>input_sequence_49387
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-------------------------------------------------------------------------------A
TGAGTAAGTACTCAGCTCTGGTTCACCTGGATTTGAGCAGCTTCAGCAGCGCCCTCGCCTTGGCCTTAGCCCTGGCGCCG
CACTGGCTCTGGAGCAGCAGCAGCAGCTGCGTCACCACCCCGGCGCCCACCGCCTCGCTCCGCGCCGCCCGCGACTCCCT
GCACACGGCCAGCAGCGCCGCCGCCGCGTGCTCGCTCCCGTCGTTGCTCGACGACATCATGAACACGTGCCTCACGAGAA
TGCGCGTTGCGCCGGGCGCGTGCGCCACCGCCCTGCGCCCGGCCTCCGTCTCCGCCAGCGCCTCCACCGCCGCCAGCGCG
CTGGACACGGCCCCGCCGCCCTTGACGTACGCCCACCACGACAGGTGCCTGAAGAGCGCGCCGACCGCGCCGTGGTGGAT
GGCGCTGCCACGCGCCGGCTCGGCCGCGCAGACCGCGGCGATCGCGCGCACCGCGGCCTCCGAGGCGCGCGCGTCGGGGG
CCGGGCCGGCGTGCTGCTGCAGGAGCGGCAGGAGCGCCTGCCACACGCGCGGCGAGGCGGCCACGACGAGCGCCAGGTCC
CGGGTCGCCGCGGCCGTGGCGACGGTCTCCAGGAGGCGGCACAGGCCTGCCTTGGCCCGGCCGCTGCCTCGCCCCAGCAG
CCGGACGAAGGACGCCAGGTGTTCCTCCTTCTTGAGCATGTTGAGGCAGTCGAGCTGCGGCGCAGCGGCGTTCGACGGCA
TGAGGCTGAGCGCGCACTGCAGCGCGAGCTCCTCCGCCTCCGCGTGGCGCTCCGCTGGCGCGGCCGGCGCGGCGTGGAAG
ACGAGCGGCAGTAGCACGCTCAGGAACCCCAGCTGCAGCATGCACGCGCGGCCGACGTCGGACTCGGACGCCAGCGCCAA
GACCTTCTTGAGCGCGCCGATCTTGGCGGCGGCGGAGGTGGCGTCGGACTGGAGGCACCGCTTGAGCGCCGCGAGCGACG
GATCGTCATCCGCCGACTCCGGGAGGCTGTGGTCGGTGGCGGCGGAGAGCCAGCGCTCGATGAGGTGGCGCAGGGTGCGG
TTGGGCACTAGCACGGTGGTGTCGCCGTCGCCGAGGGCCTGCATTGTGACGGGGCAGGTGCGGTGGCCGTCGGCGAGCCA
CCGCTCGATGCACTGGCGGTCGTACGTCTGCCCCGTGCACAGCGTCACCGGGTCCGTGAAGATGTCCAGGCTGATCGGAC
ACCGGAACAGGTGCGGCACGCTCATCTCTGGCACCC----GCAGAGATCAACACGAATCCAACAAGAAATGGAAGAACCT
AATCCCTC-----------------------------------------------GTCCAAGCAGGAAAAAGAGAATCAC
AAACCACTCCACTTATACCAACCAAGAACTCATCGAGAAAACCCCAAAAAGATGGCGAACAAATCTGCAGCTCCGGCCGA
TCGGTGGAGAAGCCCTTGTAGGCCGGGATCGACTTATTTCGAGGAATGCGGTCACACAGAAGGCTATTTTAACTGGCTGC
T---------GGCACTCAC------TCCCATGTCACTCCCATCAAGAATCCATGGCGATGTAA-----------------
--------------------------------------------------------------------------------
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-----------------------
>chr2A_1_TraesCS2A01G306900
CAGTATGGACGCAGGCAATCATATATACGCGCATACACTCATCCTTATGAACACACACGCAGACCCTACCTTTACGAGCA
CCTCTGAAAAACTGAACCGGCATATCATCTTAGGATTGACAAAGTCACCACACACGCCTCGTAGTCGACAGGAACATCTT
CTCTCACTGAACGCACATTGTCGGCAATTATGAAATAAATTCAGGAATAATACAAGCGCCAGAACTTGAACCCTGAT-GG
