>input_sequence_49409
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--------ACCGCGTAG-----------CCCGCCACGCCAGCCAGAGCATCCCGCCCG---CTCTCGCCTCGGTGTCGCC
GCCGCCCATGGCCGTCGCCAAGAGCAAGGCAGGCAAGCACGCCGCCCCGCTGCTCGGCAAGTACGAGCTCGGCCGCCTCC
TCGGCCGCGGCACCTTCGCCAAGGTCTACCACGCGCGCTCCCTCGTCGGCGGCGAGGCCGTGGCCATCAAGGTGCTCGAC
AAGCCCGAGCTGGCCGCCACGGCCGGCATGGACGCGCGCGTGCTCGGCGAGGTCTCCGCCATGCGCCGCCTCCGCCACCC
CAACGTGCTGCGCCTCCACGAGGTGCTCGCCACGCGCTCCAAGGTCTACCTCGTCATGGAGCTCGCCCCCGGCGGCGACC
TGCTCTCCAGGCTCGCCTCGCTCCCGTCGCGCCGCCTCCCCGAGCACGCCGCGCGCCGCGTCTTCCTCCAGCTCGTCTCC
GCGCTCATCTACTGCCACGCGCGCGGCGTCTCCCATCGCGACGTCAAGCCGCAGAACGTCCTCATCGACGCCGACGGCAA
CCTCAAGGTCTGCGACTTCGGCCTCGCCGCGCTCCCGGAGTCCCACCGCGACGACGGCCGCCTGCACACCGCCTGCGGCA
CGCCCGCCTTCGCCGCGCCCGAGGTGCTCCGCCGCAAGGCCTACGACGGCGTCAAGGCCGACGCATGGTCCTGCGGCGTC
ATCCTCTACGTCCTCCTCGCCGGCCGCCTGC----CGTTCGACGACTCCAACATCGCCGAGATGTGCAGGAAGGCGCACC
GCCGCGAGTACACGCTCCCGGAGT-GGGTGTCCCAGCCGGCGCGACGCCTCGTGAGCCGCCTGCTCGACCCAAACCCAGC
CACCCGCCTCACGGTCGCCGAGCTCT---CCAGCCACCCGTGGT---TCAAACGGTCGCTCAGCCTGGACTCGCAGCTCG
GCAGCCTCCTCGGCGGCGCGCCGGAGCGCGACCTCTTGTTCCAGGCCCCGCCGACGCTCAACGCGTTCGACATCATAAGC
ATGTCGCCGGGGCTCGACCTGTCGGGACTCTTCGGCGAGAACCGGCGGAGCCGGGAGAAGCGGTTCATGACGACGGCGTC
GCCGGAGCAGATGGTCGAGCAGCTCGGGCACTCGGGCGCAAAGCTCGGTTACTTCATGGTGGGCAAGAAAGGAGTAGAGC
GGCTGCCACTGGGCGGCCTGTCGGGGCTCGTGGCCATGTCCATGGAGATGTCGGAGGTGGCGCCGCCCCTGATGCTCGTC
GAGCTTCGGCTGGAGGCAGGCGACGAGGAG---GAGGTCCAGGCGTTCGGATGGGACGCGCTTAGGACGGAGCTTGGGGA
GGTGGTCATGGCGTGGCATGGATGCGAGGAATTGTGAGGAGGAGTTGGGGGATGTACATGTATGATCTGATGCCAGAAAG
AGCTAACTAGGACTTTGTGGCAGATTGAAGGGGGTAGATTTGTTATTAGTTCATTCACTCTGA-TTTTGATGCTTGTGAT
TAGAAATTTTGTGGGAATGAATCTAGATTCTGTGT---------------------------------------------
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>chr5B_1_TraesCS5B01G381500
GATCGGCGTGGTTCTCCTGATATTTCTGCGCCCCTTCCCTTCCTCTCCGCGTCCACTAGTACAGCAAAGCCCAGCTTCGC
GGTTCATGGGGGATGATTCCCTCCTACGCTCCGGGACCCAGCCCCACCAGCA------GCTACTGCCTTTCTCTCTTGG-
----CCCCCGGCAATAGCAAGGGCCGACATGCCGATATACGTGCAAATTGAGTGACACCAGCAGGGACGGGAACACCT-C
CCCCTCCCCACAAACCAACAAATTTGTGCATAGGCCGGTAGCTTCTACAGTGAGATCTT-TTTTCACAACTTCTCACTAC
ACAGCAACACTCCATTTCCAAAAGAAATAAAAGTTGTCAGTTACTTGCTTTTTTTCC----AAATAAAGCTATTTTCACT
GCACATCTTTTTAGAAGAATTATTGAACGTTAATTAGACAGTTTGTCAGGCGTGCGCCTTTATTTATTTATGTACTTG-G
ATACAAACCGACGATTCTGCGTTTAGTTCGAGTGTAAGG-----TCTGGCATGTTTGCAGAAATGAAATGAAATAGAAAG
AAAA---TAGTACAAGATGAAATCTATACTTGATGAGGTAAAAGACAACTTGGCGCAGATATTTTTTTATCGGATTTTGG
CATATATATTAGTATATTTTACACTTGATATTTTATAAAGGATTTTTATCACACGTAGATCTAATATATATCCAGGTGAA
AGCACACTGACAGCTCAGTCCTCACCGTGACCTGTGAAGTCCAGCTTCGGCCGGACCATATCTTGCTGCCAATGAAGAAG
ATCTAGTTTTATTATGCTTAAT-----AAAACGAATATTATGTAGTAATATCTACGGTCCAATTACTATTTGTTTCTCCG
AGGCGAATG---CACGAGAAGTA------------AACACTCTTCTGCCAGCACTAATACAAAAGC--TAGAGACAAAAA
CAGAGAGCCCACTAGGGCATAAACAACGTGAGGAGCCCAACCACGGTCGCCCCAATATATACCGACGCCCCCTGTAAACC
ACAGCACCACCGCGTAG-----------CCCGCCACGCCAGCCAGAGCATCCCGCCCG---CTCTCGCCTCGGTGTCGCC
GCCGCCCATGGCCGTCGCCAAGAGCAAGGCAGGCAAGCACGCCGCCCCGCTGCTCGGCAAGTACGAGCTCGGCCGCCTCC
TCGGCCGCGGCACCTTCGCCAAGGTCTACCACGCGCGCTCCCTCGTCGGCGGCGAGGCCGTGGCCATCAAGGTGCTCGAC
