>input_sequence_49495
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------ACAAGAAGAAGGCCGAAGCAGGGGAGATGGAAGGGAAGTTAACATGGTTCTCTGAAATTGCATTATCTGAGAAG
GGAATGTCGGCGGCGGAGAGGGAAAGAAGGGAGCGACAACGTTTTAGCGGAACGAAGGGACAACGGCCGGAGGAGAAGGG
AGCGATGGAAGAGGTGTCCGGCAAAAAAGAGATCTTTTTCTTCATGGCCAGTGCTGTCATCACCTTGGAGAGCTCGGATG
GGATGCTGTTCACGGTGTCGGAGGAGGCGGCACGGTTGTCCGTGCCCCTCGCCGACATGATCGACCAGGGCTGCGCCGGA
GGCATCATCCAGCTACCCGACGTGGACGCCAGGGCCCTCGCCACGGTAATCGAGTACTGCAACAAGCACGCCGACGCCGC
CTCTGCCAACAGCCGCGTCGATGAGGGTAGCAGCAGCTGCAACTCCGAGGCATCCGTGGAGGCGCTGATGGAGTGGGACC
GCAAGCTCGTCGACGGCCTCAGCCAGGACGCCCTCTGCGACGTCATCATCGCCGCTAAGTTCCTCCACATCAAGGGGCTC
TTCGACGCTGCCTGCCAGAAGGTCGCCGTCGTGGAC---------------------------------CAGATAGAGGA
GGAAGACGTGTGCACTTGGTTCTCTGGACTTACTCCCTTTTCTGAGAAGGGGACGGCGGCAGCGGAGGGGGCAAGAACCA
A---------------------TGGTCAACGGCCGGAGAAGAAGGGGGCGATGGGAGAGGAGGCGGAGCAGGTTGCTGGC
GAAAACGACACATTTTTCTTCGGGGCCAGCGGAAAAATCATCACCTTAAAGAGCTCGGATGGGATGCTGTTCAAGGTGTC
GGAGGCCGCAGCACGGCTGTCCGTGCTCCTCGCCGACATGATCGACCAGGGCTGCGCCAAAGGCATCATCCAGCTACCCA
ATGTGGACGCCAGGGCCCTCGCCACGGTGATCGAATACTGCAATGAGCACGCCGACGCCACCGCCACCGCCAATCCCGAC
GCCAACCACGGCGTCGCTGAGGGCAGCAGTAGCTGCAACTCTGAGGCATCCGGTGAGGCGCTGAAGGAGTGGGACCGCAA
GCTCGTCGACGGCCTCAGCCAGGACGCCCTCTACGACCTCATCATGGCCACCAACTTCCTCCACATCAAGGGACTCCTCG
ACGCTGCCTGCCAGAAGGTCGCCGACATGATCAAGGGCAAGAGCGTGGAGCAGACGCGAAAGATGTTCGGCATCGCCACC
GACTTCACCGAGGAGGAGGA---GGAACTGCGTAAAGAGAGTCCATGGGCCTTCGAGGAGTAGGAGCCATTT--------
---ATTTCT-ATGGTAACATCTCA----CTGTATCTGGTGACTTAGTGGTTCTGTTCTGCCTCCTTTATCACTAATTTCT
TAGTGGTC-----------TTTGTCAAAGATTATAGAAGTAAGGTCAACTTGATTCGTCTTTCGCGTGCTTAAGCCTTTT
TCATTTCATTCTGTCGAAGAAGATTGGGATCGAATTTGTATTTAAAGCTTTGAACTGCATGCTTCAAGTGG-ATGAATGA
GTAAA---------------------------------------------------------------------------
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----------------------------------------------------------------------------
>chr3B_1_TraesCS3B01G340200
GCGCACAAAACATTTGTCAAAGTTTTCCACCAAAATATTAGGTTTTATTTTTATTGTTTTCCTATTTGTTCTGATTTTAC
TGTTCGGTCAGGGAGCATTTGAAATCGGGAGCAAATACCAC----CCTAAGCCCTCAACACCATTTAAAATATTCAACAC
AACCCTTGTCA---CTTTTCCACACATGCCTCAGTGATGTTGGAAAAAGTAAGCTAGAAACCCATCCGGTCCAGACGCTT
TTGTCAAGTACATCTAAAATGAGTGCATC-TTGACCTCTTCCGTTGTATATGGAGCGTCCAGTCTTTGCATTCATTGCTG
CCGTTTAGTTTTCGTGGTGCACAAGAGAGAATGCCATCCATCCCGAACGTTTCCTATGTACTGTATAGTTCTTTATAGAA
ATTCTACCGTATGATTGTGCAACTGTTGAGCTTCCTCACATTACGACGCGGACGGCGTTTGAGGCCTTTCAATTCTATTA
TTATTATTCTTCCTTCTGCGTGTGGCATGTTGATGAAAAAAAAAGTGTTGC------TATCTCCTTCATGAAACAGCACT
AAAAAA-----ACTGGCTCAAGCATAATATTACAAATGGGCTCAATAAATCTAGCAGCCCAAAACTCCAGCTTGTTTCTG
TTCGGCCCAGAAGTAGGCCCATTGCGGCAGAAGAAATGGATTCATCGCACCCACATCGCACAT--------CGCACACTC