CTTGAGATACCACCTATCC-CCCAACCATGCAGCTACAGGTTAGTTTGCGATGAGTCTAGATTCTGAAATGGCGGGGTGT
GAGTGCGTTGCGTGCTTGTGTGCATCTTCGATTTGGATAAATAGTGATTATCCTTCTCGAAGTAGCATGTTTGTGCACGA
GAATGTAGTTCTGCCTCTCGGAATCGGATGATGACTTTGTTCCAATATAAAATAAAATAAAAATAAAAAATGAGTTAAAA
CTTTAGTTTGTAGCTCATGTGAT----AAAAAACTCGGGAGATAGAGTACATTTTGTGCTTGGT-------------TTT
TCATTTTCGCAGCTCAGAAATCAACAGCAAAATCTGGAAACAATATTGAACGATTTCGAAATTCGAAGACTAAATCAAAA
AGAAT-----------AGAATGCGGTGAGCGTGGATCGAACACGCGACCTTCAGATCTTCAGTCTGACGCTCTCCCAACT
GAGCTATCCCCGCTACGATGCTTCATAATTTGTAATTCCAGATTTATACCTAGATACATGATAGACAACTTAGTTTG-AC
AATTTTCCCAG----GTTAATGCAACTCCTACGTC--GCAGTTTCCCGTAGCAAAACAGTTGGAATCAAAAGAATCGCCA
CAATACATCCGGACAATTTAGTCTCTCAATTGACGCTTGAAGCTTCACAGAATTGCCACTACATAAGTT--GCACGCAAT
TGAATACCATGACATTGGCAGACATTCTTGACGCAGAAACTTACAGCTTACAAGAACATCTAGATCCTCGCTAACTCTAA
TGAGTAAGTACTCAGCTCTGGTTCACCTGGATTTGAGCAGCTTCAGCAGCGCCCTCGCCTTGGCCTTAGCCCTGGCGCCG
CACTGGCTCTGGAGCAGCAGCAGCAGCTGCGTCACCACCCCGGCGCCCACCGCCTCGCTCCGCGCCGCCCGCGACTCCCT
GCACACGGCCAGCAGCGCCGCCGCCGCGTGCTCGCTCCCGTCGTTGCTCGACGACATCATGAACACGTGCCTCACGAGAA
TGCGCGTTGCGCCGGGCGCGTGCGCCACCGCCCTGCGCCCGGCCTCCGTCTCCGCCAGCGCCTCCACCGCCGCCAGCGCG
CTGGACACGGCCCCGCCGCCCTTGACGTACGCCCACCACGACAGGTGCCTGAAGAGCGCGCCGACCGCGCCGTGGTGGAT
GGCGCTGCCACGCGCCGGCTCGGCCGCGCAGACCGCGGCGATCGCGCGCACCGCGGCCTCCGAGGCGCGCGCGTCGGGGG
CCGGGCCGGCGTGCTGCTGCAGGAGCGGCAGGAGCGCCTGCCACACGCGCGGCGAGGCGGCCACGACGAGCGCCAGGTCC
CGGGTCGCCGCGGCCGTGGCGACGGTCTCCAGGAGGCGGCACAGGCCTGCCTTGGCCCGGCCGCTGCCTCGCCCCAGCAG
CCGGACGAAGGACGCCAGGTGTTCCTCCTTCTTGAGCATGTTGAGGCAGTCGAGCTGCGGCGCAGCGGCGTTCGACGGCA
TGAGGCTGAGCGCGCACTGCAGCGCGAGCTCCTCCGCCTCCGCGTGGCGCTCCGCTGGCGCGGCCGGCGCGGCGTGGAAG
ACGAGCGGCAGTAGCACGCTCAGGAACCCCAGCTGCAGCATGCACGCGCGGCCGACGTCGGACTCGGACGCCAGCGCCAA
GACCTTCTTGAGCGCGCCGATCTTGGCGGCGGCGGAGGTGGCGTCGGACTGGAGGCACCGCTTGAGCGCCGCGAGCGACG
GATCGTCATCCGCCGACTCCGGGAGGCTGTGGTCGGTGGCGGCGGAGAGCCAGCGCTCGATGAGGTGGCGCAGGGTGCGG
TTGGGCACTAGCACGGTGGTGTCGCCGTCGCCGAGGGCCTGCATTGTGACGGGGCAGGTGCGGTGGCCGTCGGCGAGCCA
CCGCTCGATGCACTGGCGGTCGTACGTCTGCCCCGTGCACAGCGTCACCGGGTCCGTGAAGATGTCCAGGCTGATCGGAC
ACCGGAACAGGTGCGGCACGCTCATCTCTGGCACCC----GCAGAGATCAACACGAATCCAACAAGAAATGGAAGAACCT
AATCCCTC-----------------------------------------------GTCCAAGCAGGAAAAAGAGAATCAC