AAGCCCGAGCTGGCCGCCACGGCCGGCATGGACGCGCGCGTGCTCGGCGAGGTCTCCGCCATGCGCCGCCTCCGCCACCC
CAACGTGCTGCGCCTCCACGAGGTGCTCGCCACGCGCTCCAAGGTCTACCTCGTCATGGAGCTCGCCCCCGGCGGCGACC
TGCTCTCCAGGCTCGCCTCGCTCCCGTCGCGCCGCCTCCCCGAGCACGCCGCGCGCCGCGTCTTCCTCCAGCTCGTCTCC
GCGCTCATCTACTGCCACGCGCGCGGCGTCTCCCATCGCGACGTCAAGCCGCAGAACGTCCTCATCGACGCCGACGGCAA
CCTCAAGGTCTGCGACTTCGGCCTCGCCGCGCTCCCGGAGTCCCACCGCGACGACGGCCGCCTGCACACCGCCTGCGGCA
CGCCCGCCTTCGCCGCGCCCGAGGTGCTCCGCCGCAAGGCCTACGACGGCGTCAAGGCCGACGCATGGTCCTGCGGCGTC
ATCCTCTACGTCCTCCTCGCCGGCCGCCTGC----CGTTCGACGACTCCAACATCGCCGAGATGTGCAGGAAGGCGCACC
GCCGCGAGTACACGCTCCCGGAGT-GGGTGTCCCAGCCGGCGCGACGCCTCGTGAGCCGCCTGCTCGACCCAAACCCAGC
CACCCGCCTCACGGTCGCCGAGCTCT---CCAGCCACCCGTGGT---TCAAACGGTCGCTCAGCCTGGACTCGCAGCTCG
GCAGCCTCCTCGGCGGCGCGCCGGAGCGCGACCTCTTGTTCCAGGCCCCGCCGACGCTCAACGCGTTCGACATCATAAGC
ATGTCGCCGGGGCTCGACCTGTCGGGACTCTTCGGCGAGAACCGGCGGAGCCGGGAGAAGCGGTTCATGACGACGGCGTC
GCCGGAGCAGATGGTCGAGCAGCTCGGGCACTCGGGCGCAAAGCTCGGTTACTTCATGGTGGGCAAGAAAGGAGTAGAGC
GGCTGCCACTGGGCGGCCTGTCGGGGCTCGTGGCCATGTCCATGGAGATGTCGGAGGTGGCGCCGCCCCTGATGCTCGTC
GAGCTTCGGCTGGAGGCAGGCGACGAGGAG---GAGGTCCAGGCGTTCGGATGGGACGCGCTTAGGACGGAGCTTGGGGA
GGTGGTCATGGCGTGGCATGGATGCGAGGAATTGTGAGGAGGAGTTGGGGGATGTACATGTATGATCTGATGCCAGAAAG
AGCTAACTAGGACTTTGTGGCAGATTGAAGGGGGTAGATTTGTTATTAGTTCATTCACTCTGA-TTTTGATGCTTGTGAT
TAGAAATTTTGTGGGAATGAATCTAGATTCTGTGTCTTTGTGGTGCTAGCCTGAAGGTCTGAATCTGATGATAATAACGT
TGCCCTTATAATTGTGTTGATCTTTTGACTATA--------ACCATACACTGATAGTACACTGCATGCACCAAGTTGG--
---AACCAAAATTAACACAATGACATAA-TTTTTGTCCTTGGTTGTTAGTCCATTCAATCAAAGTGATGTCTGTC-TTTG
CAAGGAGATGCTAGGTTGTTAGTTGAACCATGATTTGTGATGCTTGCTTCAACTTGAAGGCTTGAATCTAATGGTACTAC
TATATGGTAGCCTTAGGCCATAGGCGACATGATTCAGGTTGGAACATTGTCTGAGCTCTGTGGAAGGTAGCCTACTTGTT
TCTTGTCCT-TTAAAAACTCCACATGCATAATGCAAACCTGAGGGCTTTCCAAAGACAATTAGTGGTAATAATAAATTAG
TGCCATGACAGCCACTACAAGGTGCTTCCTGCGAGCACAGTAAACTCTTCTTCCCTGGCAGGTACTCTGCT---------
-------------------------------CTGCTGAACGTCTGAACCAGAAGAAAACTGCAGCTCTGCTGCCTGCAAC
TGTCCCACGAGGCCACGAGTATGCATGTG-TA---GCTGCTTACGCATTAACGACTACTGTAATTACTGTCAGGATTTGG
AAATTGAAAAGGACCAAGGAACGAATTTCCTGTCTTAACTCGCAACAATATCTCAGCGCGTTCTTGTTTGTTGTGCTGGT
CGTTTTCCATGTCAGTTCATTCATGTC--------------TGTCCTTCAGTGGTGGCCTGATGATTGCCCAGATATGGA
AGAGTCATCCGCGTCCGTCCGTTTGAAGCGCCAATGAATATGCCTTGCTGAGGAATATGCCCGTAATCGCTTTTCATGAC
GCACAAAAGTTGGCAGGACGATTGGAACCTATCGACGAGTAAGCATCTCGGTAAAAGTAGACTAGTGCA-----------
------------------AGTCGTGGTCAAACAGAAGCAATCGATTCCAATAACTGGCTCGTATACGCTATGGAAATGCC
TGAATATCAGAACTGGAA
>chr5D_58
---------------------------------------------------------AGCACAGCAAAGCCCAGCTTCGC
GGTGCATGGG-GATGATTCCCTCCTACGCTCTGGGACCCAGCCCCACCAGCTATAGCTGCTGCTGCCTTTCTCTTGGCCC
CCGCCCCCCGGCAATAGCAAGGGCCGACATGCCGATATACGTGCAAATTGAATGACACCAGCAGGGACGGGAGCACCT-C
C-CCTCCCCACAAACCAACAAATTTTTGCATCGGCCGGTAGCCTTTACAGTGAGTAGATCTTTTT---------------
--AGCAACACTCCATTTCCAAAAGAAAATAAA--TGTCAGTTACTTGCTTTTTTTTTTTCTAAATAAAGCTGTTTTTATC
GGACGTCTTTTTAGAAGAATTAGCGGAGGTTACTTAAATTATTTGTCAGACGTGCGCCTTTATTTATGTCCGTAGACAAG
ACACAAACCGATGATTCTGCGTTTAATTCCAGAGCAAGATTTACTATAGTATGTTTACAAAAATCAAAATAC-TAGAAAG
