>input_sequence_49595
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------------------------------------------------------------ATGACGATCGAGCTGCAGAC
GAGGCCGTCGCTCCCGGCGCCGGCGGGTGCGCCACCGCGCGCGGGCACGGGTCTGCCGCCGGGGTTCCGGTTCTACCCCA
CGGACGAGGAGCTGATCGTGCACTACCTCCGCAGGCGCGCCGCCGCGGCGCCGTGCCCGGCGGCCGTCATCGCGGAGGTG
GACATCTACAAGCTGGACCCCTGGGAGCTCCCGTCCCGCGCGGTGTTCGAGGGCGACAACGACGAGTGGTACTTCTTCAG
CCCCCGCGACCGCAAGTACCCCAACGGCGTTCGCCCCAACCGCGCCGCCGGGTCCGGCTACTGGAAGGCCACCGGCACCG
ACAAGCCCATCACGGCCGGCGGCGTGCCCGGCGGCGAGGTGGTCGGCGTGAAGAAGGCGCTCGTGTTCTACCAGGGGCGT
CCACCCAAGGGCCTCAAGACCAACTGGATCATGCACGAGTACCGCCTCGCCGACGCCCACGCCGCCGCGGCCGCGCACAC
TTACCGGCCGCCCACGCGCTTCAAGGCCTCCTCCTCCATGAGGGTACGTGCTAACGTTCATGCATGTCTCTCTCGGTT--
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-------------------------------------------------CTCTCCATCATTTTGTATCTTCATTTTTTCT
ACTCCTTTAATTCCATGTTTTAATGC-TCTTCTAGATTACGA--------ATCTTTTCTGCGGTTCCAAATGATCGAAG-
--------CGTTCGAGCTAGCTAGGAATCTTTTGCTCTCTTCTTATTATTGGTTGCGTTGCGTGTGTGTGGATGACAGTG
AGTTAAGCTCGACTGCTCGAGCAAGCAACTCAT---------CTGGTCAATGAACTTGGCAGCAACTCACCTTCGTG---
------GTTTCTTTTACCCATGGGATCTTCTTACCCCCAGGAAAGAGACTTGCATTATTACCCTAGCTACAAGCTACATC
CTACTAGCTAAGCTA----CCTGTCAAGCTTAGCAAGCGACTGTTTGTTGCAACATACACGCACACACGTGTGGTACTGA
TTCTCCTT---------GTGCATGCGTGCAGCTGGACGATTGGGTGCTCTGCAGGATCTACAAGAAGCCCAACCCGCAGC
AGCTGTCGCCCTTCTACGAGCCGTCGCCGTCACCGTCGCGGTCGTCCATGGACGCCAGCCTCGGCCTCGGCCACCACCAC
---CACCATCAGTACCACCACCACCAGCAGCAGCAGCAGCAAGAGGACACCTCCTCCTCCTCCCGGATGCTGCCGAGGAA
TCCGTCCGTCTCCGACTACCTCGTGGACTACTCCGCCGTCTCGGAGCTCTTCGACAGCATGCCGCCGCCACCACAGCCGG
AGAC---TGCAAGCTCTGTCGGCCATTTCTTCCTCGGCACCACTGCT---GGCGCCAGCGACGGCGAGGCCAGCACGGCG
CGCAAGAGGCAGGCGACGGCGGACAGCAACAACGATGGTGAAATGTCGTCGTTGCACGCTTCCAAGAGGTGGTTGGGTAG
CGATGGGTCCAT---GACGATGATGAACGGCGGCTTCTCCATATTTGGGCCAGACCAGCCTTCCCAGCAGGACAGGATAT
GA------------------------------------------------------------------------------
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--------------------------------------------------------------
>chr3A_1_TraesCS3A01G078400
CTTGAACCATATGCATATAATAGACTCAAAGAGTATTTTTCATAAATATTATAGTTGTGTCGGTTGTTATACATATATGA
CAATAGAAACTAGTTGTCAAACTTGCATTTTAAAGACCGTGTTAAGTCCAAAAATGCGCCTTTTTATTAAGTTGTGGGAG
TAGCTAGCTGAAATTTCTGTGGACTCAATTACTAAAAATTGCACACTACCAATTCTGAAGTTTCACTCTTGAAATGTGCA
AGTAGAACCTTATTGAACTTTTGAGCTTGCATGGCATATAGTGACA-------TAGATGAGAATGATTAAATCTTGATCT