GGCCATTTCCGGCAGTTCCCCACCTAACCCACATCCAGAGCA--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------ATGGCGGCGGAGGAGAAGCAAGAGATGGGAA------CGG
GAGCGGCGCCGGGAGAGAAGGGAGCGACGACCGGGGACAAGGCGATGGGGAAGACGGGAGCGACGGAGGAGGAGAAGGGA
GACGCGGCCGCGGACAAGGAGAAGGGGTCGACGGCGGAGAAGGAAGAGTAGGGAGCGACGGCCGGGGATGAGGAAGAGGG
GGAGGA---------GGAGGAGG------AGAGCGCCACGGCGGAGCAAAAGGGATAAAATCGACCGGCATCGGCAAAGA
AGGGGCACAAGAAGAAGGCCGAAGCAGGGGAGATGGAAGGGAAGTTAACATGGTTCTCTGAAATTGCATTATCTGAGAAG
GGAATGTCGGCGGCGGAGAGGGAAAGAAGGGAGCGACAACGTTTTAGCGGAACGAAGGGACAACGGCCGGAGGAGAAGGG
AGCGATGGAAGAGGTGTCCGGCAAAAAAGAGATCTTTTTCTTCATGGCCAGTGCTGTCATCACCTTGGAGAGCTCGGATG
GGATGCTGTTCACGGTGTCGGAGGAGGCGGCACGGTTGTCCGTGCCCCTCGCCGACATGATCGACCAGGGCTGCGCCGGA
GGCATCATCCAGCTACCCGACGTGGACGCCAGGGCCCTCGCCACGGTAATCGAGTACTGCAACAAGCACGCCGACGCCGC
CTCTGCCAACAGCCGCGTCGATGAGGGTAGCAGCAGCTGCAACTCCGAGGCATCCGTGGAGGCGCTGATGGAGTGGGACC
GCAAGCTCGTCGACGGCCTCAGCCAGGACGCCCTCTGCGACGTCATCATCGCCGCTAAGTTCCTCCACATCAAGGGGCTC
TTCGACGCTGCCTGCCAGAAGGTCGCCGTCGTGGAC---------------------------------CAGATAGAGGA
GGAAGACGTGTGCACTTGGTTCTCTGGACTTACTCCCTTTTCTGAGAAGGGGACGGCGGCAGCGGAGGGGGCAAGAACCA
A---------------------TGGTCAACGGCCGGAGAAGAAGGGGGCGATGGGAGAGGAGGCGGAGCAGGTTGCTGGC
GAAAACGACACATTTTTCTTCGGGGCCAGCGGAAAAATCATCACCTTAAAGAGCTCGGATGGGATGCTGTTCAAGGTGTC
GGAGGCCGCAGCACGGCTGTCCGTGCTCCTCGCCGACATGATCGACCAGGGCTGCGCCAAAGGCATCATCCAGCTACCCA
ATGTGGACGCCAGGGCCCTCGCCACGGTGATCGAATACTGCAATGAGCACGCCGACGCCACCGCCACCGCCAATCCCGAC
GCCAACCACGGCGTCGCTGAGGGCAGCAGTAGCTGCAACTCTGAGGCATCCGGTGAGGCGCTGAAGGAGTGGGACCGCAA
GCTCGTCGACGGCCTCAGCCAGGACGCCCTCTACGACCTCATCATGGCCACCAACTTCCTCCACATCAAGGGACTCCTCG
ACGCTGCCTGCCAGAAGGTCGCCGACATGATCAAGGGCAAGAGCGTGGAGCAGACGCGAAAGATGTTCGGCATCGCCACC
GACTTCACCGAGGAGGAGGA---GGAACTGCGTAAAGAGAGTCCATGGGCCTTCGAGGAGTAGGAGCCATTT--------
---ATTTCT-ATGGTAACATCTCA----CTGTATCTGGTGACTTAGTGGTTCTGTTCTGCCTCCTTTATCACTAATTTCT
TAGTGGTC-----------TTTGTCAAAGATTATAGAAGTAAGGTCAACTTGATTCGTCTTTCGCGTGCTTAAGCCTTTT
TCATTTCATTCTGTCGAAGAAGATTGGGATCGAATTTGTATTTAAAGCTTTGAACTGCATGCTTCAAGTGG-ATGAATGA
GTAAACCTGAATTACCTGACATTTCTCACCAGCCCCATGAATTG--CTGTTGAATTTCTTCAGCTACTCTTGATCGAAGG
TGGTGTGGATAG-----TACTATTCTTGATCTGCTTGGCTGAATTGGGAAGTTCCCTCAAAGTGCTTGTTATGCCTTGCC
CATTTTCTTGCAGCTGGGAATATCATACCATGGTTGCTCAGTCTCTGCAGTTGTGCTTGTATAAAGTTGCAGTGAATATT
TCAAAGGCTTGCA--------GTGAATGGCACATACTGATGTGTATGTCACTGATTAGAGATACCATGAATTG-CTCTGT
GTCTGTGTTGGACTTTTCTTTGATTGA------------------------------------------GCATGAGTGAA
TAGCATATATATCC-TGA-CCCATGCAATTGGT-----------GAGTTTCTTATGCCACATTGGATTGTGTGTTTTGCT
TGACTACATTCGGCTGAAGAATATAGGTCCAGTAAGTATTCTG-------------------------------------
---------------------------------------------------------------------GTAGTAATTTT
