>input_sequence_49406
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-----------------------------------------------ATGTCATATGCACAAGCTTTACCATCGAAAAAT
GATGATGACACAAAATATTATGTGAGTTATATACTTTGCTCCTCTTTACTAAAAATATTTTTTTGATAATATTCAATTAT
TTGTGATTCTAACCAAACTATTGATTTATATTTTGTTTCTCTAGATTTTTGAAGTGTATGAATAACCTCCACCTTTAAAT
TGACTCATTTAATTTCGCAGTTTGCCGTACATTTGATGGAAGATAATGATAATGGATACTATGGAATATCTGCTAACATG
GATGTGTATGGACACAATCTTAATGTCGGACAACTGTCAGCGGGTGCAATTTGTATTCATAACTGGGAAGGTGATGTTAA
CAAAAAACTCAATTCAATTATTGTTGGTTGGGTGGTAAGTCATCTTTTTT-AGTCTTTGAATTTCCATAATTTTTTAAAC
GGTGTTGATGTGTTTTAGTTTTGTATTTCTTATAATTAACATATGTTTCC-AATACTTATATAGGTTTGGCCATATCGAT
TTAATGACTCGCGTACTCACCTTTTTACGGTTTGGACAGTATGTTTCTTCCTCTTATTTAAACTTGTGATATAGATGGTC
CACAAAAAGTGTGTGAAATTTTATTATTTTACTAAGATTTATATTTTGA--A-G-TAACATGATTTTAGAGAACTCTAAG
ATAAACTAAGTTGATAGAATGATTGGATAAACTACTTCTCTAGGTGTTCTCAAACAAGCAAAATAATTAGGAGTTGGTTT
TGCGTAAATGCTTGACAATGGTAATGAAATAATAAGGGGAAAATCAAAGATAGAGGTAGAATTGTCTATACATAGAAGAA
TTAT---AATTTTAAGC-GATATTCCAAAATAAGAGTAGTTTATAAAAATGAGCGG-------TTAGACAATATGGGATG
ACATCTAAATGATATGTTTGGAAGTGCAGAAAGATAATCATCAAAGTACAGGGTGTGTCAACCTCGATTGTCCTGGCTTT
AAACTCGTGAAGGGGTCCCCCATATCTCCCGGTGGTATCATAAGCCCTGTCTCCGGTATCAATAGGAAACGCCAAACGAT
TACTATTAGAGTGTCCAAGGTACGTCTGCTCAATTTTTGTTCATTAGGGACGCAGAAGTGC-------------------
TCATTTAATTATTGTCCTATATGTTTGCATGAATAAAATTGTAGGAAAGTTCAAGTGGGGACTGGTGGTTGTATTATGGC
ATCAACGGTGTCCCAATTCCAGTAGGTTACTTCCCAGCATCACTATTTGATAGCTTATCTACAAAATCCACTCAAATCTC
GATTGGAGGCCATGCTCG-----AAGTACTACAAATAATACAACTCCTCCTATGGGAAGTGGAGCCTTTGCCTCTAACCC
TGGTCAAGCTGCATCTATCCATGATATCTGGCTCATCCACAAGGATGGTAGAAGCACCCCAATTGGCAATGATGCACGCA
CTAAAGTTACAGATGGCAAGCTCTACTCTGCCTCACCCATAGGAAGAGCGCAATTCTTTTATGGAGGCCCGGGAGGGAAA
TCTTAG--------------------------------------------------------------------------
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>chr4D_1_TraesCS4D01G255900
TGTAGGGCCAACCTCCTATGGCCTTCTGATGTGTTGAAACTTCCTACACCATTTTTGTTTTGTT-TTCCTTGGACTTTTT
CAAGGGATTTTTCTAAAAAAATAAAGAAACAACAAAAAAACATGAACTAGCATTGGGAACTGGATTAATATGTTAGTGCA
AAAAAATTCAATAAAAAGTATGCACAAAGTGTGTAATTGATAGCAATATATTAGATGTCTTTTGGCTCAGTATGTAGTTG
TTTAATTTTGGATAGGGAAACAAATGTACTTCAATAAGTACACAAATCAAAGTTGCATATCTGGATTGCCATTCCATAAA
TTTCTTCCAAGTAGCACTATCATAGTATCATATTTAATGAGCAGAGATTTGGTCATTTGTTTCTTGATTGTGAGGGGGTT
GTATATCATTTATTGCTAC--TGCAGGCTGTGGTCGCGTGGAAATTAAGAGTAGTCCCTCTATATAAAAGAACTCCCATG
TGAATATTGCTCTATATGTGTTCTCCCTCATCTCAAGATGTCTCATCTTCATCTAGTATTGTAAATATTTGTGTTATGCA
CCATATTTTTTGTGCATCAAGGCCTGGCAGATCAACTTACTCTGAATACCCATGAGGTAAACATAGGTATTCTATTTGAT
AAAAAATTCCACCAAAATATATACTAGAAAGTCCATACATCAATGTACAATGAATCTTCCAGTTGTTTATGTGTTTGGAT
GTGGAAACAGAAGATTCAACATACATGTGGAGTTAATCAACAGAAGAATTCATGCTTTCCTGTAACCATCCATTATTATT
TGTTTATAATTTTCAGATGAGTTGGTTTTCACACCGGCAAATAAGAAGCTACAAATCCATATATGCATACTTACATAATC
CTT-TTTGTCTTGAAGGAAAATATGGATGCATCATCGATGCTCATTAGTATGAAGGAAACCCCAACAAGTTCACAATATA