AAATGCTA----------TGGAGATATTTAAGCAATTCTCAATCAATCAATTAGCAGTAGGGGGGTAGGAGTGTAGACAT
AGCCCATGATTTTCCGATGTTTGCATTCCAGCGATGAATATAATGTTCTCAGATATGTCTCAGCTAGCAGCAGATGACTA
TGCATGTGAATGCATGCATGCATAGGAATATGGAGTCAATGAGAACATACATAAAAACACCTGGTATCCATGTGCTATTC
CTATATATGGTATTCCTGTGGGACCATCAACACTTCCCGGTCCTACAACATCGAGCTTAATATCCATCTTTTCCAATCAT
TTGCACAATTGATTTC-TTCGTCCATTCATTTTGCTCATGTCTTTTTCAGATTTTTCCACTCTCGTTCTCATGTGGCACA
AAAAAGAAAGAAAAGATTCCAACAAATTAAA-GATACTAGCCAAGTGTGAGCACTGATGACGTGACATGGATGGACACGC
ACGTACGGCAGGGCCCTTGCAATCATCATCCCTCTCGTCACCGGCGGCCAAGAATTAC-AGGAGCCTGCCATGCACCGGA
GCACCTCAGCGCCTTTATAACCGTACCCATCGGCTCCACCTCCGAGAATTTCAGTTCTCCTCCGTCTCGACCCACCTTCC
CTTCCCTTCCCCCTCACCCCGCCCTGAGTCTCTGACCGAGCGTTCGGGTTGCCACTTGCCATGACGATCGAGCTGCAGAC
GAGGCCGTCGCTCCCGGCGCCGGCGGGTGCGCCACCGCGCGCGGGCACGGGTCTGCCGCCGGGGTTCCGGTTCTACCCCA
CGGACGAGGAGCTGATCGTGCACTACCTCCGCAGGCGCGCCGCCGCGGCGCCGTGCCCGGCGGCCGTCATCGCGGAGGTG
GACATCTACAAGCTGGACCCCTGGGAGCTCCCGTCCCGCGCGGTGTTCGAGGGCGACAACGACGAGTGGTACTTCTTCAG
CCCCCGCGACCGCAAGTACCCCAACGGCGTTCGCCCCAACCGCGCCGCCGGGTCCGGCTACTGGAAGGCCACCGGCACCG
ACAAGCCCATCACGGCCGGCGGCGTGCCCGGCGGCGAGGTGGTCGGCGTGAAGAAGGCGCTCGTGTTCTACCAGGGGCGT
CCACCCAAGGGCCTCAAGACCAACTGGATCATGCACGAGTACCGCCTCGCCGACGCCCACGCCGCCGCGGCCGCGCACAC
TTACCGGCCGCCCACGCGCTTCAAGGCCTCCTCCTCCATGAGGGTACGTGCTAACGTTCATGCATGTCTCTCTCGGTT--
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-------------------------------------------------CTCTCCATCATTTTGTATCTTCATTTTTTCT
ACTCCTTTAATTCCATGTTTTAATGC-TCTTCTAGATTACGA--------ATCTTTTCTGCGGTTCCAAATGATCGAAG-
--------CGTTCGAGCTAGCTAGGAATCTTTTGCTCTCTTCTTATTATTGGTTGCGTTGCGTGTGTGTGGATGACAGTG
AGTTAAGCTCGACTGCTCGAGCAAGCAACTCAT---------CTGGTCAATGAACTTGGCAGCAACTCACCTTCGTG---
------GTTTCTTTTACCCATGGGATCTTCTTACCCCCAGGAAAGAGACTTGCATTATTACCCTAGCTACAAGCTACATC
CTACTAGCTAAGCTA----CCTGTCAAGCTTAGCAAGCGACTGTTTGTTGCAACATACACGCACACACGTGTGGTACTGA
TTCTCCTT---------GTGCATGCGTGCAGCTGGACGATTGGGTGCTCTGCAGGATCTACAAGAAGCCCAACCCGCAGC
AGCTGTCGCCCTTCTACGAGCCGTCGCCGTCACCGTCGCGGTCGTCCATGGACGCCAGCCTCGGCCTCGGCCACCACCAC
---CACCATCAGTACCACCACCACCAGCAGCAGCAGCAGCAAGAGGACACCTCCTCCTCCTCCCGGATGCTGCCGAGGAA
TCCGTCCGTCTCCGACTACCTCGTGGACTACTCCGCCGTCTCGGAGCTCTTCGACAGCATGCCGCCGCCACCACAGCCGG
AGAC---TGCAAGCTCTGTCGGCCATTTCTTCCTCGGCACCACTGCT---GGCGCCAGCGACGGCGAGGCCAGCACGGCG
CGCAAGAGGCAGGCGACGGCGGACAGCAACAACGATGGTGAAATGTCGTCGTTGCACGCTTCCAAGAGGTGGTTGGGTAG
CGATGGGTCCAT---GACGATGATGAACGGCGGCTTCTCCATATTTGGGCCAGACCAGCCTTCCCAGCAGGACAGGATAT