CGCATGTGGCTCATGCGTCTTAGTTTTTC------------TAAACTATGTATTCATTTCAAACTAACCTTATCAGTCAA
TTGTCACCATGTAACGGATAAGGATCTTCTCTTGTTCTTATGTTTGAGTATGATTCAGCTCATACTATGCTTGGTTTTCA
GTATGATCTTGTTATTTTCTTCTGTATTTCGATGAAGGACATACTGT--TTTTTTTCTTTTTTTCCTTTGAGCTTGCATC
TTCTAGCTAGTATTAAGCTGCGTGTATCATTTGCGATGCGTAAACTCAGACCCAAATGTTAAAGAAATTAACTATACAGT
CAGGGAACATGCTTCATACTGGTGATGTTAGTACTACCATTATTTCTTCCTGGTACATGTGTATTTCTGTTTCTCGCTCT
TGATGTCATTTCAGAGGAACTAGTAGAGTTCAGCGCGCTTTGCTGTGTTGTTGGTGTTATTGGATTTTCATAATTTATTT
ACTCCCTCTATTTCAAAATCTTAGATGCATTAGTTTTGGAAAAGCCAAAACTCTTCAAGTTTGATTAAATTTGTAG
>chr3B_4
---CACAAAATATTTGTCAA-GTTTTCAACAAAAAACCAGGTTTC------TATTTTTTCACTATTTATTTTGATTTTAC
TATTCAATTAGGGAGCATTTGAGCTCGGGAGCAGACAATTTGTGTCGTAAGCCCTCAAATCCATTAAAAATATTCAACAC
AACCCTTGTCACTTCTTCTCCACACACGTCTGAATGACGTTGAAAAAATGG-GCCAGAAATCCATCTGGTCCAGGTGCTT
TTGTTAGGTACATCTAAAATGAGTGCATTTTTAACCCCTTCTATTGTATATGGAGCGTTCAGTAT-TGCATTCATTGATG
GCG-TTAGTTTTCGTGGTGCACAAGAGAGAACCTTGTCCATCCCCAACGTTTCCTCTGTATGGTATAGTTTTTTATAG-A
ATTCTTCCGCATGATTGTGCAAATGTTGAGCTTCCTCACAATACGACCCGGATGGCGTCTGAAACCTTTCAATTCTATTC
------TTCTTCCTTTTGCGTGTGGCCTGTTGATGAAAAAAAATT---GTGTTGCTATATCTCCTTCATGAATCACCACT
CAAAAAAAAAGACTGGCTCAAGCATAATATTACAAATGGGCCCACTAAATCCAGCAGCCCAAAACTCCAGCTTGTTTCAG
TTCGGCCCAGAAGTAGGCCCATTGCAGCAGAAGAAATGGATTCATCGCACTGATTCTGTCCAGAAGCACACCGCACACTC
GGCCATTTCCGGCAGTTCCCCACCTAACCCACATCGAGAGCA--------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------ATGGCGGCGGAGGAGAAGCAAGAGATGGGAGCGGGAGCGG
GAGCGGCGGTGGGAGAGAAGGGTCCGGCGACTGCGTACAGGGCGATGGGGAAGACGGGGCCGACGGAGGAGGAGAAGGGA
GACGCGGCCGCGGACAAGGGGAAGGGGTCGACGGCGGAGAAGGAAGAGAAGGGAGCGACGGCCGGGAATGAGGAAGATGG
GGAGGAAGAGGAGGAGGAGGAGAGAGCCAC---------GGCGGAGCGAAAGGGAGAAAATCGGTTGGCATCGGCGAAGA
GGGGGCATAAGAAGAAGGCGGAAGCAGAGGAGACGGAAGGGATGTTCACATGGTTCTCTGAAATTGCATTATCTGAGAAG
GGGACGGCGGCGGCGGAGAGGGAAAGCAGGGAGCGACGACGGTTTAGGAGTACGAAGGGACAAAGGCCGGAGGAGAAGGG
AGCGATGGAAGAGGTGGCCGGCAAAAAAGAGATCTTTTTCTTCAAGGCCAGTGCTGTCATCACCTTGGAGAGCTCGGATG
GGATGCTGTTCACGGTGTCAGAGGAGGCGGCACGGCTGTCCGTTCCCCTCGCCGACATGATCGACCAGGGCTGCGGCGGA
GGCATCATCCAGATACCCAACGTGGACGCCAGGGCCCTCGCCACGGTGATCAAGTACTGCAATAAGCACGCCGACGCCGC
CTCTGCCAACC---------------------------------CCGAGGCATCCGAGGAGGCGCTGAAGGAGTGGGACC
GCAAGCTCGTCCATGGCCTCAGCCAGGACGCCCTCTGCGACGTCGTCATCGCCGCTCAGTTCCTCCACATCAAGGGGCTC
CTCGACGCTGCCTGCCAGAAGGTCGCCGTCGAGGACATGGTCAATTGCAAGACCCGCGGGCAGATGCACCAGATAGAGAG
GGAAGACATGTGCACATGGTTCTCTGGACTTACA---TTTTCTGAGAAGGGGACGGCGGCAGCGGATGGGGCAAGGGAGC
GACGACGGTTTAAGAGAACCAAGTGTCAACGGCCGGAGAAGAAGGGAGCGATGGCAGAGGAGACAGAGCAGGTTGCTGGC
GAAAACAACACATTTTTCTTCAGGGCCAGCGGAAAAATCATCACCTTAATGAGCTCGGATGGGATGCTGTTCAAGGTGTC
