>input_sequence_49506
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------------------------------------------------------------------AAGCTTTGGCACGC
CCGCAGCGCTGGTGTGTGGGGTCTCACTCTCACCCATGCTTCCGAACTCGAGAGCCCGCCACCGGCGCGACCCGAGCAAG
CTCCTCTACAAGCCGCGCCCGCCGCCGGAGCCGCACCCGTTCCTGCTCCACCTCAAGTCGCTCCCTTCCCCGGTCGCCGC
GGCGGCCGCGCTCCTCTCGGCGCCGCGCCGCCTCCACGACCACCCCTTCGCCTCCTGCGTGCTCTACCGCCTGGCCCGCG
CGCGCCTCTTCCCGCTCCTCCTCCCGCTCCTCTCCGCGCTCCGCGCCCGCCGCGCCCCGCTCCGCGCCACCGTCTTCGCG
GGGCTCATCGACCGCCTCGGCGCCGCCTCCCGCCCCGACGCGGCCCTCCTCGTCTTCTTCCGCGCCGTGCCCGCCTTCTG
CCCCCACTCCAACGCCACCTTCCACGCGCTGGTCCACTGCCTCGTCTGCAACGGCCGCGTGGACGCCGCCCGGAACATGC
TCCCCCGGGCCGCCAAGCTCGGCGTCCGCCCCAACGCCGTCTCCTACAACATCATCCTCAAGGGGCTGTGCGGCCGGGAC
GGGTCCGCGGGCGCCCGCGTGGTGCTCGACGAAATGCTCGGCCGCGGCGTCCGGCCCACGGTGGTCACCTTCAACACGCT
GGTGGGGGCGGCGTGCCAGGAAGGGGACGTGGGCGCGGCGGAGCGGCTCAAGGAAGAGATGGTGCGCCGGGGCGTCTCGC
CGAACGCCGTGACATACTCCCTCCTGATGCGGGGCCTGTGCGACGCCGGTCGGCAGGACGACGCCAAGAAACTGATGTTC
GACATGGAGTACCAGGGCTGCCAGACCGAGGCGGTGAACTACGGCGTGCTGATGAGCGCCTACGCGAGGCAGGGCGACGT
CGACGCCATCAGGGAGCTGCTCTCCGACATGCGCAAGCGCAAGCTCGGGCCCGACGACGCGGGCTACAACGTCCTGATCA
AGTGCCTGTGTGACAGCGGCAGGGCGGACGAGGCGCACAAGGCGCTCGTCGAGATGCAGCTCAAAGACGGCACGGCACCA
AGCGCGGCGACGTACCGCGTCCTGGCCGACGGGTGCTGCAGAGCCGGCGATTTCGGGTTGGGGCTACGGGTTTTCAACGC
CATGCTGTCCAGCGGGCATCGCCCCCTAGGTCACACCTTCAAGCACCTGGCGAAAGGGCTCGGCGAGGATGGCAAGGCGG
AGGAAGCCTGCTTCGTCTTGGAGAAAATGGCGGAGAGTGGGGTGTGGATGGATGCAGAAGGGTGGCGGTCTCTTGCTACA
TGCGTCTGCAGCGGCAGTGCAGGTGAGGTGAAGCTCGTCGATGAGCTAGCGTTGTCATCTTGACATTTCCAGTCCATGCG
AGGCTTTGACAGCCTTCAGCTGTGGCATTTCCATTTGTCTA----------------------TTCTCTTTATCTTGCTT
CAGTTCCAGAAGCATTTAGTTGTGCAACGCAAAATGTATAATGCTCCTGGGTATAGTGACAGATAAAAGATGCGAGTCTT
A-------------------------------------------------------------------------------
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>chr1D_1_TraesCS1D01G374500
AGGCAGAGCTACGACCCTCGCGAGGACGACAATGATTTTTTTGCTGCAACCGTAGCAGGCTTTTT-GCTACTATCGTGGG
AGGTTTTTGCTACATCCAGTAGATAAAAAAGCTTCAACCAGACAACGAAATACAGGAAAAGTTACAACCGTTTTGACAAA
AAGCTTCAACCCGCAGATGAAAAAGCTTCAAACAGAGATTGAGAAAATCCTCCTCGACGACGACCATGGCGTCTCTCTGT
GTTTTTGTTGCAACCGCAGAGTAAAAAGCTGCAACCTTTTGTGAAG-TTTTTTGCTACTATGGGTGAAGTTTTTTGCTAC
ATACATGTAAGGCGGAGTCGCGACCTCGCGAAAGACGGCGACGGTGTTTGATTTTTGCTGCAACCATAGTTTTTT-TTTT
GCTACTACGGGTGAAGTTTTTTGCTACATCCATGC-AAA-CGGTGTTGATTGACTGACGGCCGCCGTCGACATAATTTCC
TGCAGCGAGCATCAATGGCGAGGGGCGGCGGCCGAGCCACAACCGTCGCCGTCAAGAGCTGCAACGCAGGTGGAGTTGTT
GCATGGGAACTGGCGACGAGGACAGCCGGCGAGGGCGGGGACTGGCGACGAGGACGGGCGGCGAGGGCGGGGACCGGCGA
CGAGGATGGGCGGCGAGGGCGGG-G-TCCGGCCGGCGACGAGGAAGACCGACGAGGGTGGGGACTGACGACGGGGACGAC
CATCGGAGGGGACAGGAGGCGCGGTG-CCGTACTCCC-CGAGCGGGAGATGCGAATCCAGGCGACTGCCCAAGGAAGAAG
AAG--TTGGGGGCGATCT-ATTTCTTT-TTTT-ACCT---GGATCCAACGGCTGCGTGGCTCATATCCAATGACCTGGGC