TGGATTGCAATTTTAGTTCAACAGATATTATATATATGCC---TCAGATGTCATATGCACAAGCTTTACCATCGAAAAAT
GATGATGACACAAAATATTATGTGAGTTATATACTTTGCTCCTCTTTACTAAAAATATTTTTTTGATAATATTCAATTAT
TTGTGATTCTAACCAAACTATTGATTTATATTTTGTTTCTCTAGATTTTTGAAGTGTATGAATAACCTCCACCTTTAAAT
TGACTCATTTAATTTCGCAGTTTGCCGTACATTTGATGGAAGATAATGATAATGGATACTATGGAATATCTGCTAACATG
GATGTGTATGGACACAATCTTAATGTCGGACAACTGTCAGCGGGTGCAATTTGTATTCATAACTGGGAAGGTGATGTTAA
CAAAAAACTCAATTCAATTATTGTTGGTTGGGTGGTAAGTCATCTTTTTT-AGTCTTTGAATTTCCATAATTTTTTAAAC
GGTGTTGATGTGTTTTAGTTTTGTATTTCTTATAATTAACATATGTTTCC-AATACTTATATAGGTTTGGCCATATCGAT
TTAATGACTCGCGTACTCACCTTTTTACGGTTTGGACAGTATGTTTCTTCCTCTTATTTAAACTTGTGATATAGATGGTC
CACAAAAAGTGTGTGAAATTTTATTATTTTACTAAGATTTATATTTTGA--A-G-TAACATGATTTTAGAGAACTCTAAG
ATAAACTAAGTTGATAGAATGATTGGATAAACTACTTCTCTAGGTGTTCTCAAACAAGCAAAATAATTAGGAGTTGGTTT
TGCGTAAATGCTTGACAATGGTAATGAAATAATAAGGGGAAAATCAAAGATAGAGGTAGAATTGTCTATACATAGAAGAA
TTAT---AATTTTAAGC-GATATTCCAAAATAAGAGTAGTTTATAAAAATGAGCGG-------TTAGACAATATGGGATG
ACATCTAAATGATATGTTTGGAAGTGCAGAAAGATAATCATCAAAGTACAGGGTGTGTCAACCTCGATTGTCCTGGCTTT
AAACTCGTGAAGGGGTCCCCCATATCTCCCGGTGGTATCATAAGCCCTGTCTCCGGTATCAATAGGAAACGCCAAACGAT
TACTATTAGAGTGTCCAAGGTACGTCTGCTCAATTTTTGTTCATTAGGGACGCAGAAGTGC-------------------
TCATTTAATTATTGTCCTATATGTTTGCATGAATAAAATTGTAGGAAAGTTCAAGTGGGGACTGGTGGTTGTATTATGGC
ATCAACGGTGTCCCAATTCCAGTAGGTTACTTCCCAGCATCACTATTTGATAGCTTATCTACAAAATCCACTCAAATCTC
GATTGGAGGCCATGCTCG-----AAGTACTACAAATAATACAACTCCTCCTATGGGAAGTGGAGCCTTTGCCTCTAACCC
TGGTCAAGCTGCATCTATCCATGATATCTGGCTCATCCACAAGGATGGTAGAAGCACCCCAATTGGCAATGATGCACGCA
CTAAAGTTACAGATGGCAAGCTCTACTCTGCCTCACCCATAGGAAGAGCGCAATTCTTTTATGGAGGCCCGGGAGGGAAA
TCTTAGTGAGGTGGATCCGAGTGCCTATGTAATGCAATGCATGAATAAAACATTGTAATAAAATATGCTAGTTTATATAG
T-CCC-TGGTTGTGCGGCGATCCTTATTGACCTGATAAAAGTTTGTTGAAATTTGGCAATGCATCACCATATTTAGTATC
GGCCGATTTATTACTCATTATAGATGATCCATACTTGCATATTGTCGGAACATAGTAAACATAGCATTGTGGATGACTAG
TTCTAATACTCCATAGAATTATT--TGGA-TTTCATATACACCGATTTTCACTTGAAAAGTATCTAAGGCTATGCA-CCC
ATTGTGCTTGAATAGACACTTGGAAAGGATAAATATGTGTATGCTCGGTCAGGGATTTGGATGTTATAGAAGATACGTTC
CCTTGTAACTTTGGGATCACCCGGTTGTACCGTCTCGA-GGTTAATGCACCGCTGACCACGAAGGTTACATGGTGGGTTC
ACCAAGGTTCTGGCTCCTGGATGGATAAA-CGCCTTACGTCCTGCCTGCTGACATTAACT-----AATCAATGGTAGGAT
TACAACGGTGTAGATCTTATCTAGAGATATCTAGCTTATGAGTCAAATGCCTTAGAAGTCCAATGATCTTTGACGGAGGT
CTATTTGTCTCTTATATTAGTAGGTGAATGTCGTA----------GTACCTTTGAGGGATATG-----------------
--------------ATATGATCGAGCAATCCTACTGTTATGGGAATGATCTCCCAT--TATAGCTACATACCTGAGTAAG
TGCACCCATCATTACCCCCACTAAGTACCTACTTGGGCGCAATGAGGCACAAGACCCAGAGGTCCCTAGACACTCTTTTG
GGTGACCCAGTCTCAATGCACCATTGAACATACCCTTATCTCACTACTTATACTTACTCATCGACAAACATCACGCTAGT
ACATGAAATGAGTT----AGCGTTGGTACTTCTAAGGGGATGAGTAGGGAGAGTTGCATCCAACTGTTCTCATTCTAAGC
TTTTCCC-TATTTCCAAGAACAAAACG
>chr4A_1
TGTAGGGCCAAGCTCCTATGGCCTTCTGATGTGTTAAAAATTCCAACACCATTTTTGTTTTGTTCTTCCTCAGACTTTTT
