>input_sequence_49717
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--------------------------------------------CACACAAATTACTAGACA--TCCTCGTTCTCTGTGC
AGTTCCAACAATCCTAGTGATGGCGTGTGCAAGCCATGTCATGATTTTCCTTGTGTTCTCAAATTTAGCCATAGCCATGG
CCACCCTTCCTCCTCCCTTGTATGACCCTAACCTAGGGAAGTGTAAGAATAGTTGTGAGGAAGAGCTCAATCTATCTTTG
TACCTACACCAAGTTGTGACAGGACCAGCCCACAACCAAGAAGTAATTCTCAGCCCTGGCTTTCCTAACATGTTTGGTAT
GATAGCCGTCGTTGACTGGACCATATACGCCGTCCCTGATTCCACTTCAAGTATCATTGCTCGGGCAAAGGGAATGACTA
TCCAGGCTACCCAAAGCGAGGTCAATGGTGTTGCCTGGTTTCTTCCTTTCAGCATGGTCTTTCAGGATTCCAGGTATATC
CATGCAGGTTTAACCATCCAAGTATTGTTTGTAGATTAAATATATGGATTTAT-TTGCATTTTCTTCAGGTTTGGTTTTT
CTGATTTTAGTTACAACTTTAATAGGTTTGGCGGTTCTACGCTGCAAGTGATGGGAGCAATTACTGGTGCAGTAGATGGT
GAGTGGGCTATTGTGGGTGGGACTGGCAAATTGTCCACGGCACGTGGTACTATTAAGTTCATAGCAGTCCAGGCACAGAG
CACCCCAACCTTTGAGGTCTACAG-AAGGATTGATATCCATGCATTCTACACACCCGCACCGGCCGTAAGTATTACTGAT
CTCTGAATTGTGATATCCATATATATATATATATGAATTTATGTCATGCTCAGTAACCATATTTATGTAATTAAGTTGAC
AATGAATATCCAATTTGACTCCCAAGCTCATCTACACCCTATGAACAGTAAATTCATAAAAACAATATTTGATAAAATCG
AAAAAATTCGATTTTTTTTCTGGTGAAAGATGCTTGAGTGCATGATGCCCGTGCCAAGTTTTAGCGCATTCAAACATCTA
AGTAGCTCTAAAAAAAATCAATCTATTAATGTAAGAATCATATGTATTGATGCCAAAAAAAGGTCTACGTTAATATAGAT
TCTATCTCTTTCACATGATAGAATGATTAATATTTATTTTACACTGGGAAATGTAAACTAATAAAACATATTATTCTGAT
CTATCTAGTCAAACTAATTATGAAATATTTGCAGTCACTATTAGTGTTTCTGTGATGAATAATAAGTCCCTTAATCATGC
TCTTGTAAAATTCATATTGCGTTATTTGATTACTTATTATGTTGTCTACTAAGGATTTATTTATCTTCTTTTCACAGGTT
TAAGATATGAAGAATACACATGCAGCACTCCGACTGGAAAGGCGAGCCAGCAATCTCGCATAAATAAAATATGTGTTTTC
CATTATGACTAGTAGTACTACCTCGTTGTAATATGTGGTCAAGTCGTCTTTACTTTCAAAAAATGCAGGAGTTTGTGGCA
TATCATTGAAAATCTTAGACATAAATCCACAAG-----------------------------------------------
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>chr7D_1_TraesCS7D01G525500
TATCAAGTACCAACATTTGACATCAAATAAGATTCTGTTTCTTGTGGGGACGAGCATTTAATGCAGTTTTAGTTTCTGTC
AGAGGAACCACATCTGATTATATTCGAACATGATAAGATACACACTAAGCATGTATCAGCAAATTCGGTGTTCCTTGAAA
ACTTATTTTTACCAAGACTATTTATTGATTTTGCGATGTTGTTTCTGCATATGTAGTTTGAATTTTGCATGTAGTTTAGA
TGGTCTACGGCAGCCTACGTAGACCAACAAAGCTTAGTGCATGCGTTTGCATGATAGCCGAGTATTATGTGCATTTTGGA
GCGTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCGTGTTATTTTCACTCCCCTATCTGTGGT
GTAAAAAGGGATTTCGTGTGCAAAGTAAATTAGTTCTTTTAGACACCACTTAAACTTTACAAGCTAGTTGGCATAATAAG
GTAACATGGTCTTTACTAGTTACGGTCTCAATGCATGGATCTGTTTCTTTAACAAATCTTGGGGTCGATTTTGCATCTCG
AATGATGTCACGTCACATGGTCACCCATGACACTAGGTGTGACGTGTGAATGTATATTAATGTGTCTCATTTCTTTCTAT
TTATCTACTTGACTAGTCTCATAGTTGGTCTTATAGGAAAGAAATTTATTTTCGTATGGCATACTCAAGAACTAGCTCTA
TAAATATGGTGTCTCT-CCATTCATACCTCATACT---AACTCACACACAAATTACTAGACA--TCCTCGTTCTCTGTGC
AGTTCCAACAATCCTAGTGATGGCGTGTGCAAGCCATGTCATGATTTTCCTTGTGTTCTCAAATTTAGCCATAGCCATGG