TGG---------AACGGCCGGTCGGTGCGCCGGCGCCTATAAGCGGCCTAAACAAAACAAGGGAAATGTCAATCACCCAA
AAAGGAAGCGTAAAGGCTAATTACGTTAACGCAGGTGAGCTTACGGTCATCGCGCTCTGCTATCATAAGCTTTGGCACGC
CCGCAGCGCTGGTGTGTGGGGTCTCACTCTCACCCATGCTTCCGAACTCGAGAGCCCGCCACCGGCGCGACCCGAGCAAG
CTCCTCTACAAGCCGCGCCCGCCGCCGGAGCCGCACCCGTTCCTGCTCCACCTCAAGTCGCTCCCTTCCCCGGTCGCCGC
GGCGGCCGCGCTCCTCTCGGCGCCGCGCCGCCTCCACGACCACCCCTTCGCCTCCTGCGTGCTCTACCGCCTGGCCCGCG
CGCGCCTCTTCCCGCTCCTCCTCCCGCTCCTCTCCGCGCTCCGCGCCCGCCGCGCCCCGCTCCGCGCCACCGTCTTCGCG
GGGCTCATCGACCGCCTCGGCGCCGCCTCCCGCCCCGACGCGGCCCTCCTCGTCTTCTTCCGCGCCGTGCCCGCCTTCTG
CCCCCACTCCAACGCCACCTTCCACGCGCTGGTCCACTGCCTCGTCTGCAACGGCCGCGTGGACGCCGCCCGGAACATGC
TCCCCCGGGCCGCCAAGCTCGGCGTCCGCCCCAACGCCGTCTCCTACAACATCATCCTCAAGGGGCTGTGCGGCCGGGAC
GGGTCCGCGGGCGCCCGCGTGGTGCTCGACGAAATGCTCGGCCGCGGCGTCCGGCCCACGGTGGTCACCTTCAACACGCT
GGTGGGGGCGGCGTGCCAGGAAGGGGACGTGGGCGCGGCGGAGCGGCTCAAGGAAGAGATGGTGCGCCGGGGCGTCTCGC
CGAACGCCGTGACATACTCCCTCCTGATGCGGGGCCTGTGCGACGCCGGTCGGCAGGACGACGCCAAGAAACTGATGTTC
GACATGGAGTACCAGGGCTGCCAGACCGAGGCGGTGAACTACGGCGTGCTGATGAGCGCCTACGCGAGGCAGGGCGACGT
CGACGCCATCAGGGAGCTGCTCTCCGACATGCGCAAGCGCAAGCTCGGGCCCGACGACGCGGGCTACAACGTCCTGATCA
AGTGCCTGTGTGACAGCGGCAGGGCGGACGAGGCGCACAAGGCGCTCGTCGAGATGCAGCTCAAAGACGGCACGGCACCA
AGCGCGGCGACGTACCGCGTCCTGGCCGACGGGTGCTGCAGAGCCGGCGATTTCGGGTTGGGGCTACGGGTTTTCAACGC
CATGCTGTCCAGCGGGCATCGCCCCCTAGGTCACACCTTCAAGCACCTGGCGAAAGGGCTCGGCGAGGATGGCAAGGCGG
AGGAAGCCTGCTTCGTCTTGGAGAAAATGGCGGAGAGTGGGGTGTGGATGGATGCAGAAGGGTGGCGGTCTCTTGCTACA
TGCGTCTGCAGCGGCAGTGCAGGTGAGGTGAAGCTCGTCGATGAGCTAGCGTTGTCATCTTGACATTTCCAGTCCATGCG
AGGCTTTGACAGCCTTCAGCTGTGGCATTTCCATTTGTCTA----------------------TTCTCTTTATCTTGCTT
CAGTTCCAGAAGCATTTAGTTGTGCAACGCAAAATGTATAATGCTCCTGGGTATAGTGACAGATAAAAGATGCGAGTCTT
ACTGCTGAAAGTGATAGCTCACTCAGCTTCTGCACTGAAGTTCGTCAGTTTATTTCAAGTTAGAAATCTGTGTGCAGTTT
ATCAATCTTTCCACACCACTTTCAGAACTGTCGTT-----TTTAAAAATAGTCACCGGGTGAGGAACCGCCACCTGTGTA
TATCGATCTCATTTCAGAAAGAATGATCCGGTTTATGTAACAAACCGAATCGAAAACCAATTTTTTTCCCACCCGGGCTC
GCACCCTTTTCCATTAATTTTGCAATCAACAGAAATACATCAGTCTGTTTTGAATCGAAAACCATTGATTCAGTTTACGA
TGAGAAACCAAAACCGAATCAAAAATCTTAACAATGC-GAGGGGCAAGCCTGGCTGGCCGAGCATGCTCCAGGGAGAAGC
GTCGCTTTAACGCCAGCGAGAACAAGTGATGGTGATGAAGTGATATGATCGTAGAGAATGCAGTGAGTGGACATACCTCC
ACCAACGAGTGGTCATAGCCCAAAGAGAAGTGTAAATGAAGGGCACACACAACAGGGAGAGAGATGACAAGAATTGCTAC
TGAATGGCGTTTTGACGGAGAATTTGGAGAAACCTCAGAGAAGTTCACCGGGGATGGGAGGGGATGAAGACAAGGACAAG
GCCA--------------------------GTGACGGCGAGGCCTGGGAGGGTGGCGAGAGAGCAAGCCGGGAGGCAGCT
GCATGGTGTCCTAAATTCGACGACCATCATCTGTCTACTAGCGCAAAATATGCTGTAACCAGCAAAGAAAAACACACGCA
ACCAATTCAACAGAAGGGCACTTCATATGGCCAGAGATACAAAATAGACTTTGCACAAAAAATGTTCCTCGTATAATAGT
AGTGTAATCTGAGTATAAGGCAAACTGCCAACTAGGAGTATTTCTCATACA---GATCTCCCCATTAAATATGCTATTGT
ACAACCAACAAGCGCTCCAACAAAAACCTGCACAAA--AAAGGCACAAGTCAGCATAAACGTACACCTAAAAATGGCT
>chr3D_1
AGGCAGAGCTACGAC-CTCGCGAGGACGACAATGATTTTTTTGCTGCAACCGTAGCAGGC-TTTT-GCTACTACCGTGGG
