>input_sequence_49546
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-----------------------------------------------------------------------------ATG
GCCTCGAAGCTCCCCGACGCCACCAAGGGCCTCGGCG---CCGGCGCCATAGACGTCGAGGACGGGAGCGGCGCCGGCGC
TGGTGGGAAGAAGGTGACCGGCAGGTGGCCCGGGTTTGTTCATTTCTTCTTCGTGCTCACCGTCGTCACCTGCGCGCTCG
TCTACGCCCCAAGGTTCCTCTCGCCCACCGTGCCCGTCGACTTCTTGGGGCCGCGGCAGCCGTCG---TCCGGTCGAGCG
GCGGCAGTACAAGGACGGAGCCTG---------------------------GACGCGCTGGTCCTCGACAACCAGGTGAA
CTCCCCGTGCGCGTCCATGGGCGGCCATGGCATCTGCTGCGACCGCTCCGACTTCAACACCGACGTGTGCTTCATGGCCG
GCGACGTGCGCACGGACGCCGCGTCGCTCTCGTTCCTGCTCTTCGCGCCG------CAAGCGCCCAACGGCACCGCCAG-
-----CGCCAACGCGACCGTGGCGGAGAAGGAGGAGCGGGTGCAGCCCTACACGCGCAAGTGGGAAAAGCACCTGATGGC
CAACATCCAGGAGGTGCGGCTCCGCGCGGCCCGGCCGGACGAGGCC---GACGCGCACCGGTGCGACGTGCGGCACGACG
CGCCGGCGCTGGTGATGACGGCGGGCGGGTACACGGGGAACCTGTTCCACGCGTTCAACGACGGGTTCCTGCCGGCGTGG
CTGACGGTGCAGCACCTTCGGCGCCGCGTGGTCCTCGCGGTGCTGGCGTACAACCCGTGGTGGGCCGGCACTTTCCGGGA
GCTCGTGTCGGGGCTCTCGGACCACCACGTGATCGACCTCCTACACGACAAGCGCACGCACTGCTTCCCTGGCGCGATCG
TCGGGACCCGCTTCCACGGCATCCTCGCCGTCGAGCCGGCTCGGACCCGGGACAACCGGACCCTCGTCGACTTCCACGAC
TTCCTCGCCGGCGCGTACAAGGACGAG---------------------------AGCACGCCGGAGCATCAGGAGAAG--
-------------------CCAAGGCGGCGGCCGAGGCTGGGGCTGTACTCGCGCAAGGGGACGCGGGTGATCGAGAACG
AGGCGGCGGTGGCGCGGCTGGCGGAGTCGGTGGGGTTCGACGTGTCCATCCTGGAGACGGCGAACGGCGCGCCGCTGTCG
TCGGAGTACGCGGCGGTGAGCGCGTGCGACGTGCTGGTGGGCGTGCACGGCGCGGACCTGACGAAGCTCCTGTTCCTCCG
GCCGCGCCGCGCCTCGCTCCTGCAGATTGCGCCGCTGGGCGTGCCGCACGTGGCGCGCGGGTGCTACGAGAAGGCGACGG
CCATGATGGAGATGCACTACGAACAGTACGACGCGGCGGCGAACGAGAGCTCGCTGGTGCGCAAGTACCCGGCGGACGAC
GTGGTGCTGCGCGACCCGGAGGCGGCGACGCGCGAGCGCGGGTGGGACCTCACCGCGCGCGTCTACCTCGGTGGCCAGAA
CGTGAGCCTCGACCTGGGCAGGTTCGGCGACACCCTCCGGAGGCTGCACTCCCGCGCCCTGCGGCTGCCGGCCGCCGGGC
CGTAG---------------------------------------------------------------------------
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>chr3D_1_TraesCS3D01G501900
ATCTAGCCCAATACACTAGAA-CCAAACATGATTCTAGGAATAAGGCCCGATTTGCATTTTGGCAGGGATAATCCCTATA
AATCCCTGGAAATACACCTGTAAC-----AAAAAAAGCTCAGAAATGTGTGTGTGAGGGAGAGTCAACTTCC-AGCACCA
AATTAATGTTGTCCGTTTCACCATTTTTTCCTCGATCAATTTCCAATCACATACTATTCGAGGAAGAACGCGTAAAACCA
GCTGGTTGTCAC--------------------------------------------------------------------
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-------------------------------------------------------AATAGGACTCCCCAATTGAACAGCT
TAGTTTGGCACTCACTTACCACCCCAGTCTGG-AAATCAATACGAATGCAGAAACTGCTCAAAAAGCTAAATCTGCATGG
AC-----------------------------------A-GTTCACACTCAAACGCCGGCCGGCCGGCTATCCCTCCATA-
------GTTAGCAAGCTTCCAGTCTTCCTCTATACTACTCCGTATCCTTTATAGATACACACAAGTTTAATT----GCCT
TTTATAAAAAGAATATCTTTTGGGAGAACTAATGCCATTGTATCCTAGTGGTAGTCGACGTAGAATTGTTTCTCTGAATA
TCTAAAAGATATTTTTTTGC----AAATATATATATATATATATATATATATATATATATATATATATATATACACACAC
ACACACGAGGTGTGGCGTGGCCAGTGAGTGTGGTACGTGTAGGCGGCTGGGTGGAGTGTGTGACGCAGAGGAAACTGGTG
TCTGAAGACGAGATGGAAGAAGATAGGTGCAGGTGCCGAATCCAGGCCGAGGCCGGGGACTTCTTCTTCGGACTGTGGAA
CAGAGACCGAGGAAACTGACGCGAGCGTGCGGGCGGGACAAACGGTGGGTCACCTGACAGGAGGAATTCCCGCACGCACA
TCAATGCGCCGCGCCGGCGTGTGCGACTCGTCTCTCGCCGGCCTTTCCTACATAAGCCGACCTGATCAAACCGGGCACGC
GACAAGGGCGACCGCGCGA----------AGCTGCACCCATCCCGTTTCCATTTCTCCAACCGAACGTC-----GGCATG