AAACCACTCCACTTATACCAACCAAGAACTCATCGAGAAAACCCCAAAAAGATGGCGAACAAATCTGCAGCTCCGGCCGA
TCGGTGGAGAAGCCCTTGTAGGCCGGGATCGACTTATTTCGAGGAATGCGGTCACACAGAAGGCTATTTTAACTGGCTGC
T---------GGCACTCAC------TCCCATGTCACTCCCATCAAGAATCCATGGCGATGTAACGTAACAGCAGCAGACG
AAACCCGTGAAGTGACCGCAGCAGGGTCGGTC---ACTGCGTGAGATGCCGGCCCCGGCCCCTATG---ATGGCCGTACT
TGATGCAGATGATGGGCAC---------CAAACAACAGGAGTCGCAGCAGCACAAGTGTCACAGGCAGTACTGGATAT-G
ATATGGGCTCTCTCTCTGTCTGTCTCTCTGCCTGTCTTGGAGGAGAGAGAGGGGAGAGGAGGAGCGAGGAAGACGAGGGA
GAGAGGAGGAGGTGTGTGCGATGGTCATGGCAAGATAAAGGCAGCCGCAGCGGCTGGAGAACTTTCTC-TTTTGGTGATA
GTCTTTGAAAGGGATTGGTCTGGTGATTGGACCAGTAC--GCCATGAGCGAGGAAAGTTGAATACTGGAAGGAAACATGG
GGGCGGTCAGAGTTGGGGACTGGCCGGAATGCATTGTGCAGCTTGGAACGGAACGGCCAACCTCAACTTGAGATGAGAGG
CTGCAGCATTTTTAAAATGGATTAATAG----------GCCTGTTCTGCCTGCAATTTGACTGCTGTTTTGCA---TACT
ATCCTGCAGCTTGCAAGGTCCAGAGAAATT-AGGGGCCAAAGGAGATCATGCTTTGAAAGTATAATGG------------
--------------------------AATGGGTAAATGTTTCTCTTCTCATCTGTGGGGTAAATGTCTTTGGTGTTACTG
TCTACATT---TGTGTGGTGTGGTACTGTTTGCCAACTGTGGACTATTCTGAGCTCTCGACTCCTCAGCAGTAAACCTTT
TCCTCCTTACATGGGTCTTGATTGTTCCATTTGCAGAAGATAGATTGCAGTACATTTAATGACTGTTATTAGTGTAT---
--GCCATAATGGCCTCAAA-TTGACATTATGACAGAAACAGGACTAATCCGTTAGATCCTTCCTTTCCCCTTCATTTTCG
GTGAATCTGAATTAGTACTCCATTGTATCATTGTATTGCTCGCTAAGAAGTGTATGCTTTGGTCCAGTTTGTCAGAAAAT
GTTGCGATAGCAGCAACAGTTGT
>chr2B_4
TATAGACA--GCAGGCGGTTATATATACGCGGATACACTCATCCCTACGAATG-------AGACCCTACCCCTATAAGCA
CTTCCGAGAGACTGAGCCGACATATTATCTTGAGACTGACAAAGTCATCACAGATGCCTCGTAATCGACGGGAACGTCTC
CTCCCACTGAACGCATATTGTCGAAAATCCTGAAATAAATTCAGAAATAATGCGAGCACCAGAACTTGGACCTTGATAGG
TTGGGGATACCATCTACCCTCCCAACCATCCAACTACAGATTGGTTCGTGATGAGTCTAGATTCTGAAATGGCGGGGTGT
T-------------------------------------------------------------------------------
------------------------------------------------------------------------AGTTAAAA
CATTAGTTTGTAGCTCATGTGATAAAAAAAAAACTCGGGAGATAGAGTACATCTTTAGATTTTCAAAAAGTGCTTGGTTT
TCCTTTTCGCAGCTCGGAAATCAACAGCAAAATCTTGAAACAATATTGAATGATTTCGA-------GGACTAAATTAGAA
AAAAAT-----------GAATGCGGTGAGCGTGGATCGAACACGCGACCTTCAGATCTTCAGTCTGACGCTCTCCCAACT
GAGCTATCCCCGCTAATATGCTTTCTACTTTGTAGTTAC----------CTAGATAAATGGTAGACAACTTAGTTTG-AC