AGGTTTTTGCTACATCCAGTAGATAAAAAAGCTTCAACCAGACAACGAAATACAGGAAAAGTTACAACCGTTTTGACAAA
AAGCTTCAACCCACAGATGAAAAAGCTTCAAACAGAGATTGAGAAAATCCTCCTCGACGATGACCATAGCGTCTCTCTGT
GTTTTTGTTGCAACCGCAGAGTAAAAAGCTGCAACCTTTTGTGAAG-TTTTTTGCTACTACGGGTGAAGTTTTTTGCTAC
ATCCATGTAAGGCGGAGTCGCGACCTCGCGAAAGACGGCGACGGTGTTTGATTTTTGCTGCAACCGTAG--TTTT-TTTT
GCTACTACGGGCGAAGTTTTTTGCTACATCCATGTAAAA-CGGTGTTGATTGACTGACGGCCGCCGTCGACATAATTTCC
TGCAGCGAGCATCAATGGCGAGGGGCGGCGGCCGAGCCACAACCGTCGCCGTCAAGAGCTGCAACGCAGGTGGAGTTGTT
GCATGGGAACTGGCGACGAGGACAGCCGGCGAGGGCGGGGACTGGCGACGAGGACGGGCGGCGAGGGCGGGGACCTGCGA
CGAGGACGGGCGGCGAGGGCGGG-G-TCCGGCCGGCGACGAGGAAGACCGACGAGGGCGGGGACTGACGACGGGGACGAC
CACCGGAGGGGACAGGAGGCGCGGTACC-GTGCTCCC-CGAGCGGGAGATGCGGATCCAGGCGACTGCCCAAGGAAGAAG
AAG--TTGGGGGCGATCT-TT---TTT-TTTT-ACCT---GGATCCAACGGCTGCGTGGCTCATATCCGATGGCCTGGGC
TGGACCGGCCGAAACGCTCGGCCGGTGTGCCGGTGCCTATAAGCGCCCTAAA----------------------------
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>chr3D_1
AGGCAGAACTACGAC-CTCGCGAGGACGACAATGATTTTTTTGCTGCAACCGTAGCAGGC-TTTT-GCTACTATCGTGGG
AGGTTTTTGCTACATCCAGTAGATAAAAAAGCTTCAACCAGACAACGAAATACAGGAAAAGTTACAACCGTTTTGACAAA
AAGCTTCAACCCGCAGATGAAAAAGCTTCAAACAGAGATTGAGAAAATCCTCCTCGACGACGACCATGGCGTCTCTCTGT
GTTTTTGTTGCAACCGCAGAGTAGAAAGCTGCAACCTTTTGTGAAG-TTTTTTGCTACTACGGGTGAAGTTTTTTGCTAC
ATCCATGTAAGGCGGAGTCGCGACCTCGCGAAAGACGGCGACGGTGTTTGATTTTTGCTGCAACCGTAG--TGTT-TTTT
GCTACTACGGGTGAAGTTTTTTGCTACATCCATGTGAAA-CGGTGTTGATTGACTGACGGCCGCCGTCGACATAATTTCC
TGCAACGGGCATCAATGGCGAGGGGCGGCGGCCGAGCCACAACCGTCGCCGTCAAGAGCTGCAACGCAGGTGGAGTTGTT
GCATGGGAACTGGCGAAGAGGATAGCCGGCGAGGGCGGGGACTGGCGACGAGGACGGGCGGCGAGGGCGGGGACCGGCGA
CAAGGACGGGCGGCGAGGGCGGG-G-TCCGGCCGGCGACGAGGAAGACCGACGAGGATGGGGACTAACGGCGGGGACGAC
CACCGGAGGGGACAGGAAGCGCGGTG-C-GTGCTCCC-CGAGCGGGAGATGCGGATCCAGGCGACTGCCCAAG---GAAA
AAG--TTGGGGGCGATCT-AT---TTTGTTTT-ATCT---AGATCCAACGGCTGCGTGGCTCATATCCGATGGCCTGGGC
TGGACCGGCCGAAACGCTCGGCCGGTGCGCCGGCGCCTATAAGCGCCCT-------------------------------
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>chr3D_1
AGGCAGAGCTACGAC-CTCGCGAGGACGACAATGATTTTTTTGCTGCAACCGTAGCAGGC-TTTTTGCTACTACCGTGGG
AGGTTTTTGCTACATCCAGTAGATAAAAAAGCTTCAACCAGACAACGAAATACCGGAAAAGTTACAACCGTTTTAACAAA
AAACTTCAACCCGCAGATGAAAAAGCTTCAAACAGAGATTGAGAAAATCCTCCTCGACGACAACCATGGCGTCTCTCTGT
GTTTTTGTTGCAACCGCGGAGTAAAAAGCTGCAACCTTTTGTGAAG-TTTTTTGCTATTACGGGTGAAGTTTTTTGCTAC
ATCCATGTAAGGCGGAGTCGCGACCTCGCGAAAGACGGCGACAGTGTTTGATTTTTGCTGCAACCATAG--TTTT-TTTT
GCTACTACGGGTGAAGTTTTTTGCTACATCCATGC-AAA-CGGTGTTGATTGACTGACGGCCGCCGTCGACATAATTTCC
TGCAGCGAGCATCAATGGCGAGGGGCAGCGGCCGAGCCACAACCGTCGCCGTCAAGAGCTGCAACGCAGGTGGAGTTGTT
GCATGGGAACTGGCGACGAGGAC-------------GGGGACTAGCGACGAGGACGGGCGGCGAAGGCGGGGACCGGCGA
CGAGGACGGGCGGCGAGGGCGGG-G-TCCGGCCAGCGACGAGGAAGACGGACGAGGGTGGGGACTGACGACGGGGACGAC