CTAGGGATTTTTCTAAAAAA-TAATGAAACAACAAAAAAAGATGAACTAGCATTGGGAACTGGATTAGTATGTTA-TG-A
AAAAAAATCAATAAAAAGTATGCACAAAGTGTGTACTTGATAGCAATATATTAGATGTCTTTTGGCTCAGTACATAGTTG
TTTAATTTTGGATGTGGAAACAAATGTACTTCAATAAATAAACAAATCAAAGTTGCATATCTGGATTGCCATTCCATAAA
TTTCTTCCAAGTAGCACTATCATAGTATCATATTTAATGAGAAGAGATTTGGTCATTTATTTCTTGATTGTGTGGGGGTT
GTATATCATTTATTTCTCTATTGCAGGTTGTAGTCGCGTGGAAATTAAGAGTAGCCCCTCTATATAATAGAACTCCCATG
GGAATATTGCTCTATATGTGTTCTCCCCCATCTCAAGATGTCTCATCTTCATCTAGTTTTGGAAATCTTTGCGTTATGCA
CCATATTTTTTGTGCATCAAGGCCTGGCAGATCAACTTACTCTGAATACCCATGAGGTAAACATAG-TATTCTATTTGAG
AAAGATTTCCACCAAAATATATACAAGAAAGTCCATGCATCA-TGTACAATGAATCTCCCAGTTGTTTATGTGTTTGGAT
GTGGGAATAGAAGATTCAACATACATGTGGAGTCAATCAACAGAAGAATTCCTGCTTTCCTATAACCATCCATTACTATT
TGTGTATCATTTTTAGATGAGTTGATTTTCACACCGGCAAATAAGAAGCTACAAATCCATATATGCATACTTACATGATC
CTT-TTTGTCTTGAAGGAAAATATGAATGCATCATCGATGCTCATTAGTATGAAGGAAAACCCAACAAGTTCACAATATA
TGGATTGCAATTTTAGTTCAACAGATATTATATATATGCC---TCAGATGTCATATGCACAAGATTTACCATC-AAAAAT
GACGATGACACAAAATATTATGTGAGTTATATACTTTTCTCCTCTTTACTAAAAATATCTTTTAGATAATATTGAATTAT
TTGTGATTCTTACCAAACTATTGATTTATAGTTTGTTTATCTAGATTTTTGAAGTGTATGAATAACCTCCATCTTTAAAT
TTACTC-----ATTTTGAAGTTTGCCGTACATTTGACGGATGATAATGACAAGGGATACTATGGAATATCTGCTAACATG
GATGTGTATGGACACAATCTTAATGTCGGACAACTGTCAGCGGGTGCAATTTGGATTCATAACTGGGAAGGTGATGTTAA
CAAAAAACTCAATACAATTATTGTTGGTTGGGTGGTAAGTCATCTTTTTT-AGTCTTTGAATCTCCATATTATTTTAAAC
GATGTTGATATGTTTTAGTTTTGTATTTCTTATAATTGACTTATGTTTCTT-ATACTTATGTAGGTTTGGCCATATCGAT
TTAATGACTCGCGTACTCACCTTTTTACATTTTGGACAGTATGCTTCTTCCTCTTATTTAAACTTGTGATATATATAGTC
CACAAAAAGTGGGTG-AATCTTATTATTTTTCTAAGATTTATATTTTGA--A-GGTAACATGATTTTAGAGAACTTTGAG
ATAAACTAAGTTGATAGAATGATTGGATAAACTACTTCTCTAGGTGTTCTCAAACAAGCAAAATAATTAGGAGTTGGTTT
TGCGTAAATGCTTGACAATGATAATAAAATAATAAGGGGAAACTCAAAGATAGAGGTAGCATTGTCTATACATGGAAGAA
TTAT---AATTTTAAGT-AATATTCCAAAATAAGAGTTATTTTTAAAAATGAGCGACTAGATATTAGACAATATGGGATG
CCATCTAAATGATATGTTTGGAAGTGCAGAAAGATAATCATCGAAGTACAGGGTGTGTCAACCTCGATTGTCCTGGCTTT
AAACTCGTGAAGGGGTCCCCCATATCTCCTGGTGATATCATAAGTCCTGTCTCCGGTATCAATAGGAAATGCCAAACGAT
TACTATTAGAGTGTCCAAGGTACGTTTTATCAATTTTAATTCATTAGGGATGCAGAAGTAC-------------------
TCATTTAATTATTGTCCTATATGTTTGCATGAATAAAATTGTAGGAAAGTTCAAGTGGGGACTGGTGGTTGTACTATGGC
ATCAACGGTGTCCCAATTCCAGTAGGTTACTTCCCAGCATCACTATTTGACAGCTTATCTACAAAAGCCACTCAAATATC
AATTGGAGGGCATGCTCG-----AAGTACTAGAAATACTATAGCTCCTCCTATGGGAAGTGGAGCCTTTTCCTCTAACCC
TGGTTAAGTTGCATCTATCCATGATATTTGGCTCATCCACAAGGATGGTAGAAGCACCCCAATTGGCAATGATGCACGCA
GTAAAGTTACAGATGGCAAGCTCTACTCTGCTTCACCCATAGGAAGAGCTCAATTCTTTTATGGAGGCCTGGGAGGGAAA
TCTTAGTGAGGTGGATCTGAGGACATATGTAATGCAATGCATGAATAAGAGATTGGAAGAAAATATGCTAGTTCATATAG
T-TCCTTGGTTGTGCGGCTATCCTTATTGGTTTGATAAAAGTTCGTTGAAATTTGGAAATGCATCACCATATTTAGTATC
GGCCGATTTATTACTCATTATAGATGATCTAGACTTGCATATTGTCGGAACCTAGTAAAGATAGCATTTTGGATGTCCAT
TCCTAATACTCCATAGAATTATT--TGGA-TTTCATATTCACCGA--TTAACTTTAAAAGTATCTAAGGCTCTGCACCCC
