS------S---S---S------------SS---SSS-SSS
S--SS---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------S--------------
----S------------S-S--S---------------------------------------------------------
------------------------------------------------------SSSSS---------------------
-----------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------
----S---------------------------S------------S---S-------S-S--------------------
--------S--------------------S---SSSS----------------------S----------------S---
-------------------------------S----S-----------------------------------------SS
SSSSS---S-SSSS-SSSSSSS-S-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------
----------------------S---------S-------------------SS----------------------S-SS
SS-----------------------------------S--------------S---S-----S-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------S----------S----------SS-------------------------S--SSSS--SS-SS-
SSS----------------SS-S---------------------------------------------------------
S-S-----S----------------S------------------------------------------------------
------------------------------------------------------------------S-------------
--------------------------------------------------------------------------------
---SSSSSSS----------------------------------------------SS------S-SS-SSSSS------
-----------------------------------------------------------------------------S--
-------------------------------------------SSSSSSS----------------S-------------
----------SSSSSSSSSSSSSSSSSSSSSSSS-----S----------------------------------------
----------S-------------------------------------S---------------------SS---S-SSS
------------------------------S-------------------------------------SS----------
-----------------S------S-----------------S---S-------SSSSSSSSSSSSS-------------
--------------------------------------------------------------------------------
------------------------SSSSSSSSS--S---S-----------------------------S---S------
----S-------SSS
>forward_589
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------CGTGCATCCCATGAGACTCA---------------------------------------------------
--------------------------------------------------------------------------------
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---------------
>reverse_2146
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------GACTGGTATGGCTGC
ACTGA---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---------------
>forward_1630
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------ACTGGCAGTGCATGAGATCC--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------
>reverse_3511
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------TACGGTTGTA
GCTTGGCTGG----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------