CACCGGAGGGGACAGGAGGCGCGGTG-CCGTGCTCCC-CGAGCGGGAGATGCGGATCCAGGCGACTGCCCAAGGAAGAAG
AAG--TTGGGGGCGATCT-AT---TTT-TTTTTACCT---AGATCCAACGGCTGCGTGGCTCATATCCGATGGCCTGGGC
TGGACCGGCCGAAACGCTCGGCTGGTGCGCCGGCGCCTATAAGCGGCCT-------------------------------
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>chr6D_1
AGGCAGAGCTACGAT-CTCGCGAGGACGATAATGATTTTTTTGCTGCAACCGTAGCAGGC-TTTTTGCTACTACCATGGG
AGGTTTTTGCTACATCCAGTAAATAAAAAAGCTTCAACCAGACAACGAAATACAGGAAAAGTTACAACCGTTTTGACAAA
AAGCTTGAACCCGCAGATGAGAAAGCTTCAAACAGAGATTGAGAAAATCCTCCTCGACGACGACCATGGCGTCTCTCTGT
GTTTTTGTTGCAACCGCAGAGTAAAAAGCTGCAACCTTTTGTGAAG-TTTTTTGCTACTACGGGTGAAGTTTTTTGCTAC
ATCCATGTAAGGCGGAGTCGCGACCTCGCGAAAGACGGCGACGGTGTTTGATTTTTGCTGCAACCGTAG--TTTT-TTTT
GCTACTACGGGTGAAGTTTTTTGCTACATCCATGC-AAA-CGGTGTTGATTGACTGACGGCCGCCGTCGACATAATTTCC
TGCAGCGAGCATCAATGGCGAGGGGCGGCGGCCGAGCCACAGCCGTCGCCGTCAAGAGCTGCAACGCAGGTGGAGTTGTT
GCATGGGAACTGGCGACGAGGACAGCCGGCGAGGGCGGGGACTGGCGACGAGGACGGGCGGCGAGGACGGGGACGGGCGA
CGAGGACGGAAGGCGAGGGCGGG-G-TCTGGCCGACGACAAGGAAGACCGACGAGGGTGGGGACTGATGACGGGGACGAC
CACCGGAGGGGACAGGAGGCGCGGTG-CCGTGCTCCC-CGAGCGGGAGATGCGGATCCAGGCGACTGCCCAAGGAAGAAG
AAG--TTGGGGGCGATCT-AT---TTT-TTTT-ACCT---GGATCCAACGGCTGCGTGGCTCATATCCGATGGCCTGGGC
TGGACCGGCCGAAACGCTCGGCCGGTGCGCTGGCGCCTATAAGCGGCCTA------------------------------
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>chrUn_1
AGGCAGAGCTACGAC-CTCGCGAGGACGACAATGATTTTTTTGCTGCAACCGTAGCAGGG--TTTTGCTACTACCGTGGG
AGGTTTTTGCTACATCCAGTAGATAAAAAAGCTTCAACCAGACAACGAAATACAGGAAAAGTTACAACCGTTTTGACAAA
AAGCTTCAACCCGCAGATGAAAAAGCTTCAAACAGAGATTGAGAAAATCCTCCTCGACGACGACCATGGCGTCTCTCTGT
GTTTTTGTTGCAACCGCAGAGTAAAAAGCTGCAACCTTTTGTGAAG-TTTTTTGCTACTACGGGTGAAGTTTTTTGCTAC
ATCCATGTAAGGCGGAGTCGCGACCTCGCGAAAGACGGCGACGGTGTTTGATTTTTGCTGCAACCGTAG--TTTT-TTTT
GCTACTACGGGTGAAGTTTTTTGCTACATCCATGTAAAA-CGGTGTTGATTGACTGACGGCCGCCGTCGACATAATTTCC
TGCAGCGAGCATCAATGGCGAGGGGCGGCGGCCGAGCCACAACCGTCGCCGTCAAGAGCTGCAATGCAGGTGGAGTTGTT
GCATGGGAACTAGCGACGAGGACAGCCAGCGAGGGCGGGGACTGGCGACGAGGGCGGG-------------GACCGGCGA
CGACGACGGGCGGCGAGGGCAGG-G-TCCGGCCGACGACGAGGAAGACCGACGAGGGTGGGGATTGACGACGGGGACGAC
CACCGGAGGGGACAGGAGGCGCGGTG-CCGTGCTCCC-CGAGCGGGAGATGCGGATCCAGGCGACTGCCCAAGGAAGAAG
AAG--TTGGGGGCGATCT-A----TTT-TTTT-ACCT---GGATCCAACGGCTGCGTGGCTCATATCCGATGGCCTGGGC
TGGACCGGCCGAAATGCTCGGCCGGTGCGCCGGCGCCTATAAGCGCCCTAAA----------------------------
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>chr1A_267
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---------------------------GCTGCAACCATA---GTAGATTTTTTGCTTCTATCGGTGAAGCTTTTTGCTAC
ATCCATGTAAGGCGGAGTCGCGACCTCGCGAAAGACGGCGACGGTGTTTGATTTTTGCTGCAACCGTAG--TTTACTTTC
GCTACTACGGGTGAAGTTTTTTGCTACATCCATTC-AAAACGGTGTTGATTGACTGACGGTCGCCGTCGATATAATTTCC
TACGGCGAGCATCAATGGCGAGGGGCGGCGGCCGAGCCACAACCGTCGCCGTCAAGAGCTGCAACGCAGGTGGAGTTGTT
GCATGGGAACTGACGACGTGGACAGCTGGCGAGGGCGGGGACTGGCGACGAGGACGGGCGGCGAGGGCAGGGATCGGCGA