ATTATGCTTGAATAGACACTAGGAAAGGATAAATATGTGTATGCTCGGTCAGGGATTTTGATGTTATAGAAGATACAGTC
CCTTGTAACTTTGGGATCACCTGGTCGTATCGTGTCGA-GATTAATGCACCGCTGACCATGAAGGTGACATGGTGGGTTC
ACCAAGGTTCTGGCTCCCGGATGGAAAAA-CGCCTTATGTCCTGCCTACTGACATTAACT-----AATCAATGGTAGGAT
TACAATGGTGTAGATCTTATCTAGAGAGGTCTAGCTTATGAGTCAAATGCCTTAGAAGTACAATGTTCTTTGATGGAGGT
CTGTCCGTCTCTCATATTAGTAGGTGAATGTCGTA----------CTACCTTCGAGGGATATG-----------------
--------------ATATGATCGAGCAATCCTACCGTTACGGGAATGATCTCCCAT--TATAGCTGCATTCCTGACTAAG
TGCACCCATCATTACCCCCTCTGAGTACCTACTTGGGCGCAATGAGGCGCAAGACACAGAGGTCCCTAGACACTCTTTTG
GGTGACCCAATCTGAATGCACCATTGGACATACCCTTATCTCACTACTTATACTTACTCATCGACAAACATCACGCTAGT
ACATGAAATGAGTTAGCGAGCCTTGGTACTTCTAAGGGGATGAGTAGGGAGAGTTGCATCCAACTATTCTCATTCTAAGA
TTTTTCCCTATTTCCAAGAACAAAA--
>chr4B_1
TGTAGGGCCAATCTCCTATGGCCTTCTGATGTGTTAAAACTTCCAACACCATTTTTGTTTTGTTCTTCCTCAGACTTTTT
CTAGGGATTTTTCTAAAAAAATAAAGAAACAACAAAAAAAGAAGAACTAGCATTGGGAACTGGATTAATATGTTA-TGCA
AAAAAATTCAATAAGAAGTATGCACAAAGTTTGTAATTGATAGCAATATATTAGATGCCTTTTGGCTCAGTACGTAGTTG
TTTAATTTTGGATATGGAAACAAATGTACTTCAATAAGTACACAAATCAAAGTTGCATATCTGGATTGCCATTCCATAAA
TTTCTTCCAAGTAGCACTATCATAGTATCATATTTAATGAGAAGAGATTTGGTCATTTATTTCTTGATCGTGAGGGGGTT
GTATATCATTTATTGCTCTATTGCAGGCTGTGGTCGCGTGGAAATTAGGAGTAGCCCCTCTATATAATAGAACTCCCATG
GGAATATTGCTCTATATGTGTTCTCCTCCATCTCAATATGTCTCATATTCATCTAGTATTGGAAATCTTTGTGTTATGCA
CCATATTTTTTGTGCATCAAGGCCTGGCAGATCAACTTACTCTAAATACCCATGAGGTAAACATAGGTATTCTATTTGAT
AAAAATTTCCACCAAAATATAAACTAGAAAGTCCATACATCA-TGTACAATGAATCTCCCAGTTGTCTATGTGTTTGGAT
GTGGAAATAGAAGATTCAACATACATGTGGAGTCAATCAACAAAATAATTCCTTCTTTCCTATAACCATCCATTATTATT
TGTTTATCATTTTTAGATGAGTTGATTTTCACACCGGCAAATAAGAAGCTACAAATCCATATATGCATACTTACATGATC
CTT-TTTGTCTTGAAGGAAAATATGGATGCATCATCGATGCTCAATAGTATGAAGGAAAACCCAACAAATTCACAATATA
TGGATTGCAATTTTAGTTCAACGGATATTATATATATGCC---TCAGATATCATATGCACAAGCTTTACCATCAAAAAAT
GATGATGACACAAAATATTATGTGAGTTATATACTTTGCTCCTCTTTACTAAAAAATACTTTTAGATAATATTGAATTAT
TTGTGATTCTTACCAAAATATTGATTTATAGTTTGTTTCTCTACATTGTTGAAGTGTATGAATAACCTCCATCTTTAAAT
TTACTC-----ATTTCATAGTTTGCCGTACATTTGACGGATGATAATGACAAGGGATACTATGGAATATCTGCTAACATG
GATGTGTATGGACACAATCTTAATGTCGGGCAACTGTCAGCGGGTGCAATTTGGATTCATAACTGGGAAGGTGATGTTAA
CAAAAAACTCAATACAATTATTGTTGGTTGGGTGGTAAGTCATCTTTTTTTAGTCTTTGAATCTCCATATTTTTTTAAAT
GGTGTTGATGTGTTCTAGTTTTGTATTTCTTATATTTGACTTGTGTTTCC-AATACTTATGTAGGTTTGGCCATATCGGT
TTAATGACTCGCGTACTCCCCTTTTTACGGTTTGGACAGTATGTTTCTTCCTCTTATTTAAACTTGTCATATAGATAGTC
CACAAAAAGTATGTG-AAATTTATTATTTTTCTAAGATTTATAGTTTGA--AGG-TAACATGATTTTAGAGAACTCCGAG
ATAAACTAAGTTGATAGAATGATTGGATAAACTACTTCTCTAGGTGTTCTCAAACAAGCAAAATAATTAGGAGTTGGTTT
TGCGTAAATGCTGGACAATGATAATGAAATAATAAGGGGAAACTCAAAGATAGAGGTAGAATTGTCTATACATGGAAGAA
TTAT---AATTTTAAAT-AATATTCCAAAATAGGAGTTGTTTATAAAAATGAGCGAATAGATATTAGACAATGTGGGATG
ACATCTAAATGATATGTTTGGAAGTGCAGAAAGATAATCATCGAAGTACAGGGTGTGTCAACCTTGATTGTCCTGGCTTT
AAAGTCGTGAAGGGGTCCCCCATATCTCCCGGTGATATCATAAGCCCTATCTCTGGTATCAGTAGGAAACGCCAAACGAT