GATCCATGCTACCTTGATAATTAGGGCTAGGAGAAAGGTAGCTAGCGATTTGACTATTGCCACACTATAGCTAGTTGATT
ATTCACA------GATGCCGATCGATCAATGGATCGTGGGGGATATATATTACTCATGCATAATTTGTAGATCAGGCTAA
ATTAGTACAGTATATATATTGTGTAAAGTTAGTGTAACATACTATTATATAGGCCGGACTAGCTAGAAGAAGAACACAAT
TATCTTCCTAGATAGCTAGAACTGATTGTAGATGCATGTCTAATTTGTGTG--TATGTATATGTAGGGTGAACTAGGGTG
TAAACTGTAAACATTCATTGAATAAAATTCTTATTAAGTTTGAAATTTCTTTCCTTATTTATTGTAACCAAGTCTTGGAC
TTTTGGATGAATCAATTCGAGCATGGAATACTAGCAACTTAGCATGCATGCTTTATGTTAGGGGAAAGAGACGTGCATAA
TTGAAGTGCATGTACTTTAAAATAAAGAGGAGAGAGCAATGGCTTGTCTTTTGTTCTACTCCCAGAAAGGTTGGATTCCT
TGAGAAGTCATCGCACCCAAGGAAAGACGAGTTGATCGAGAGAGACACCCATGTAAATATGTAGACGAACAAGCAATAAG
CTAAGCTAGTTGGGAAAAAGAAGAAGTAAA--AATTATTAG---AAAAAAAGACATATGCTGATATTCCCATGCATGGAC
ACCGATGGAAACTAGTGTGTGTCCCACCTAAGAGT--TCGGCACCACAAAATTCTATGTAGAGCATGAAAACATTTTACT
GGAAAAAGACAAATCCAACTATGAATAGTACCAAAAATCAAATTACAAACACCATTACGGTTCAATTTCTAA-TTTT---
TTTATTTTGCTTCTCCATACGTAGGTTGAATCGTTTTCAGAATTTTACACATTGTACAAACATATCTTATCAACTCACTT
AATATTGTAAGAAAAATGAAAC-CATATAGTGGTGATATTGTGCATTGGCAGCACCGGGAGT
>chr3B_1
CTTGAACCATATGCATATGACAGGCTCAAGGAATA-TTTTCATAAATGTTATAGTTGTGTCT-TTGTTATACATATATGG
CAATAGAAACTAATTGTCAAACTTGCATTTTAAAGATCGTGTTATGTCCAAAAATGCGCCTTTTTGTGAATTGGAGGGGG
TAGCTACCTGAAATTTTTGTGGACTCCGTTACTAAAAATTGCACACTACCAATTCTTAAGTT-CACTCTTGAAGTGTG--
-----AACCTTATTGCACTTTTGAGTTTGCATGCTATATAGTGACATACGGAGTAGATGAGAATGATTAAATCTTGATCT
AAATGGTTAGCAATTTGCTGGAGATATTTAAGCAATTCTCAATCAATTTGTATCTTGT-----------AGTCTAGATAT
CTCCAATGATTTTCCGAGGTTTGCATTCCAGCCATGAATATAATTTTCTTAGATATATCTAGCT----------------
---ATCTGCATGCATGCATGTATAGGAATATGGAGTCAATGCGAACATACATAAAAACACCTGGTATTCATCTGCTATTC
CTATATATGGTATTCCTGTGGGACCATCAACACTTCCCGGCCCTACAACATCGAGCTTAATGTCCATCTTTTCCAATCAT
TTG-ACAACTGATTTTTTTCATCCATTCATTTTGCTCATGTCTTTTTCAGATTTTTCCCA-CTCGTTCTCATGTGGCACA
AAAAAGAAAGAAAAGATTCCAACAAATTAAAAGATTCTAGCCAA--GTGAGCACTGGTGACGTGACACGGATGGACACGC
ACGTACGGCAGGGCCCTTGCATTCATCATCCCTCTCGTCACCGGCGGCCAAGAATTAC-AG-AGCCTGCCATGCACCGGA
GCACCTCC-CGCCTTTATAACCGTACCCATCGGCTCCACCTCGGAAAATTTCAGTTCTCCTCCGTCTCGACCCACCTTCC
CTTCCCTTCCCACTCACCTTGCCCTGAGTCTCTGACGGAGCGTTCGGGTTGTG-------ATGACGATCGAGCTGCAGTC
GAGGCCGTCGCTCCCGGCGCCGGCGGGTGCGCCACCGCGCGCGGGCACGGGGCTGCCGCCGGGGTTCCGGTTCTACCCGA
CGGACGAGGAGCTGATCGTGCACTACCTCCGCAGGCGCGCCGCTGCGGCGCCGTGCCCGGCGGCCGTCATCGCGGAGGTG
GACATCTACAAGTTGGACCCGTGGGAGCTCCCGTCGCGGGCCGTGTTCGAGGGCGACAACGACGAGTGGTACTTCTTCAG
