>input_sequence_49388
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-------------------------------ATGTGCTTTAGCGGCAGTGAACTTCCTCAAGGTGCCTCCAGGGTCACTC
TACTCCACCGAACAAGCCACACCCGTCAGAGGTCAGACCACTACCAATCTACCATGGCAGCAGAGGAAGCAGGGAGCCGG
GACCCGCACGTCGTCCTCTTCCCCTTCCTCGCGCGCGGCCACATCCCCGCCTTCCTCCGCCTCGCCGGCCTCCTCCACGA
GCTGCGCCCGGGCATCGCCGTCACCCTCGTCTCCACCGCGCGCATCCTCGATTCCATCTCCCTCCCGCCCACCAACCCTC
CTATCCGCCTCCACGCGCTCCCGTTCGCGCCCGCGGACCACGGCCTGCCTCCCGGCGCCGACTCCCTCGCCGACCTCCAC
GTCCACCAGTTCATCACCTTCTTCCAGGCGTCCGAGTCCCTCCGCCCCGCCTTCGAAGCGTTCGTCTCCGGCATCCGGTC
CCCGGTCTGCATCGTCGCCGACGCCTTCTTCGGCTGGACGGCGGACGTCGCGCGCGCGCACCGCGCGTTCCACGCGGTCT
TCCTCACCGGCGGCGCCTTCGGCTTCGCCGTCTTCTTCTCCGTGTGGGAGCACCTGCCGCACAGGCTCGCCGCCGGCGAC
GAGTTCCCTCTGTCCGATTTCCCCACCGTCGTCCTCCACCGCACGCAGATCCCGCGGTACATGCTCGCGGCGACCGGGTC
CGATCCCTGGTCGGCCTTCTTCCGGCGGGTCATCCCGCTTTGCCGCAAGACCGATGCGGTGCTCGTCAACACCGTCCAAG
AGCTCGAGTCTTCCGGCCTAGACATGCTCAGGAGGACCTTCGGCGTCCAGCCATGGCCAATCGGGCCGATTCTCGCGGCG
CCGACGACTCCGTCGGACTCGCATGACGATGCCGGCATCATCCGGTGGCTGGACGCGCACCCGCCGCGCTCGGTCCTGTA
CATATCCTTCGGCTCGCAGAACAGCATCAACGCCGATCAGATGACGGAGCTGGCACTGGGCCTGGAGGCCAGCGGGCGGC
CGTTCCTTTGGGTCCTCCGGCCACCGCTGGGGCTCGACGCGAAGGACGGATTCAGGCCGGAGTGGCTCCCGGCAGGCTTC
GAGGAGCGAACGGCCGGGGCCAAGAGGGGACTGCTGGTGCGCGGCTGGGCGCCGCAGATGCGGATCCTGGCGCACCCGTC
CACCGGCGCGTTCATGAGCCACTGCGGGTGGAACTCCATCCTGGAGAGCCTGTGCCACGGCGTGCCGGTGATCGGGTGGC
CGCTGGGGGCCGAGCAGTTCTTCAACGCGATGCTGGTGGTGGAGTGGGGCGTCTGCGTGGAGGTGGCGCGGGGGAACATG
GAGAGCTCGGTGGTGGCGATGGGGGCCGTGGCCGACGCCGTGGGGACGGTGATGGGGGAGACGGAGAAGGGCGGCGAGAT
GAGAAGGAAGGCGGAGGTGATCGCGCGCGCGATGGCGGCCGCTTGGGAGGGACCGCGTGGGTCGTCGGCGGTGAGCTTGG
AGGGGTTCCTCGGATGCGTTGAAATTTGA---------------------------------------------------
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>chr2A_1_TraesCS2A01G360200
AAAGTCTATGTCTGCAATTGCTGGTTCATATGGCTATATTGCACCAGGTGAGTCTTAAGTTTTCTCCACATCCTACAAAG
CAAATTCCATTTGCATGTCACTGCTATCTTGCCCTATATGCTTTTTT-TTAACTTGAATCTGT-AGTTAAGCGATGAATG
GTCAACAAAGTATTGATCCAGTTCTTTTCATTTGATCAGAGTATGCGTACACCATGAAGGTGACTGAGAAATCTGACATA
TACAGCTATGGTGTCGTGCTGTTGGAGCTGCTAACCGGCCGTGCGCCTGTGCAACCGATAGAATTGGGAGGTGATCTGGT
AACATGGGCCAAAAATTACATCAGGGACAATTCTCTGGGTCCAGGGATATTTGACAGTAATCTTGATTTGGAAGATAAAG
CCGTCGTCGATCATATGATCGAGGTCTTGAAAATTGCTCTGCTATGTAGTAACCTGTCGCCGTACGAGAGACCGCCGATG