TACTATTAGAGTGTCCAAGGTATGTTTTCTCAATTTTAATTCATTAGGGATGCAGAAGTAC-------------------
TCATTTAATTATTGTCCTATATGTTTGCATGAATAAAATTGTAGGAAAGTTCAAGTGGGGACTGGTGGTTGTACTATGGC
ATCAACGGTGTCCCAATTCGAGTAGGTTACTTCCCAGCATCACTATTTGATAGCTTATCTACGAAAGCCACTCAAATCTC
AATTGGAGGCCATGCTCG-----AAGTACTAAAAATACTATAGCTCCTCCTATGGGAAGTGGAGCCTTTGCCTCTAACCC
TGGTCAAGCTGCATCTATCCATGATATCTGGCTCATCCACAAGGATCGTAGAAGCACCCCAATTGGCAATGATGCACGCA
CTAAAGTTACAGATGGCAAGCTCTACTCTGCTTCACCCATAGGAAGAGCGCAATTCTTTTATGGAGGACCGGGAGGGAAA
TCTTAGTGAGGTGGATCCGAGGACCTATGTAATGCAATGCATGAATAAAAGATTGTAAGAAAATATGCTAGTTTATATAG
TTCCT-TGGTTGTACGGCGATCGTTATTGGCCTGATAAAAGTTCGTTGAAGTTTGGCAATGCATCACCATATTTAGTCTC
GGCCGATTTATTACTCATTATAGATGGTCCATACTTGCATATTGTTGGAACCTAGTAAAGATAGCATTTTGGATGTCTAG
TCCTAATACTCCATAGAATTATT--TGGA-TTTCATATTCACTGA--TTCACTTGAAAAGTATCTAAGGCTCTGCACCCC
ATTGTGGTTGAATAGACACTCGGAAAGGATAAATATGTGTATGCTCGATCAGGGATTTGGATGCTATAGAAGATACATTC
CCTTGTAACTTTGGTATCACCCGGTCGTATCGTGTCGA-GATTAATGCACCGCTGACCACGAAGGTGACATGGTTGGTTC
ACTAAGGTTCTAGCTCCCGGATGGATAAA-CACCTTACGTCCTGCCTACTGACATTAACT-----AATCAATGGTAGGAC
TACAATGGTGTAGATCTTATCTAGAGAGATCTAGCTTATGAGTCAAATGCCTTAGAAGTCCAATGTTCTTTGACGGAGGT
CTGTATGTCTCTTATATTAGTAGGTGAATGTCGTA----------GTACCTTCGAGGGATATGATATGATTGAGCAATCC
TTCTTTTTTGGAGAATATGATCGAGCAATCCTACCGTTACGCGAATGATCTTCCGTTATATAGCTACATTCCTGACTAAG
TGCACCCATCATTACCCCCTTTGAGTACCTACTTGGGCGCAATGAGGCGCAAGACACAAAGGTCCCTAGACACTCTTTTG
GGTGACCCAGTCTGAATGCACCATTGGACATACCCTTATCTCACTACTTATACTTACTCATCGACAAACATCACACTAGT
ACATGAAATGAGTTAGCGAGCCTTGGTACTTCTAAGGGGATGAATAGGGAGAGTTGCATCCAACTGTTCTCATTCTAAGC
TTTTTCCCTATTTCCAAGAACAAAA--
>chr4D_858
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------------------------------------------------------------ATATGCATGCTTACATAATT
TTTATTTGTCTTGAAGGGAAATATTGATGTTTCATCAGAGCTCATCCATATGGACGAGAACACAACAAGTTTACAATATG
TGGATCGCGATTTTAATTCGACACCTATTACACCAATGCCAATTCAGATGCAATATGTACAAGCTTTACCATCGGAAAAT
GATGGTGACATTAAATATTATGTGAGTTATATTGTTTTCACCTCTTTACTCAACAAAGCTTTTAGTTAATTTTTAACTTC
CATAAAG-CTTACAAAGCTATTTATTTGCAAAATG-TTCGCTATATTTGGGAAATGTATGAATCGGTACCATCTTTGACT
TTACTT-----GTTTTGAAGTTTGCTGCACATTGGACTGAGGATAAAGATAAAGGATACTATGGGTTATCTGCTGTGATG
GATGTCTATGGATTCAATCTTAATCATGGACAAATGACAGGGGGTGCAATTTGGATACAAAACTTG-AAGGCGATTTGGA
CAAAAATCTCAATTCAATTGTCATTGGTTGGGTGGTAAGTCATCTTTTTACTCTCTAGATTTCCT----TTCTTTACATT
GGTGCTAATTTGTGGTACTTTAGTATTTATTAAAATTTACTCATTATTGCTAATAATTATGTAGGTTTGGCCATCTCGGT
TTAAGGACTCACATACTCACTTTTTCACAGTTTGGACAGTAAGTTTATTTCGTTA-----------------ATATAGCC
CTTAAAAAGTGTATTTCCTTTCTTTATTTTTCTAAGATGTATATTTCTACAA-G-GTACCTGATTTTAAGAAACTATATC
ATTAAGAAAGTCCACAAGAGGATTGGCTAAACTACTTCTCTAGGTCTTTTT-AACTAGGAAAATATTTATTGGTTAGTCT
TGTGTAATGCTTGAT-AGAGATAATCAAATAATGAGGGAAAACTTGAAGATGGAGGTA-AACAGTCTATACAAGATAGAA
TCAT---AAAAAATTGGTCATACTGTAAAATAAATATGATTGTGTA----------------AGTAAAAACTATGGCATG
ACATTTAGATGACGTGAATTGAACTGCAGAAAGATAGTCATCGGAGTACAGGGTGTGTCAACCTCGATTGTCCTGGTTTT