CCCCCGCGACCGCAAGTACCCCAACGGCGTCCGCCCCAACCGCGCCGCCGGGTCGGGGTACTGGAAGGCCACCGGCACCG
ACAAGCCCATCACGGCCGGCGGCGTGCCCGGCGGCGAGGTGGTCGGCGTGAAGAAGGCGCTGGTGTTCTACCAGGGGCGT
CCCCCCAAGGGGCTCAAGACCAACTGGATCATGCACGAGTACCGCCTCGCCGACGCCCACGCCGCCGCCGTCGCGCACAC
CTACCGGCCGCCCACGCGCTTCAAGGCCTCCTCCTCCATGAGGGTACG----------CATGCATGTCTCTCTCCATCTC
TGTTTTGGTAACCGCTCGAGATATTCGGTTACCGCGCGGTTACCACGTTTATCGCTCCCCCACGATAAACACTCATACCG
AGCAAAAAATCCCGATTTTTTTGAAATATTTGAATTCAAACGATCGCCTTGTAGTTAAATAAGCTGCATCTGTGTTTTAA
ACAGAGAACTTATCGTGGCCCAGTGGCAAAAGGTGTTTTATCGCCAGACGTTGGTCGAGGGTTCGACTCGGGCTACGCAC
TGCTTTTTTAAACTTTTAGAGATGCAAAAGTGTTTACCTATGAAAAATTCTGGAGAAGACAGGGATCGAACTCGGGGCGC
CTGAGCAAGGGATAGCTGCGGGTTGAGAGCCACTACGGTAGAACAACCTTACTGACTATTAATAGTTAAAAGCTCATATA
TCTAACTCAAAAAAATTGAATTCAAAATTTGGTTTTAAATTTCGTCCGAATTTTTTTCGGTAATTCGTGGTTACCGAGAA
TCTCGGTGCCCCTCGAGAAAAAAATCTTCACTTGGGATCCAAAACCTTGCTCTCCATCG---------------------
-------TAATTTCATGCTTTATTATTTCTTCTTGATCACACATGCAAGCATGTTTTCTGCGGTTGCAAATGAACGAAGA
AGGCATCTCGTTGGAGCTAGCTAGGAATCTTTTGCTCTCTTCTTATTATTA-----GTTGCGTGTGTGTGGATGTCAGTG
AGTTAAGCTCGA--------GCAAGCAACTCACCCTGGGTCCCTGGTCAATGAACCACT------------GTCCTATTA
GCTATAGTTTCTTTTACCCATGGGATCTTCTTT-CTCCAAGAAAGAGACTTGCATTATCACCCTT----CAACCTACAAC
CTACTAGCTAACCTAGCAGCTACCTGT------CAAGCGACTGTTTGTTGCAACATACACG--------TGTGCTTCTGA
TTTTCCTTCTTGTGTGCGTGCATGCGTGCAGCTCGACGATTGGGTGCTCTGCAGGATCTACAAGAAGCCCAACCCGCAGC
AGCTGTCGCCCTTCTACGAGCCGTCGCCGTCGCC------ATCGTCCATGGACGCCAGCCTCGGCCTCGGCCACCACCAC
---CACCATCAGTACCAGCAGCAGCGACAG---CAGCAGCAAGAGGACACCTCCTCCTCCTCCCGGATGCTGCCGAGGAA
TCCTTCCATCTCCGACTACCTCGTGGACTACTCCGCCGTCTCGGAGCTCTTCGACAGCATGCCGCCCCCACCACAGCCGG
AGACGACTGCAAGCTCCGCCGGCCAGTTCTTCCTCGGCACCACTACTACTGGCGCCGGCGACGGCGAGGCCAGCACGGCG
CACAAGAGGCAGGCGACGGCGGACAGCAACAACGATGGTGAAATGTCGTCGTTGCACGCTTCCAAGAGGTGGTTGGGTAG
CGATGGGTCCATGACGACGATGATGAACGGCGGCTTCTCCATATTTGGACCAGACCAGCCTTCCCAGCAGGATAGGATAT
GATCCGTGCTACCGTGTTAATTAGGGCTAGGAGAAAGCAAGCTAGCGACTTAACTATGGCCACA------CTAGTTGATT
ATTCAC---TATTGATGCCGATCGATCAATGGATCGAGGGGGATA-ATATTACTCATGCATAATTTGTAGATCAGCCTAA
ATTAGCACAG----TATATTGTGTAAAGTTAGTGTAACATATTAT---AGGCCGG---------AGTAGAAGAACACAAT
TATGTCACTAGATAGCTAGAACTGATTGTAGATGCATGTCTAATTTGTGTGTATATGTATATGTAGGGTGAACTAGGGTG
TAAGTTGTGAACATTCATTGAATAAAATTCTTATTA-GTTTCAAATTTCTTTCCTAATTTATTGCAATCAAGTCTTGGAC
TCTTGGATGAATCAATTCGAGCTTGGAATACTAGCAACTTATTATGCATGCTTTATGTTAAGGAAAAGAGACGTGCATAA