GGAGGCGGCTGCACGGCTGTCCGTGCTCCTCGCCGACATGATCGACGAGGGTTGCGCCGGAGGCATCATCCCGCTACCCA
ACGTGGACGCCAGGGCCCTCGCCATGGTGATCGAGTACTGCAACAAGCACGCCGACGCCGCCTTT---------------
GCCAACAGCCGCGTCGATGAGGGCAGCAGCAGCAGCAACTCCGAGGCATCCGAGGAGGCGCTGATGGAGTGGGACCGCAA
GCTCGTCGACGGCCTCAGCCAGGACGCCCTCTACGACCTCATGATGGCCGCCAACTTCCTCCACATCAAGGGGCTCCTCG
ACGCTGCCTGCCAGAAGGTCGCCGACAATGTCAAGGGGTACAGCGTGGAGCAGATGCGCGAGATGTTCGGCATCGCCAAC
GACTTCACCGAGGAGGAGGAGGAGGAACTGCGTAAAGAGAGTCCATGGGCCTTCGAAGAGTAGGAATCCCTTTGTTCGAA
GCCATTTCT-GCGGTAAAATCTCACTGTCTGTATCTGGTGGCTTAGTGGTTCTGTTCTGCCTCCTTTATCACTAATTTCC
TAGTGGTTGTTTCTTAGAATTTGTCAAAGATTATGGGGGTAAGGTCAACTTGATTCCTC---------------------
---TTCCACTCTGTCGAAGAAGATTCGGAACAAATTTGTGTTTAAAGCTTTGAACTGCATGCTTCAAAGTGGATGAATGA
GTTA---------ACCTGACATTTATCACCAACCCCATGAATTGCTCTGTTGAATTTCTTCAGCTACTCTTGATCGAAGG
TGTTCTGGATAGTTACCTACTACTCTTGATCTGCTTGGATGAATTCGATAGTTTCCTCATAATGCATGTTATGTCCTCCC
CATTTTCTTGCAACCAGCA-----ATACCATGATTGCTCAGTCTTTGCAGTTCTGCTTGTATAAAGTTGCGGTGAATATT
TGAAATGTGGCGA--------GTGAATGACACATCCTGATGTGTGTGTCACTGATTAATGCCATGAATCGCTCTCTGTCT
GTCTGTGTTGGACTATTCTTTTGATTCAGCATCAAGTGTTTTCTTTCCCCTAATACTCTTGATGAGCTGGCATGAGTGAA
TAGCATATACTACCATGATCCCATGCAATTG----------------------------------ATTGTGTGTTTTGCT
TGACTACATTCAGCTAAACAATATACTAGGTCGCTCAACGCCAATGGCATTCTGGTACTCCCTCCGATCCGAATTGATTG
ATGCAGCCTCTATCCAACATTGTATGGAGGTTGTATAGATGCTGCGTCAATTTATTCGGGTCGGAGTGAGTACTAATTTT
GGCATGTAGCTCATGCGTCTTAGTTTTTTCTTCTTCTTCTATAAACTATTCGTTTGAAACTAATTAACATTATCAGTCAA
TTGTCACCATGTAACTGATAAGGATCTTGTCTTCTTCTTATGTTTGAGTATGATTCAACACATACTATGCTTGGTTTTCA
GTATGATCTTGTTATTTTCTTCTGTATTTTGTTGAAGGACATACTCT--TTCTTTTCTTT-TTTCCTTTGAGCTTGCATC
TTCTAGCTAGTATTAAGCTGCATGTATCATTTGCGATGCGTAAACTCTGACCCAAATGTTAAACAAATTAACTATACAGT
CAGGGAACATGCCTCATACTGGTGATGC---TACTACCATTATTTCTTCCTGGTAAAAGTGTATTTCTGTTTTTCGCTCT
TGATGTCTTTTCAGAGGAA-------------------------------------------------------------
----------------------------------------------------------------------------
>chr3A_6
-----CAAAATATTTGTCAAAGTTTTCAACAAAAAAGTTTGGTTC------TATTTTTTTACTATTTGTTTCAATTTTAC
GGTTCAATTAGGGAGCATTTCAGCTCGGGAGTAGATACTTCGCATCCTAAGCCCTCAAATCCATTTAAAATATACAACAC
AACCCTTGTTACTTCTTCTCCACACAAGTGTGAATGAGATTGAAAAAATGAT--CAGAAATCCATCTGGTCGAGGTGCTT
TTGTCGGGTACATCTAAAACGAGTGCATTTTTAACCTCTTCTGTCGTATATGGAGCGTCTAGTCT-TGCATTCATTGCTG
GCG-TTAGTTTTTGTGGTGCACAAGAGAGAACCTCATCCATCCCCAACGTTCCCTCTGTA--GTATAGTTCTTTATAG-A
ATTCTTCCGCATGATTGTGCGACTGTTGAGGTTCCTCACAATACGACCCAGATGGGGTCTGAAACCTTTCAATTCCATTC
------TTCTTCCTTTTGCGTGTGGCCTGTTGATGAAAAAAAAACTTAGTGTTGCTATATCTCCTTCATGAATCACCACT
AAAAAAAA--GACGGGCTCAAGCATAATATTACAAATGGGCCCACTAAATCCAGCAGCTCAAAACTCCAGCTTGTTTCAG
TTCGGCCCAGAAGTAGGCCCATAGCGGCAGAAGAAATGGATTCATCGCACCTGTTCGGTCCACAAGCGCATCGCACTCTC