CGAGGACGGGCGGCGAGGGTGGG-GGTCCGG-CGGCGACGAGGAAGACCGGCGAGGGTGGGGACCGG---------CGAC
CACCGGAGGGGACAGGAGGCGCGGCG-TCGCGCTCCCCCAAACG--------GGATCCAACTGACTGCCCGAGGAAGAAG
AGAGCTT-GGGGCGATTCGTT---TTT-TTTTT-----------------------------------------------
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>chr2A_267
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---------------------------GCTGCAACCGTA---GTAG-ATTTTTGCTTCTATCGGTGAAGCTTTTTGCTAC
ATCCATGTAAGGCGGAGTCGCGACCTCGCGAAAGACGGCGACGGTGTTTGATTTTTGCTGCAACCGTAG--TTTACTTTC
GCTACTACGGGTGAAGTTTTTTGCTACATCCATTC-AAAACGGTGTTGATTGACTGACGGTCGCCGTCGATATAATTTCC
TACGGCGAGCATCAATGGCGAGGGGCGGCGGCCGAGCCACAACCGTCGCCGTCAAGAGCTGCAACGCAGGTGGAGTTGTT
GCATGGGAACTGGCGACGTGGACAGCTGGCGAGGGCGGGGACTGGCGACGAGGACGGGCGGCGAGGGCAGGGATCGGCGA
CGAGGACGGGCGGCGAGGGTGGGCG-TCCGG-CGGCGACGAGGAAGACCGGCGAGGGTGGGGACCGG---------CGAC
CACCGGAGGGGACAGGAGGCGCGGCG-TCGCGCTCCCCCAAACG--------GGATCCAACTGACTGCCCGAGGAAGAAG
AGAGCTTGGGGGCGATTCGTT---TTT-TTTT-GCTT---GGATCCAGTGGCTGCGTGGCTCAAATCGAACGGTCCGGGC
TGGACCGGCCG---------------------------------------------------------------------
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>chr4A_288
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-------------------------------------------------TTTTGCTTCTATCGGTGAAGCTTTTTGCTAC
ATCCATGTAAGGCGGAGTCGCGACCTCGCGAAAGACGGCGACGGTGTTTGATTTTTGCTGCAACCGTAG--TTTACTTTT
GCTACTACGGGTGAAGTTTTTTGCTACATCCATTC-AAAACGGTGTTGATTGACTGACGGTCGCCGTCGATATAATTTCC
TGCGGCGAGCATCAATGGCGAGGGCCGGCGGCCGAGCCACAACCGTCGCCGTCAAGAGCTGCAACGCAGGTGGAGTTGTT
GCATGGGAACTGGCGACGTGGACAGCCGGCGAGGGCGGGGACTGGCGACGAGGACGGGCGGCGAGGGCGGGGATCGGCGA
CGAGGACGGGCGGCGAGGGTGGG-G-TCCGG-CGGCGACGAGGAAGACCGGCGAGGGTGGGGACCGG---------CGAC
CACCGGAGGAGACAGGAGGCACGGCG-CCGCGCTCCCCCAAACGGGACACGCGGATCCAACTAACTCCCCGAGGAAGAAG
AGAGC-TGGGGGCGATTCGTT---TTT-TTTTTTTGCTTGGGATCCAGCGGCTGCGTGGCTTAAATCGAACGGCCCGGGC
TGGACCGGCCG---------------------------------------------------------------------
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>chr3B_288
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-------------------------------------------------TTTTGCTTCTATCGGTGAAGCTTTTTGCTAC
ATCCATGTAAGGCGGAGTCGCGACCTCGCGAAAGACGGCGACGGTGTTTGATTTTTGCTGCAACCGTAG--TTTACTTTT
GCTACTACGGGTGAAGTTTTTTGCTACATCCATTT-AAAACGGTGTTGATTGACTGACGGTCGCCGTCGATATAATTTCC
TGCGGCGAGCATCAATGGCGAGGGCCGGCGGCCGAGCCACAACCGTCGCCGTCAAGAGCTGCAACGCAGGTGGAGTTGTT
GCATGGGAACTGGCGACGTGGACAGCCGGCGAGGGCGGGGACTGGCGACGAGGACGGGCGGCGAGGGCGGGGATCGGCGA
CGAGGACGGGCGGCGAGGGTGGG-G-TCCGG-CGGCGACGAGGAAGACCGGCGAGGGTGGGGACCGG---------CGAC
CACCGGAGGAGACAGGAGGCACGGCG-CCGCGCTCCCCCAAACGGGACACGCGGATCCAACTAACTTCCCGAGGAAGAAG
AGAGC-TGGGGGCGATTCGTT---TTT-TTTTTTTGCTTGGGATCCAGCGGCTGCGTGGCTTAAATCGAACGGCCCGGGC
TGGACCGGCCG---------------------------------------------------------------------
