>input_sequence_49458
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------ATGGCCGACGACGACAGCGGGAGCCCCCGGGGCGGCGGCGGGGTCAGGGAGCAGGACCGCTTCCTCCCCAT
CGCCAACATCAGCCGCATCATGAAGAAGGCCGTGCCGGCCAACGGCAAGATCGCCAAGGACGCCAAGGAGACCCTCCAGG
AGTGCGTCTCCGAGTTCATCTCCTTCGTCACCAGCGAGTGAGTTGCCCGCCGCTAGCTGCTCGCTGCCACCGTCATCATG
CCACCTGGCCTTCGAA----------CCTCGGCCTCGAACGAACTCGGCCGGGCTGGTTTTGTTTGTCTTGGGTGGCCGG
AGTTGTGACTTTTCGCTGTGGTTTGGTTTGGTTTGGTAGGGCCAGCGACAAGTGCCAGAAGGAGAAGCGCAAGACCATCA
ACGGGGACGATCTGCTCTGGGCCATGGCCACGCTCGGATTCGAGGAGTACGTAGACCCCCTCAAGATCTACCTGCAAAAG
TACAGAGATGTAATCATGGCTCTTGCTCACTGTCAGTACTTGCTGCAAATGACAATAATTCTCTTGTTTTGTGTCAT-CA
TCTCACCTCGCTTCTTCTCTGTCTTCCTTGCAATTTTCTGGACGGGCGCGGTGATTGCAGATGGAGGTATGTGATCTTGT
AATCAATTCGACATA-----------CATGATATTGATTCGCTGATACGTTTCATACCAATGCAAAACAAAATGCAGTTT
CCTCTAAGTCCTAGTTTAAACATAACCACAAAAGGGTTAGATCCTGCCTACTTAGGCCACATAACCTGCGTTAGATCCTT
TGAGCTGTGTCCCTTTAATCAGGTATATAGTTGTCACTTGATGTGAAATACACATGACCTATGTACTTTGAAGCTTGCAA
GTTCCTCGCGTGAACACCTGAATAAAACCCGCATGCTTTCCAGTTTCATATACCGTGAAAGAAACTTAGTTGCATTCATG
AAGGCTGTTCCAGCTTTCAAGCAATAAACTAGTTCTAACTTCTAAGCAAGGTTGCATGATTGCTCTCTAATACTTAAGTT
GGTACATACTTCCCACTCATTTTGTTGGACTGCATTATGGCCTTGCAAGCTTCTGTTTCTATCTTGTGTGCTTTATGTGA
ACAGTATGTACTGAATATTAAC-GACTCTCTTGTCTATTACTTTCCTGTAGGGTGATAGTAAATTGACCTCAAAATCTGG
TGAAGGATCCGTGAAGAAAGATATAATTGGTGCTCATAGTGGTGCGACTAGCTCAAACGCCCAAGCGGTTAGTATTTGCA
ACTTGGGTTCCTTTGCTCCTAATG-TTGCTTGAAACTGACTTGCTCATATTCTTTTAGATGGTTCAGCATGGAGCTTACG
CCCAAGGGATGGGTTATATGCAACCCCAGGTAACCTATCATACCATCACTTGCCATTACAACCCTATACTTCGATTTTGA
AGCTAAACATGATACAGTTCTGTATAGCAATCTTCAATCATCATATTCTTTTCCTGACGCTCTTCCCCTTTACATCATCA
GTACCATAATGGGGACACCTGAAACTGA----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
>chr3D_1_TraesCS3D01G347000
ATCTCAACCTAATGTGGGAAGGTGTCTGTGTATTTCGCCGTGTTGAGCAGCCTAAAGAAGATAGAATGGAGGTGCGTGCT
CCTTTGTTCTGAAGCTGCTATCGCTGAAGCCTATAGCGTAGCTGCCTAAAGAAGATAGAATGGAGGTGCGTGCTCCTTTG
TTCTGAAGCTGCTATCGCTGAAGCCTATAGCGTAGCTGCAGGATTTGGTGATGGCGATTGAGAGCAGCAATTTAGGCAGA
--CTGTAGATTTGATGAT--CGATTCGGAACATCCAGTTCAAGCATTGCCAAAGTAGTGCATGAAATAATTGGTTTTGCT
ATTCATAAAATTA------------------ACTTGTGGATGATGTATACATTATTTGATGATTGACATAGTTTGCAATA
GGAAATTGTGTTAAAAAACGAAGATAGATCCTGCAATTTTTTTTTAGAAATTTTATGGTTTTTAGATATTTTTTGCGAAT
CAATTTTTTTATATTAGGCTTTTCGATGGGTGATTTTTAGGGGTATTTTTTTTAGATTAGATGAAAATTCGTGGTGAAGC