TTGAAGTGCAGGTACTTTAAAATAAAGGG--GAGAGCAATGGCTTGTCTTTTGTTCTACTGCCAGAAAGGTTGGATTCCT
TGGGAAGTCATCGCACCCAAGGAAAGACGAGTCGATCGAGAGAGACACCCATGTAAGTATGTAGACGAACACGCAATAAG
CTAAGCTAGTTTGAAAAAAGAATAAGTAAA--AAAACAGTTAGAAAAAAAAGACATCTACTGATATTCCCATGCATGGAC
ACCGATGGAAGCCAGTGCGTGTCTCGCCTAAAAGAGGTCGGGACCACAAAATTCT-------------------------
--AAAAAGACAAATCCAACTATGAATAGTATCAAAAATCAAATTACAAACACCATCATGGTCGAATTTCTATTTTTT---
TTTATTTTGCTTCTTCATACGTAGGTTGAATCGATTTCAGAATTTTACACAATGTACAAACATATATAATTGACCCACTT
AATATTTTAAGAAAAATGAAAATCATAGACTGGTGATATTGTGCATTGGCAGCACCGGGAGT
>chr3D_38
-------------------------------------TTTCATAAATATTATAGTTGTGTCGGTTGTTATACATATATGG
CAATAGAAACTAGTTGTGAAACTTGCATTTTAAAGA-CGTGTTAAGTCCAAAAATGCGCCTTTTTGTGAAGTGGTGGGAG
TAGCTACCTGAAATTTCTGTGGACTCAGTTACTAAAAATTGCGCACTACCAATTCTTAAGTT-CACTCTTGAAGTGTGCA
ATTAGAACCGTATTGCACTTTTGAGCTTGCATTTCATATAGTGACATA-------GATGAGAATGATTAAATCTTGATCT
AAATGCTTAGCAATTTCCTGGAAATATTTAAGCGATTCTCAATCAATTTGTATCTTGT-----------AGTCTAGACAT
CTCCAATGATTTTCCGAGGTTTGCATTCCAGCCATGAATATAATTTTCTTAGATATATCTAGCT----------------
---ATGTGCATGCATGCATGTATAGGAATATGGAGTCAATGAGAACACACATAAAAACACCTGGTATTCATGTGCTGTTC
CTATATATGGTATTCCTGTGGGACCATCAACACTTCCCGGTCCTACAACATCGACCTTAATATCCATCTTTTCCAATCAT
TTG-ACAATTGATTTC-TTCGTCCATTCATTTTGCTCGTGTCTTTTTCAGATTTTCCCACTCTCGTTCTCATGTGGCACA
AAAAAGAAAGAAAAGATTCCAACAAATTAAAAGATTCTAGCCAA--GTGAGCACTGATGACGTGACATGGATGGACACGC
ACGTACGGCAGGGCCCTTGCATTCATCATCCCTCTCGTCACCGGCGGCCAAGAATTACAAG-AGCCTGCCATGCACCGGA
GCGCCTCC-CGCCTTTATAACCGCACCCATCGCCTCCACCTCTGAAAATTTCAGTTCTCCTCCGTCTCGACCCACCTTCC
CTTCCCTTCCCCCTCACCCCGCCCTGAG--TCTGACCGAGCGTTCGGGTTGTG-------ATGACGATCGAGCTGCAGAC
GAGGCCGTCGCTCCCGGCGCCGGCGGGGACGCCACCGCGCGCGGGCACGGGGCTGCCGCCGGGGTTCCGGTTCTACCCCA
CGGACGAGGAGCTGATCGTGCACTACCTCCGCAGGCGCGCCGCCGCGGCGCCCTGCCCGGCGGCCGTCATCGCGGAGGTG
GACATCTACAAGCTGGACCCCTGGGAGCTGCCGTCCCGCGCCGTGTTCGAGGGCGACAACGACGAGTGGTACTTCTTCAG
CCCCCGCGACCGCAAGTACCCCAACGGCGTCCGCCCCAACCGCGCCGCCGGGTCGGGCTACTGGAAGGCCACCGGCACCG
ACAAGCCCATCACGGCCGGCGGCGTGCCCGGCGGGGAGGTGGTCGGCGTGAAGAAGGCGCTCGTCTTCTACCAGGGGCGT
CCACCCAAGGGGCTCAAGACCAACTGGATCATGCACGAGTACCGCCTCGCCGACGCCCACGCCGCCGCCGCCGCGCACAC
CTACCGCCCGCCCACGCGGTTCAAGGCCTCCTCCTCCATGAGGGTACGTAACGTCGTTCATGCATGTCTCTCTCCATCG-
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-----------------------------------------------------------TTTTGTATCTTCATTTTTTCT
ACTCCTTTAATTCCATGTTTTAATGC-TCTTCTAGATTACGA--------ATCTTTTCTGCGGTTCCAAATGATCGAAG-
