>input_sequence_49812
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------ATGCGGTGGTGGCTGCA
CCGCCTCGCGGCTGCAGCGGCCTTCCTTGCCGCCGCGCTGGCT---------------CTGAGG---------------T
CGCCGGCGCCGCTGCGGTTCGCGTCGGGCGGCCGGTTCAAGGTGGCGCTGTTCGCGGACCTGCATTACGGCGAGAACGCC
TGGACGGACTGGGGCCCCGCGCAGGACGCCGCCTCGGACCATGTCATGGCCACCGTGCTGGACGCCGACAAGCCAGGTTA
TCAGTTGCCCTGCC-----------------CCGT---CCCATGCGTGAGCTGCGCTGAATTTTTCACTGAATTCCAGCT
TTTCTCTGAATTT-----TTACCTTCCAAATTACTCTTGTGCTGTATTATTG----GCAGACTTCGTGGTGTACCTCGGC
GACCTCGTGACAGCCAACAACGTGCCGATCCCCAACGCGACCCTCTACTGGGACAGGGCCATTTCTCATTCCCGACGCAG
GGGCGTCCCGTGGTCCACCGTGTTCGGCAACCACGACGACATGCCCTTCGAGTGGCCGCCGGAGTGGTTCTCCCCCGCCG
GCATCCCGCCCGTGCACTGCCTATCAGCGGCGGCCATGCAAACCTC------------AGGTAACAGAACATTCCAAATC
CCTCTGAATTCTGTACTCAACCAGTCCGCGGGAAGTAGT--GTGTGCGCCGTGAATGTTTCAGGGTGCAGCTTCAGAGGG
ACGCCGCGCATCGAGCTGATGAAAACCGAGCTCAACCGCGACGGTGCAGACGGGTTATCGCGCTCGTCGGTCGGGCCCCA
GGAGCTCTGGCCCGGCGTCTCCAACTACGTTCTGCAGGTGCTCTCGCACGAGAAGCAACAAGACCCTGCTCTGCTCATGT
ATTTCCTCGACTCGGGCGGTGGATCCTACCCGGAAGTCATATCCTCTGCACAGGTCCGGTGGTTCGGTAACCAGTCTCAG
TCCCTCAATCCAGATGGCAGGTCAAAAACTAACTTGCGACAATTCT----------TACTCAACAATTGAGCTGACATAG
TGACATTGGCATGTTGATGTTGCA--ATTTGGATAATCTTT--------TCTGCAGGATTCCTGAGCTGATTTTTTGGCA
CATACCAAGTACAGCATACGTCAAGGTGGCACCAAAGTCTAAGACTGAGATCTGCAAGCCCTGCGTTGGTTCTCTCAACG
AGGAGGATGTGGCGCCACAAGAA---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------GCCGAATGGGGCGTGATGGACGCTCTTGCCAAGAGGT
CTTCAGTTAAAGTATAA---TACTACTTTGTCTGAAACTCTGATGAACTACATGCCGGATCATATCTCTCAAAGTTGTGT
AATGTGGTTACCTTTTGATGTGTAC----------------CTAGGCGATCTTCGTGGGGCACAACCACGGGCTCGACTG
GTGCTGCCCGTACGAGAAACTCTGGCTGTGTTTCGCGCGCCACACGGGTCACGGCGGATATGGTGACTGGCCAAGAGGGG
CAAGGATCGTTGAGATAGCCGAG---AAGCCGTTCTCTGTCCACTCCTGGATACGGATGGAGAACGGGAGCACGCACAGC
CATATTACATTGTCTTGA--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------
>chr3D_1_TraesCS3D01G477500
GTTTGGATAGAAGGAGCAACATAATATATACTAAGTATGTACAATGTTAGAATTTATGGAATCATGGAAATATATTTTCA
AAATAAATAGTACGTATTAAATATGTTGCCCGTGCAATTTGAAAATAAATACAAGGTATTTAGGACGTTTCCTGCGCAAC
TGCCACTGTCCTATTGTCCTAGGCTGCGTATTATGCTAAGCTTTGATGAAGAGAAAAATAAAATGAATGTGGCATTTGGT
GAATTTGCGAAGCAAGGGGGGGTTTAGCGCATCACAGGCTACTTATCTGTCCTTTGCGGGGATTATCCGTACTATTCTCG
TTTCTTGGCCTTGTTTTATATAGTGATTATTCTTCATTTGATTTCTGTTTTTTGCAAGAATGTTTTATTCATAATAATTG
TCTGATGTTGTTGTTTTGCTGAAACGTAGTTTAAAGTCACTATTACCTCTGCATGCGTGCAAGCGCGCGTGTGTTTTTAA
ACCCACTGTTTCTCAGCAGATAGTGCACAAGCGATCAAACTACGGTGTATTCGGAAGCATAAATACGTGGCAGGAACTTT