GGCCATTTCCGGCAGTTCCCCACCTAACCCACATCGAGAGCACTTTCTCAAANNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGGCGGCGGAAGCGGCGGAGGAGATGGGGGCGGGAGCGG
GAGCGGCGGTGGGAGAGAAGGGACCGGCGACCGCGGACAGGGCGATGGGGAAGACGGGTAGGACGGAGGAGGAGAAAGGG
GACGCGGCCACGGACAAGGGGAAGGGGTCAACGGCGGAGAAGGAAGAGAAGGGAGCGACGGCCGGGAATGAGGAAGAGGG
GGAGGA---------GGAGGAGAGAGCCAA---------GGCGGAGCAAAAGGGAGAAAATCGACCGGCATCGGCAAAGA
GGGGGCACAAGAAGAAGGCCGAAGCAGGGGAGATGGAAGGGATGTTCACATGGTTCTCTGAAATTGCATTATCTGAGAAT
GGGGCGGCGGCGGCGGAGAGGGAAAGAAGGGAGCGACAACGTTTTAGCAGAACGAAGGGACAACGGCCGGAGGAGAAGGG
AGCGATGGAAGAGGTGGCCGGCAAAAAAGAGATCTTTTTCTTCATGGCCAGTGCTGTCATCACCTTGGAGAGCTCGGATG
GGATGCTGTTCACGGTGTCGGAGGAGGCGGCACGGCTGTCCGTGCCCCTCGCCGACATGATCGACCAGGGCTGCGCCGGA
GGCATCATCCAGCTACCCAACGTGGACGCCAGGGCCCTCGACACGGTGATCGAATACTGCAACAAGCACGCCGACGCCGC
CTCTGCCAACAGCCGCGTCGATGAGGGCAGCAGCAGCTGCAACTCCGAGGCATCCGAGGAGGCGCTGATGGAGTGGGACC
GCAAGCTCGTCGACGGCCTCAGCCAGGACGCCCTCTGCGACGTCATCATCGCCGCTAAGTTCCTCCACATCAAGGGGCTC
CTCGACGCTGCCTGCCAGAAGGTCGCCGTCGTGGACATGGTCAATTGCAAGACCCCCGAGCAGATGCACCAGATAGAGGA
GGAAGACATGTGCAAATGGTTCTCTGGACTTACTCCCTTTTCTGAGAAGGGGACGGCGGCAGCGGAGGGGGCAAGAAGGG
G------------GAGAACCGTTGGTCAACGGCCGGAGGAGAAGGGAGCGATGGCAGAGGAGACAGAGCAGGTTGCTGGC
GAAAACGACACATTTTTCTTCAGGGCCAGCGGAAAAATCATCACCTTAAAGAGCTCGGATGGGATGCTGTTCAAGGTGTC
GGAGGCTGCAGCCCGGCTGTCCGTGCTCCTCGCCGACATGATCGACCAGGGCTGCGCCAAAGGCATCATCCAGCTACCCA
ATGTGGACGCCAGGGCCCTCGCCACGGTGATCGAATACTGCAATGAGCACGCCGCCACCGCCGCCACCGCCAATCCTGAC
GCCAACCACGGCGTCGCTGAGGGCAGCAGCAGCAGCAACTCCGAGGCATCCGGTGAGGCGCTGAAGGAGTGGGACCGCAA
GCTTGTCGACGGCCTCAGCCAGGACGCCCTCTACGACCTCATCATGGCCGTCAACTTCCTCCACATCAAGGGACTCCTCG
ACGCTGCCTGCCAGAAGGTCGCCGGCATGATCAAGGGCAAGAGCGTGGAGCAGACGCGCAAGATGTTCGGCATTGCCACC
GACTTCACCGAGGAGGAGGAGGAGGAACTGCGTAAAGAGAGTCCATGGGCCTTCGAAGAGTAGGAGTCCCTTCGTTCGAA
GCCATTTCT-GCGGTAACATCTCACTGTCTGTATCTGGTGGCTTAGTGGTTCTGTTCTGCCTCCTTTATCACTAATCTCC
TAGTGGTCGTTTCTAAGTCTTTGTCAAAGGTTACAGGAGTAAGGTCAACTTGATTCGTCTTCCGCGCACTT-AACCTTTT
TCATTTTGTTCTGTTGAAGAAGATTGGGATCGAATTTGTGTTTAAAGCTTCGAACTGCATGCTTCAAGTGGGATGAATGA
GTTAACCTGAATTACCTGACATTTCTCACCAGCCCCATGAATTG--CTGTTGAATTCCTTCAGCTACTCTTGATCGAAGG
TGTTGCGGATAG-----TACTATTCTTGATCTGCTTAGCTGGATTTGGAAGTTTCCTCAAAATGCATGTTATGTCTTGCC
CATTTTCTTGCAGCTGGCAATACCATACCATGATTGCTCAGTCTC-------GTGCTTGTATAAAGTTGCAGTGAATATT
TGAAATGCTTGCATGTGGCCGGTGAATGGCACATCCTGATGTGTATGTCACTGATTAGAGATACCATGAATTG-CTCTCT
GTCTGTGTTGGACTATTCTTTGATTGA------------------------------------------GCATGAGTGAA
TAGCATATATATCC-TGA-CCCCAGGCAATTGGTGGTATAAAGGGAGTTTCTTATCCCACATTGGATTGTGTGTTTTGCT
TGACTACATTCGATTAAAGAATATAGGTCCAGTAAGTATTCTG-------------------------------------
---------------------------------------------------------------------GTACTAATTTT