--------CGTTCGAGCTAGCTAGGAATCTTTTGTTCTCTTCTTATG---A-----GTTGCGTGTCTGTGGATGTCAGTG
AGTTAAGCTCGA--------GCAAGCAACTCG--------CCCTGGTCAATGAACCAGGCAGCCACTCTCCGTCCTATTA
GCTATAGTTTCTTTTACCCATGGGACCTTCTTT-CCCCAAGAAAGAGACTTGCATTATCATCCTT----CAAGCTACAGC
CTACTAGCTAACCTAGCTACCTGTCAAGCATAGCTAGCGACTGTTTGTTGCAACATACATACACGTGT-----GTGCTGA
TTTTCCTTCTTGTGTGCGTGC----GTGCAGCTCGACGATTGGGTGCTCTGCAGGATCTACAAGAAGCCCAACCCGCAGC
AGCTGTCGCCCTTCTACGAGCCGTCGCCGTCGCC------GTCGTCCATGGACGCCAGCCTCGGCCTCGGCCACCACCAC
CACCACCATCAGTACCAGCAGCAGCAGCACCACCAGCAGCAAGAGGACACCTCCTCCTCCTCCCGGATGCTGCCGAGGAA
TCCGTCCGTCTCGGACTACCTCGTGGACTACTCCGCCGTCTCGGAGCTCTTCGACAGCATGCCGCCGCCACCACAGCCGG
AGACGACTGGAAGCTCTGCTGGCCAGTTCTTCCTCGGCACCACTGCT---GGCGCCGGCGACGGCGAGGCCAGCACGGCG
CGGAAGAGGCAGGCGACGGCGGACAGCAACAACGATGGTGAAATGTCGTCGTTGCACGCTTCCAAGAGGTGGTTGGGCAG
CGATGGGTCCAT---GACGATGATGAACGGCGGCTTCTCCATATTTGGGCCAGACCAGCCTTCCCAGCAGGACAGGATAT
GATCCGTGCTACCGTGTTAATTAGGGCTAGAAGAAAGCAAGCTAGCGACTTAACTACAGCCACACACTAGCTAGTTGATT
ATTCACTATTATTGATGCCGATCGATCAATGGATCGAGGGGGATA----TTACTCATGCATAATTTGTAGGTCAGGCTAA
ATTAGTACA----ATATATTGTGTAAAGTTAGTGTAACATATTAT---ATAGGCCGGAGTAGCTAGAAGAAGAACACAAT
TAATA----AGATAGCTAGAACTGATTGTAGATGCATGTCTAATTTGTATGTATATGTATATGTAGGGTGAACTAGAATG
TAAATTGTGAACATTCATTGAATAAAATTCTCATTA-CTTTGAAATTTCTTTCCTTATTTATTGTAACCAAGTCTTGGAC
TTTTGGATGAATCAATTCGAGCTTGGAATACTAGCAACTTATTATGCATGATTTAAGTTAGGGGAAAGAGACGTGCATAA
TTGAAGTGCAGGTACTTTAAAATAAAGAG--GAGAGCAATGGCTTGTCTTTTGTTCTACTGCCAGAAAGGTTGGATTCCT
TAGGAAGTCATCACACCAA--GAAAGATGAGTTGATCGAGAGAGACACCCATGTATGTATGTAGACGAACACGCAATAAG
CTAAGCTAGTTTGAAAAAAGAATAAGTAAAAAAACATTTAG---AAAAAAAGACATCTTTTGATATTCCCATGCATGGAC
ACCGATGGAAGCCAGTGTGTGTCCCACCTAAAAGAGGCCGGGACCACAAAATTCT-------------------------
--AAAAAGACAAATCCAACTATGAATAGTATCAAAAATCAAATTACAAACACTATCACGGTTGAATTTCTATTTTATTTA
TTTATTTTGCTTCTCCATACGTAGGTTGAATCGATTTCAGAATTGTACACATTGTACAAACATATCTTATTGACTCACTT
AATATTTTAAGAAAAATGAAAATCATAGAGTGGTGATATTGTGCATTGGCAGCACCGGGAGT
>chr3B_2797
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--------------------------------------------------------GTATATGTAGGGTGAACTAGAATG
TAAATTGTGAACATTCATTGAATAAAATTCTCATTA-GTTTCAAATTTTGTTCTTTATTTATTGTAACCAAGTCTTGGAC
TTTTGGATGAATCAATTCGAGCTTGGAACACCAGCAACTTATTATGCATGCTTTATGTTAGGGGAAAGAGACGTGCATAA
TTGAAGTGCATGTACTCTAAAATAAAGAG--GAGAGCAATGGCTTGTCTTTTGTTCTACTGCCAGAAAGGTTGGATTCCT
TGGGAAGTCATCGCACCCAAGGAAAGACGAGTCGATCGAGAGAGACACCCATGTAAGTATGTAGACGAACACGCAATAAG