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>chr1B_1036
TCG-----------------------------------------------------------------------------
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------------------------CACTCTCGCCGATGCTTCCGAACTCGAGAGCCCGCCACCGGCGCGACCCGAGCAAG
CTCCTCTACAAGCCGCGCCCGCCGCCGGAGCCGCACCCGTTCCTGCTCCACCTCAAGTCGCTCCCTTCGCCGGTCGCCGC
GGCGGCCGCGCTCCTCTCGGCGCCGCGCCGCCTCCACGACCACCCCTTCGCCTCCTGCGTGCTCTACCGCCTGGCCCGCG
CGCGCCTCTTCCCGCTCCTCCTCCCGCTCCTCTCCGCGCTCCGCGCCCGCCGCGCCCCGCTCCGCGCCACCGTCTTCGCC
GGGCTCATCGACCGCCTCGGCGCCGCCTCCCGCCCCGACGCGGCCCTCATCGTCTTCTTCCGCGCCGTTCCCGCCTTCTG
CTCCCACTCCAACGCCACCTTCCACGCGCTGATCCACTGCCTCGTCTGCAACGGACGCGTGGATGCCGCCCGGAACATGC
TCCCCCGGGCCGCCAAGCTCGGCGTCCGCCCCAACGCCGTCTCCTACAACATCATCCTCAAGGGGCTGTGCGGCCGGGAC
GGGTCCGCGGGCGCCCGCGTGGTGCTCGACGAAATGCTCGGCCGCGGCGTCCGGCCCACGGTGGTCACCTTCAACACGCT
GGTGGGGGCGGCGTGCCAGGAGGGGGACGTGGGCGCGGCGGAGCGGCTCAAGGAAGAGATGGTGCGCCGGGGCGTCTCGC
CGAACGCCGTGACATACTCCCTCCTGATGCGGGGTCTCTGCGACGCCGGTCGGCAGGACGACGCCAAGAAGCTGATGTTC
GACATGGAGTACCAGGGCTGCCAGACCGAGGCGGTGAACTACGGCGTGCTGATGAGCGCCTACGCGAGGCAGGGCGACGT
TGACGCCATCAGGGGGCTGCTCTCCGACATGCGCATGCGCAAGCTCGGGCCCGACGACGCGAGCTACAACGTCCTGATCA
AGTGCCTGTGTGACAGCGGCAGGGTGGAGGAGGCGCACAAGGCGCTCGTCGAGATGCAGCTCAAAGATGGCATGGCGCCA
AGCGCGGCGACTTACCGCGTCCTGGCCGACGGGTGCTGCAGAGCCGGCGATTTCGGGTTGGGGCTACGGGTTTTCAACGC
CATGCTGTCCAGCGGGCATCGCCCCCTAGGTCACACCTTCAAGCACCTGGCGAAAGGGCTGGGCGAGGACGGCAAGGCGG
AGGAAGCCTGCTTCGTCTTGGAGAAGATGGCGGAGAGTGGGGTGTGCATGGATGCAGAAGGGTGGCGGTCTCTTGCAACA
TGCGTCTGCAGCGGCAGCGCAGGTGAGGTGAAGCTCGTCGATGAGCTAGCGTTGTCATCTTGACATTTCCAGTCCATGTG
AGGTTTTGACAGGCCTCAGCCGTTGCGTTTGTCACCTTAGGGGGGTCGGCGTTTCCATTGTTTTTCTCTTTGTCTTGCTT
CAGTTACAGGAGCACTTGGTTGTGCAAGGCAAAATGCATAAAGCTCCTGGATATAATGGCAGATAAAAGATGCGAGTATT
ACTGCTGGAAGTGATAGCTCACTCAGCTTCTGTACTGAAGTTCGTCGGTTTATTTCGAGTTAGAAATCTGTGTGCAGTTT
ATCAATCTTTTCATACCACTTTGAGAACTGCCGTTCCCTTTTTTTAAATAGTCACCGGGGGAGGAGTTGCCACCTG--TA
TATCGATCGCATTTCAGAAAGAATGATCCGGTTTATGTGAGAAACCGAATT-----------------------------
--------------------------------------------------------GAAAACCATTGATTCAGTTTACG-
TGAGAAACCGAAACCGAAACAAAAACCTTAACAATGC-GAGGGGCAAGCCTGGCTGGCCGAGCATGCACCAGGGAGAAGC
GTCGCTTTAACGCCAGCGAGAACAAGTGATGGTGATGAAGTGATATGATCGTAGAGAATGTGGTGAGTGGACATACCTCC
ACCGACGGGTGGTCATAGCCCAAAGAGAAGTGTAAATGAAGGGCACACACAACAGGGAGAGAGATGACAAGAAATGCTAC
TGAATGGCGTTTTGATGGAGAATCTGGAGAAACCTCAGAGAAGTTCACCGGGGATGGGAGGGGC----------------
-----------------GCGGCCTCCTCCGGTGACGGCGAGGCCTGGGAGGGTGGCGAGAGAGCAAGCCGGGAGGCAGCT
GCATGCCGTCGTAAATTCGACGACCATCTTCTGTCTACTAGCGCAAAATATGCTGTAACCAGCAAAGAACAACACACGCA
AACAGTTCGACAGAAGGGCACTTTATATGGCCAGAGATACAAAATAGACTTTGCACAAAAAATGTTCCTCGTATAATAGC
AGTGTAATCTGAGTATAAGGCAAATTGCCAACTAGCAGTATTTCTCATACATAAGATTTCCCCATTAAATACGCTATTGT
ACAACCAACAAGCGCTCCAGCAAAAACCTGCACAAAAAAAAGGCACAAGTCAGCACAAACGTACACCTAAAAATAGCT