ATCTAGCTCGATCGAATCGCCACCAGCCTGGCATATTCTTATTCTTGTTGCCTAGAGGATATTCTTGATGCCTCTGCCTT
TCTTCTGATAAACCAACCTGAACATCGCC---GTCAGTTGGCCTAAGTAACGACACGATGAACCTACGCATACGCTCTGG
CTTTCTGTAGTACAGTACTAGTATATTTTTGTTATTTTCTTGATGATGATAATCTAACGTACGAACTTCACGAGGCACTT
ATTCTACAAAAAAAAATTCAGGAG-GTGCCACGACACGAGAGTGGCCTTGTGTGTCGACTGTGACCGTGACCCATCGAGG
AGCGGCGGCA-------------GTGATGGCACACCAATAATTTTGAAGCTTTTTCCAGACACTGGATCGTGGCCTTCTG
CC------ACGGCCTCGCTTAACGCCTCACAGCTCAACCACCACCTAGAACGGATCACACCAGATGCGGTGGTGGCTGCA
CCGCCTCGCGGCTGCAGCGGCCTTCCTTGCCGCCGCGCTGGCT---------------CTGAGG---------------T
CGCCGGCGCCGCTGCGGTTCGCGTCGGGCGGCCGGTTCAAGGTGGCGCTGTTCGCGGACCTGCATTACGGCGAGAACGCC
TGGACGGACTGGGGCCCCGCGCAGGACGCCGCCTCGGACCATGTCATGGCCACCGTGCTGGACGCCGACAAGCCAGGTTA
TCAGTTGCCCTGCC-----------------CCGT---CCCATGCGTGAGCTGCGCTGAATTTTTCACTGAATTCCAGCT
TTTCTCTGAATTT-----TTACCTTCCAAATTACTCTTGTGCTGTATTATTG----GCAGACTTCGTGGTGTACCTCGGC
GACCTCGTGACAGCCAACAACGTGCCGATCCCCAACGCGACCCTCTACTGGGACAGGGCCATTTCTCATTCCCGACGCAG
GGGCGTCCCGTGGTCCACCGTGTTCGGCAACCACGACGACATGCCCTTCGAGTGGCCGCCGGAGTGGTTCTCCCCCGCCG
GCATCCCGCCCGTGCACTGCCTATCAGCGGCGGCCATGCAAACCTC------------AGGTAACAGAACATTCCAAATC
CCTCTGAATTCTGTACTCAACCAGTCCGCGGGAAGTAGT--GTGTGCGCCGTGAATGTTTCAGGGTGCAGCTTCAGAGGG
ACGCCGCGCATCGAGCTGATGAAAACCGAGCTCAACCGCGACGGTGCAGACGGGTTATCGCGCTCGTCGGTCGGGCCCCA
GGAGCTCTGGCCCGGCGTCTCCAACTACGTTCTGCAGGTGCTCTCGCACGAGAAGCAACAAGACCCTGCTCTGCTCATGT
ATTTCCTCGACTCGGGCGGTGGATCCTACCCGGAAGTCATATCCTCTGCACAGGTCCGGTGGTTCGGTAACCAGTCTCAG
TCCCTCAATCCAGATGGCAGGTCAAAAACTAACTTGCGACAATTCT----------TACTCAACAATTGAGCTGACATAG
TGACATTGGCATGTTGATGTTGCA--ATTTGGATAATCTTT--------TCTGCAGGATTCCTGAGCTGATTTTTTGGCA
CATACCAAGTACAGCATACGTCAAGGTGGCACCAAAGTCTAAGACTGAGATCTGCAAGCCCTGCGTTGGTTCTCTCAACG
AGGAGGATGTGGCGCCACAAGAA---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------GCCGAATGGGGCGTGATGGACGCTCTTGCCAAGAGGT
CTTCAGTTAAAGTATAA---TACTACTTTGTCTGAAACTCTGATGAACTACATGCCGGATCATATCTCTCAAAGTTGTGT
AATGTGGTTACCTTTTGATGTGTAC----------------CTAGGCGATCTTCGTGGGGCACAACCACGGGCTCGACTG
GTGCTGCCCGTACGAGAAACTCTGGCTGTGTTTCGCGCGCCACACGGGTCACGGCGGATATGGTGACTGGCCAAGAGGGG
CAAGGATCGTTGAGATAGCCGAG---AAGCCGTTCTCTGTCCACTCCTGGATACGGATGGAGAACGGGAGCACGCACAGC
CATATTACATTGTCTTGAGTTT-GATTCGGATAGGATTCAGAATCGTATGCACAATGCAAACAATTTGTAACTTTGTATT
CGATGATATCCCACCGCTCCCACCCACCGCGCCCCACCGCACCCCACCTCCGACACCTCGCCGGCGGCGCTCCCCTCCGT
CGGGCGCCCTCCCACCCCAGATCCTATAACTTGCGCGCACAAATCGAATCCAGGATCCAGCGAGCAGGGTGCACCAGTGC