CGGCATGTTGTAGTTATGTTAAGCGAGTCCAAAGATAGGGCCCGGGCGAGCTCGGCGTCGTCGCCTGCTTCTGATAATTC
TTCGAAGAAGGATAGCTCATGATGTATTTATATATATAAGTTCAGTTAGTGAAAGGCAACCAATACCAGTTGCTCCCTTT
CCCCTGTTG---CTTATGGTGGGGATGTTGGGAGCATGCACTCATTCTTTCTGTCAATTGTTTTCTAGTGGGATAAATAA
TACTGACTGATAACAGTGGGATTGTGTATGTATGTTAGCCTCTCTGATGAAGAAGGTAGTCTCGAGTCCAGACAGTAACC
CCGAGTAGTTCAGC-CAGGGTTCCTCCCTGGACGTGGCGCTGTGCCTCTTGCTTAGATTTGGGTTTAGT------ATTGA
GATTTCTCAATGTTGAAATATGAATGTGCTTTTGCTGGAACAACATGGTCTTTCTGAACTTGTGACACTCCCAGCTGAGT
TGTATCTGAGCTTCCTCGGTGCAATTTTTATCTTAACTTTCTGAG-----------------------------------
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------------------------CTTATGAATGTGCTTTAGCGGCAGTGAACTTCCTCAAGGTGCCTCCAGGGTCACTC
TACTCCACCGAACAAGCCACACCCGTCAGAGGTCAGACCACTACCAATCTACCATGGCAGCAGAGGAAGCAGGGAGCCGG
GACCCGCACGTCGTCCTCTTCCCCTTCCTCGCGCGCGGCCACATCCCCGCCTTCCTCCGCCTCGCCGGCCTCCTCCACGA
GCTGCGCCCGGGCATCGCCGTCACCCTCGTCTCCACCGCGCGCATCCTCGATTCCATCTCCCTCCCGCCCACCAACCCTC
CTATCCGCCTCCACGCGCTCCCGTTCGCGCCCGCGGACCACGGCCTGCCTCCCGGCGCCGACTCCCTCGCCGACCTCCAC
GTCCACCAGTTCATCACCTTCTTCCAGGCGTCCGAGTCCCTCCGCCCCGCCTTCGAAGCGTTCGTCTCCGGCATCCGGTC
CCCGGTCTGCATCGTCGCCGACGCCTTCTTCGGCTGGACGGCGGACGTCGCGCGCGCGCACCGCGCGTTCCACGCGGTCT
TCCTCACCGGCGGCGCCTTCGGCTTCGCCGTCTTCTTCTCCGTGTGGGAGCACCTGCCGCACAGGCTCGCCGCCGGCGAC
GAGTTCCCTCTGTCCGATTTCCCCACCGTCGTCCTCCACCGCACGCAGATCCCGCGGTACATGCTCGCGGCGACCGGGTC
CGATCCCTGGTCGGCCTTCTTCCGGCGGGTCATCCCGCTTTGCCGCAAGACCGATGCGGTGCTCGTCAACACCGTCCAAG
AGCTCGAGTCTTCCGGCCTAGACATGCTCAGGAGGACCTTCGGCGTCCAGCCATGGCCAATCGGGCCGATTCTCGCGGCG
CCGACGACTCCGTCGGACTCGCATGACGATGCCGGCATCATCCGGTGGCTGGACGCGCACCCGCCGCGCTCGGTCCTGTA
CATATCCTTCGGCTCGCAGAACAGCATCAACGCCGATCAGATGACGGAGCTGGCACTGGGCCTGGAGGCCAGCGGGCGGC
CGTTCCTTTGGGTCCTCCGGCCACCGCTGGGGCTCGACGCGAAGGACGGATTCAGGCCGGAGTGGCTCCCGGCAGGCTTC
GAGGAGCGAACGGCCGGGGCCAAGAGGGGACTGCTGGTGCGCGGCTGGGCGCCGCAGATGCGGATCCTGGCGCACCCGTC
CACCGGCGCGTTCATGAGCCACTGCGGGTGGAACTCCATCCTGGAGAGCCTGTGCCACGGCGTGCCGGTGATCGGGTGGC
CGCTGGGGGCCGAGCAGTTCTTCAACGCGATGCTGGTGGTGGAGTGGGGCGTCTGCGTGGAGGTGGCGCGGGGGAACATG
GAGAGCTCGGTGGTGGCGATGGGGGCCGTGGCCGACGCCGTGGGGACGGTGATGGGGGAGACGGAGAAGGGCGGCGAGAT
GAGAAGGAAGGCGGAGGTGATCGCGCGCGCGATGGCGGCCGCTTGGGAGGGACCGCGTGGGTCGTCGGCGGTGAGCTTGG
AGGGGTTCCTCGGATGCGTTGAAATTTGAGACGTCC------GTGCGTTGAGATTTCCGCCTCGATGCTGTTACGGGGGG