CTAAGCTAGTTTGAAAAAAGAATAAGTAAAAAAAAACAGTTAGAAAAAAAAGACATCTACTGATATTCCCATGCATGGAC
ACCGATGGAAGCCAGTGTGTGTCCCACCTAAAAGAGGTCGGGACAAAAAAGTTCT-------------------------
--AAAAATACAAATCCAACTATGAATAGTATCAAAAATCAAATTACAAACACTATCACGGTTGAATTTCTATTTTTTTAA
TTTATTTTGCTTCTCCATACGTAGGTTGAATCGATTTCAGAATTTTACAAATTGTACAAACATATCTTATTGACTCACTT
AATGTTTTAAGAAAAATAAAAATCATAGAGTGGTGATATTGTGCATTGGCAGCACTGGGAGT
>SNPs
------------------S-S--S-----S--S--S-------------------------------------------S
------------------------------------S----------------------------S-S----S-------
------S--------------------S----------------------------S-----S----------S------
-S-------------S-----------------S----------------------------------------------
-------S---------------------------------------SSS-SSSSS--SSSSSSSSSSS---S-------
SS--S------------S--------------S-----------S----S------S---SSSSSSSSSSSSSSSSSSSS
SSS-----S-----------S----------------------------------------------S------------
--------------------------------------------------------------------------------
---S----------------------------------------------------------------------------
-----------------------------------S--------SS----------------------------------
---------------------S---------------------------------------S------------------
-------SS---------------------------------S--S----------------------------------
---------------------------------------------------SSSSSSSSS--------------------
---------------------------------------------------S----------------------------
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-----------------------------------------S--------------------------------------
------------------------------S-----------------------S-------------------------
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-----------S--------------------------------------------------------S-----------
S------------------------------------------------SSSSS--------------------SS-S--
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----------------------------------------------------------S---------------------
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--------------------------------------------------SSSSSS------------------S-----
------------SSSSSSSS------------S----------------------SS------S----S--S--S-S---
--------------------------------SS-----S------------------S-----SSSSS---------S-