>chr1A_1043
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----------------------------CTCACCGATGCTTCCGAACTCGAGAGCCCGCCACCGGCGCGACCCGAGCAAG
CTCCTCTACAAGCCGCGGCCGCCGCCGGAGCCGCACCCGTTCCTGCTCCACCTCAAGTCGCTCCCTTCCCCGGTCGCCGC
GGCGGCCGCGCTCCTCTCGGCGCCGCGCCGCCTCCACGACCACCCCTTCGCCTCCTGCGTGCTCTACCGCCTCGCCCGCG
CGCGCCTCTTCCCGCTCCTCCTCCCGCTCCTCTCCGCGCTCCGCGCCCGCCGCGCCCCGCTCCGCGCCACCGTCTTCGCG
GGGCTCATCGACCGCCTCGGCGCCGCCTCCCGCCCCGACGCGGCTCTCCTCGTCTTCTTCCGCGCCGTGCCCGCCTTCTG
CTCCCACTCCAACGCCACCTTCCACGCGCTGATCCACTGCCTCGTCTGCAACGGCCGCGTGGACGCCGCCCGGAACATGC
TCCCCCGGGCCGCCAAGCTCGGCGTCCGCCCCAACGCCGTCTCCTACAACATCATCCTCAAGGGGCTGTGCGGCCGGGAC
GGGTCCGCGGGCGCCCGCGTGGTGCTCGACGAAATGCTCGGCCGCGGCGTCCGGCCCACGGTGGTCACCTTCAACACCCT
GGTCGGGGCGGCGTGCCAGGAAGGGGACGTGGGCGCCGCGGAGCGGCTCAAGGAAGAGATGGTGCGCCGGGGCGTCTCGC
CGAACGCCGTGACATACTCCCTCCTGATGCGGGGCCTGTGCGACGCCGGTCGGCTGGACGACGCCAAGAAACTGATGTTC
GACATGGAGTACCAGGGCTGCCAGACCGAGGCGGTGAACTACGGCGTGCTGATGAGCGCCTACGCGAGGCAGGGTGACGT
CGACGCCATCAAGGGGCTGCTCTCCGACATGCGCAAGCGCAAGCTCGGGCCCGACGACGCGAGCTACAACGTCCTGATCA
AGTGCCTGTGTGACAGCGGCAGGGTGGAGGAAGCGCACAAGGCGCTCGTCGAGATGCAGCTCAAAGACGGCACGGCGCCA
AGCGCGGCGACGTACCGCGTCCTGGCCGACGGGTGCTGCAGAGCCGGCGATTTCGGGTTGGGGCTACGGGTTTTCAACGC
CATGCTGTCCAGCGGGCATCGTCCCCTAGGTCACACCTTCAAGCACCTGGCGAAAGGGCTCGGCGAGGACGGCAAGGCGG
AGGAAGCCTGCTTCGTCTTGGAGAAGATGGCGGAGAGTGGGATTTGGATGGATGCAGAAGGGTGGCGGTCTCTTGCTACA
TGCGTCTGCAGCGGCGGTGCAGGTGAGGTGAAGCTCGTCGATGAGCTAGCGTTGTCATCTTGACATTTCCAGTCCATGTG
AGGCTTTGACAGCCTTCAGCTGTGGCATTTCCATTTGTCTA----------------------TTCTCTTTATCTTGCTT
CAGTTCCAGAAGCATTTAGTTGTGCAAGGCAAAATGCATAATGATA-TGGGTATAATGGCAGATAAAAGATGCGAGTCTT
ACTGCTGAAAG------------------------TGAAGTTCGTCAGTTTATTTCAAGTTAGAAATCTGTGTGCAGTTT
ATCAATCTTTCCATACCACTTTCAGAACTGTCGTT-----TTTTAAAATGGTCACCGGGGGAGGAATCGCCACCTG--TA
TATCGATCTCATTTCGGAAAGAATGATCCGGTTTATGTAAGAAACCGAATCGAAAACCTTTTTTT---CCAACCGGGCTC
GCACCCCTTTCCACTAATTTTGCAATCAATGGAAATACATCAGTCTGTTTTGAATCAAAAACCATTGATTCAGTTTAC-A
TGAGAAACCGAAACCAAATCAAAAACCTTAACAATGCTGAGGGGCAAGCCTGGCTGGCCGAGCATGCACCAGGGAGAAGC
GTCGCTTTAACGCCAGCGAGAACAAGTGATGGTGATTAAGTGATATGATCGTAGAGAATGTGGTGAGTGGACATACCTCC
ACCAACGGGTGGTCGTAGCCCAAAGAGAAATGTAAGTGAAGGGCACACACAACAGGGAGAGAGATGACAAGAATTGCTAC
TGAATGGCGTTTTGATGGAGAATCTGGAGAAACCTCGGAGAAGTTCACCGGGGATGGGAGGGGATGAAGACAAGAACAAG
GCGAGGGGCTTAGCCTGGCGGCCTCCTCCGGTGACGGCAAGGCCTGGGAGGGTGGCGAGAGAGCAAGCCGGGAGACAGCT
GCATGGTGTCGTAAATTCGACGACCATCATCTATCTACCAGCGCAAAATATGCTGTAACCAGCAAAGAACAACACACCCA
ACCAGTTCAACAGAAGGGCACTTTATATGGCCAGAGATACAAAGTAGACTTTGCACAAAAAATGTTCCTCGTATAAAAGT
AGTGTAATCTGAGTATAAGGCAAATTGCCAACTA-CAGTATTTCTCATACAGAAGAATTCCCCATTAAATACGCTACTGT
ACAACCAACAAGGGCTCCGGCAAAAACCTGCACAAA--AAAGGCATAAGTCAGCACAAACGTACACCTAAAAATAGCT
>SNPs
---------------S--------------------------------------------S-------------------