ATTTTCCTGCAAAAAAAACAACGGTTTTGCTAAAACTCGGGCTGTGTTTGACAACAAAGCAGTGTAAAAACTGTGGTATT
GGAAAACTACGGTATTTTAAACTACAGGCACTAGATACCACAGTTTTCACATATTAAGGCCTCTTTTGGTTTATAGGATA
GGATTATCGTAGGAATAGGAATCTTGTAGGAAATGAGATGACATGTATCTCAAATCCTATGAGTAGGAATAGGAAACAAG
ATGTCATTTGGTTGACACCAAAGGAATTTTTCCATTGAGTCTAGGCTCATTTTTATTTTCCTATGAAATGTGGAGGATAG
GAACCAATCCTATGTAGGAATAGGAATCCATTCCTATGAACCAAAGGGCTCTAAAGGAAAAAATCCTATAAGAATCCTAT
CCTCTAGAAATCCTATGAAATTCCTACAAACCAAAGGAGGCCTAAAGTATTCTGTAGTATTGAGAATACTATGACGTGTT
TGGCTGGTGCTCATTTACAAAGACATAAATTAGCTAGATAGCCGTTTTATAGTTGCAACATCCACGTTCTTAGCTGGCCT
TCTGTTGAATCTCTCAAAAAGAAATGAATTTTGGTGTAAATCAATTAGGGATATGAGAGGGGATTTGAGAGAGGAGTTCA
CAATACAGAGAACTGGAGCGGCGGGGTGAGCTGCCGTCCATTTCTTTCCTTATCTTTATCTTCCTTCTTTACACTCTTGC
CCCCCTGACATTTATAATTTACACATTAGTATATAATCATACCAAATACAAATTTACCACTAAACTCAACACTCCCCCTC
AAGATGGGGCAAACACATCATATAACCCCATCTTGCTACATAAGCTAGAAAACACTTTTTCAGCGAGACCTTTGGTTAGA
ATATCCGCTAGTTGGTTTGAAGAGCTCACATAATGCATACATATTATCCCTTGGTCAAGTTTCTCTTTGATAAAG
>chr2D_1
AAAGTCTATGTCTGCAATTGCTGGTTCATATGGCTATATTGCACCAGGTGAGTCTTAAGTTTTCTCCACATCCTACAAAG
CAAATTCCATTTGCATGTCACTGCTATCTTGCTCTATATGCTTTTTTGTTTACTTGAATATGTAAGTTACGCGATGAATG
GTCAACAAAGTACTGATCCAGTTCTTTTCATTTGATCAGAGTATGCCTACACCATGAAGGTGACCGAGAAATCTGACATA
TACAGCTATGGCGTCGTGCTGTTGGAGCTGCTAACCGGTCGTGCGCCTGTGCAACCGATAGAGTTGGGAGGTGATCTGGT
AACATGGGCCAAAAATTACATCAGGGACAATTCTCTGGGTCCAGGGATCTTCGACAGTAATCTTGATTTGGAAGATAAAG
CCGTCGTCGATCATATGATCGAGGTCTTGAAAATTGCTCTGCTATGTAGTAACCTGTCGCCGTACGAGAGACCGCCGATG
CGGCATGTTGTAGTTATGTTAAGCGAGTCGAAAGATAGGGCTCGGGTGAGCTTGGCGTCGTCGCCTACTTCTGATTGTTC
TTCGAAGAAGGATAGCTCATGATGTATTTATATATATAAGTTCAGTTAGTGAAAGGCAATCAATACCCGTTGCTCCCTTT
CCCCTGTTG---CTTATGATGGGGATCTTGGGAGCATGCACTCATTCTTTCTGTCAATTGTTTTCTAGTGGGATAAATAA
TACTGACTGATAACAGTGGGATCGTGTATGTATGTTAGCCTCTCTGA---AGAAGGTACCGTCAAGTCCAGGCAGTAACC
CTGAGTAGTTCAGC-CAGGGTTCCTCCCTGGACGTGGTGCTGTGCCTCTTGCTTAGGTTTGGGTTTAGT------ATT--
----TCTCACAGTTGGAATATGAATGTGCTTTTGCTGGAACAACATGGTCTTTCTGAACTTTTGACACTCTCAACTGAGT
TTTATCTGAGCTTCCT----------------------------------------------------------------
------------AAACTTAGTGCAATTCA-------------------CGTTTTTTATCCGTTTGGGTCGATCGAAGGCA
TGCTGTCCAGCTGCGTCTGTCCAAACCTGGCCGGTGCGTCCAACG-----------------------------------
-----------------------------------GTAGTTCATACCGGCACACTTGCGAACCTTTCTCCGGCCAACCCT