CCAAGCAGCTTCTTTTTGTTTCGAGAACAGAGCCCCCAAAAAGCCCTCCGAA-----CATCCCTCAACGAAAGAAGCCCA
TCTAACATGGTGCTAGAAGAAGCTCACCACGGCACTTTTAA--CCCCACGGGGTCCACCGGCAGGGTGAGGCCCCACCCG
CAGCCTCCTCTCTTCTCTCTCTTCCCGACCGACGAACGGCCCGGATCCGTCGTCTTCCCCATCGCACCGGCCCGGGCCGC
GTCGCCTTCTCCAGCGTCCGATCTCGCATTCCCCACCCCTCCTCGCAGCGCCAACCACCGTC-TCCTCCTCCCCCCTCCC
TTCTCTCCCCTCCGCTCCTCCCCCCC--CGCGCGCGCGTTTTTTATAAGGTGCGTTTGATTTCGATCCCTACCCT--CCC
ATCCCCTCTCGATCGCGCGCCGTGGATCCGTGTC---CT------------GATTTGCTCGCGATGGATCTAGGGTTTCG
GGGCGCGGGATGGCCGACGACGACAGCGGGAGCCCCCGGGGCGGCGGCGGGGTCAGGGAGCAGGACCGCTTCCTCCCCAT
CGCCAACATCAGCCGCATCATGAAGAAGGCCGTGCCGGCCAACGGCAAGATCGCCAAGGACGCCAAGGAGACCCTCCAGG
AGTGCGTCTCCGAGTTCATCTCCTTCGTCACCAGCGAGTGAGTTGCCCGCCGCTAGCTGCTCGCTGCCACCGTCATCATG
CCACCTGGCCTTCGAA----------CCTCGGCCTCGAACGAACTCGGCCGGGCTGGTTTTGTTTGTCTTGGGTGGCCGG
AGTTGTGACTTTTCGCTGTGGTTTGGTTTGGTTTGGTAGGGCCAGCGACAAGTGCCAGAAGGAGAAGCGCAAGACCATCA
ACGGGGACGATCTGCTCTGGGCCATGGCCACGCTCGGATTCGAGGAGTACGTAGACCCCCTCAAGATCTACCTGCAAAAG
TACAGAGATGTAATCATGGCTCTTGCTCACTGTCAGTACTTGCTGCAAATGACAATAATTCTCTTGTTTTGTGTCAT-CA
TCTCACCTCGCTTCTTCTCTGTCTTCCTTGCAATTTTCTGGACGGGCGCGGTGATTGCAGATGGAGGTATGTGATCTTGT
AATCAATTCGACATA-----------CATGATATTGATTCGCTGATACGTTTCATACCAATGCAAAACAAAATGCAGTTT
CCTCTAAGTCCTAGTTTAAACATAACCACAAAAGGGTTAGATCCTGCCTACTTAGGCCACATAACCTGCGTTAGATCCTT
TGAGCTGTGTCCCTTTAATCAGGTATATAGTTGTCACTTGATGTGAAATACACATGACCTATGTACTTTGAAGCTTGCAA
GTTCCTCGCGTGAACACCTGAATAAAACCCGCATGCTTTCCAGTTTCATATACCGTGAAAGAAACTTAGTTGCATTCATG
AAGGCTGTTCCAGCTTTCAAGCAATAAACTAGTTCTAACTTCTAAGCAAGGTTGCATGATTGCTCTCTAATACTTAAGTT
GGTACATACTTCCCACTCATTTTGTTGGACTGCATTATGGCCTTGCAAGCTTCTGTTTCTATCTTGTGTGCTTTATGTGA
ACAGTATGTACTGAATATTAAC-GACTCTCTTGTCTATTACTTTCCTGTAGGGTGATAGTAAATTGACCTCAAAATCTGG
TGAAGGATCCGTGAAGAAAGATATAATTGGTGCTCATAGTGGTGCGACTAGCTCAAACGCCCAAGCGGTTAGTATTTGCA
ACTTGGGTTCCTTTGCTCCTAATG-TTGCTTGAAACTGACTTGCTCATATTCTTTTAGATGGTTCAGCATGGAGCTTACG
CCCAAGGGATGGGTTATATGCAACCCCAGGTAACCTATCATACCATCACTTGCCATTACAACCCTATACTTCGATTTTGA
AGCTAAACATGATACAGTTCTGTATAGCAATCTTCAATCATCATATTCTTTTCCTGACGCTCTTCCCCTTTACATCATCA
GTACCATAATGGGGACACCTGAAACTGAAGATCAGGCAATTTTCGGCAATGGGTATTGCTCCATGAGGTAATTTTGTTGT
ACTGACAAGCATGTTATATGTGAGGCAAATTCAGACAATCTTAGACAGCCCTAAAAATTAGTACCCCTTCTCTTCTTCTT
TTCAGTGGTTTGTATAGTCCTCTTCATGAATCTTCTGCCCTTTTAGCAAGTGAATGAAAAATACGTATCTGTGCTGAATC