GCCTCGAAGCTCCCCGACGCCACCAAGGGCCTCGGCG---CCGGCGCCATAGACGTCGAGGACGGGAGCGGCGCCGGCGC
TGGTGGGAAGAAGGTGACCGGCAGGTGGCCCGGGTTTGTTCATTTCTTCTTCGTGCTCACCGTCGTCACCTGCGCGCTCG
TCTACGCCCCAAGGTTCCTCTCGCCCACCGTGCCCGTCGACTTCTTGGGGCCGCGGCAGCCGTCG---TCCGGTCGAGCG
GCGGCAGTACAAGGACGGAGCCTG---------------------------GACGCGCTGGTCCTCGACAACCAGGTGAA
CTCCCCGTGCGCGTCCATGGGCGGCCATGGCATCTGCTGCGACCGCTCCGACTTCAACACCGACGTGTGCTTCATGGCCG
GCGACGTGCGCACGGACGCCGCGTCGCTCTCGTTCCTGCTCTTCGCGCCG------CAAGCGCCCAACGGCACCGCCAG-
-----CGCCAACGCGACCGTGGCGGAGAAGGAGGAGCGGGTGCAGCCCTACACGCGCAAGTGGGAAAAGCACCTGATGGC
CAACATCCAGGAGGTGCGGCTCCGCGCGGCCCGGCCGGACGAGGCC---GACGCGCACCGGTGCGACGTGCGGCACGACG
CGCCGGCGCTGGTGATGACGGCGGGCGGGTACACGGGGAACCTGTTCCACGCGTTCAACGACGGGTTCCTGCCGGCGTGG
CTGACGGTGCAGCACCTTCGGCGCCGCGTGGTCCTCGCGGTGCTGGCGTACAACCCGTGGTGGGCCGGCACTTTCCGGGA
GCTCGTGTCGGGGCTCTCGGACCACCACGTGATCGACCTCCTACACGACAAGCGCACGCACTGCTTCCCTGGCGCGATCG
TCGGGACCCGCTTCCACGGCATCCTCGCCGTCGAGCCGGCTCGGACCCGGGACAACCGGACCCTCGTCGACTTCCACGAC
TTCCTCGCCGGCGCGTACAAGGACGAG---------------------------AGCACGCCGGAGCATCAGGAGAAG--
-------------------CCAAGGCGGCGGCCGAGGCTGGGGCTGTACTCGCGCAAGGGGACGCGGGTGATCGAGAACG
AGGCGGCGGTGGCGCGGCTGGCGGAGTCGGTGGGGTTCGACGTGTCCATCCTGGAGACGGCGAACGGCGCGCCGCTGTCG
TCGGAGTACGCGGCGGTGAGCGCGTGCGACGTGCTGGTGGGCGTGCACGGCGCGGACCTGACGAAGCTCCTGTTCCTCCG
GCCGCGCCGCGCCTCGCTCCTGCAGATTGCGCCGCTGGGCGTGCCGCACGTGGCGCGCGGGTGCTACGAGAAGGCGACGG
CCATGATGGAGATGCACTACGAACAGTACGACGCGGCGGCGAACGAGAGCTCGCTGGTGCGCAAGTACCCGGCGGACGAC
GTGGTGCTGCGCGACCCGGAGGCGGCGACGCGCGAGCGCGGGTGGGACCTCACCGCGCGCGTCTACCTCGGTGGCCAGAA
CGTGAGCCTCGACCTGGGCAGGTTCGGCGACACCCTCCGGAGGCTGCACTCCCGCGCCCTGCGGCTGCCGGCCGCCGGGC
CGTAGCTGGCTG---GCTGGTTCGATATGTGCGTCGCCGATCAGACGCCGACGAGCTGGTGCATTCTAATGGAGGGTAGG
TCCGGCGGCCGCGGCCGGCGCACGTT-CGTACGTGACAGGGCGCTGGATCGATCGCAACCATTTTGTTGGACTCTTGTTC
GACAGCACAGACCACACAATGTGTTTTGTTTATTTGTTTTGTTTTGTTTGTGCACAAAAGACCATATATAAT-CCGTCGA
ATACTCTGATGACAAGACTTTGTTTTTTGTTTG--TACATATGGTTCGA-------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------TGTCTCGAAATATAGACAGTCTG
--GTGATGACATACACAACGGCATGCACTGCTAGTGCCAGGCCAGCCGTGGTGTGGCCTGGCCGCCGGCCGGCACGGCGC
GGCGCGGCGTGCCGCGTGCAGGCACCAGCGGCATATACTACATATATGGAACTAAATGT-TCCATGCGTTATGCCTCTGT
CTTGAGTCTTGACAAGGCCAGGGCGGCAGATCTAATGTTTATTTTCTCTACTTCTCACGAAAATATTTAGGAGTACAATT
GATTCACGCGCTGGAAAAACAATGATATGC---CGTATTGTGCAGAGTTGTCGCTGCAAACA-----AGTATCGTTCGCA
GATCATCGTGCAGAAGCATCGTCCATCGGTTTGTTTGATTGAACG--AAGAGTAGTATTTCGCTG----------TACAA
ACCCAGACCAACTTCTGAAAAAACCCAGACCA----AAGGAACATACTATGTGCAGGAAGTGGACCTGCATCCATTTGAT
ATA-GT----CGGCCGGCGTCGACGGAGTTTGAACAGCGGGTGGGAGAAGTTTCTTAGGCAGGC-----ACGGGGTTGAG
TTGAACGGTGGATACGTGCCGCTGCAGTTGACATGGACATGATCC---AGTCCAGCAGCGCGGGCCCTGTGGTACGAGAA
TGACATTGAACTGTGCACCCGACGGCGACAACGCAGCCACGGAGCCACCTGTTGACGAGGG---CATCTGCCTTCCTCTG
TCCCTCTTCAGAGAGGAAGTACC
>chr3A_3
--CTAGCCCAATACACTAGAAACCAAAAATGATTCTAGGAATAAGCGGCGTTTTGCTTTTTAGTAGGGATAATCATTATA
AATCCCTGGAAATACACTAGTAACCAAAAAAAAAAGCCCCAGAAATGTGTGTGTGAGGGATAGTCCAACTCCGAGCACCA
AATTAATGTTGCCCGTTTCACCATTTTTTCCTCAATCAATTTCCAATCACATACT-------------------------
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--------------------------------------------------------------------ATTCGAGGAAGA
AGGCGCAAAACCAGCTGGTTGTCAATGGCTGCTTGTTATAGCC-TGTTCTGTCATACTAAAACTCCCCAATTGGACAGCT
TAGTTTGGCACTCACTTACCACCCCAGCCTGGAAAATCAATACGAATGCAGAAACTGCTAAAAATGCTAAATGTGCATGG