CTTCGTTGACTGCATGGTCCACTGCTC--------------------------------------------GGACAGCCA
CGCCGTCAACCGTGACGGCGGGGACAGCGGCGGCGACGGGGTTTGTCGCGTCGGCCATGGTGAGTGGGCAGGGTGGCGAA
GGGTTTTGGGAGAGAGTGGGAAATGAGATGAATGTGCCACCGACGAATGGGTCAGGGGAGAAAAGAGTGGGAGTCACGCC
ATGC---GCCATGTCCGCCTCGACGCATACCGGGCTCAAATTTAGGCCGGAGATAGGTCGCGAGTGGATGAAAACCGGAT
AGGGTCCAT-TTATGTCGATGGGTTGGGCCGCAGTTTCTATCCGTTTTGACCCAAAACGAATCGCACGCGGACGGACAAA
ATTCGTCGCGCGTTGGGAGTTGCCCTTACGAATGTGGTTCTCAAGGTCCAG-------------GCCTCCAGGGTCACTA
TACTCCACCGAACAAGCGACACCCGTCAGAGGTCAGACAGACCA----CTACCATGGCAGCAGAGGAAGCAGGGAGGCAG
CACCCGCACGTCGTCCTCTTCCCCTTCCTCGCGCGCGGCCACGTCCCCGCCTTCCTCCGCCTCGCCGGCCTCCTCCACGA
GCGGCGCCCGGGCATCGCCGTCACCCTAGTCTCCACCGCGCGCATCCTCGATTCCATCTCCCTCCCGCCCACCAACCCTC
CTATCCGCCTCCAAGCGCTCCCGTTCGCGCCCGCGGACCACGGCCTGCCGCCCGGCACCGACTGCCTCGCCGACCTCCAC
GTCCACCAGTTCATCACCTTCTTCCAGGCGTCCGAGTCCCTCCGCCCCGCCTTCGAAGGGTTCGTCTCCGGCATCCGGTC
CCCGGTCTGCATCGTCGCCGACGCCTTCTTCGGCTGGACGGCCGACGTCGCCCGCGCGCACCGCGCGTTCCACGCGGTCT
TCCTCACCGGCGGCGCCTTCGGCTTCGCCGTCTTCTTCTCCGTGTGGGAGCACCTGCCGCACACGCTCGCCGCCGGCGAC
GAGTTCCCTCTGCCCGATTTCCCCAGCGTCGTCCTCCACCGCACGCAGATCCCGCGGTACATGCTCGCGGCGACCGGGTC
CGATCCCTGGACGGCCTTCTTCCGGCGGGTCATCTCGCTTTGCCGCAAGACCGATGCGGTCCTTGTCAACACTGTACAAG
AGCTCGAGTCCTCCGGGCTAGACATGCTCAGGAGGACCTTCGGCGTCCAACCATGGCCGATCGGGCCAATTCTCGCGGCG
CCGACGACTCCGTCGGCCTCGCAGGACGATGCCATCATATTCCGGTGGCTGGACGCGCACCCGCCGCGCTCGGTGCTGTA
CATATCCTTCGGGTCGCAGAACAGCATCAACGCCGATCAGATGACGGAGCTGGCACTGGGCCTGGAGGCCAGCGGGCGGC
CGTTCCTCTGGGTCCTCCGGCCACCGCTGGGGCTCGACGCGAAGGACGGATTCAAGCCGGAGTGGCTCCCGGCGGGCTTC
GAGGAGCGAACGGCCGGGGCCAACAGGGGACTGCTGGTGCGCGGCTGGGCGCCGCAGGTGCGGATCCTGGCGCACCCGTC
CACCGGCGCGTTCATGAGCCACTGCGGGTGGAACTCCATCCTCGAGAGCCTGTGCCACGGCGTGCCGGTGATCGGGTGGC
CGCTGGGGGCCGAGCAGTTCTTCAACGCGATGCTGGTGGTGGAGCGGGGCGTCTGCGTGGAGGTGGCGCGGGGGAACATG
GAGAGCTCGGTGGTGGCGATGGGGGCCGTGGCCGACGCCGTGGGGACGGTGATGGGGGAGACGGAGAAGGGCGGCCAGAT
GAGAAGGAAGGCGGAGGTGATCGCGCGCGCGATGGCGGCCGCTTGGGAGGGGCCGCGCGGGTCGTCGGCGGTGAGCTTGG
AGGGGTTCCTCGGATGCGTTGA-------GACGTCTGTGCCTGTGCGTTGAGATTTCCGCGTCAATGCTGTTCCGG----
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---------------------------------------------------------------------------
>chr2B_1
AAAGTCCATGTCTGCAATTGCTGGTTCATATGGCTATATTGCACCAGGTGAGTCTTAAGTTTTCTCCACATCCTACAAAG