AAAG---TACAAAATGA--AAATCTGCACTTGATGAGGGAAAAGACAACTTGGTGGAGATATTTTTTTAAACGATTTTGG
C--ATGTACTATTATATTTTACACTTGATA-TTTATAAAGGATTTTTATCACACGTAGATGTA----ATATCCATGTGAA
AGCACAGTGACAGCTCAGTCCTCGCCGTGACATGCGAAGTTCAGCTTCAGCCGGACCATATCTTCCTGCCAATGAAGAAG
ATCTACTTTTATTATGCTTAATTTAACAAAACGAATATCATGCAATT---TCTACGCTCCAATTACCATTTGTTTCTCCG
AAGCGAATACTCCACGAGAAGT-------------AACACTCTTCTGCCAGCACTAATACAAAAAGCTTAGAGACAAAAA
CAGAGAGGCCACTGGGGCATAAACAACGTGAGGAGCCCAACCACAGTCGCCCCAATATATACCGACGCCCCCTGTAAACC
ACAGCACCACCGCGTAG-----------CCCGCCAA-----CCAGAGCATCCCGCCCG---CTCTCGCCTCGGTGTCGCC
GCCGCCCATGGCCGTCGCCAAGAGCAAGGCAGGCAAGCACGCCGCCCCGCTGCTCGGCAAGTACGAGCTCGGCCGCCTCC
TCGGCCGCGGCACCTTCGCCAAGGTCTACCACGCGCGCTCCCTCGTCGGCGGCGAGGCCGTGGCCATCAAGGTGCTCGAC
AAGCCGGAGCTGGCCGCCACGGCCGGCATGGACGCGCGCGTGCTCGGCGAGGTCTCCGCCATGCGCCGCCTCCGCCACCC
CAACGTGCTGCGCCTCCACGAGGTGCTCGCCACGCGCTCCAAGGTCTACCTCGTCATGGAGCTCGCCCCCGGCGGCGACC
TGCTCTCCAGGCTCGCCTCGCTCCCCAAGCGCCGCCTCCCCGAGCACGCCGCGCGCCGCGTCTTCCTCCAGCTCGTCTCC
GCGCTCATCTACTGCCACGCGCGCGGCGTCTCCCACCGCGACGTCAAGCCGCAGAACGTCCTCATCGACGCCGACGGCAA
CCTCAAGGTCTGCGACTTCGGCCTCGCCGCGCTCCCGGAGTCCCACCGCGACGACGGACGCCTGCACACCGCCTGTGGGA
CGCCCGCCTTCGCCGCGCCCGAGGTGCTCCGCCGCAAGGCCTACGACGGCGTCAAGGCCGACGCATGGTCCTGCGGCGTC
ATCCTCTACGTCCTCCTCGCCGGCCGCCTGC----CGTTCGACGACTCCAACATCGCCGAGATGTGCAGGAAGGCGCACC
GCCGCGAGTACACGCTCCCGGAGT-GGGTGTCCCAGCCGGCGCGCCGCCTCGTGAGCCGCCTGCTCGACCCCAACCCAGC
CACCCGCCTCACGGTCGCCGAGCTCT---CCAGCCACCCGTGGT---TCAAACGGTCGCTCAGCCTCGACTCGCAGCTCG
GCAGCCTCCTCGGCGGCGCGCCGGAGCGCGACCTCCTGTTCCAGGCCCCGCCGACGCTCAACGCGTTCGACATCATAAGC
ATGTCGCCGGGGCTCGACCTGTCGGGACTCTTCGGCGAGAACCGGCGGAGCCGGGAGAAGCGGTTCATGACGACGGCGAC
GCCGGAGCAGATGGTCGAGCAGCTCGGGCACTCGGGTGCAAAGCTCGGTTACTTCATGGTGGGCAAGAAAGGAGTAGAGC
GGCTGCCACTAGGCGGCCTGTCGGGGCTCGTGGCCATGTCCATGGAGATGTCGGAGGTGGCGCCGCCCCTGATGCTCGTC
GAGCTTCGGCTGGAAGCAGGCGACGACGAG---GAGGTCCAGGCGTTCGGATGGGACGAGCTCAGGACGGAGCTTGGGGA
GGTGGTCATGGCGTGGCATGGCTGCGAGGAATTGTGAGGAGGAGTTGGGGGATGTACATGTATGATCTGATGCCAGAAAG
AGCTAACTAGGACTTTGTGGCAGATTGAAGGGGGTAGATTTGTTATTAGTTCATTCACTCTGATT-TTGATGCTTGTGAT
TAGAAATTTTGTGCGAATGAATCTAGATTCTGTGTCTTTGTGGTGCTAGCCTGAAGGTCTGAATCTAATGATAATAACCT
TGCCTGGTAATTGTGT------------------------------------------CACTGCATGTACCAAATTGG--
---AACCTAAATTAACACAATGACATAA-TTTTTGTCCTTGGTTGTTAGTCCATTCAATCAAAGTGATGTTTG-C-TTTG
CAAGGAGATGCTAGGTTGTTAGTTGAACCATGATTTGTGATGCTTACTTCAACTTGAAGGCTTGAATCTAATGGT---AC
TACATGGTAGCCTTAGCCCATAGGCGACATGATTCAGGTTGCAACATTGTCTGAACTCTCTGGAAGGTAGCCTACTTCTT
-----TCCT-TTAAAAACTCCACATGCATAATGCAGACCTGAGGGCTTTCCAAAGACAATTAGTGCC---AATAAATTAG
TGCCAGGACAGCTGCTACAAGGTGTTTCATTCGAGCACAATAAACTCTTCTTCCCTGGCAGGTACTCTACT---------
-------------------------------CCGCTGAACGTCTGAACCATAAGAAAACTGCAGCTCTGCTGCCTGCAAC
TGTCCCT-------ACGAATTATGCACACATA---GCTGCTTACCCATTAATGACTACTGTAATTGTTTTCAGGATTTGG
AAATTGAAAAGGACCAAGGAACGAATTCCCTGTCTTACCTCGCAACAATATCTCAGCGCGTTCTTGTTTGTTGTGCTGGT
CGTTTTCCATG--------------TC--------------TGTCCTTCAGTGGTGGCCTGATGATTGCCCAGATATGGA
AGAGTCATCTGCGTCCGTCCGTTTGAAGCGCCAATGAATTTGCCTTGCTGAAGAATATG-CCGTGATCGCTTTTCATGCC
GCAC-AAGGTTGGCAGGATGATTGGAACCTGTCGACGAGTAAGCATCTCGGTAAAAGCAGTTTATTTTTTTGAGCAAAAT