AGAGCACATAGGAAATGGATTTGACCATCGTATGCATACGTTCACACTCAACCGCCGCCCGGCCGGCTATCCCTCCATAC
TCCATAGTTAGCAAGCTTCCAATCTTGCTCTATACTACTCCATATCCTTTTTAGATATGCACAAGTTTAATTAATTGCCT
TTTATAAAAAGAATATCTTTTGGGAGAACTAATGCCATTGTATCCCACTGGTAGTAGACGTAGAATTGTTTATCTGAATA
TCCAAAAGATATTTTTCGCAAAATA-----ATACATATCTAAAAGGTATATAGTACAACGAGATGTGTGGT---------
--------------------------------GTACGTGTAGGGGACTGGGTGGAGCGTGTGACGCAGCGGAAACTGGTC
TCTGAAGACGAGATGGAAGA---TAGGTGCAGGTGCCGAATCCAGGCCGAGGCTGGGGACTTCTTCTCTGTGGGAGAAAC
TGACGCGG------------GCGAGCGGGCGGGCGGGACAAACGGTGGGTCACCTGACAGGAGGAATTCCCGCACGCACA
TCAATGCGCCGCGCCGGCGTGTGCGACCCGACTCTCGCCGGCCTACATAAGCCGCG-CGACCTGATCAAACCGGGCACGC
GACAAGGGCGACCGCGCGA----------AGCTGCACCCATCCCGTTTCCATTTCTCCAACCGAACGCC-----GGCATG
GCCTCGAAGCTCCCCGACGCGGCCAAGGGCCTCGGCGCCGGCGGCGCCTTGGACGTCGAGGACGGGAGCGGCGGCGGC--
-------AAGAAGGTGGCTGGCAGGTGGCCCAGGTTCGTCCACTTCTTCTTCGTCCTCACCGTCGTCACGTGCGCGCTCG
TCTACGCGCCGCGGTTTCTGTCGCCCACCGTGCCCGTCGACTTCTTGGGGCCGCGGCAGCCGTCG---TCCGGTAGAGCG
GCGGCAGTACAAGGACGGAGCGTCGACGGTGGCCGAGGAGGCAATGAGGGCGACGCGCTGGTCCTCGACAACCAGGTGAA
CTCCCCGTGCGCGTCGATGGGCGGCCATGGCATCTGCTGCGACCGCTCCGACTTCAACACCGACGTGTGCTTCATGGCCG
GCGACGTGCGCACGGACGCCGCGTCGCTCTCGTTCCTGCTCTTCCCGCCG------C------CCAACGGCACCGCCAG-
-----CGCCAACGCCACCGTGGGGGAGAAGGAGGAGCGGGTGCAGCCCTACACGCGCAAGTGGGAGAAGCACCTGATGGC
CAACATCCAGGAGGTGCGGCTCCGCGCGGCCCGGCCGGACGAGGCCCAGGACGGGCACCGGTGCGACGTGCGGCACGACG
CGCCGGCGCTGGTGATGACGGCGGGCGGGTACACGGGCAACCTGTTCCACGCGTTCAACGACGGGTTCCTGCCGGCGTGG
CTCACGGTGCAGCACCTCCGCCGCCGCGTGGTCCTCGCGGTGCTCGCATACAACCCGTGGTGGGCCGGCACGTTCCGGGA
GCTCGTGTCGGGCCTATCGGACCACCACGTGATCGACCTCCTACACGACAAGCGCACGCACTGCTTCCCCGGCGCGATCG
TCGGGACGCGCTTCCACGGCATCCTCGCCGTCGAGCCGGCCCGGACCAAGGACAACCGGACCCTCGTCAACTTCCACGAC
TTCCTCGCCGGCGCGTACAAGGACGAC---------------------------AGCACGCCGCCGGAGGCCAATCAGCA
GCAGCAGC---AGCAGCAACCAAGGCGGCGGCCGAGGCTGGGGCTGTACTCGCGCAAGGGCACGCGGGTGATCGAGAACG
AGGCGGCGGTGGCGCGGCTGGCGGAGTCGGTGGGGTTCGACGTGTCCATCCTGGAGACGGCGAACGGGGCGCCGCTGTCG
TCGGAGTACGCGGCGGTGAGCGCGTGCGACGTGCTGGTGGGCGTGCACGGCGCGGACCTGACCAAGCTGCTGTTCCTCCG
CCCGCGCCGCGCCGCGCTCCTGCAGATTGCGCCGCTGGGCGTGCCGCACGTGGCTCGCGGGTGCTACGAGAAGGCGACGG
CCATGATGGAGATGCACTACGAGCAGTACGACGCGGCGGCGAACGAGAGCTCGCTGGTGCGCAAGTATCCGGCCGACGAC
GTGGTGCTGCGCGACCCGGAGGCGGCGACGCGCGAGCGCGGGTGGGACCTCACCGCGCGCGTGTACCTCGGCGGCCAGAA
CGTGAGCCTCGACCTGGGCCGGTTCGGGGACACCCTGAGGAAGCTGCACTCCCGCGCCCTCCGGCTGCCCGCGGCCGGCC
CGTAGCTGGCTG---GTTGGTTAGATATGTGCGTCGCCGATCAGTCGCCGACGAGCTGCTGCATGCTAGCCGAGGGGAGG
ACCGGCGGCCGCGGCCGGCGCACGTTGCGTACGTGAGAGGGCGCTGGATGGATCGCAACCGTTTTGTTGGACTCTTGTTG
GACAGCACAGACTACACAATGTGTTTTGTATATTTGTTTCGTTTTGTTTGTGGACAAGTTAAAGTCCATTTAACCGTCGA
ATACTCCGATGAAAATACCTTGTTTTTTGGTTGTATATATATGGTTCGT-------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------TGTCTCGAAATATAG--------
----------------------------------TGCCAGGCTAGCCGTGGTGTGGCCTGGGCGCCGGCCGGCA-----C
GGCGCGGCGTGCCGCGTGCAGGCAGCTGGCGGCACGC---CACATATGGAACTAACTATGTTCATGCGCTATGCCCCTGC
GTTGAC------CAAGGCCAGGGCGGCAGAACTAACGTTTATTTACTCTACTTCTCGCACAATGATTGA-----------
----------------------------------GTAACGTGCAGAGCTGTTGCTGCAAACAAAACAAGTATCGTTGGCA
GATCATCGTGCAGAGGCATCGTCCATCCGTTCGTTTGATTGGACG--AAGAGTAGTATTTCGTTCGCTGTACAACTACAA
ACCCAGACT------------------GACCA----AAGGAACATACCATGTGTAGGGAGTGGACCTTCGTGCATTTGAT