ATAGCAGATTCTCTTGATGCT--ATGCATGTTTCATGCTTCCTCTTTCTTCAGTAAATTTCACAAAACTGTCAGCATTTT
GAACAAATTCATCGCATAACTTAAGATATAGTTATT-CTTTGACATCAAAACAGTTGAATACACTGTTGTATCTCAAATC
TCTTGAATTAAGGGTTGACTCTTATGGTATGTGCAACCACTAGAATCTCTAGAATGTTTTTCTTTGATGGCTCGAATTGT
ATGAGAATCCCTAGCTACCATACTTGAGAAACATGGCCCGCCTGTCTTGCACCTAGCTATTTGAGACTTCACCAAGGC--
TGGGTTTCAGTATGGTTATGTGAAATTGTTCAACCTACATTGGAGTTTTTACAATAGCGGGCTTGTTAAATCTGCAACTC
TGAAATACTC----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------TATAATAGTTTGCACAAAACGCAACTCTACTCTCTTTCATCTGACAC--CA
CTTGTTTTGCTTGCTGCAGTGGTTATCTATCTGTTAAGGAAGCCGCCCCAACATTAGGTTCATGATGATCATTGGCTGGA
AACTAAAGCACCTGGAAGGGTGCTTAAC-------------------------AGTTGGTTGTGATGGCTGCCTCCAAGA
TGTAAATTGCTTCCGAGAGAATAGATTCACCTATTATGGTTTAGTGCTTGTTTTTATCTGTACATTCAGAATAATTCAGC
CGTTGGTAGTTTGGCAATCTTTTG-TTTCAGATATTTGTATTAGGAAGCATAAATATATTACAACTGGGTATTAACTTAT
AGTTGTGCGGTGTTTCTTGCGCCCGCTCCGGGGTGTAAGG
>chr3A_201
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------GGATTTGGTGATGGCAATTGTGAGCAGCAATTTAGGCAGA
CTCTGTAGATTTGATGATGGCGATTCCAAACATCCAGTTCAAGCATTGCCAAAGCAGTGAATGAAATAATTGGTTTTGCT
ATGATTGTAAATCCCCTTGTAATTAAAAAACACTTGTGGATGATGTATGCATCATTTGATGATTAACAGTG---------
--------------AAAACGAAGATAGATCCTACAAAAA--TTTTAGAAATATTATGTTTTTT-----------GCGAAT
GATTTTTTTTAGATTAGATTTTTTGAGGGGTGATTG-----------TTTTCTAGATTAGAGGGAAATTTATGATGTAGC
CCAAGCAGCCTTTCC-TGTTTCGAGAACAGAGCCCAAAAGAGGCCCTCCGAATGTTTCATCCCTCAACGAAAGAAGCCCA
TATAACATGTTGGTAGAAGAAGCCCACCATAGCACTTTTCAATCCCCGGGGGGTCCACCGGCAGGGCGAGGCCCCACCCG
CAGCCTCCTCTCTTCTCTCTCTTCCCGACCGACGAACGGCCCGGATCCGTCGTCTTCCCCATCGCACCGGCCCGGGCCGT
CTCCCCTTCTCCAGCGTCGGATCTCCCATTCCCCACCCCTCCTCGCAGCGCCAACCACCGTCCTCCTCCTCCCCCCTTCC
TTCTCTCCCCTCCGCTCCTCCCCGCGCGCGCGCGCGCG-TTTTTATAAGGTGCGTTCGATTTCGATCCCTCCCCT--CCC
GAT-----------------CGCGCGCCCTGACGAATCCATGGCCTGACCCGATTTGCTCGCGATGGATCTAGGGTTTCG
GGGCGCCGGATGGCGGACGACGACAGCGGGAGCCCCCGGGGCGGCGGCGGGGTCAGGGAGCAGGACCGCTTCCTCCCCAT
CGCCAACATCAGCCGCATCATGAAGAAGGCCGTGCCGGCCAACGGCAAGATCGCCAAGGACGCCAAGGAGACCCTCCAGG
AGTGCGTCTCCGAGTTCATCTCCTTCGTCACCAGCGAGTGAGTTGCCCGCCGCTAGCTGCTCGCTGCCACCGTCATCATG
CCACCTGGCTTTCGAA----------CCTCGACCTTGAACGAACTCGGCCGGGTTGGTTTTGTCTTG-------GGCCGG
AGTTGTGACTTTTCGCTGTGGTTTGGTTTGGTTTGGCAGGGCCAGCGACAAGTGCCAGAAGGAGAAGCGCAAGACCATCA
ACGGGGACGATCTGCTCTGGGCCATGGCCACGCTCGGATTCGAGGAGTACGTAGACCCCCTCAAGATCTACCTGCAAAAG