CCACCCTTCCTCCTCCCTTGTATGACCCTAACCTAGGGAAGTGTAAGAATAGTTGTGAGGAAGAGCTCAATCTATCTTTG
TACCTACACCAAGTTGTGACAGGACCAGCCCACAACCAAGAAGTAATTCTCAGCCCTGGCTTTCCTAACATGTTTGGTAT
GATAGCCGTCGTTGACTGGACCATATACGCCGTCCCTGATTCCACTTCAAGTATCATTGCTCGGGCAAAGGGAATGACTA
TCCAGGCTACCCAAAGCGAGGTCAATGGTGTTGCCTGGTTTCTTCCTTTCAGCATGGTCTTTCAGGATTCCAGGTATATC
CATGCAGGTTTAACCATCCAAGTATTGTTTGTAGATTAAATATATGGATTTAT-TTGCATTTTCTTCAGGTTTGGTTTTT
CTGATTTTAGTTACAACTTTAATAGGTTTGGCGGTTCTACGCTGCAAGTGATGGGAGCAATTACTGGTGCAGTAGATGGT
GAGTGGGCTATTGTGGGTGGGACTGGCAAATTGTCCACGGCACGTGGTACTATTAAGTTCATAGCAGTCCAGGCACAGAG
CACCCCAACCTTTGAGGTCTACAG-AAGGATTGATATCCATGCATTCTACACACCCGCACCGGCCGTAAGTATTACTGAT
CTCTGAATTGTGATATCCATATATATATATATATGAATTTATGTCATGCTCAGTAACCATATTTATGTAATTAAGTTGAC
AATGAATATCCAATTTGACTCCCAAGCTCATCTACACCCTATGAACAGTAAATTCATAAAAACAATATTTGATAAAATCG
AAAAAATTCGATTTTTTTTCTGGTGAAAGATGCTTGAGTGCATGATGCCCGTGCCAAGTTTTAGCGCATTCAAACATCTA
AGTAGCTCTAAAAAAAATCAATCTATTAATGTAAGAATCATATGTATTGATGCCAAAAAAAGGTCTACGTTAATATAGAT
TCTATCTCTTTCACATGATAGAATGATTAATATTTATTTTACACTGGGAAATGTAAACTAATAAAACATATTATTCTGAT
CTATCTAGTCAAACTAATTATGAAATATTTGCAGTCACTATTAGTGTTTCTGTGATGAATAATAAGTCCCTTAATCATGC
TCTTGTAAAATTCATATTGCGTTATTTGATTACTTATTATGTTGTCTACTAAGGATTTATTTATCTTCTTTTCACAGGTT
TAAGATATGAAGAATACACATGCAGCACTCCGACTGGAAAGGCGAGCCAGCAATCTCGCATAAATAAAATATGTGTTTTC
CATTATGACTAGTAGTACTACCTCGTTGTAATATGTGGTCAAGTCGTCTTTACTTTCAAAAAATGCAGGAGTTTGTGGCA
TATCATTGAAAATCTTAGACATAAATCCACAAGGCCTTTGTCCTTTTTTGTAAAATTGGACTGTATGATTTAATTTGGAA
TATTACAATCTTAATATATTATGTGAAAAGGAACAAAGCCTTTGTTCTTCGTTGGCCTTCCTATTTTTATATTCCTTGCA
TATTCGGGTTGTGAGGGAACAAATATGTTTTTCATCCAAATGCAGTTTTTTTCTCGACGAACACAAGGCATCACTTACCA
CATGGTTCTCATGTTCGATCCTTCATGTGGGTCTGCTACCTTCCCCACCCCTCAGTCCTTCCTTCTCTTGGACTCACCAT
TCGCTACCTCTAGCATCGACCTCTTCCCCCTGCGCATCCACCTCCCCATCTACCTCCTTGTCCCAGTCGCCTCCATCAGT
GGGAAGTGGCGGATCCGCCATGCAAGTAGGGAGGCGAACAACCTGGATGAACTAGACTCAAGCCCTACCTGAGAGATCCC
GACGGGGCGTAAGGGTTTGTTGGACTCCGACTTAGATCGCAGGAGGAAGGGTAAATCCTAGGTAAGCCCTTGGCGAAATG
AGACCAACTAAAAAGAAAAAGGAAGGCAACAAAGATTACTGTCTAGGGCAGCCCGTCAAAAAACATCCCACGGGAACACA
ACAGTCCTAGCCACCAAAGTAGCTTCCACTCAAATAAAATAAAACTAGTAGTGTGACCCGCGCATTTGTGCGGCTAGATT
TCGCACACATTTTTATATTAATTTGTATTCCTCTATAGGATATTTAGCCAACTATCAATTCAAAACATGACTAACACATA
TGCTTTGTGGAAAAATAGCTGCACTTTGTAAAGCATGTTTTTGTACAAATTCTATTATGTAGTCATTATAAAACCATCAA
TAAAGACCGATAGAATTGGATCCTTTGGCTCACGGTGTAACTCATGGACTAATTTAGGGCCTTTTATGTCTATATTTCCT
TTAAATAAATTTTAGTGGAATCTGTAATTAAGGATCAAAATAAAAAATGAAACCTCATACTTGATGTTAGTTG
>chr2D_915
AGTAAAGGAAAGTGATTTTTT-----------------------------------------------------------
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------------------------------------------------------TACGGCAGAGTCGAAAACTAACTCTA