ATA-GTCGACCGGCCGGCGTCGACGGAGTTTGAACAGCGGCTGGGAGAAGTTTCTTAGGCAGGCCAGCGACGGGGTTGAG
TTGAACGGTGGATACGTGCCGATGCAGTTGACATGGACTTTGATCGAGAGTCCAGCCGCGCGGGCCATGTGGTACGAGAA
TGACATGGAACTGTACATCCGACGGCGACGACGCAGCCAC--------CTGTTGACGAGAGCACCATCTGCCTTCCTCTG
TCCCTGTTCAGAGAGGAAGTACC
>chr3B_241
GTCACAATAAGACTCCCCAATTGAACAGCTTAGTTTGGCACTCAATTACTACCCCAGTCTGGAAACAAATACGAATGCAG
AAACTGATCAAAAAGCTAAATCTGCATGGACAACACACAGGAAAAAGATTTGACCACCGCATCTTTTTTCTCCATGGGGA
GGGGAGCGGGTCGAACCCCCGCTGTTTCACTTTTTTTTGCTACATGTGAGTTCACGGCTACAAAACAAATAGTTATCGTG
AGAGAAGAGGGGATAAATTATACATCACAACACTATTTGACACAATCTAAGCGTTTAAAATCAAACTCATATGGAATTTT
TGAACAATAGCATTGTTTCTCAGGGATCAACGAGAATTTTGGTAACTGATAGATTCCGGAAATCCGGACATGGAAAAAAA
ACTTCATAGCGGAACTCCCAACTCGTTCTATACATATCAACCCACCTCGCCCATGTCACCCTAACCACTGACTCCATTGC
AATTCCCTGCTGCACCTTAGCAAATCAATGTGTGTGTCACCCCTCGTCTTAATTCTACCGCATCTTCGGCAATAATTTTT
TACTTCCGCACCGCGTTGGCGTAACCTTTTCCACAGTCATTCGCAAAGCCCGCCGGCTCACCTTGGTTGTCCCAGCCTAC
CACAATCCACATGTCTAGTACTCTCAAATACCTAACCCTTGCCGGAGAGGAGGGGGGGGGGGGTCTTAGTCGACCATTCT
CCCACGGCCTCATGTTCCTTTTCTCTTTCTTTCTTTCTTTTCACGATTCGAATTGTCCGTCGAGGCCCAAGAAAGCCGCC
CTACTAAGGCCCTATATGGTACTAGAGGTTTTGTGGGGATTGGTGGGGAAATCCCCACAAGGATTGGGTGCCCAAGTCCC
CGTGAAACCGCAACCCCCAATCCAGTAGGTAGGGTTAGTGTACTGGGTATTGGGAAAAATGCACTAGGATATAGGGGAAA
TTAGGGGGAGAAAAGGATAAACTAGCCCAGCACACTAGAAGCAAACATGATTCTAAGAATAAGGGGCGATTTGCTTTTTG
GTAGGGATAATCCTTATAAATCCCTGGAAACACACTAGTAACCAAAAAAAGCCTCAGAAATGTGTGTGTGTGAGGGAGAG
TCCAACTCCGAGCACCAAATTACTGTTGTCCGTTTCGCCATTTTTTCCTCAATCAATTCTCACATAGCATTTGAGGAAGA
ACGCGTAAAACCAGTTGGTTGTCAATAGCTTCCTGCTATAGCATTGTGCCGTCACAATAAGACTCCCCAATTGAACAGCT
TAGTTTGGCACTCACTTACCACCCCATTCTGG-AAATCAATACGAATGCAGAAACTGCTCAAAAAGCTAAATCTGCATGG
ACAACACACAGGAAAAAGATTTGACCACCGTATGCATA-GTTCACACTCAACCGCCGGCCGGCCGGCTATCCCTCCATCT
---ATAGTTAGCAACCTTCCAATCTTCCTCTATACTACTCTGTATCCTTTTTAGATATACACAAGCTCAATTAATTGCCG
TATATAAAAAGAATATCTTTTTGGAGAACTAATACCATTGTATCCTAGTGGTAGTAGAAT-----TTGTTTCTCTGAATA
TCTAAAAGATATTTTTCGCAAAAGAAATATATATATATCTAAAAGATATATACCACGAGGT-------------------
-----------------------GTGAGCGTGGTACGTGTAGGCGACTGAGTGGAGCGTGTGACGTAGAGGAAACTGGTC
TCTGAAGACGAGATGGAAGA---TAGGTGCAGGTGCCGAA------CCCAGGCTGGGGACTTGTTCTCCGGACTGCGGAA
GAGAGAGCGAGGAAACTGACGCGAGCGTGCGGGCGGGACAAACGGTGGGTCACCTGACAGGAGGAATTCCCGCACGCACA
TCAATGCGCCGCGCAGGCGTGTGCGACTCGTCTCTCCTCTCGCCGGCCTACATAAGCCCACCCGATCAAACACGCGG---
---------------GCGA----------AGCTGCACCCATCCCGTTTGCATTTCTCCAACCGAACGGCGGCAAGGCATG
GCCTCGAAGCTCCCCGACGCGACCAAGGGCCTCGG---CGCCGGCGGCATGGACGTCGAGGATGGGAGCGGTGGCGGCGG
TGGTGGTAAGAAGGTGGCCGGCAGGTGGCCCGGGTTCGTTCATTTCTTCTTCGTGCTCACCGTCGTCACGTGCGCGCTCG
TCTACGCCCCGCGCTTCCTCTCGCCCACCGTGCCCGTCGACTTCTTGGGGCCGCGCCAGCCGTCG---TCCGGTAGACTC
CCCGTGC------------GCGTCGACGGTGGCCGC---GGCAATGAAGGCGACGCGCTGGTTCTCGACAACCAGGTGAA
CTCCCCGTGCGCGTCGATGGGCGCCCACGGCATCTGCTGCGACCGCTCCGACTTCAACACCGACGTGTGCTTCATGGCCG
GCGACGTGCGCACGGACGCCGCGTCGCTCTCCTTCCTGCTCTTCCCGCCG------CAAGCGCCCAACGGCACCGCCAAG
G---ACGCCAACGCCACCGTGGCGGAGAAGGAGGAGGTGGTGCGGCCCTACACGCGCAAGTGGGAGAAGCACCTGATGGC
CAACATCCAGGAGGTGCGGCTCCGCGCGGCCCGGCCGGACGAGGCCCAGGACGGGCACCGGTGCGACGTGCGGCACGAGT
CGCCGGCGCTGGTGATGACGGCGGGCGGGTACACGGGGAACCTGTTCCACGCGTTCAACGACGGGTTCCTGCCGGCGTGG
CTCACGGTGCAGCACCTCCGCCGCCGCGTGGTCCTGGCCGTGCTCGCGTACAACCCGTGGTGGGCCGGCACGTTCCGGGA
GCTCGTGTCGGGGCTCTCGGACCACCACGTGATCGACCTCCTACACGACAAGCGCACGCACTGCTTCCCTGGCGCGATCG