TACAGAGATGTAATCATGGCTCTTGCTCGCTGCTGTTAG----TACAAATGACAATAATTTTCTTGTTTTGTATCTCC-A
TCTCACCTCGCTTCTTCTCTGTCTTCCTTGCAATTTTCTGGACGGGCGCGGTGATTGCAGATGGAGGTATGTGATCTTGT
AATCAATTCTTTTGTAATACCATCGGCATGCTATTGATTCACTGAAATTTTTCATAC-AATGCAAAACAAAATGTAGTTT
CCTCTTAGTCCTAGTTTAAACATAGCCACAAAAGTACC----CCTGGCTGCTTAGGCCGCATAA--------------TT
TGAGCTATGGCCCTTTAATCAGGTATATAGTTGTCACTTGATATGAAATACACATGACCTATGTACTTTGAAGCATGCAA
GTTCCTCGCGTGACCACCTGAATAAAACCCACATTCTTTCCAGTTTCATATACCATGAAAGAAACATAGTTGCATTCATG
AAGGCCATTCCAGCTTTCAAGCAATA----AGTTCTAACATCTAAGCAAGGTTGCATGAATCCTCTCTAATACTTAAGTT
GGTACATACGTCCCACTCATTTTGTTGGACTGCATTATGGCCTTGCAAGCTTCTGTTTCTATCTTGTGTGTTTTATGTGA
ACAGTATGTACTGAATATTAACCGACTCTCTTGTCTATTACTTTCCTGTAGGGTGATAGTAAATTGACCTCAAAATCTGG
TGAAGGATCCGTGAAGAAAGATATAATTGGTGCTCATAGTGGTGCGACTAGCTCAAACGCCCAAGCGGTTAGTATTTGCA
ACTTGGGTTCCTTTGCTCCTAATG-TTGCTTGAAACTGACTTGCTCATATTCTTTTAGATGGTTCAGCATGGAGGTTACG
CCCAAGGGATGGGTTATATGCAACCCCAGGTAACCTATCATGCCATCACCTGCCATTACAACTCTATACTTTGATTTTGA
AGCTAAACATGATACAGTTCTGTATTGCAATCTTCAATCATCATATTCTTTTCCTGACGCTCTTCCCCTTTACATCATCA
GTACCATAATGGGGACACCTGAAACTGAAGATCAGGCAATTTTCGGCAATGGGTATTGCTCCATGAGGTAATTTTGTTGT
ACTGACAAGCATCCTATATGTGAGGCAAATTCAGA--------GACAGCCCTAAAAATTAGTACCCCTTCTCTTCTTCTT
TTCAGTGGTTTG--TAGTCTTTTTCATGAATCTTCTGCCCTTTTAACAAGTGAATTAAAAATACGTACCTGTGCTGAATC
ATAGCAGATTCTCTTGATGCTGTATGCATGTTTCATGCTTCCTGTTTCTTTAGTAAATTTCACAAAACTGTCAGTATTTT
GAACAAATTCATCACATATTTAAGATAGTC---ATT-CTTTGACATAAAAACAGTTGAATACACTGTTGTATCTCGAATC
TCTTGAATTAAGGGCTGACTCTTATGGTACGTGCAATCACTAGAATCTCTAGAATGTGTTTCTTTGATGGATCGAATTGT
ATGAGAATCCCTAGCTACTATACTTGAGAAACATGGCCCGCCTGTCTTGCACCTAGCTATTTGAGACTTCACCAAGGCTG
TGGGTTTCAGTATGGTTACGTGAAATTGTTCAACCTACATTGGAGTTTTTACAATAGTGGGCTTCTTAAATCTGCAACTC
TGAAATACTCCCTCCGTTTCTTTTTAGTCTGCATATAAGGTTTGGTCAAAGTCAAGCTTTGTAAAGTTTGACTAACTTTA
TATTAAAAAATATGAACATTGACAATATGAAATCAATATTATCAGATGCACCACAAAATGTATTTTCATACTATATAGTT
TTAATATTGTAGATGTTCATATTTTTTTATATAAATTTAGTCAAACTTTGTGTAGTTTGACTTTGACCAAATCTTATATG
CGGAGTAAAAAGAAACGGAGGGAGTACTCTATAATAGTTTGCACAAAACGCAACTCTACTCTCTTTCATCTGACACAACA
CTTGTTTTGCTTGCTGCAGTGGTTATCTATCTGTTAAGGAAGCCGCCCCAACATTAGGTTCATGATGATCATTGGCTGGA
-------------------------AAC-------------------------AGTTGGTTGTGATGGCTGCCTCCAAGA
TGTAAATTGCTTCCGAGAGAATAGATTCACCTATTATGGTTTAGTGCTTGTTTTTATCTGTACATTCAGAATAATTCAGC
CGTTGGTAGTTTGGCAATCTTTTGTTTTCAGATATTTGTATTAGGAAGCATAAATATATTGCAACTGGGTGTTAACTTAT