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--S------------------------------------------------------------------SS---------
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------S-------------------------------------------------------------------------
--S----------------------------S---------------------S--------------------------
---------------------SSS------------------------------------------------S-------
----------------SS---S------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS----------S---------------------------------------------
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-S-----------------------------S------------------------------------------------
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--------------S----------------------------------------------S------------------
------------------------S---S-----------------------------------------------S---
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---------------------------------------------------------------------S----------
-------------------------S------------------------------------------------------
------------------------------------------------------------------------------S-
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---------------------------S--------S------------------S--S---------------------
--------------------------------S-----------------------------------------------
-------------S-----------------------------S---------------S------S---------SS--
----------------------------------------S-----------------SS-----SSS---S--------
------S------S---------------SS-------------------------------------------------
---------S---------------S-----------------------------------------S------------
------------------------------------------------------------SS------------------
-------S------------------------------------------------------------------------
---------------S-------S--------------------------------------------------S-----
--S-----------------------------------------------------------------------------
----------S----------------------------------------------------------S----------
----S------------------S--------------------------------------------------------
------------------------S----------S---------------------S-------------S--------
-------------------S-----------------------------------S------------------S---
>forward_1006
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--------------------------TAACGCAGGTGAGCTTACGG----------------------------------
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>reverse_2906
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-------------------------TCTTAACAATGCGAGGGGCA-----------------------------------
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