CTCGGCGAGATGAGACTGGCGAAGTAGAAGGCGGTGGTGCACGAGAATCTGAGGGGAGAGATGCTGCGCGACATTCATAT
TTGTCAAAGGAGAATCGATTTCGAGACAGGGCTGCTGGCGGAGATCATCGTTATGGAAGCAACGGAAGAGGAGAAATCCA
GGATGCCTCAGCCCTGGAAGCAGAAGCCTGCCCAAATCTTCCAATGGGCAGTGACAGAAGCGAATTCCACGGAGCCGGTG
CAGAGTCACCGCTGGGCATGCGTTCTCAGAAAACTCAACTGAACACCGAACTTGGACCAGTTGCCTCCACCGCCAGCGAG
CTCGGACTAGATGATGGTGATAGCGACTCTGCTCCGAGCAGCCAGGAGCCAGTTTTGCTGTTTGGGAGAGTGGTAGAGGG
TGATGATAGCAATCAGACAAAAATGCTGCCCGTGACTGCCGGGGCCAGAAGTAGGTTTTTGGCTGGTTGCAAGGCTGCTG
GATTGCTTGATAAGGGGCATGAGCTGCACTTCCAGACTGAAGATCAGGCGTATCTGTGGCAGATGCTCGGTGCAGTCTCA
CTATACCAGTTAGGGAATAGCTGCGGCCATAGATCCAACCCCCTCTCTGTCAGAGCTGAACCGCACCAGTCGAGAGCAAG
CTCTGATTGCTGGTCACAAAGAGAGGTTGAGAAGGGAGTTGAGGATCCCAGGTCAGGGGAGAGACAACCCACAGAAGCTC
GTGATAAGGATTCTAGTTGCAGCAACAGAAGAGGAATTCCGATTGCAGCTGAAGGGGAG
>chr3A_543
ATAG----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------GTGGCAGGGATTTT
ATCTCGCTCGATCGAATCGCCACCAGCCGCA--------TATTCTTGGTGCCTAAAGGATATCCTTGCCGCCTCTGCCTT
TCTTCTGATAAACCAACCTGAACATCGCCATCATCAGTTGGCCTAAGGAACGCATATTCTTGGT-------------TGG
CTTTCTGC--------------ATAATTTTGTGAATTCCTTTG----GATAATCTAACGTACGAACTTCACAAGATGGGA
CGACGTGCC-------------AG-GTGCCACGTCCGTGCGTCTCTGCC--------ACTGTGACCGTGACCCGTCGAGG
AGCGGCGGCACAGGCAG----CAGTGATGGCACGCCAATAATCTTGAAGCTTTTTCCAGACACTGGATCGTGGTCTTCTG
CTACTGCTACGGCCTCGTTTAAAGC--------TCAACCACCACCGAGAGCGCATCACACCAGATGCGGTGGTGGCAGTA
CCGCCTCGTGGCTGCAGTGGCCTTCGTCGCCGCCGCCCTGGCCACCGGCGCCGCGGTGCTGCGG---------------C
CACCGGCGCCGCTGCGGTTCGGGCCGGGCGGCCGGTTCAAGGTGGCGCTGTTCGCGGACCTGCATTACGGCGAGAACGCC
TGGACGGACTGGGGCCCCGCGCAGGACGCCGCCTCCGACCGCGTCATGGCCACCGTGCTCGACGCCGAGAAGCCTGGTAA
TCAGTTGCCCT----------------------------------------------GAATCTTTCACTGAATTCCAGCT
TTCCTCTGAATTT-----TTACCTTCCAAATTACTCTTGTGCTGTATTATTG----GCAGACTTCGTGGTGTACCTCGGC
GACCTCGTGACAGCCAACAACGTGCCGATCCCCAACGCGACCCTGTACCGGGACAGGGCAATTTCTGCTTCCCGACGCAG
GGGCCTCCCGTGGTCCACCGTGTTCGGCAACCACGACGACATGCCCTTCGAGTGGCCGCCGGAGTGGTTCTCCCCCGCCG
GCATCCCGCCCGTGCACTGCCCACCTGCCGCG------------TC------------AGGTAACCGAACATTCCAAATC
GCTCTGAATTATGTACTCAACCAGTCCGT---AAGTAGTGCGTGTGTGCCGTGAATGGTTCAGGGTGCAGCTTCAGAGGA
ACGCCGCGCATCGAGTTGATGACGGCCGAGCTCAACCGCGACGGTGCCGACGGGTTATCGCGCTCGATGGTCGGCCCCCA
GGAGCTCTGGCCTGGCATCTCCAACTACGTGCTACAGGTGCTCTCGCACGAGGAACGACAAGACCCTGCTCTGCTCATGT
ACTTCCTCGACTCAGGCGGTGGATCCTACCCGGAAGTCATATCCTCTGCACAGGTCCGGTGGTTCCACAGCCAGTCTCAC
TTCCTCAATCCAGATGGCAGGTCAGAAGA-AACTTGCAGCAATTGAGATCAAGCTCTACTCAACAACTACTCA-----AG
TGACATTGGCATGTTGATGTTGCA--ATTTGTATAATCTTTTGCGATCATCTGCAGGATTCCTGAGATCATCTTCTGGCA