AGTGGTGCGTTGTTTCCTGTGCCCTCTCCGGGGTGCAAGG
>chr3B_628
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------AGAAGAAGCCCACC----CACTTTTCAATCCCCGGGGGGTCCACCGGCAGGGCGAGGCCCCACCCG
CAGCCTCCTGTCTTCTCTCTCTTCCCGACCGACGAACGGCCCGGATCCGTCGTCTTCCCGATCGCACCGGCCCGGGCCGC
GTCGCCTTCTCCAGCGTCCGATCTCCCATTCCCCGCCCCTCCTCGCAGCGCCAACCACCGTCCTCCTCCTCCCCC-TCCC
TTCTCTCCCCTCCGCTCCTCCTCGCGCGC----GCGCG-TTTTTATAAGGTGCGTTCGATTTCGATCCCTCCCCCTCCCC
GTCTCCTCCCGATCGCGCGCCGGGCGCCCTGACGAATCT------------GGTTTGCTCGCGATGGATCTAGGGTTTCG
GGGCGCGGGATGGCCGACGACGACAGCGGGAGCCCCCGGGGCGGCGGCGGGGTCAGGGAGCAGGACCGCTTCCTCCCCAT
CGCCAACATCAGCCGCATCATGAAGAAGGCCGTGCCGGCCAACGGCAAGATCGCCAAGGACGCCAAGGAGACCCTGCAGG
AGTGCGTCTCCGAGTTCATCTCCTTCGTCACCAGCGAGTGAGTTGCCCGCCGCTAGCTGCTCGCTGCCACCGTCATCATG
CCACCTGGCTGTCGTCCCTGCCTTGGCCTCGGCCTCGAACGAACTCGGCAGGGCTGGTTTTGTTTGTCTTGGGTGGCCGG
GGTTGTGACTTTTCGCTGTGGTTTGGTTTGGTTTGGTAGGGCCAGCGACAAGTGCCAGAAGGAGAAGCGCAAGACCATCA
ACGGGGACGATCTGCTCTGGGCCATGGCCACGCTCGGATTCGAGGAGTACGTAGACCCCCTCAAGATCTACCTGCAAAAG
TACAGAGATGTAATCATGGCTCTTGCTCACTATCAGTACTTGCTACAAATGACAATAATTCTCTTGTTTTGTATCTCCCA
TCTCACCTCGCTTCTTCTCTGTCTTCCTTGCAATTTTCTGGACGGGCGCGGTGATTGCAGATGGAGGTATGTGATCTTGT
AATCAATTCGACGTA-----------CATGCTATTGATTCACTGATACGTTTCATACGGATGCAAAACAAAATGCAGTTT
CCTCTTAGTCCTAGTTTTAACATAACCACAAAAGCGTTAGATCCTGCCTACTTAGGCCGCATAACCTGCGTTAAATCCTT
TGAGCGGTGGCCTTTTAACCAGGTATATAGGTATCACTTGATATGAAACGCAC--GACCTATGTACTTTGAAGCTTGCAA
GTTCCTTGCGTGAAAACCTGAATAAAACCCGCATGCTTTCGAGTTTCATATACCATGAAAGAAACATAGTTGCATTCACG
AAGGCCGTTCCAGCTTTCAAGCAATAAACTAGTTCTAACTTCTAAGCAAGGCTGCATGAATGCTCTCTAATACTTAAGTT
GGTACATACTTCGCACTGATTTTGTTGGATTGCATTATGGCCTTGCAAGCATCTGTTTCTATCTTGTGTGCTTTATGTGA
ACAGTATGTACTGAATATTATTCGACTCTCTTGTCTATTACTTTCCTGTAGGGTGATAGTAAATTGACCTCAAAATCTGG
TGAAGGATCCGTGAAGAAAGATATAATTGGTGCTCATAGTGGTGCGACCAGCTCAAACGCCCAAGCGGTTAGTATTTGCA
ACTTGGGTTCCTTTGCTCCTAATGTTTGCTTGAAACTGACTTGCTCATATTCTTTTAGATGGTTCAGCATGGAGCTTACG
CCCAAGGGATGGGTTATATGCAACCCCAGGTAACCTATCATACCATCACTTGCCATTACAACTCTATACTTCGATTTTGA
AGCTAAACATGACACAGTTCTGTATTGCAATCTTCAATCATCATACTCTTTTCCTGACGCTCTTCCCCTTTACATCATCA
GTACCATAATGGGGACACCTGAAACTGAAGATTGGGCAATTTTCGGCAATGGGTATTGCTCCATGAGGTAATTTTGTTGT
ACTGACAAGCACGTTATATGTGAGGCAAATTCAGACAATCTTAGACGGCCCTAAAAATCAGTACCCTTTCTCTTCTTCTT
TTCAGTGGTTTGTATAGTCTTTTTCATGAATCTTCTACCCTTTTAACAAGTGAATTAAAAATACGTATCTGTGCTGAATC