CTCGGTAAAAGCAGTGGGAGTCGTGGTCAAACAGAAGCAATCGATTCCAATAACTGGCTCGTATACGCTATGGAAATGCC
TGAATATCAGAACTGGAA
>chr3B_107
--------------------------------------------------------------------------------
--------------------------CGCTCTGGGACCCAGCCCCACCACCA------GCCG------TTCTCTCTTGG-
----CCCCCGGCAATAGCAAGGGCCGACATGCCGATATACGTGCAAATTAAATGACACCAGCAGGGGCGGGAGCACCTCC
C-CCTCCCCACAAACCAACAAATTCGTGCATAGCCCGGTAGCTTCTACAGTGAGTAGATCTTTTCACGAGTTATCACTAC
ACAGCAACACTCCATTTTCAAAAG-----AAA--TGTCAGTTACTTGCTTTTTTTC-----AAATAAAGCTATTTTCACT
GGACGTCTTTTTAGAAGAATTATTGGACGTTAATTAGACAGTTTGTCC--------------TTTATTTATGTACTTG-C
ATACAAACCGACGATTCTGCGTTTAGTTCGAGTGTAAGG-----TCTGGCATGTTTGCATAAATGAAATGAAATAGAAAG
AAAAGAGTACTACAAGATGAAATCTACACTTGATGAGGTAAAAGACAACTTGGCGCAGATATTTTTTTAACGGATTTTGG
CATATATATTAGTATATTTTACACTTGATA-TTTATAAAGGATTTTTATCACACGTAGATCTAATATATATCCTTGTGAA
AGCACAGTGACAGCTCAGTCCTCACCGTGACCTGTGAAGTCCAGCTTCAGCCGGACCATATCTTCCTGCCAATGAAGAAG
ATCTAGTTTTATTATGCTTAAT-----AAAATGAATATCATGTAGTAATA-------TCCAATTACTATTTGTTTCTCCG
AGGCGAATG---CACGAGAAGTA------------AACACTCTTCTGCCAGCACTAATACAAAAAGCTAGAGACAAAAAA
CAGAGAGGCCAC--------------------------------------------------------------------
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>chr5A_792
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-----------------TTACT-----AAAACGAATATTACGCAATT---TCTACGCTCCAATTACCATTTGTTTCTCCA
AAGCGAATAGCACAAGAGAAGTGCCAACCATCAGCAGCACTGTTCTTGTGCCACTAATACAAG-AGCTTAGAGACAAAAG
CAGAGAGGCCACTAGGGCATAAACAACGTGCCAAACCCAACCACAGTCGCCCC-ATATATACCCACGCCCCCTGTAAACC
ACAGCACCACCGCCTTGCCCTGCCCTACCCTGCCGA-----CCAGAGCATCCCCGGGCCTCCTCCCGCCTCGGTGCCGCC
GCCGCCCATGGCCGTCGCCAAGAGCAAGGCGGGCAAGCACGCCGCCCCGCTGCTCGGCAAGTACGAGCTCGGCCGCCTCC
TCGGCCGCGGCACCTTCGCCAAGGTCTACCACGCGCGCTCCCTCGTCGGCGGCGAGGCCGTGGCCATCAAGGTGCTCGAC
AAGCCCGAGCTGGCCGCCACGGCCGGCATGGACGCGCGCGTGCTCGGCGAGGTCTCCGCCATGCGCCGCCTCCGCCACCC
CAACGTGCTGCGCCTCCACGAGGTGCTCGCCACGCGCTCCAAGGTCTACCTCGTCATGGAGCTCGCCCCCGGCGGCGACC
TGCTCTCCAGGCTCGCCGCGCTCCCCAAGCGCCGCCTCCCCGAGCACGCCGCGCGCCGGGTCTTCCTCCAGCTCGTCTCC
GCGCTCATCTACTGCCACGCGCGCGGCGTCTCCCACCGCGACGTCAAGCCGCAGAACGTCCTCATCGACGCCGACGGCAA
CCTCAAGGTCTGCGACTTCGGCCTCGCCGCGCTCCCGGAGTCCCACCGCGACGACGGACGCCTGCACACCGCCTGCGGCA
CGCCCGCCTTCGCCGCGCCCGAGGTGCTCCGCCGCAAGGCCTACGACGGCGTCAAGGCCGACGCATGGTCCTGCGGCGTC
ATCCTCTACGTCCTCCTCGCCGGCCGCCTGC----CGTTCGACGACTCCAACATCGCCGAGATGTGCATGAAGGCGCACC
GCCGCGAGTACACGCTCCCGGAGT-GGGTGTCCCAGCCGGCGCGTCGCCTCGTGAGCCGCCTGCTCGACCCCAACCCAGC
CACCCGCCTCACGGTCGCCGAGCTCT---CCAGCCACCCGTGGT---TCAAACGGTCGCTCAGCCTCGACTCGCAGCTCG
GCAGCCTCCTCGGCGGCGCGGCGGAGCGCGACCTCCTGTTCCAGGCCCCGCCAACACTCAACGCGTTCGACATCATAAGC
ATGTCGCCGGGGCTCGACCTGTCGGGACTCTTCGGGGAGAACCGGCGGAGCCGGGAGAAGCGGTTCATGACGACGGCGTC
GCCGGAGCAGATGGTCGAGCAGCTCGGGCACTCGGGCGCAAAGCTCGGTTACTTCATGGTGGGCAAGAAAGGAGTAGAGC
GCCTTCCACTAGGCGGCCTGTCAGGGCTCGTGGCCATGTCCATGGAGATGTCGGAGGTGGCACCACCCCTGATGCTCGTC
GAGCTTCGGCTGGAGGCAGGCGACGACGAG---GAGGTCCAGGCGTTCGGATGGGACGAGCTTAGGACGGAGCTTGGGGA
GGTGGTCATGGCGTGGCATGGATGCGAGGAATTGTGAGGAGGGGTTGGGGGATGTACATGTATGATCTGATGCCAGAAAG
AGCTAACTAGGACTTTGTGGCAGATTGAAGGGGGTAGATTTGTTATTAGTTCATTCACTCTGA-T-TTGATGCTTGTGAT