TAAATATGTTGTCTCTTCCATTCATATCGCAGTACCAAAACTCATACCTGAACTACTAGACATATCCTCGTCCTCTCTGC
AAGTCCAAGAATCCTAGTGATGGCCGGTGCTAGCCATGTCGTGGTTTTCCTTGTCTTCTCAAATTTGGCCATAGCCATGG
GCGCCACCCCTCCTATCTTAAAT---CCTTACGTAGGGAAGTGTAAGAGTAGTTGTGAGGAAGAGCTCAATATATCTTTG
TACCTGCACCAAGTATTCGCTGGAGCAGCCCGCAACCAAGAAGTAATTCTCAGTCCCGGCTTTCCTAACTCGTTTGGGGT
GATAGCAGTTAATGACTGGACTATGCATGCCACCGCTAATTCCACTGCAAGTATCATTGCTCGGGCAAAGGGAATGCATA
TCCAGGCTACCCAAAGCCAGGCCAATGGCTTTGCTTGGTTTGTTCCTTTCAGCATGGTCTTTGAGGACTCCAGGTATATC
CATGCAGGTTTAACCATGCATGTACCATTTGCAGATTAAACATATGAATATAAGTTTTATTTGTTTGAGGTTCACTTTTT
CTAATTATAGATACACCGTTTACAGCTTTGGTGGGTCTACATTACAAGTGATGGGGGCAATTAGTGGTGCA---AATGGT
GAGTGGGCTATCGTGGGAGGGACAGGAAAACTGTCGATGGCGCGTGGTACCGTAAACTTCACAGAAGTCCAGCCACAGAG
CAACCCAAACAGTGAGAACTACAG-AAAAATTGATATCCATGCATTCTACACACCATCGCCGGCCGTAAGTATACTTAAT
CTTTGAA-------------------------------------------------------------------------
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>chr2D_928
A---------------TTTTT-----------------------------------------------------------
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------------------------------------------------------TATGGCAGAGTTGAAAACTAACTCTA
TAAATATGTTGTCTCTTCTATTCATATCTCAGTACCAAAACTCATACCCGAAC----------ATCCTCGTC--CTCTGC
AAGTTCAAGAATCCTACTGATGACCTGTGCTAGCCATGCCGTGATTTTCCTCGTCTTCTCAAATTTGGCCATAGCCATGG
GCGCCACCCCTCCTCCCTTAGCA---CCTTACGTAGGGAAGTGTACGAGTAGTTGTGAGGAAGAGCTGAATCTATCTTTG
TACCTGCACCAAGTTGTCAGTGGAGCAGCCCACAACCAAGAAGTAATTCTGAGCCCCGGCTTTGCTAATTCGTTTGGTGT
GATGGCAGTTAATGACTGGACTATGCATGCCACCAATGATTCCACTGCAAGTATCATTGCTCGGGCAAAGGGAATGCATA
TCCAGGCTACCCAAACCCAGGCCAATGGCTATGCTTGGTTTCTTCCGTTCAACATGGTCTTTGAGGACTCCAGGTATATC
CATGCA--------------------------------------------------------------------------
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>chr2A_928
A---------------TTTTT-----------------------------------------------------------
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------------------------------------------------------TATGGCAGAGTTGAAAACTAACTATA
TAAATATGTTGTCTCTTCTATTCATATCTCAGTACCAAAACTCATACCTGAAC----------ATCCTCGTC--CTCTGC
AAGTTCAAGAATCCTACTGATGGCCTGTGCCAGCCATGTCGTGATTTTCCTCGTCTTCTCAAATTTGGCCATAGCCATGG
GCGCCAACCCTCCTCCCTTAGCA---CCTTACGTAGGGAAGTGTAAGAGTAGTTGTGAGGAAGAGCTCAATCTATCTTTG
TACCTGCACCAAGTTGTCAGTGGAGCAGCCCACAACCAAGAAGTAATTCTGAGCCCCAGCTTTGCTAATTCGTTTGGTGT
GATGGCAGTTAATGACTGGACTATGCATGCCACCAATGATTCCACTGCAAGTATCATTGCTCGGGCAAAGGGAATGCATA
TCCAGGCTACCCAAAGCCAGGCCAATGGCTATGCTTGGTTTCTGCCGTTCAACATGGTCTTTGAGGACTCCAGGTATATC
CATGCA--------------------------------------------------------------------------
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>chr2B_1186