CAGCTGGTGAAGGGATCCCCCATATCTCCCGGTGACATCATAACCCTAGTGTCTGGTATTAATGGGAAACGACATAGTAT
CACCATTAAAGTGTAAAAGGTACATGTGCTAAACTTTGACTCGTTAAATATGTGGAAGTGGTCAAATTTTGGTCCAGTTG
TAACATAACAATTGACCTATCCATTTGCATGAATAAAATTGCAGGAAAGTTCAAGAGGGGACTGGTGGTTGTCTTGTGGT
ATTGACAGAAACCCAAGACCCGTAGGTTACTTCCCAGCATCACTATTTGATAGCTTATCCGTGAAAGCAACACAAATAAA
GATTTGAGGCCATGCTCTAATATAAGTACTAAAACTACTATACCTCCTCCAATGGGAAGAGGAACCTTTGCCTCTAACTC
GAATAAAGCTGCGTCTATCCATGATATTTGGCTCATCCACAAGGATGGTATAAGCACCCTAATTAGCAATGATGCGCCCA
CTAAAGTAACAGATGACAAGCTCTACTCTGCCTCACCTATAGGAAGAGCAAAATTCTTTTATGGAGGGCCAGAAGGGAAA
TCCTAGTGAGGTGGATCT------CTATGTAATTCAATACATGAATAAAACATT--AAGAAAATATGATAGTTTTTATAG
TTTCT-TGGTCGTGGGGCGATAAGCATTGACCTAATAAAAGTTTGTTGAAATTGGAAAATGAATCACTATAATTATTATC
AGCCAAATTGTTAGTCATTATAGATGATTCATATTTGCATATTGTA-AAACCTAGTAAAGATGGCACTTTGGATGTCCAA
TTATAATACTC-ATAGAATTATTTGTGGG-TTTCTTATTCACTGT--TTCACCTGAAGAGGGTCTAAGGCTCTACACCCT
GTTGTGCCTGAACAGACACTTAGAAGGGATAAATATGTGTATGCTCGGTCGGGGATTTGGATGTTATGG-AGATACGTTC
CCTTGTAACATCGGGATCACCCAATCATATCGTGTCAATGATTAATGCACCACTGAC-ATGAAGGTGACACAGTGAGTTT
ACCCAGGTCCTGGCTCCCGGATGGAT-AA-CACCTTAAGTCCTGCCTACTGACATTATTAATTAAAAACAGTGGTAGGGT
TACAATGGTGTAGATCTAATCTACAAAGAGCTAGCTTACGAGTCAATTGCCCGTGAAGTCCAATGATCTTTGACGAAGGT
CCGTTTGTCTCTTATATTTGTAGACAGATGTCGGTAGTTTGGTTGCTAACTTTGAGGGACATG-----------------
--------------ATACGACCGGGCAGTCCTTCCCTTACGAGAATGATCTCTAAT--AATAGCTACATCCCGGACTAAA
TGCACCCATCATTATACCCTCTGAGTACTTGCTTGAGTGCAATGAGGCGCGAGATCCAGGGGTCCCTGGACACTCTTTTG
GGTAACTTAGTCTGAATGTACCATTGGACACGCCCTTCTCTCACTAGTTATCCTTACTAATCGACAAGCCTCCCACTAGT
ACGTGAAATGAGGTAGTGAACCTTGGTAGTTCTAAGGGGTTGAGTCTGAGGAGTATCATCCAATTGTTCCCATTCCAAGT
GTTTTCCCTATTTC-------------
>chr4B_1212
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------------------AGTTTGCTGCACATTGGACCGAGGATAATGACAAAGGATACTATGGAGTATCTGCTTTGATG
GATGTGTATGGACTCAATCTTAATCATGGACAAATGTCAGCGGGTGCAATTTGGATACAAAACTTGAAAGGAGATTTTGA
CAAAAATCTCAATTCAATTGTCGTTGGTTGGGTGGTAAGTCATCTTTTGAGCCTCTAGATTTCCT----TTATTTACATT
GGTACTAATTTGTTGTACTTTAGTATTTCTGAAAATATACTTATAGTTGCTAATAATTATGTAGGTTTGGCCATCTCGGT
TTAAGGACTCACATACTCACTTCTTCACAGTTTGGACAGTAAGTTTCTTCCGTTA-----------------ATATAGCC
CTCAAAAAAATTATCTCCTTTAT---TTTTTCTAAGATGTATATTTCTA--AGAGATACCCGATTTTAAGAAACTATATC
ATTAAGAAAGTCCACGAGAGGATTGGCTAAACTACTTCTCTAGGTCTTTTT-AACAAGGAAAATAATTAGTGGTTAGTCT
TGTGTAAATGCTTGACAGAGATAAGGAAATAATAACGGAAAAACTGAAGATGGAGGTAG-----------CAAGATAGAA
TTATATAATTTTTTGCC-CATACTGTAAAATAAATATAATTTATAAAATGAACAAATGGGATAGTAAAAATTATGGCATG
ACATTTAGACGACATGAATTGAACTGCAGAAAGATAGTCATCGGAGTACAGGGTGTGTCAACCTCAACTATCCTGGTTTT
CGACTGGTGAAGGGATCCCCCATATCTCCCGGTGACATCATAACCCCGGTGTCTGGTATCAATGGGAAACGGCATACTAT
TACCATTAAAGTGTACAAGGTACAGGTGCTAAACTTTGACTCGTTAAATATGTGGAAGTGGT----TTTTGGTCCAGTTG
TAATATAACAATTAACCTATCCATTTGCATGAATGAAATGGCAGGAAAGTTCAAGCGGGGACTGGTGGTTATCTTGTGGC
ATTGACAAAAACCCAATTCCGGTAGGTTACTTCCCAGCATCACTGTTTGATAGCTTATCAGTGAAAGCAACACAAATCAA