AGTTTTCCCAGGTTAATTAATGCAACTCCTGCATC--GCAGTTTCCAGTAGCAAAACAGTTGGAATCAAAAGAATCGCCA
CAATACATCCGGATAATTTAATCTCTCAATTGACGCCTGCAACTTCACAGAATTGCCACTACATAAGTTTTGCACGCTAT
TGAATACCATGACATTGGCAGACATTCTTGACGCAGAAACTTACAGCTTACAAGAACATCTAAATCCTCGCTAACTCTAA
TG----AGTACCCGGCTCTGGTTCACCTGGATTTGAGCAGCTTCAGCAGCGCCCTCGCCTTGGCCTTAGCCCTGGCGCCG
CACTGGCTCTGGAGCAGCAGCAGCAGCTGCGTCACCACCCCGGCGCCCACCGCCTCGCTCCGCGCCGCCCGCGACTCCCT
GCACACGGCCAGCAGCGCCGCCGCCGCGTGCTCGCTCCCGTCGTTGCTCGACGACATCATGAACACGTGCCTCACGAGAA
TCCGCGTCGCGCCGGGTGCGCGCGCCACCGCCCTGCGGCCGGCCTCCGTCTCCGCCAGCGCCTCCACCGCCGCCAGCGCG
CTGGACACGGCGCCGCCGCCCTTGCCGTACGCCCACCACGACAGGTGCCTGAAGAGCGCGCCGACCGCGCCGTGATGGAT
GGCGCTGCCCCGCGCCGGCTCGGCGGCGCAGACCGCGGCGATCGCGCGGACCGCGGCCTCCGAGGCGCGCGCGTCCGTGG
CCGGGCCGGCGTGCTGCTGCAGGAGCGGCAGGAGCGCCTGCCACACGCGCGGCGAGGCGGCCACGACGAGCGCCAGGTCC
CGCGTCGCCGCGGCCGTGGCGACGGTCTCGAGGAGGCGGCACAGGCCTGCCTTGGCCCGGCCGCTGCCTCGCCCCAGCAG
CCGGACGAAGGACGCCAGGTTGTCCTCCTTCTTGAGCATGTTGAGGCAGTCGAGCTGCGGCGCAGCGGCGTTGGACGGCA
TGAGGCTGAGCGCGCACTGCAGCGCGAGCTCCTCCGCCTCCGCGTGGCGCTCCGCTGGCGCGGCCGGCGCGGCGTGGAAG
ACGAGCGGCAGGAGCACGCACAGGAACCCCAGCTGCAGCATGCACGCGCGGCCGACGTCGGACTCGGACGCCAGCGCCAA
GACCTTCTTGAGCGCGCCGATCTTGGCGGCGACGGAGGTGGCGTCGGACTGGAGGCAACGCTTGAGCGCCGCAAGCGATG
GATCGTCGTCCGCCGACTCCGGGAGGCTGTGGTCGGTGGCGGCGGAGAGCCAGCGCTCGATGAGGTGGCGCAGGGTGCGG
TTGGGCACGAGCACGGTGGTGTCGCCGTCGCCGAGGGCCTGCATTGTGACGGGGCAGGTGCGGTGGCCGTCGGCGAGCCA
CCGCTCGATGCATTGACGGTCGTACGTCTGCCCCGTGCACAGCGTCACCGGGTCCGTGAAGATGTCGAGGCTGATCGGAC
ACCGGAACAGGTGCGGCACGCTCATCTTCGGCACCCTCAGGCAGAGATCAACACGAATCCAGCAAGAAATGGAAGAAGCT
ACGACGCCCACACAAGAGCACGAACCCAGCAAGAAATG------------CCTTTGTCCAAGCAGGAAAAAGAGAAAAAC
AAACCACTCCACTCATACCAACCAAGAACTCATCAAGAAAACCCCCAAAAGATGGCAAACAAATCTGCAGCTCCGGCCGA
TCGGTGGAGAAGCCCTTGTAGGCCGCGATCGACTTATTTCGAGGAATGCGGTCACACAGAAAGCTTTCTTTAAACTCGTT
GGAGGTTGGAGGCACTCACTCCCAGTCCCATGCCACTCCCATCAAGAATCCATGGCGATGTAATGTAACGGCAGCAGACG
AAACCCGTGAAGTGACCGCAGCAGGGTCGGTCGTCACTGCGCGAGATGCTGGCCCCGGCCCCGGCCCCTATGGCCGTACT
TGATGCAGATGATGGGCACAAGGCTGGCCAAAGAACAGGAGTCGCAGCAGCACAAGTGTCGCAGGCAGTACTGGATATGG
ATATGGGCTCCCTCTCTGTCTCTCTGTCTGGGAGGAGAGAGAGAGAGAGGAGGGAGAGGAGGAGCGAGGAGGAC----GA
GAGAGGAGGAGGTGTGTGCGACGGTCATGACAAGATAAAGGCAGCCGCAGCGGCCGGAGAACTTTCTCTTTTTGGTGATA