ATAGCAGATTCTCTTGATGCTGTATGCATGTTTCATGCTTCCTGTTT-------AAATTTCGCAAAACTGTCAGTATTTT
GAACAGATTCATCGCATAGCTTAAGATATAGTCATTCCTTTGACATAAAAACAGTTTAATACACTGTTGTATCTCGAATC
TCTTGAATTAAGGGTTGACTCTTATGGTACGTGCAACCACTAGAATCTCTAGAATGTTTTTCTTTGATGGCTCGAATTGT
ATGAGAATCCCTAGCTACCATACTTGAGAAACATGGCCCGCCTGTCTTGCACCTAGCTATTTGAGACTTCACCAAGGC--
TGCGTTTCAGTATGGTTATGTGAAACTGTTCAATCTACATTGGAGTTTTTACAATAGTGGGCTTCTTAAATCTGCAACTC
TGAAATACTC----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------TATAGTAGTTTGCACAAAACGCAACTCTACTCTCTTTCATCTGACACAACA
CTTGTTTTGCTTGCTGCAGTGGTTATCTATCTGTTAAGGAAGCCGCCCCAACATTAGGTTCATGATGATCATTGGCTGGA
-------------------------AACTAAAGCACCTGGAAGGGTGCTTAACAGTTGGTTGTGATGGCTGCCTCCAAGA
TGTAAATTGCTTCCGAGAGAATAGATCCACCTATTATGGTTTAGTGCTTGTTTTTATCTGTACATTCAGAATAATTCAGC
CGTTGGTAGTTTGCCAATCTTTTGTTTTCAGATATTTGTATTAGGAAGCATAAATATATATCAACTGGGTATTAACTTAT
AGTGGTGCGGTGTTTCCTGCGCCCGCTCCGGGGTGCAAGG
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------S----S-------------------
--------------------------SS--------------------------S----S--------------------
--SSS-SS--S-S-----------------------------------S---S-----------S---SS-SSSSSSSSS
SSSSSSSSSSSSSS------------------S---SSSSS----------S-----S-----SSSSSSSSSSS------
S-S--------S-----SS----S--S--------SSSSSSSSSSSS----S---------S-S-----SS--S--S---
---------S-S-SSS-------------------SS--S-S--------------------------------------
-S-------S--S----------S-----SS--------S-------SS-----------------S-------------
--------------------------------------------------------------------------------
-------------------------S------------------------------------------------------
-----------------------S-S------------S-----------------S-------------S---------
S--S----S-------------S-SSS--SSSSS----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------S----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------S---------------------------S--SS---
--------------------------------------------------------------------------------
------------S-----------------S---------S----------------S----------------------
-----S----------------------------S-----------------------S--------------S------
---------S--------------------------------S-------------------------------------
------------------------------------------------------S----------S--------------
-----S-----------------------------------------------------S--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------S-----------------
-------------------------S------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------S-S-----------------------S---------S------------------------
-------------------------------------------S------S-----------------------S-----
------------------S-------------S-------------S----------------------------S----
-----------------------------S--------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------S------S---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
SSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------S-------------------
---S------------S------------------S----
>forward_113
--------------------------------------------------------------------------------
-------------GCTGCTATCGCTGAAGCCTA-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
>reverse_1834
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------GATCCTT
TGAGCTGTGTCCCT------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
>forward_187
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------GCTGCTATCGCTGAAGCCTA-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
>reverse_1986
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------TTAGTTGCATTCATG
AAGGCTGT------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
>forward_596
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------TGTTTCGAGAACAGAGCCCC--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
>reverse_2060
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------TTGCTCTCTAATACTTAAGTT
GGTACA--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
>forward_680
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------AGCTCACCACGGCACTTTTA----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
>reverse_2463
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------CCTATACTTCGATTTTGA
AGCTAAACA-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
>forward_689
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------CACGGCACTTTTAACCCCAC-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
>reverse_2740
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------CTCTTCATGAATCTTCTGCCCT---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