CATACCAAGCACATCATACGTCAAGGTGGCTCCAAAGTCCAAGACTGAGATCTGCAAGCCCTGCGTTGGTTCCCTCAACG
AGGAGGATGTGGCGCCACAAGAA---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------GCCGAATGGGGCATGATGGACGCTCTTGCCAAGAGGT
CTTCAGTTAAGGTAG---ACTACTACTTTGTCTGAAACTCTGATGAACTACA-GCCGGATCATCTCTC---AAGTTGTGT
AATGTGGTTACCTTTTGATGTGTAC----------------GTAGGCGATCTTCGTGGGGCACAACCACGGGCTCGACTG
GTGCTGCCCGTACGAGAAACTGTGGCTGTGTTTCGCGCGGCACACGGGTCACGGCGGATATGGTGACTGGCCAAGAGGGG
CAAGGATCGTTGAGATAGCCGAG---AAGCCGTTCTCTGTCCACTCCTGGATACGGATGGAGAACCGGAGCACGCACAGC
CATATTACATTGTCTTGAGCTT-GATTCGGATAGGATTCAGAATCGTCTGCACCATG-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------
>chr3B_566
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----GCTCGATCGAATCGCCACCAGCCGCA--------TATTCTTGGTGCCCAAAGGATATTCTTGATGCCTCTGCCTT
TCTTCTGATAAACCAACCTGAACATCGCC---ATCAGTTGGCCAAAGGACGCA---------------------------
---------------------TATAATTTTGTGAATTCCTTTG----GATAATCTAACGTACGAACTTCACAAGATGGGA
CGACGTGCC-------------AGTGTGCCACGTCCGTGCGTCTCGGCCC-------ACTGTGACCGTGACCCGTCGATG
AGCGGCTGCACAGGCAGGCAGCAGTGATGACCCGTCGA-------GAAGCCTTTTGCAGACACTGGATCGT---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----GGTCTGGGGCCCCGCGCAGGATGTCGCATCCGACCGCGTCATGGCCACCGTGCTCGACGCCGAGAAGCCTGGTAA
TCAGTTGCCCT----------------------------------------------GAATCTTTCACTGAATTCCAGCT
TTCCTCTGAATGTTCACCTTCCATTCCAAATTACTCTTGT-----ATTATTG----GCAGATTTCGTGGTGTACCTCGGC
GACCTCGTGACAGCCAACAACGTGCCGATCCCCAACGCCACCCTGTACTGGGACATGGCGATTTCTCATTCCCGGCGCAG
GGGCATCCCGTGGTCCACCGTGTTCGGCAACCACGACGACATGCCCTTCGAGTGGCCGCCTGAGTGGTTCTCCACGGCCG
GCATCCCGCCGGTGCACTGCCCGCCTGCGGCG------------TCCATGCCAACCTCAGGTAACCGAACATTCCAAATC
CCGCTGAATTCTGTGTTCAACCAGTCCGT---AAGTAGG--GTGTGTGCCGGGAATGGTTCAGAGTGCAGCTTCAGAGGG
ACGCCGCGGATCGACCTGATGACGGCTGAAATGAACCGCGACGGTGCCGACGGGTTATCGCGCTCGTCGGTCGGCCCCCA
GGAGCTCTGGCCCGGCATCTCCAACTACGTGCTGCGGGTGCTCTCGCATGAGAAGCAACCAGACCCTGCTCTGCTCATGT
ATTTCCTCGACTCCGGCGGTGGATCGTACCCGGAAGTCATATCCTCTGCACAGGTCCGGTGGTTCTGCTACCAGTCTCAG
TCCCTCAATCCAGATGGCAGGTCAAAAACTAACTTGCCACAATTCT----------TACTCAACAACTGAGCTGACATAG
TGACATTTGCATGTTGATGTTGCACAATTTGGATCATC-TTTGCGAGCCTCTGCAGGATTCCAGAGATCATCTTCTGGCA
CATACCGAGCACAGCATACGTCAAGGTGGCTCCAAAGGCCAAGACTGAGATAACAAAGCCCTGCGTTGGCTCCCTGAATG
AGGAAGATGTGGCGCCACAGGTA---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------GCCGAATGGGGCATGATGGACGCTCTTGCCAAGAGAT
CTTCAGTTAAGGCATACTACTACTACTTTGTCTGAAACTCTCATGAACTGCATGCCGGATCATCTCTC---GAGTTGTGT