GGCATGTGGCTCACGCGTCTTAGTTTTTC------------TAAACTATATATTCGTTTGAAACTAACCTTATCAGTCAA
TTGTCACCATATAACGGATAAGGATCTTGTCTTGTTCTTATGTTTGAGTGTGATCTTATTATTC----GCTTGGTATTCA
GTATGATCTTA-TATTTTCTTCTGTATTTCGATGAAGGACGTGCTGC--TTCTTT-TCTT-TTACCTTTGAGATTGCACC
TTCAAGCTAGTATTAAGCTGAGTGTATCATTTGCGATTAGTAAACTCTCACCCAAATCTTAAAGAAATTAACTATACAT-
---GGAACATGCCTCATACTGGTGATGCG---ACTACCATTATTTCTTCCTGGTACAAGTGCA-TTCTGTGTTTCGCTCT
TGATGTCTTTTCAGAGGAA-------------------------------------------------------------
----------------------------------------------------------------------------
>chr3D_504
GATAA---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------AAAAATAGTGTAGC------TATCTCCTTCATGAAGCACTACT
CAAAAAAAGAGACTGGCTCAAGCATAATATTACAAATGGGCCCACTAAATCTAGCAGCCCAAAACTCCAGCTTGTTTTAG
TTCGGCCCAGAAGTAGGCCCATTGCGGCAGAAGAAATGGATTCATCGCACTGGTTCTGTCCACAAGCACACCGCACACTC
GGCCATTTCCGGCAGTTCCCCACCTAACCCTCATCGAGAGCA--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------ATGGCGGCGGAGGAGAAGCAAGAGATGGGAGCGGGAGCA-
-----GCGCCGGGAGAGAAGGGACCGACGACCGGGGACAAGGCGATGGGGAAGACGGGAGCGACGGAGGAGATGAAGGGA
GACGCGGCCGCGGATAAGCAGAAGGGGTCGACGGCGGAGAAGGAAGAGAAGGGAGCGACGGCCGGGGATGAGGAAAAGGG
GGACGA---------GGAGGAGG------A---------GGCGGAGCAAAAGGGAGAGAATCAGTCGGCGTCGGCGAAGA
GGGGGCATAAGAAGAAGGCGGAAGCAGAGGAGACTGCGGCG---------------------------------GAGAAT
GGGGCGGCGGCGACGGAGAGGGAAAGAAGGGAGCGACAAAGTTTTAGCAGAACGAAGGGACAACGGCCGGAGGAGAAGGG
AGCGATGGAAGAGGTGGCCGGCAAAAAAGAGATCTTTTTCTTCAAGGCCAGTGCTGTCATCACCTTGGAGAGCTCGGATG
GGATGCTGTTCACGGTGTCGGAGGAGGCGGCACGGCTGTCCGTGCCCCTCGCCGACATGATCGACCAGGGCTGCGCCGAA
GGCATCATCCAGCTACCCAACGTGGACGCCACGGCCCTCGCCACGGTGATCGAGTACTGCAACAAGCACGCCGACGCCGC
CTCTGCCAACAGCCGCGCCAATGAGGGCGGCAGCAGCTGCAACTCCGAGGCATCCGTGGAGGCGCTGATGGAGTGGGACC
GCAAGCTCGTCGACGGCCTCAGCCAGGACGCCCTCTGCGACGTCATCATCGCCGCTAAGTTCCTCCGCATCAAGGGGCTC
TTCGACGCTGCCTGCCAGAAGGTCGCCGTCGTGGACATGGTCAATTCCAAGACCCCCGGGCAGATGCACCAGATAGAGGA
GGAAGACATGTGCACATGGTTCTCTGGACTTACTCCCTTTTCTGAGAAGGGGACGGCGGCAGCGGAGGGGGCAAGAACCA
A---------------------TGGTCAACGGCCGGAGGAGAAGGGAGCGATGGCAGAGGAGAAGGAGCAGGTTGCTGGC
GAAAACGACACATTTTTCTTCAGGGCCAGCGGAAAAATCATCACCTTAAAGAGCTCGGATGGGATGCTGTTCAAGGTGTC
GGAGGCTGCAGCACGGCTGTCCGTGGTCCTCGCCGACATGATCGACCAGGACTGCGCCAAAGGCATCATCCAGCTGCCCA
ATGTGGACGCCAGGGCCCTCGCCACGGTGATTGAATACTGCAATGAGCACGCCGACGCCACCGCCACCGCCAATCCCGAC
GCCAACCACGGTGTCGCTGAGGGCAGCAGCAGCTGCAACTCCGAGGCATCCAGTGAGGTGCTGAAGGAGTGGGACCGCAA
GCTTGTCGACGGCCTCAGCCAGGACGCCCTCTACGACCTCATCATGGCCGTCAACTTCCTCCACATCAAGGGACTCCTCG
ACGCTGCCTGCCAGAAGGTCGCCGACATGATCAAGGGCAAGAGCGTGGAGCAGACGCGCAAGATGTTCGGCATCGCCACC
GACTTCACCGAGGAGGAGGAGGAGGAACTGCGTAAAGAGAGTCCATGGGCCTTCGAG---TAAGAGCCATTT--------