TAGAAATTTTGTGGGAATGAATCTAG---CTGTGTCTTTGTGGTGCTAGCCTGAAGGTCTGAATCTGATGATAATAACCA
TG-CCTTATAATTGGGTTGATCTTTTGACTATATGAACACAACCATACACTG---GTACACTGCATGCACCAAATTAAGG
AACAACCTAAATTAACACAATGGCATAATTTTTTGTCCTTGGTTGTTAGTCCATTCAATCAAAGTGATGCTTG-CCTTTG
CAAGGAGATGCTAGGTTGTTAGTCGAGCCATGATTTGTGATGCTTACTTCAACTTGAAGGCTTGAATCTAATGGT---AC
TATATGGTAGCCTTAGGCCTTAGGCGACATGATTCAGGTTGGAACATTGTCTGAACTCTCTGGAAGGTAGCCTGCTTCTT
-----TTCCATTAAAAACTCCACATGCATAATGCAAATCTGAGGGCTTTCCAAAGACAATTAGTGCT---GATAAATTAG
TGTCATGACAGCTACTCCAAGGTGTTTCCTGCCAGCACAATAAGGGCCACTAACTCTTCATAAATTTTTGGCGGAGATTA
TAACAGTCTAATGCACCACGCGGCTGGTATGCTACTGAACGCCTGAACCAGAAGAAAACTGCAGCTCAGCTGCCTGCAAC
TGTCCCT-------ACGATTATGCATATG-TAGGTGCTGCTTACCCATTAATGACTACTGTAATTACTGTCAGGATTTGG
AAACTGAAAAGGACCAAGGAACGAATTCCCTGTCTTAACTCGCAACAATATCTCAGCGCGTTCTTGTTTGTTGTGCTGGT
CGTTTTCCATG--------------TCAGTTCCTTCATGTCTGTCCTTCAGTGGTGGCCTGATGATTGCCCATATATGGA
AGAGTCATCTGCGTCCGTCCGTTTGAAGCGCCAATGAATTTGCCTTGCTCAAGAATATG-CCGTAGTCGCTTTTCACGAC
GCACAAAGGTTGGCAGGATGATTGGAACCTGTCGACGAGTAAGCATCTCGGTAAAAGTAGTGGGG---------------
-------------------GTGGTGGTCAAACAGAAGCAATCGGTTCCAATCACTGGCTCGTATACGCTATGGAAATGTC
TGAATATCAGAACTGGAA
>chr5D_1074
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---------------CGGCAAGAGCAAGAAGAGCAAGGACACG---CCACTGCTGGGCAAGTACGAGCTCGGGCGACTGC
TCGGCCGCGGCACGTTCGCCAAGGTCTACCTCGCGCATCCGGTCACTGGCGGTGAGCCAGTGGCAGTGAAGGTGATCGAC
AAGGCGGAGGTGATGGGCATGGAGGGCATGGCGCCTCGCGTGCTCCGGGAGGTGGTGGCCATGCGCCGGCTTCGCCACCC
GGGCGTGCTCCGCCTCCACGAGGTGCTCGCCACCCGCTCCAGAATCTACCTCGTCATGGAGCTAGCCCCCCGTGGCGACC
TCCAGTCCATGCTCGCCGCTCTGCCAAACCGCCGCTTTTCGGAGAAGGCCGCGCGGCGCGTGTTCGTGCAGCTCACGGCG
GCGCTCGCCCACTGCCACGCGCGCGGCGTGACGCACCGCGACGTCAAGCCGCAGAACGTCCTCCTCGACAGCGCCGGCAA
CCTTAAGGTGTCCGACTTCGGCCTATCGGCGCTCCCAGACACGCTTCGGGACGACGGCCGCCTCCACACCGCCTGCGGCA
CGCCGGCCTATGCCGCGCCGGAGGTGCTCCGCCACATATCATACGACGGCGCCAAGGCCGACGCGTGGTCCTGCGGCGTC
ATGCTCTTCGTCCTCCTCGCCGGACGCCTGC----CCTTCGACGACGCGAACATCCCCGATATGTGCCGGAAGGCGCACC
GCCGTGAGTACGAGGTACCGCCGTGGG-TGTCGCCGCCGGCGCGCCGCCTGGTGCACCGCCTGCTCGACCCGAACCCGGC
GACCCGCGTCTCCGTGGAGGCTCTGGCGGCGACGCACCCATGGTTCGTCAAGCGCTCCCTCAGCCTCGACTCGCAGCTCG
ACGGCCTCCTCGACGGCCAGCCAGAGCGCGCGCTGGCGTTCCGGG---CGCCGGCGGTGAACGCATTCGACATCATATCC
ATGTCGCAAGGGCTCGACCTGTCCGGGCTGTTCGGCGGGAGCAA---GAGCAGGGAGAAGCGGTTCATGACGACGGCGTC
GCCGGAGCAGACGCTGGAGCAGCTCAGCCGGGCGAGCGGGAAGCTCGGGTACGTCGTGGTGGGGACGAAAGGAGTGGGGT
GCCAGCGCCGTCCTCCAG---CAGGGAGGCCGGCAATATCAGTGGGGATTTCGGAGCTGGTGCCGCCACTAATGCTCGTC
GAGATGCGGCTGGAGATGGACGACGGCGACGGCGAGGTTCAAGTGTTTGGTTGGGATCAGTTGAGGGTGGAGCTAGGGGA
TGTAGTAAGGGCTTGGCAT-------------------------------------------------------------
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>chr1A_1090
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-------------------------------GGCAAGCGCGGCGGCCTCCTGCTCGGCCGCTACGAGCTGGGCCGCGTCC
TCGGCCACGGCACCTTCGCCAAGGTCTACCACGCGCGCCACGCCGACACGGGCGAGACGGTCGCCATCAAGGTGCTGGAC
AAGGAGAAGGCGCTGCGT---GCCGGCCTCGTCCCGCACATCAAGCGCGAGATCACCATCCTCCGCCGCGTCCGCCACCC
CAACATCGTGCGCCTCTTCGAGGTCATGGCCACCAAGTCCAAGATCTACTTCGTCATGGAGTTCGTCCGCGGCGGCGAGC