TCGGGACGCGCTTCCACGGCATCCTCGCCGTCGAGCCGGCTCGGACCAAGGACAACCGCACCCTCGTCGACTTCCACGAC
TTCCTGGCCGGCGCGTACAAGGACGAC---------------------------AGCACGCCGCCGGAGGCCAAGCAGCA
GCAGCAGCAGCAGCAGCAACCGAGGCGGCGGCCGAGGCTGGGGCTGTACTCGCGCAAGGGCACGCGGATGATCGAGAACG
AGGCGGCGGTGGCGCGGCTGGCGGAGTCGGTGGGGTTCGACGTGTCCATCCTGGAGACGGCGAACGGGGCGCCGCTGTCG
TCGGAGTACGCCGCGGTGAGCGCGTGCGACGTGCTGGTGGGCGTGCACGGCGCCGACCTGACCAAGCTGCTCTTCCTCCG
GCCGCGCCGCGCCGCGCTCCTGCAGATTGCGCCGCTGGGCGTGCCACACGTGGCGCGCGGCTGCTACGAGAAGGCGACGG
CCATGATGGAGATGCAGTACGAGCAGTACGACGCGGCGGCGAACGAGAGCTCGCTGGTCCGGAAGTACCCGGCGGACGAC
GTGGTGCTGCGCGACCCGGAGGCGGCGACGCGCGAGCGCGGGTGGGACCTCACCGCGCGCGTGTACCTCGGCGGGCAGAA
CGTGAGCCTCGACCTGGGAAGGTTCGGCGACACGCTCAGGAGGCTGCACTCCCGCGCCCTGCGGCTGCCGGCGGCCGGGC
CGTAGCTGGCTGCTGGCTGGTTAGATATGTGCGTCGCCGATCAGTCGCCGACGAGCTGCTGCATGCTAATCGAGGGTAGG
TCCGGCGGCCGCGGCCGGCGCACGTCGCGTACGTCACAGGGCGCTGGGTCGATCGCAACCGTTTTCTTGGACTCTTGTTC
GACAGCACAGACTACACAATGTGTTTTGTATATCTGTTTTGTTCTGTTTGTGGACAAGTTAAAATCCATTTAACCGTGGA
ATACTCCGATGAAAATAACTTTTGTTGTTTGTGGTCCCCCCTTTCTAAATACTCAGTTTGTCTTTCTAGATATTTCAACA
AGTGACTACATACGGAGCAAAATGAGTGAATCGACATTTTAAAATATATCTATATACATCTGTATATGATTGTCCATTTA
AAATCTTTAAAAGAACAAATATTTAGGAAAGGAGGGAGTAGTACATATTATGGTTCGTGTCTCGAAATAAGAACAGTCTC
TTGTGATGACACACGCAACGGCATGCACTGCTCGCGCCAGGCCAGCCGTGGCGTGGCCTGGGCGCCGGCCGGCA-----C
GGCGCGGCGTGCGGCGTGCAGGCAGCTGGCGGCATACTAACACATGGAACCGA----ATGTTCATGCGTTATGCCCCTGC
CTTGA--------------------------CTAATGTTTATGTTCTCTAATTGTCACGAAAATATA------TACAATT
GATCCACGCGCTGGAGGAATAATGATTGGCGGACGTAACGTGCAGAGCTGTTGCTGCAAACAA-----GTATCGTTGGCA
GATCATCGTGCAGAAGCATCGTCCAACCGTTTGTTTGAACGAAGAGTAACAGTAGTATTTCGCTG----------TACAA
ACCCAGACT------------------GACCAAATTAAGGAACATACCATGTGTAGGAAGTGGACCTGCGTGCATTTGAT
AAAGGT----CGGCCGGCGTCGACGGGGTTTGAACAGCGGATGGGAGAACTTTCTTAGGCGGGC-----ACGCGGTTGAG
TTGAACGGTGGATACGGGCCGCTGCAGTTGACATGGACATGATCGGAGGGTCCAGCAGCGCGGGCCATGTGGTACGAGAA
TGACATGGAACTGTGCATCCGACGGCGACAACGCAGCCAC--------CTGTTGACGAGGGCATCT----CCTTCCTCTG
TCCCTGTTCAGAGAGGAAGTACC
>chr3B_905
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----------------------------------------------CCTACATAAGCCGACCTGACCAAACACGCGG---
---------------GCACGCCAACGCAGAGCTGCACCCATCCCGTTTCCATTTCTCCAACCGAACGCC-----GGCATG
GCCTCGAAGCTCCCCGACACGACCAAGAGCCTCGG---TGCCGGCGCCATGGACGTTGACGACGGCAGCGGCGGCGGCGG
C---GGCAAGAAGGCGGCTGGTAAGTGGCCGGGCTTCGTCCACTTCTTCTTCGTCCTCACCGTCGTCATGTGCGCGCTCG
TCTACGCCCCGCGTTTCCTGTCGCCCGCCGTGTCCGTCGACTTCTTGGGGCTGCGCCAGCCGGCA---TTGGGTAGAGCG
GCTGAAGGACAAGGACAGGGCGTGCACGGCGGCCGC---GGCAATGAGGGCGACGCGCTGGTCCTCGACAACCAGGTGGG
CTCCCCGTGCGCGTCGATGGGAGGCCATGGCATCTGCTGCGACCGGTCGGACTACAACACCGACGTGTGCTTCATGGCCG
GCGACGTGCGCACGGACGCCGCGTCCCTCTCGTTCCTGCTCTTCCCGCCGCATGCAC------CCAACGGCACGGCCAG-
-----CGCCAACGCCACCGTGGCAGAGAAGGAGGAGGTGGTGCGGCCCTACACGCGCAAGTGGGAGAAGGGCGTGATGGC
GAACATCCAGGAGGTGCGGCTCCGCGCGGCCCGGCCGGACGAGGCC---GACGCGCACCGGTGCGACGTGCGGCACGACG
CGCCGGCGCTGGTGATGACGGCGGGCGGGTACACGGGGAACTTGTTCCACGCGTTCAACGACGTGTTCCTGCCGGCGTGG
CTCACGGTGCAGCACCTCCGCCGCCGCGTGGTCCTGGCCGTGCTGGTGTACAACCCGTGGTGGGCCGGCACGTTCCCGGA
GCTCGTGTCCGGGCTCTCGCGCCACCACGTGATCGACCTCCTGCACGACAAGCGCACGCACTGCTTCCCGGGGGCCATCG
TGGGGACCCGCTTCCACGGCATTCTCGAGGTCGACCCGGCTCGGACCCGGGACAACCGGACCCTCGTCGACTTCCACGAC
TTCCTCGCCAGCGTATACAGGGACGACGGCGCGT---CGGAAGAACTAGTGCACACCACGGCGCCGGCGCCCCAGCAGCA