CAAATTCCATTTGTATGTCACTACTATCTTGCCCTATATGCTTTTTT---TACTTGAATCTTT-AGTTAAGCGATGAATG
GTCAACAAAGTACTGATCCAGTTCTTTTCATTTGATCAGAGTATGCGTACACCATGAAGGTGACCGAGAAATCTGACATA
TACAGCTATGGCGTCGTGCTGTTGGAGCTGCTAACCGGCCGCGCGCCTGTGCAACCAATAGAGTTGGGAGGTGATCTGGT
AACATGGGCCAAAAATTACATCAGGGACAATTCTCTGGGTCCAGGGATATTCGACAGTAATCTCGATATGGAAGATAAAG
CCGTCGTCGATCATATGATCGAGGTCTTGAAAATTGCTCTGCTATGTAGTAACCTGTCGCCGTACGAGAGACCGCCGATG
CGGCATGTTGTAGTTATGTTAAGCGAGTCGAAAGATAGGGCCCGGGCAAGCTCTGCGTCGTCACCTGCTTCTGATCGTTC
TTCGAAGAAGGATAGCTCATGATGTATTTATATATATAAGTTCAGTTAGTGGAAAGCAATCAATACCAGTTGCTCCCTTT
CCCCTGTTG---CTTATGGTGGGGGT-TTGGGAGCATGCACTCATTCTTTCTGTCAATTGTTTTCTAGTGGGATAAATAA
TACTGACTGATAACAGTGGGATAGTGTCAAT-TGTTAGCCTCTCTGATGAAGAAGGTACCCTCGAGTCCAGACAGTAACC
CTGAGTAGTTAAGGTCAGGGTTCCTCCCTGGACGTGGTGCTGTGCCTCTTGCTTAGATTTGGGTTTAGTATTGAGATT--
----TCTCACTGTTGGAATATGAATTTGCTTTTGCTGGAACAACATGGTCTTTCTGAACTTGTGACACTCTCAGCTGGGT
TTTATCTGACCTTCCTCGGTGCAATTTTTGTCTAAACTTTCTAGCTGAGTTTTTTCTGACCTTCCTCGGTGCATCTTTTA
TCTGAACTTTCTAAACTTAGGGCAACTTCAGAAAGACACGGTTCTGTCCGCTTTTCATCCTTTTGGGTTAGCTGAAGGCG
CCTTGTCCAGCTGAGTCCGCCCAAACCTGGTTGGTGCACCCAATGGGCCGACGCATTTCGTCCGTGTGGCTGAATTTTTG
GCAAGCAAATTAAACCTAAATTAGGGCCAAAGGCCGTAGTTCATGCCGGTACACTTGCCAACCTTCATCTGGCCAGCCCT
CTTCGCTGACTGTATGGCCCGCTGCTCCGGCGTCTGCTTCTTAGGTTGCTTCTTGTGCACGGGGCGGGCCCGGACGGCCA
CACCATCGACCGTGGTGGCGGGGACAATAGCGATAGTGAGGTTTGGCACGTCGACCATGGCAGGAGGGCGGG-------A
GGGTTTTGGAAGAGGGGT-GAAATGAGGTGGATGTGCCACCGACGGGCGGACCAGAGAAGATAAGGGTGGGCGTCGCACG
CGTCGAAGCCATGTCCGCGCCAACGCGTACTTGGCCCGAATTTGGGCCT------GGTCACGGGCAGATGAAAAAACGGA
CGGGCGTTCGTTGCGTGGACGCGTTGGGCTGCTGTTTCTGTCCATTCGGGGCTGTTTCTGTCCAAATTCGACCCAAACAG
GGTT-----------GGACTTGCCCTTAGGAATGTGCTTCACAAGGTCTAGTCG-------------TCCAGGGTCACTC
TACTCCACCGAACAAGCCACCCCCGC-----------CAGACCA----CTACCATGGCAGCAGAGGAAGCAGGGAGGCAA
CACCCGCACGTCGTCCTCTTCCCCTTCCTCGCGCGCGGCCACATCCCCGCCTTCCTCCGCCTCGCCGGCCTCCTCCACGA
GCTGCGCCCGGGCATCACCGTCACCCTGGTCTCCACCGCGCGCATCCTCGATTCCATCTCCCTCCCGCCCACCAACCCTC
CTATCCGCCTCCACGCGCTGCCGTTCGCGCCCGCGGACCACGGCCTGCCGCCCGGCGCCGACTCCCTCGCCGACCTCCAC
GTCCACCAGTTCATCACCTTCTTCCAGGCGTCCGAGTCCCTCCGCCCCGCCTTCGAAGGGTTCGTCTCCGGCATACGGTC
CCCGGTCTGCATCGTCGCCGACGCCTTCTTCGGCTGGACGGCGGACGTCACGCGCGCGCACCGCGCGTTCCACGCGGTCT
TCCTCACCGGCGGCGCCTTCGGCTTCGCCGTCTTCTTCTCCGTGTGGGAGCACCTGCCGCACACGCTCGCCGCCGGCGAC