TCTTCGCGCGCG---------TCGCCAAGGGCCGCCTCAAGGAGGACACGGCCCGCCGCTACTTCCAGCAGCTCATCTCC
GCCGTCGGCTTCTGCCACGCGCGCGGCGTCTTCCACCGCGACCTCAAGCCCGAGAACCTCCTCGTCGACGAGCGCGGGGA
CCTCAAGGTCTCCGACTTCGGCCTCTCCGCCGTCGCCGACCAGTTCCACCCCGACGGCCTCCTCCACACCTTCTGCGGCA
CCCCCTCCTACGTCGCGCCCGAGATGCTCGCGCGCCGCGGATACGACGGCGCCAAGGCCGACATATGGTCCTGCGGGGTC
ATCCTCTTCGTCCTCATGGCCGGC--------------------------------------------------------
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>chr1D_1108
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-------------------------------------------------CTGCTCGGCCGCTACGAGCTGGGCCGCGTCC
TCGGCCACAGCACCTTCGCCAAGGTCTACCACGCGCGCCACGCCGACACGGGCGAGACGGTGGCCATCAAGGTGCTGGAC
AAGGAGAAGGCGCTGCGT---GCCGGGCTCGTCCCGCACATCAAGCGCGAGATCACCATCCTCCGCCGCGTCCGCCACCC
CAACATCGTGCGCCTCTTCGAGGTCATGGCCACCAAGTCCAAGATCTACTTCGTGATGGAGTTCGTCCGCGGCGGCGAGC
TCTTCGCGCGCG---------TCGCCAAGGGCCGCCTCAAGGAGGACACGGCGCGCCGCTACTTCCAGCAGCTCATCTCC
GCCGTCGGCTTCTGCCACGCGCGCGGCGTCTTCCACCGCGACCTCAAGCCCGAGAACCTCCTCGTCGACGAGCGCGGGGA
CCTCAAGGTCTCCGACTTCGGCCTCTCCGCCGTCGCCGACCAGTTCCACCCCGACGGCCTCCTCCACACCTTCTGCGGCA
CCCCCTCCTACGTCGCGCCGGAGATGCTCGCGCGCCGCGGATACGACGGCGCCAAGGCCGACATATGGTCCTGCGGCGTC
ATCCTCTTCGTCCTCATGGCCGGC--------------------------------------------------------
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>chr5B_1109
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--------------------------------------------------TGCTGGGCAAGTACGAGCTCGGGCGACTGC
TCGGCCGCGGCACGTTCGCCAAGGTGTACTTCGCGCACCCGGTCACTGGCGGTGAGCCAGTGGCAGTGAAGGTGATCGAC
AAGGCGGAGGTGATGGGCATGGAGGGCATGGCGCCTCGCGTGCTCCGGGAGGTGGTGGCCATGCGCCGGCTTCGCCACCC
GGGCGTGCTCCGCCTCCACGAGGTGCTCGCCACGCGCTCCAGGATCTATCTCGTCATGGAGCTAGCCCCCCGTGGCGACC
TCCAGTCCATGCTCGCCGCTCTACCAAACCGCCGCTTTTCGGAGAAGGCCGCGCGGCGCGTGTTCGTCCAGCTCACGGCG
GCGCTTGCCCACTGCCACGCGCGCGGTGTGACGCACCGCGACGTCAAGCCGCAAAACGTCCTCCTCGACAGCGCCGGCAA
CCTTAAGGTGTCCGACTTCGGCCTATCGGCGCTCCCAGACACGCTTCGGGACGACGGCCGCCTCCACACCGCCTGCGGCA
CGCCGGCCTATGCCGCGCCGGAGGTGCTCCGCCACACATCATACGACGGCGCCAAGGCCGACGCGTGGTCCTGTGGCGTC
ATGCTCTTCGTCCTCCTCGCCGGACGCCTGC----CCTTCGACGACGCGAACATCCCCGATATGTGCCGAAAGGCGCACC
GCCGTGACTACGAGGTCCCGCCGTGGG-TATCCCCGCCGGCGCGCCGCCTGGTGCACCGCCTGCTCGACCCGAACCCGGC
GACCCGCGTCTCCGTGGAGGCTCTGGCGGCGACGCACCCATGGTTCGTCAAGCGCTCCCTCAGCCTCGACTCGCAGCTCG
ACGGCCTCCTCGACGGCCAGCCAGAGCGCGCGCTGGCGTTCCGGG---CGCCGGCGGTGAACGCATTCGACATCATATCC
ATGTCGCAAGGGCTCGACCTGTCCGGGCTGTTCGGCGGGAGCAA---GAGCAGGGAGAAGCGGTTCATGACGACAGCGTC
GCCGGAGCAGACGCTGGAGCAGCTCAGCCGGGCGAGCGGGAAGCTCGGGTACGTCGTGGTGGGGAAGAAAGGAGTGGGGT
GCCAGCGCCGTCCTCC------AGGGAGGCCGGCAATATCAGTGGGGATTTCGGAGCTGGTGCCGCCACTAATGCTCGTC
GAGATGCGGCTGGAGATGGACGACGGCGACGGCGAGGTTCAAGTGTTTGGTTGGGATCAGTTGAGGGTGGAGCTAGGGGA
TGTAGTAAGGGCTTGGCATAGCTGTGAAGATTTG----------------------------------------------
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>chr2B_1405
TCCCGCCAGC----------------------------------------------------------------------
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----------------------------------CCTCCCCGAGCACGCTGCGCGCCGCGTCTTCCTCCAGCTCGTCTCC