AATGTGGTAACCTTTTGA-------------------------AGGCGATCTTCGTGGGGCACAACCACGGGCTGGACTG
GTGCTGCCCGTACGAGAAACTGTGGTTGTGTTTCGCGCGGCACACGGGTCACGGCGGATATGGTGACTGGCCAAGAGGGG
CAAGGATCGTTGAGATTGCCGAG---AAGCCTTTCTCTGTCCGCTCCTGGATACGGATGGAGAACGGGAGCACGCACAGC
CATATTACATTGTCTTGAGCTTTTATTCAGGTAGGATTCAGACTTGTCTGCACCATG-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------------
>chr2D_997
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------CCAGATGCGGTGGTGGCAGTG
CCGCCTCGCGGCTGCCGTGGCCCTGCTCGCCGCCGTGCTGGCT---------------CTGGGCGCCGCGGGGCCGCGCT
CGCCGGCGCCGCTGCGGTTCGCGCCGGGTGGCCGGTTCAAGCTGGCGCTGTTCGCCGACCTGCATTACGGCGAGAACGCC
TGGACGGACTGGGGCCCCGCGCAGGACGACGCCTCCGACCGCGTCATGGCCGCCGTGCTCGACGCCGAGAACCCAGGTGA
GCGTGCTAGTCCAGTCTGGTGGCCGCCCCATTCCCTCCCCCCTGTTCAAGCGGATTCTAGTTACTAGTTTCG--------
------------------------TCCAAATTAGGAATTTTCTGAAGGAATCGTCCGCAGACTTCGTGGTGTACCTCGGC
GACCTCGTGACGGCGAACAACGTGCCGGTCGCCAACGCGAGCCTGTACTGGGACCGGGCGATCTCCCCGGCCAGGCGCAG
GGGCGTCCCGTGGTCCACGGTGTTCGGCAACCACGACGACATGCCCTTCGAGTGGCCGCCGGAGTGGTTCTCCCCCGCGG
GCGTCCCGCCGGTGCACTGCCCGCCTGCCGCG------------TCGGCCATGCCAGAGCCGGACC--------------
------------------------------------------------------------CAGGGTGCATCTTCCGGGGC
ACGCCGCGGGTCGAGCTGATGACGGCCGAGCTCGACCGGGCTTG------CGGGCTGTCGCGCTCCTCGGTCGGCCCCCG
GGAGCTCTGGCCCGGCGTCTCCAACTACGTGCTGCAGGTGCTCTCGCACGAGAAGCCACATGACCCTGCTCTGCTCATGT
ATTTCCTCGACTCCGGCGGCGGATCCTACCCGGAGGTCGTATCCTGCGCACAGGTCACGTGGTTCCACAGCCAGTCTCGG
TTCCTCAATCCAGATGGCAGG-----------------------------------------------------------
---------------------------------------------------------ATCCCTGAGCTGGTATTCTGGCA
CGTACCGAGCACGGCGTACGTCAAGGTGGCTCCGAAGGCCACGAGCGAGGTCAGGAAGCCCTGCGTCGGCAGTCTCAACG
AGGAAGACGTGGCGCCACAGGTG---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------GCCGAATGGGGCATGATGGACGCTCTTGCCCACAGGC
CTTCAGTTAAGGTATCTGAATTCTGAAAC-TCTGAAACTCTGAGTACTAGCACGTCTAA---------------------
--------------TTGATGTGTGCATCTATCTTGTATTGTGTAGGCGATCTTCGTGGGGCACAACCACGGGCTGGACTG
GTGCTGCCCCTACGAGAAACTGTGGCTGTGCTTCGCGCGGCACACGGGGCACGGAGGGTACGGTGACTGGCCAAGAGGGG
CGAGGATCGTTGAGGTCGCTGAAAAAAAGCATTTCTCTGTCAACTCCTGGATCCGGATGGAGAATGGGTCCACGCACAGC
CATGTTACCTTG--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------
>chr2B_1067
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------T
CGCCGGCGCCACTGCGGTTCGCGCCGGGTGGCCGGTTCAAGGTGGCGCTGTTCGCCGACCTGCATTACGGCGAGAACGCC
TGGACGGACTGGGGCCCCGCGCAGGACGACGCCTCCGACCACGTCATGGCCGCCGTGCTCGACGCCGAGAAGCCAGGTGC