GAGTTGCCTCTGCCCGATTTCCCCACCGTCGTTCTCCACCGCACGCAGATCCCGCGGTACATACTCGCGGCGACCGGGTC
CGATCCCTGGACGGCCTTCTTTCGGCGGGTCATCTCGCTTTGCCGCAAGACCGATGCGGTCCTTGTCAACACCGTACAAG
AGCTCGAGTCCTCCGGGCTAGACATGCTCAGGAGAACCTTCGGCGTCCGACCATGGGCGATCGGGCCAATTCTCGCGGCG
CCAACGACTCCGTCGGCCTCGCAGGACGATGCCAGCATCATCCGGTGGCTGGACGTGCACCCGCCGTGCTCGGTCCTGTA
CATATCCTTCGGCTCGCAGAACAGCATCAACGCCGATCAGATGATAGAGCTGGCACGGGGTCTGGAGGCCAGCGGGCGGC
CGTTCCTCTGGGCCCTCCGGCCACCGCTGGGGCTCGACGCGAAGGACGGATTCAAGCCGGAGTGGCTCCCGGCCGGCTTC
GAGGAGCGAACGGCCGTGGCCAACAGGGGACTGCTGGTGCGCGGCTGGGCGCCGCAGGTGCTGATCCTGGCGCACCCGTC
CACCGGCGCGTTCATGAGCCACTGCGGGTGGAACTCCATCCTCGAGAGCCTGTGCCACGGCGTGCCGGTGATCGGGTGGC
CGCTGGGGGCCGAGCAGTTCTTCAACGCGATGCTGGTGGTGGAGTGGGGCGTCTGCGTGGAGGTGGCGCGCGGGAACATG
GAGAGCTCGGTGGTGGCGATGGGGGCCGTGACCGACGCCGTGGGGACGGTGATGGGGGAGACGGAGAAGGGCGGCGAGAT
GAGAAGGAATGCGGGGGTGATCGCGCGCGCGATGGCGGCCGCTTGGGAGGGGCCGCGCGGGTCATCGGCGGTGAGCTTGG
AGGGGTTCCTCGGATGCGTTGA-------GACGTCC------GTGCGTTGAGATTTCCGCGTCTATGCTGTTA-------
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>chr7A_163
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----ACAAAGTGTTGATCCCGTTCTTCTCATTTGATCAGAATATGCGTACACCATGATGGTCACTGAGAAATCTGGC--A
TACAGATATGGCGTTGTGTGGTTGGAGGTGCTAATAGGTAGTGCACATGTGCAACAAATATAACTGGGAGGTGATATCGT
AACATCGGCAAAAAATTACATCAGGGACAATTCTCTGGGCCCAGGGATCCTCGACATTAATCTGGATTTGGAAGATAAAG
CCGCTGTCGATCATT-----GAGTTCTTGGAAATTGCTCTGCTATGTAGTTACCTGTCGCTGTGTGAGAGATTGTTGATG
CGGCATGTTGTACTTGTGTTAAGCGAGTCAAAAGATAGGGCATGGGCGAGCTCCGCATCCTCGTCTGCTTCTGATCATTC
TTCCAAGAAGGATAGCTCATGATGTATGTT--TATATAAGTTCAGTTAGTGAAGG-----CAATAGCCGTTGTTCCCTTT
ACCTTGTTATTACTTATGGTGGGGATTTGTGGAGTCTGCACTTGTTCTTTC-----------------------------
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>chr3D_163
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----ACAAAGTGTTGATCCAGTTCTTCTCATTTGATCAGAATATGCGTACACCATGATGGTCACTAAGAAATCTGAC--A
TACAGTTATGGCGTTGTGCTGTTGGAGCTGCTAGTAGGTAGTGCACCTGTGCAACAAATATAACTGGGAGGTGATCTCAT
AACATGGGCCAAAAATTACATCAGGGACAATTCTCTGGGCCCAGGGATCCTCGACACCAATCTGGATTTGGAAGATAAAG
CCGCCGTCAATCATT-----GAGTTCTTGAAAATTGCTCTGCTATGTAGTTACCTGTCGCTGTGTGAGAGTCTGTTGATG
CAGCATGTTGTACTTGTGTTAAGCGAGTCGAAAGGTCGGGCATGGGCGAGCTCCGCATCCTTGTCTGCTTCTGATTATTC
TTCCAAGAAGGATAGCTCATGATGTATATT--TATATAAGTTCAGTTAGTGAAGG-----CAATACCCCTTGTTCCATTT