GTGATCATCTACCGCCACGTGCGCGGTGTCACCCACCGCGACGTCAAGCAGCGGAACGTCCTCCTCGACGTAGACGGCAA
CCTCAAGGTCTGCGACTTCGGCCTCGCTGCACTACCGGAGTCCCACCGTGACGACGGCCGCCTGCACACCACCTGTGGGA
CGCCCGCCTTCGCCGCCCCCGAGGTGCTCCGCCGCAAGGGCTACGATGGCGTCAAGCCCAACGCCTGCTCCTGCGGCGTC
ATCCTCTACGTCCTACTCGCCGGCCGCCTGC----CGTTCGACGACTCCAACATCACCGAGATGTGCAGGAAGGCGCACC
GCCGCGAGTACACGCTCCCCCAGT-GG-TGTCCCCGCCGACGCACCGCCTCATGAACCGCCTGCTCCACCCCAACCCAGC
CACGCGCCTCACCGTCGCCGAGCTAT---CGAGCCACCCGTGGT---TCAAACGGTCGCTCAGCCTCGACTCGCAG----
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>chr1A_1405
TCCCGCCAGC----------------------------------------------------------------------
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----------------------------------CCTCCCCGAGCACGCCGCGTGCCGTGTCTTCCTCCAGCTCGTCTCT
GCGATCATCTACCGCCACGTGCGCGGTGTCACCCATCGCGACGTCAAGTAGCGGAACGTCCTCCTCGACGCAGACGGCAA
CCTCAAGGTCTGCGACTTCGACCTCGCTGCGCTACCGGAGTCCCACCGCGACGACGGCCGCGTGCACACCACCTGTGGGA
CGCCCGCCTTCGTTGCCCCCGAGGTGCTCCGCCGCAAGGGCTACGATGGCGTCAAGCCCGACGCTTGCTCCTGCGGCGTC
ATCCTCTACGTCCTACTCACCGGCCGCCTGC----CGTTCGACGACTCCAACATCATCGAGATGTGCAGGAAGGCGCACC
GCCGTGAGTACACGCTCCCCCAGT--GGTGTCCCCGCCAACGCGCCGCCTCATGAGCCGCCTGCTCCACCCCAACCCATC
CACGCGCCTCACCGTCGCCGAGCTCT---CGAGCCACCCGTGGT---TCAAACGGTCGCTCAGCCTCGACTCGCAGCTC-
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>chr5A_1413
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----------------------------------CCTCCCTGAGCGCGCCGCGCGCCGCGTCTTCCTCCAGCTCGTCTCC
GCGATCATCTACCGCCACGTGCGCGGTGTCACCCACCGCGACGTCAAGCAGCGGAACGTCCTCCTCAACGCAGACGGCAA
CCTCAAGGTCTGCGACTTCGGCCTCGCTGCGCTACCGGAGTCCCACCGCGACAACGGCCGCCTGCACACCACCTGTGGGA
CGCCCGCCTTCGCCGCCCCCGAGGTGCTCTACCGCAAGGGCTATGATGGCGTCAAGCCCGACGCCTGCTCCTGCGGCGTC
ATCCTATACGTCCTACTCGCCGGCCGCCTGCCTGCCGTTCGACGACTCCAACATCATCAAGATGTGCAGGAAGGCGCACC
GCCGCGAGTACACGCTCCCGGAGT-GG-TGTCCCCGCCGACGCTCCGCCTCGTGAGCCGCCTGCTCCACCCCAACCCAGC
CACGCGCCTCACCGTCGCCGAGCTCT---CGAGCCACCCGTGGT---TCAAACGGTCGCTCAGCCTCGACTCGCAGCTC-
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>chr1B_1413
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----------------------------------CCTCCCCGAGCACGCCGCGCGCCGCGTCTTCCTCCAGCTCGTCTCC
GTGATCATCTACTGCCACGTGCGCGGTGTCACCCACCACGGCGTCAAGCAGCGGGACGTCCTCCTCGACGTAGACGGCAA
CCTCAAGGTTTGCGACTTCGGCCTCGCTGCGCTACCGGAGTCCCACCGCGACGACGGCCGCCTGCACACCACCTGTGGGA
CGCCCGCCTTCGCCGCCCCCGAGGTGCTCCGCCGCAAGGGCTACGATGGCGTCAAGCCCGACGCCTGCTCCTGCGGCGTC
ATCCTCTACGTCCTACTCGCCGGCCGCCTGC----CGTTCGACGACTCCAACATCATCAAGATGTGCAGGAAGGCGCACC
GCCACGAGTACACGCTCCCCCAGT-GG-TGTCCCCGCCGACGCGCCGCCTCATGAGCCGCCTGCTCCACCCCAACCCAGC
CACGCGCCTCACCGTCGCCGAGCTCT---CGAGCCACCCG-----------ACGGTCGCTCAGCCTCGACTCGCAGCTC-
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>SNPs
SSS--S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S--------------------
---S------S--------------------S-----------------------------S------------------
---------------------------------------------------S--------------------S-------
-S----------------------------------------------------SSSS---------S-S--S-------
---------------------------SS---SS----------------------S-----------------------