GTAATATATAA---TCCGGTGGCCGCCTCATCCCT---CCCCTGTGCAAGCGGATCCGAGCTGTACACTGTAG-------
------------------TTTCCTTCCAAATCACC------------GAATCGTGCGCAGACTTCGTGGTGTACCTCGGC
GACCTCGTGACGGCGAACAACGTGCCGGTCGCCAACGCGAGCCTGTACTGGGACCGGGCGATCTCCCCGGCCAGGCGCAG
GGGCGTCCCGTGGTCCACGGTGTTCGGCAACCACGACGACATGCCCTTCGAGTGGCCGCCGGAGTGGTTCTCCCCCGCGG
GCGTCCCGCCGGTGCACTGCCCGCCTGCCGTG------------CCGGCCAT------GCCGGACC--------------
------------------------------------------------------------CAGGGTGCAGCTTCCGGGGC
ACGCCGCGGGTCGAGCTGATGACGGCCGAGCTCGACCGGGCTTG------CGGGCTGTCGCGCTCCTCGGTCGGCCCCAG
GGAGCTCTGGCCCGGCGTCTCCAACTACGTGCTGCAGGTGCTCTCGCGCGAGAGGCCGGAGGACCCTGCTCTGCTCATGT
ACTTCCTCGACTCCGGCGGCGGATCCTACCCGGAGGTCGTATCCTGCGCACAGGTCACGTGGTTCCAGAGCCAGGCTCGG
TTCCTCAATCCAGACGGCAGG-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------
>chr3A_1819
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------TCATGT
ACTTCCTCGACTCCGGCGGTGGATCATACTCGGAAGCCATATCCTCTGCACAGGTCCGGTGGTTCTGTAACCAGTCACAG
TCCCTCAATCCAGATGGTAGGTTAAAAATTAACTTGCAA-AATTCT----------TACTCAACAACTGAGCTGACATAG
TGACGTTGGCATGTTGATGTCGCACAATTTGGATTATC-TTTGCGAGCTTCTGCAGGATCCCCGAGATCATCTTCTGGCA
CATACCAAGCACAGCGTACCTCAAGGTTGTTCCAAAGGCCAAGACTGAGATAAGAAAGCCCTTCGTTGGCTCCCTGAATG
AGGAAGATGTGGCGCCACAGGTAGGGGTGGATTAACGAGCAGCTCAAAGCCCTTCATTGGCTCCCTGAATGAGGAAGATG
TGGCGCCACAGGTAGGGATGGATTAACGAGCAGCTCGGCTCGTTAAGCTCGTGTTCGTTAATGCTCGACTCGTTAAACTC
GTTAAGATTAACGAGCAGAAAATCCTGCTAGGTTCGGCTTGTTTGAAACTCGTTAAGCTCGTGAGCGCTCACGAGCGCTC
GTTAACAGATTGTAGTGTGCTATGATATTCAGGATGAATGTGTAGGTGTGATTTTTAAGATGAAATATGATGGCCAAAAA
AGAAATGCATTAGTTTGTTGCCTCATATGTTGACTAGATTCAAAGATGGGTTGAGGTGCTACAGAAAGTTTGTCACGTAA
GATGAAAATATGTGTTGTGTTGTTACTAACGAGCTTAACGAGCTACTCGTAAAGCTCGTTAGCTCGTTCGTTAAGCTTAA
CGAGCTGAAATCAATGATTGGTTATGTTCATTAAGAAGCGAGCTACGAGCTTAACAAGCCAAACTATCGAGCGCTCATTA
AGTCGCGAGCTACGAGCTTTTTGTCCAGCCCTAGCCACAGTTAGCCGAGTGGGGTATGATTGACGCTCTTGCCAAGAGAT
CTTCAGTTAAGGTATACTACTACT---TTGTCTCAAACTCTGATCAACTACATGCCGGATCATCTCT--CAAAGTTGGGT
AATGTGGTTACCTTTTAACGCATAC----------------CTAGGCGATCTTCGTGGAGCACAACCACGGGCTCGACTC
GTGCTGCCCGTCTGAGAAACTGTGGCTGTGTTTCACGCGGCACACGGGTCACGGCGGATATGGTGACTGGCCGAGAGGAG
CGAGGATAGTTGAGATCACCGAG---AAGCCTTTCTCCGTCCACTCGTGGATACGGATGGAGAATGGAACGTCACACAGC
CACATTATATTGTCTTAGC--TTGATTCAGGTAGGATTCAGAATCGTCTGCACCATG-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------
>SNPs
S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S-S---
----S-----------------------SSSSSSSSSSS--------S------S-------------------------