GATTGGAGGCCACGCTCT-----AAGTACTAAAACTACTATACCTCCTCCAATGGGAAGCGGAGCCTTTGCCTCTAACTC
GAATAAAGCTGCATTTATCCATGATATTTGGCTCATCCACAAGGACGGTATAAGCACCCCAATCGACAATGATGCGCCCA
CTAAAGTCACGGATGACAAGCTCTACTCTGCCTCACCTATAGGAAGAGCGAAATTCTATTATGGAGGGCCTGGAGGGGAA
TCGTAGTGAGGTGGATCTGAGGACCTATGTAATGCAATACATGAATAAAACATTGTAAGAAAGTATGGTAGTTTTTTTAG
TTTTCCA--TTGTAGGGCGATGCGTATTGACCTAATAAAAGTTTATTGAAATTGGAGAATGAATCACTATAATTATTATC
AGCCAAATTGTTAGTCATTATAGATGATTCATATTTTCATATTGTCCAAACCTAGTAAACAT-GTAGTTTGGATGTCCAA
TTATAATACTC-ATAGATTTATTTGTCAGTTTTTTTATTCACTGT--TTCACCTTAAGAGTGTCTAAGGCTCTGCACCCC
GTTGTGCCTGAACAGACACTCGGAAGGG----ATATGTGTATGCTCGGTCAGGGATTTGGATATTATGGGAGATACATTC
CCTTGTAACATCGAGATCACCCGATCGTATCGTGTCGGCAATTAATGCACCATTGAC-ATGGAGGTGACACGGTGAGTTT
ACCCAGGTTCTCGCTCCCAGATGGGT-AAACACCTTACGTCTAGCCCACTGACGTTATTAATTAAAAACAATGATAGGGT
TACAATGGTGTAGATCTAATCAACAAAGAGCTAGCTTACGAGTCAATTGCCTTGGAAGTCCAACAATCTTTGACTAAGGT
ATGTTTGTCTCTTATATTTGTAGACGGATGTCGGTAGTTTGATAGCTACCTTTGAGGGATATG-----------------
--------------ATATGATCGGGCAGTCCTTCCCTTACGGGAATGATCTCCAAT--AATAGCTACATCCCGTACTAAG
TGCACCCATCGTTATCCCCTCCGAGTACCTACTTGGGCGCAACGAGGCGCGAGATCTGAGGGTTCGTAGACACTGTTTTG
GGTAACTCAGTCTGAATGTACCATTGGACATGCCCTTCTCTCACTAGTTATCCTTA-TCATCGACAAGCCTCCCGCTAGT
ACGTGAAATGAGGTAGTGAACCTTGGTACTTCTAAGGGGATGAGTCGGGAGAGTATCATCCAATTGTTCTCATTCTAAGT
GTTTTGCCTATTTC-------------
>SNPs
-----------S-----------------------S--------S-------------------------SS--------
-S--------------------------------------S----------------------------------S----
------------------------------------------------------------------------S-------
--------------S-----------------------------------------------------------------
-----------------------------------------S----------------S---------------------
-----------------SS-----------------------------------S------------S------------
S--------------------------S---------------------------------S----S-------------
--------------------------------------------------------------------------------
-----S------------------------------------S--------------S----------------------
-------S-------------------------S-----------------S---------S------------------
-------S-----S----------S-------------------------------------------------------
-----------------------------------------------------------S--------------------
--------------------------------------------------------------------------------
----------------------------------------------------------S----S---------S------
----------S-------------------S----------------------------------------S--------
-S----SSSSS------S------------------S---S-----------S---------------------------
-----------------------------------------------------S--------------------------
--------------------------------------------------------------S------S----------