-S--S--------------------S-----------------------S------------------------------
-----------------------------------------------------------S--------------------
---------S----------------S------------------------------------------S----------
------------------------------S-------------------------------------------S-----
------S-----------------------------------------S---------------S---------------
--------------------------------------------------------S-----------------------
----------------------------------------------------------------SS--------------
-------S------------------------------------S-----------------------------------
-----------------------------------SSSSSS---------------------------------------
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-------------------------SSS----------------------------------------------------
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--------------------------------------------S--------------------------S--------
------------------------------------------------------------------S-------------
-----------------------------------S--------------------------------------------
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----------S---------------------------------------------------------------------
--------------------------S-------------------------------S---------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------S--------------
------------------------------------------------------------------------------S-
--------------S-------------------------------------SSS------------------S------
-------S--------------------------------------------------------------S--S------
---------------------------------------------S-----------------------------SSS--
------------------------------------------------------S----S-----------------S--
SSSSS------------------------------------------------------------S-SSS----------
------------S-----------S--------------S----------------------------S-----------
--------------------------------------------------------------------------------
------SSSSSSSS----S-------S-----------------S------S----------------------------
---------------------------S----------------------------------------------------
-----------SSSSSSSSSSSSSS-------------------------------------------------------
---------S-----------------------------S-----------S-------S--------------------
-------S----------S-----------S-----------------------------SS----SSS-----------
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>forward_785
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---------------------------------------------TTCGGCCGGACCATATCTTG---------------
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>reverse_2695
--------------------------------------------------------------------------------
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------------------------------------------------------AGTACACTGCATGCACCAAGT-----
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------------------