ACCTTGTTATTACTTATGGTGGGGATTTGGGGAGCCTGCACTCATTCTTTCT----------------------------
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>chr6B_163
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----ACAAAGTGCTGATCCAGTTCTTCTCATTTGATCAGAATATGCGTACACCATGATGGACACTGAGAAATCTGAC--A
TACAGTTATGGCGTTGTGCGGTTGGAGATGCTAATAGGTAGTGCACATGTGCAACAAATATAACTGGGAGGTGATCCTGT
AACATGGGCAAAAAATTACATCAGGGACAATTCTCTGGGCCCAGGGATCCTCGACACTAATCTGGATTTGGAAGATAAAG
CTGCTGTCGATCATT-----GATTTCTTGAAAATTGCTCTGCTATGTAGTTACCTGTCGCTGTATGAGAGATTGT-----
CGGCATGTTGTACTTATGTTAAGCGAGTCGAAAGATAGGGCCTGGGCGAGCTCCGCATCCTTGTCTGCTTCTGATCATTC
TTCCAAGAAGGATAGCTCATGATGTATGTT--TATATAAGTTCGGTTAGTGAAGG-----CAATACCCGTTGTTCCCTTT
ACCTTGTTATTACTTATGGTGGGGATTTGTGGAGTCTGCACTCATTCTTTC-----------------------------
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>chr5B_163
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----ACAAAGTGCTGATCCAGTCCTTCTCATTTGATCAGAATATGCGTACACCATGATGGACACTGAGAAATCTGAC--A
TACAGTTATGGCGTTGTGCGGTTGGAGGTGCTAATAGGTAGTGCACATGTGCAACAAATATAACTGGGAGGTGATCTCAT
AACATGGGCAAAAAATTACATCAGGGACAATTCTCTGGGCCCAGGGATCCTTGACACTAATCTGGATTTGGAAGATAAAG
CCGCTGTCGATCATT-----GATTTCTTGAAAATTGCTCTGCTATGTAGTTACCTGTCGCTGTGTGAGAGATTGT-----
CGGCATGTTGTACTTATGTTAAGCGAGTCGAAAGATAGGGCCTGGGCGAGCTCCACATCCTTGTCTGCTTCTGATCATTC
TTCCAAGAAGGATAGCTCATGATGTATGTT--TATATAAGTTCGGTTAGTGAAGG-----CAATACCCGTTGTTCCCTTT
ACCTTGTTATTACTTATGGTGGGGATTTGTGGAGTCTGCACTCATTCTTTC-----------------------------
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>SNPs
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--------------------------------------------------S-----------------------------
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-----------S--------------------------------------------------------------------
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-----------------------------S---------------------------------------------S----
-----------------------------------------------------------S--------------------
--------------------------S-----------------------------------------------------
----------------------S-----------------------------------SS--------------------
-S-----------------------------------S----------------------------------------SS
SSSS-----S-----S------------------------------------------------------S---------
-S---------------------------S---S--------SSS-----------------------------------
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----------------------------S----------S-SSS-SSS-SSS-SSSSSSSSSSS----------------
--------------------------------------SSSSSSSSSS----------------------------S-S-
S-------------------------------------------------------------------------------
---------------------------S----------------------------------------------------
-------------------------------------------------S------------------------------
----------------------------------------------------------S---------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------S----------------
------------S-------------------------------------------------------------------
----------S-----------------------S-------------------------S--S-----------S----
----------S-----S--------------------------------S--------S--------S------------
----------------S------S---------S----------------------------------------------
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-------S----------------------------------------------S------------------S------
-----------------------S---------------------------------S----------------------
------------------------------------------S-------------------------------------
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---------------------------------------------------S-----S----------------------
----------------------SSSSSSS-------------------------------S--S------------SSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_556
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--------------------------------------------------------GTCGTCGCCTGCTTCTGATA----
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------
>reverse_2476
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------CCAAG
AGCTCGAGTCTTCCG-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------
>forward_1739
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------TAGCGGCAGTGAACTTCCTC---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------
>reverse_3314
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------AACTCGGGCTGTGTTTGACA---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------