------------------------GCGGCGGCCGAGGCTGGGGCTGTACTCGCGCAAGGGGACGCGGGTGATCGAGAACG
AGGCGGCCGTGGCGCGCCTGGCGGAGTCGGTGGGGTTCGACGTGTCCATCCTCGAGACGGCGAACGGGGCGCCGCTGTCG
TCGGAGTACGCGAGGGTGAGCGCGTGCGACGTGCTGGTGGGCGTGCACGGCGCGGACCTGACCAAGCTGCTCTTCCTCCG
GCCGGGCCGCGCCGCGCTGCTGCAGGTGGCGCCGCTGGGCGTGCCGCCGGTGGCGCGCGGGTGCTACGAGAAGGCGACGA
CCATGATGGAGATGCAGTACGAGCAGTACGACACGGCGGCGAACGAGAGCTCGCTGGTCCGGAAGTACGCGGCGGACGAC
GTGGTGCTGCGCGACCCGGAGGCGGCGAAGCGGGAGGGCGGGTGGGACCTCATCGCGCGCGTGTACCTCGGCGGCCAGAA
CGTGAGCCTCGACCTGGACCGCTTCGGCGACACCCTGAGGAGGCTGCACTCCCGCGCCCTCCGGCTGTCGGC--------
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>chr3D_958
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-----------------------------AGCTGCACCAATCCCGTTTCCATTTCTCCAACCGAACGTC-----GGCATG
GCCTCGAAGCTCCCCGACACGACCAAGAGCCTCGG---TGCCGGCGCCATGGACGTTGAGGACGGCAGCGGCGGCGGCGG
C------AAGAAGGTGGCTGGTAAGTGGCCGGGCTTCGTCCATTTCTTCTTCGTTCTCACCGTTGTCATGTGCGCGCTCG
TCTACGCGCCGCGCTTCCTGTCGCCCGCCGTGCCCGTCGACTTCTTGGGGCCGCGCCAGCCGTCGCCGTCCGGTAGAGCA
GCCGCAGTACAAGGACGGAGCGTGCACAGTGGCCGC---GGCAATGAGGGCGACGCGCTGGTTCTCGACAACCAGGTGAA
CTCCCCGTGCGCGTGGATGGGCAGCCATGGCATCTGCTGCGACCGCTCGGACTACAACACCGACGTGTGCTTCATTGCCG
GCGACGTGCGCACGGACGCCGCGTCCCTCTCGTTGCTGCTCTACCCGCCGC------------CCAACGGCACCGCCAAC
GCCAACGCAAACGCTACCGTGGCGGAGAAGGAGGAGGTGGTGCGGCCCTACACGCGCAAGTGGGAGAAGGGGGTGATGGC
CAACATCCAGGAGGTGCGGCTCCGCGCGGCCCGGCCGGAGGAGGCC---GACGCGCACCGGTGTGACGTGCGGCACGACG
CGCCGGCGCTGGTGATGACGGCGGGCGGGTACACGGGGAACCTGTTCCACGCGTTCAACGACGGTTTCCTGCCGGTGTGG
CTGACGGTGCAGCACCTCCGCCGCCGCGTGGTCCTGGCCGTGCTGGAGTACAACCCGTGGTGGGCCGGCACGTTCCCGGA
GGTCGTGTCGGGGCTCTCGCGCCACCACGTGATCGACATCCTGCACGACAAGCGCACGCACTGCTTCCCGGGGGCCATCG
TGGGGACCCGCTTCCACGGCATTCTCGAGGTCGACCCGGCTCGGACCCGGGACAACCGGACCCTCGTCGACTTCCACGAC
TTCCTTGCCGGCGCGTACAAGGACGACGGCGCGTACTCGGAA------GTGCACACCACGGCGCCGGCTCCCCGGCAGCA
------------------------GCGGCGGCCGAGGCTGGGGCTGTACTCGCGCAAGGGGACGCGGGTGATCGAGAACG
AGGCGGCGGTGGCGCGGCTGGGGGAGTCGGTGGGGTTCGACGTGTCCGTCCTGGAGACGGCGAACGGGGCGCCGCTGTCG
TCGGAGTACGCGAGGGTGAGCGCGTGCGACGTGCTGGCGGGCGTGCACGGCGCGGACCTGACCAAGCTGCTCTTCCTCCG
GCCGGGCCGCGCCGCGCTGCTGCAGGTGGCGCCGCTGGGCGTGCCGGCCGTGGCGCGCGGCTGCTACGAGAAGGCGACGA
CCATGATGGCGATGCACTACGAGCAGTACGACGCGGCGGCGAACGAGAGCTCGCTGGTCCGGAAGTACGCGGCGGACGAC
GTGGTGCTGCGCGACCCGGAGGCGGCGACGCGCGGGCGCGGGTGGGACCTCATCGCGCGCGTGTACCTCAGCGGCCAGAA
CGTGACCCTCGACCTCGACCGGTTCGGCGACACCCTGAGGAAGCTGCACGCTCGCGCCCTGCGGCTGCCGGTGGGAGGTC
CGTAGCTGGTTG---GATGAGC------------CGCCGATCGGTCGCCCACGAGCTGCTACATGCTAATCGAGAGCAGG
TCCGGGAGCCGCGGCCGGCGCACATTGCGTACGTGACAGGGCGCTGGAT----CGCAACCATTTTGTT------------
--------------------------------------------------------------------------------
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>chr3A_958
--------------------------------------------------------------------------------
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-----------------------------AGCTGCACCCATCCCGTTTCCATTTGTCCAACCGAACGTC-----GGCATG
GCCTCGAAGCTCCCCGACACGACCAAGAGCCTCGG---TGCTGGCGCCATGGACGTTGAGGACGGCAGCGGCGGCGGCGG
C------AAGAAGGTGGCTGGTAAGTGGCCAGGCTTCGTCCACTTCTTCTTCGTCCTCACCGTCGTCATGTGCGCGCTCG
TCTACGCCCCGCGTTTCCTGTCGCCCGCCGTGTCCGTCGACTTCTTGGGGCTGCGCCAGCCGGCA---TTGGGTAGAGCA
GCGGAAGGACAAGGACAGGGCGTGCACGGCGGCCGC---GTCAATGAGGGCGAGGCGCTGGTCCTCGACAACCAGGTGGG