-------------------------------------S--S-------------------S-------------------
----------------------------------------------------------------------------S---
---------------S--------------S-------------------------------------------------
--------------------------------------------------------------------------------
--------------------S----------------------------------------------------S------
------------------S------------------------------------S------------------------
------------------------------------------S-------------------------------------
----------------------------------S---------------------------------------------
-------------------------S-----------SS-----------S-----------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------S-------------
-------------------------------S-----S--S-S-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------SS-----------------------------------S---------------------
--------------------------------------------------------------------------------
---------------------------------------------------S----------------S------S----
--------------------------------------S------SS------------------------S--------
--------------------------------------------------------------------------------
-------------------------S---S---S------S-------------------------S-------------
-----------------S-----------------------------S--------------------------------
-----S---------------------S----------------------------------------------------
--S-----------------------------------------------------------------------------
----------------------------------S----S-----------------------------S-----S----
-------------------S--S-------------------------S-------------------------------
-------------S------------S-----------------------------------------------------
---------------------S----------------------------------------------------------
----S--------------------SS
>forward_36
--------------CCTATGGCCTTCTGATGTGTTG--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------
>reverse_1211
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------AATTTCGCAGTTTGCCGTACA-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------
>forward_455
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------GTCGCGTGGAAATTAAGAGTAGT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------
>reverse_2363
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------ACTCCTCCTATGGGAAGTGGA-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------
>forward_1334
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------TGTCAGCGGGTGCAATTTGT--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------
>reverse_3001
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------GTTAATGCACCGCTGACCAC--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------