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-----------------------------------------------------------------------CTATCTTTG
TACCTGCACAAAGTTGTCAGTGGAGCAGCCCACAACCAAGAAGTAATTCTCAGCCCCGGCTTTGTTAATTCGTTTGGTGT
GATGGCAGTTAATGAATGGACTATACATGCCACCAACGATTCCACTGGAAGTATCATTGCTCGGGCAAAAGGAATGCATC
TCCAGGCCACCCAAAACCAGTCCAATGGTTTCGCTTGGTTTCTTCCGTTCTGCATGGTCTTTGAGGATTCCAGGTATATC
CATGCAC--------------GTACCATTTGCAGATTAAACA-ATGGATATTAGTTTTATATTTTTGAGGTTCACCTTTC
CTAATTATAGCTACACCGTTAACAGCTTTCGAGGGTCTACATTACAAGTGATGGGGATAGTCAGTGGTGCG---GATGGT
GAGTGGGCTATTGTGGGTGGGACTGGAAAACTGTCCATGGCGCGTGGTACCATGAAGTTGACCACAGTCCA------GAA
CAGCCCAAACATTGAGAGCTACAAAAAAAATTGATGTCCATGCAGTCTACACAACCCAGCCGACCGTAAGTATTATTAAT
CT------------------------------------------------------------------------------
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>SNPs
SS-S---S-SSSSS----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S-S--S-S-----S-----
--------S-----------------S----SSSS---------S--S-S--S------------------S----S---
-SS-----S---------------S-----S---------S-------------S-----------S-------------
S-S--SSS-----------SS--SSS---S--S---------------S-------------------------------
-----S-----------S--S---S-------------------------------S------------SS-------S-
------S--SSS---------S---S-S---SS-S-----------S-----------------------------SS--
-----------------S---S-------S----S---------------------------S-----------------
-----------------S--S---SSS----S--------S--------S--S---SS-----S--S-----SSS-----
--S---S---S----S-S----S--S-----S--S-----SS-S-----------S-------S-------SSS------
--------------------------S---S------S---S--------S--S-------S----------S-------
--S-----S-S-----SS---------SS---------------------------S-S----------------S-S--
--S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_258
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------------------------------------------------------------------------------GA
TGGTCTACGGCAGCCTAC--------------------------------------------------------------
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>reverse_1970
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-------------------------------------------------CGTGCCAAGTTTTAGCGCAT-----------
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>forward_1739
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---------------------------------------ATGCATTCTACACACCCGCA---------------------
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>reverse_2694
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-----------------------------------------------------TCGACGAACACAAGGCATCA-------
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