CTCCCCGTGCGCGTCCATGGGAGGCCATGACATCTGCTGCGACCGCTCGGACTACAACACCGACGTGTGCTTCATGGCCG
GCGACGTGCGCACGGACGCCGCGTCCCTCTCGTTGCCGCTCTACCCGCCGC------------CCAACGGCACCGCCAAC
GCCAACGCCAACGCTACCGTGGCGGAGAAGGAGGAGGTGGTGCGGCCCTACACGAGCAAGTGGGAGAAGGGCGTGATGGC
GAACATCCAGGAGGTGCGGCTCCGCGCGGCCCGGCCGGACGAGGCC---GACGGGCACCGGTGCGACGTGCGGCACGACG
CGCCGGCGCTGGTGATGACGGCGGGCGGGTACACGGGGAGCCTGTTCCACACGTTCAACGACGGGTTCCTGCCGGCGTGG
CTGACGGTGCAGCACCTCCGCCGGCGCGTGGTCCTTGCCGTGCTCGTGTACAACCCGTGGTGGGCCGGCACGTTCCCGGA
GCTCGTGTCCGGGCTCTCGCGCCACCACGTGATCGACCTCCTGCACGACAAGCGCACGCACTGCTTCCCGGGCGCCATCG
TGGGGAGCCGCTTCCACGGCATTCTCGCCGTCGACCCGGCTCGGACCCGGGACAACCGGACCCTGGTCGACTTCCACGAC
TTCCTCGCCGGCGCGTACAAGGACGATGGCGCGA---CGGAA------CCGCACACCACGTCGCCGGCGCCCCAGCAGCG
GC---------------------GGCGGCGCCCGAGGCTGGGCCTGTACTCGCGCAAGGGCACGCGGGTGATCGAGAACG
AGGCGGCGGTGGCGCGGCTGGCGGTATCGGTGGGGTTCGACGTGTCGATCCTGGAGACGGCGAACGGGGCGCCGCTGTCG
TCGGAGTACGCGGCGGTGAGCGCGTGCGACGTGCTGGCGGGCGTGCACGGCGCGGACCTGACGAAGCTGCTCTTCCTCCG
GCCGGGCCGCGCCGCGCTACTGCAGGTGGCGCCGCTGGGTGTGCCGGCCGTGGCGCGCGGGTGCTACGAGAAGGCGACGA
CGATGATGGGGATGCAGTACGAGCAGTACGACGCGGCGGCGAACGAGAGCTCGCTGGTCCGGAAGTACGCGGCGGACGAC
GTGGTGCTGCGCGACCCGGAGGCGGCGAAGCAGGGGGGCGGGTGGGACCTCATCGCGCGCGTGTACCTCAGCGGCCAGAA
CGTGAGCCTCGATCTGGACCGGTTCGGCGACACCCTGAGGAGGCTGCACGCCCGCGCCCTGCGGCTGCCGGTGGCAGGTC
CGTAG---------------------------------------------------------------------------
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-----------------------
>SNPs
S--------------------------S-----------------SSS--------S------S----------SS----
-----------------SS----------------SS-S---------------------S----S-S------------
-----------S---------------------S---------------------SSSSSSSS--S--SSS--S-SSSSS
SSS-SSSSSSSS--------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------------S--------------------
--------------------------------------------------------------------------------
---------------------------------------------------S----------------------------
---------------------S----------------------------S------S----------------------
-------------------------------------------------------S------------------------
----------------SSSS------------------S--S-SSSSSSSSSS--S-SSS-S--S-S-SSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS-----S----------------S----------S----------------------S
--------------------SSS------------------------------S-------------S-------S----
S-----S-------------------------------------------------------------------------
--------------------------------------------SS----------------------------------
--------------------------------------------------------------------------------
--------------------S-----------------------------S----------------------S-----S
------S---------S-------------------S--------------------------------S----------
----------SS--------------------------------------------------------------S-----
---------------------S----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------S-----------------------------------
--------------S--------------------------------------------------S--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------S--S--------------------------------------------------S--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------S------------------------------------SS-S---SSS--S----