---AATTCTAATGGTAACATCTCA----CTGTATCTGGTGGCTTAGTGGTTCTGTTCTGCCTCCTTTATCACTAATTTCC
TAGTGGTC-----------TTTGTCAAAGATTATAGGAGTAAGGTCAACTTGATTCGTCTTTCACGTGC-TAAACCTTTT
TCATTTCATTCTGTCGAAGAAGTTTGGGATCAAATTTGTGTTTAAAGCTTTGAACTACATGCTTCAAGTGG-ATGAATGA
GTTAACCTGAATTACCTGACATTTCTCACCAGCCCCATGAATTG--CTATTGAATTTCTTCAGCTACTCTTGATCGAAGG
TGGTGTCGATAG-----TACTATTCTTGATCTGCTTATCTGAATTTGAAAGTTTCCTCAAAATGCATGTTATGCCTTGCC
CATTTTCTTGCAGCTGGCAATACCATACCATGATTGCTCATTCTCTGCGGTTGTTCTTGTATAAAGTTGCAGTGAATATT
TGAAAGGCTTGCA--------GTGAATGGCACATCCTGATGTTTATGTCACTGATTAGAGATACCATGAATTG-CTCTCT
GTCTGTGTTGGACTTTTCTTTGATTGA------------------------------------------GCATGAGTGAA
TAGCATATATATCC-TGATCCCATGCAATTGGT-----------GAGTTTCTTATCCCACATTGGATTGTGTGTTTTGCT
TGACTACATTTGGCTGAAGAATATAGGTCCAGTAAGTATTCTG-------------------------------------
---------------------------------------------------------------------GTAGTAATTTT
GGCATGTGGCTCATGCGTCTTAGTTTTTC------------TAAACTATGTATTCTTTTCAAACTAACCTTATAAGTCAA
CTGTCACCATGTAACGGATAAGGATATTGTCTTGTTCTTAT-TTTGAGTATGATTCAGCTCATACTATGCTTGGTTTTCA
GTATGGTCTTATTATTTTCTTCTGTATTTCGATGA-GGACATACTGTTTTTTTTT-CTTT-TTTCCTTTGAGCTTGCATC
TTCTAGCTAGTATTAAGCTGCGTGTATCATTTGCGATGCGTAAACTCGGACCCAAATGTTAAAGAAATTAACTATACAGT
CAGGGAACATGCCTCATACTGGTGATGCTAGTACTACCATTATTTCTTCCTGGTACATGTTTATTTCTGTTTCTCGCTCT
TGATGTCCTTTCAGAGGAACTAGTAGAGTTGAGCGCGCTTTGCTGTGCCGTTGGTGTTATTGGAATTTCATAATTTATTT
ACTCCCTCTATTTCAAAATATTAGATGCATTAGTTTTGGAAAAGCCAAAACTCTTCAAGTTTGATTAAATTTGTAG
>SNPs
-SS-------S----------------S--S----SS--S----SSSSSSS----S----S---------S---------
-----SS-S-------------SS---------S----SS------------------SS--------------------
-----------------S--------S-S--S-S---S----S-----SS-S--S-----S-----S-------SS----
------S---------------------S---S--------S-----------------------S--------------
S--S---------------------------SSS----------S----------S----SS----------------S-
-----S---S------------------------------S------S----S-----S---SS---------------S
SSSSSS---------S----------S---------------------S-----------------------S--S----
-----------------------------------------S--S---------------------------------S-
---------------------------------------------------S-SSSS-SS--S-----------------
-----------------------------------S--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------S---------
-----------------------S--------------------------------------------------------
------------------------------------------------S-------------------------------
------------------------------SSSSSSSSS----------------S------------------------
S-----------------------------------------S---S---------------------------------