-----------S-----------------S----------------------------------SSSSS------S----
--S------------------------------S----------------------------------------------
-------------------------------S--SSSSSS----------------------------------------
-----------------S--S--S--------S-----------------------------------------------
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------------------S------S------------------------------S-----------------------
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-----S-------S--S--------------------SS---------S--S-----S-------SS-------------
------S-----------------------------S--------S----------------------------------
----------SSS----------------------------S---SSS----------S---------------------
---S-SS-------------------------------------------------------------------------
----S---S---------------------------S-------------------------------------------
----------------------S------------------SS-------------------------------------
-----------------------------SS-----------------------------S-------------------
--S-----------------------------------------------------S--------------S--------
-----------S-S--------S-----------SSS-------------------S-S---------------------
----------S-S------------------S--S------S-------------SSSSSSSSSSSSSSSSSSSSSSSSS
SS----------------------------S------------------------S------S--------S--------
---------------------------------S------------------------------------SS--------
------S--------------S-----S----------------------------------
>forward_433
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-------------CCGATGTTTGCATTCCAGCG-----------------------------------------------
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>reverse_2906
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-------------------------TTTCTTCCTCGGCACCACTG-----------------------------------
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>forward_2392
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----------------------------------------------------AACTTGGCAGCAACTCACCT--------
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>reverse_3683
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--AGAAGTCATCGCACCCAAGG----------------------------------------------------------
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