--------------------------------------------------------------------------------
-------------------------------------------------------------------S------------
--------------------------------------------------------------------S-----------
-------------S------------------------------------------------------------------
----------------------S---------------------------------------------------------
--------------------------------------------------------------S--------S--------
-------------------------------------S----------------------------------S-------
----------------------S---------------------S-------------S-----S-----S---------
--------------------------------------------------------------------------------
------------S----------------S----------------------S----SSS-SS--SS--SSS--------
------S-----S--S--S-------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------S
-----------S--S-----------------S----------------------------S------------SSSSS-
------------------------S-S-SS-SSSSSSSS---S------------S-S---S-------------S---S
-----SSSSSSS------------------S------------------------------------S-SSSS-------
---S-----------SS--S------SS---------SS--------S---S------------------------S---
---------------------------S----------------------------------------------------
--------SSSSSSSSSSSSSSSSSSS--------------------S-----S---------------S-S--------
----------------------------------------S---------------------------------------
------------------------------------------------------------------S-------------
------S----------S----------------------SSSSSSSS--------------------------------
-----S-----------------
>forward_245
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------GAACGCGTAAAACCA
GCTGG---------------------------------------------------------------------------
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-----------------------
>reverse_2160
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------------C
TGGTGGGAAGAAGGTGACC-------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------
>forward_1760
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------------------------------------------------------TGACGCAGAGGAAACTGGTG
--------------------------------------------------------------------------------
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-----------------------
>reverse_3105
--------------------------------------------------------------------------------
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----------------------------------------------------------------AGCATCAGGAGAAGCC
AAGG----------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------
>forward_2525
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------GCTCTCGTTCCTGCTCTTCG-----------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----------------------
>reverse_4477
--------------------------------------------------------------------------------
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----------------------------------------------------------------------------CGCA
GATCATCGTGCAGAAG----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------