--S-S-S-----------------------------------------S-------------------------------
----------------S---------------------------------------------------------------
-----------------------------------S--------------------------------------------
------------------S----------------------------S--------------------------------
---------------------------S----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------S-------S----------------------------------------------------------------
----------------------------------------------S-------S-------S-----------------
---------------------S----------------------------------------------------------
------S-------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------S-----------S--------------------------------------
-------------------------------------------------S------------------------------
----------------------------------------------------------S---------------------
--------------------------------------------------------------------------------
----------------------------------------S--------------------------------------S
------------------------------------S------------------------------------S------
---------------------------------------S----------------------------------------
--S-----------------------------------------------------------------------------
---------------------------------------------S-------S-------S---S--------------
-----------------S----S---------S-----------------------------------------------
-S--------------------------------S-------------------------------------------S-
--------------------------------------------------------------------------------
-------------------------------------------------------S------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
S------------------------------------------------------S------------------------
----------------------------S---------------------------------------------------
------------------------------------------------------------S-------------------
-----------------------------------------------S--------------------------------
------------S--------------S----------------------------------------------------
-------S----------------------S----------------SS---------------S---------------
-------------------S--------------------------------------------------------
>forward_695
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------ATGGATTCATCGCACCCACA-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------
>reverse_3102
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------GTGCTTGTTATGCCTTGCC
C-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------