--------------------------------S--------------S-----SSSSSSSSSSSSSSSSSSSSSSSS---
-------SSSSSSSSSSSSSS----S------S-S--S---SSSSSS------------------------S--SSSSSS
SSS-SSSSSSSSSSSSSSSSSS-----------S-SSSSSSSSSSSSSSSSSSSSSS----------------S------
---------------------------------S--------S------------------------------S------
-S---------------S----S--SSSSSSSS------------S---S--S-----------------------S-S-
-----------------S---------S---------------------------------S------------------
-----------------------S--------------------------------------------------------
-----------------------------------S-----S-----------------S--------S---------S-
-----------SSS-------------------S-------S--S-SS---S-SS-S-----------------------
--S-----------------------------------------------------------------------------
--------------------------------------------S--------------S--------------------
--------------------------------------------------------------------------------
---------------------S-S-S------SSSSSSSSSSSS---------------------S--------------
----------------------------SSSS--------------S----------S----------------------
----------------------SSS----------------------S--------------------------S-----
------------------------------S-------------------------------------------------
-------------S---------------------------------------------------S--------------
-------------------------------------S----------------------------S-------------
-----------------------------------------------------------------------S--S-----
---------S--------------------S--------S----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------S------------------------
----------S-----S----------------------------------------------S----S-----------
--------------------------------------------------------------------------------
---------------------S-----------------S----------------------------------------
--------------------------------------------------------------------------------
-------------------S---------------------------S-----S---SSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_800
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------ACGAACTTCACGAGGCACTT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------
>reverse_3473
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------GGTGGTGCACGAGAATCTGA----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------