GTCTTTGAAAGGGATTGGTCTGGTGATTGGACCAGTAC--GCCATGAGCGAGGAAAGTTGAATACTGGAAGGAAACATGG
GGGCGGTCAGAGTTGGGGACCGGCCGGAATGCAATGTGCAGCTTGGAACGGC-----------CAACTTGAGATGAGAGG
CTGCAGCATTTTAAAATGGATTT-ATAA----------GCCTGTTCTGCCTGCAATTTGACTGCTGTTTTGCA---T---
ATCCTGCAGCTTGCAAGGTCCGGAGAAATTTACGGGCCAAAGGATATCAACTTCTGAATTATACTGGGAAATGGGACAGG
CCCAAACAGGGCTAGTGTATATGTATAATGGGTCAATGTTTCTATTTTTATCTGTGAGGTAAATCTCTTTGGTGTTACTG
TCTACTACATGTGTGTGGCGTGGTACTGTTTGCCAACTGTGGACTATTCTGAATTCTCAACTCTTCGGTAGT-AAACTTT
TCCTCCCTACATGGATCAGGATTGTTCCATTTGCAGAGCATAGATTGCAGTACATTTAATGACTGTTATTTGTGTAT---
--GCTATAATGACCTCAAA-TTGACATTATGACAGAAACAGGACTAATCCGTTAGATCCTCCCTTTCCCATTCATTTTCG
GTGAATCTGAATTTGTACTCCATTGTATCATTGTATTAATCGCCAAGAACAGTATGCTTTGGTACAGTTTGTCAGAAAAT
GTTGCGATAGCAGCAACAGTTGT
>chr2D_550
--------------------------------------------------------------------------------
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--------GCAGTTCACAAATCAAGTGCAAAATCTAGAAACAATTTTGAATGAGTTAGA-------AGACTAAATTTAAA
TTTCAATAAAAAGAAGAGAATGCGGTGAGCGTGGATCGAACACGCGACCTTCAGATCTTCAGTCTGACGCTCTCCCAACT
GAGCTATCCCCGCTATTCTGTCAAGTATTTTGTACTTTCCTATTTAAAAGTGGGCAACTGTTAGACTACTTAAATCGAAC
AATCTTTCCAG----ATTAATGGTACGCCTACATCTTGCTGTTTCCAGTAACAAAACAGTTCAAATCAAGAGAATCACCA
CAATACGTCCGGGCAATTTAATCTCACAGAGTT------------------------ACTACATAAATT--GCACGGAAT
TGAATACCATGTCATTGGCAGACATTCTTGACGCAGAAACTTACAGCTTACAAGAACATCTAAATCCTCGCTAACTCTAA
TG----AGTACTCAGCTCTAGTTCACCTGGATTTGAGCAGCTTCAGCAGCGCCCTCGCCTTGGCCTTAGCCCTGGCGCCG
CACTGGCTCTGAAGCAGCAGCAGCAGCTGCGTCACCACCCCGGCGCCCACCGCCTCGCTCCGCGCCGCCCGCGACTCCCT
GCACACGGCTAGCAGCGCCGCCGCCGCGTGCTCGCTCCCGTCGTTGCTCGATGACATCATGAACACGTGCCTCACGAGAA
TCCGCGTTGCGCCGGGCGCGCGCGCCACCGCCCTCCGGCCGGCCTCCGTCTCCGCCAGCGCCTCCACCGCCGCCAGCGCG
CTGGACACGGCCCCGCCGCCCTTGCCGTACGCCCACCACGACAGGTGCCTGAAGAGCGCGCCGACCGCGCCGTGGTGGAT
GGCGCTGCCACGCGCCGGCTCGGCCGCGCAGACCGCAGCGATCGCGCGCACCGCAGCCTCCGAGGCGCGCGCGTCGGGGG
CCGGGCCGGCGTGCTGCTGCAGGAGCGGCAGGAGCGCCTGCCACACGCGCGGCGAGGCGGCCACGACGAGCGCCAGGTCC
CGCGTCGCCGCGGCCGTGGCGACGGTCTCCAGGAGGCGGCACAGGCCTGCCTTGGCCCGGCCGCTGCCTCGCCCCAGCAG
CCGGACGAAGGACGCCAGGTTGTCCTCCTTCTTGAGCATGTTGAGGCAGTCCAGCTGCGGCGCGGCGGCGTTCGACGGCA
TGAGGCTGAGCGCGCACTGCAGCGCGAGCTCCTCCGCCTCCGCGTGGCGCTGCGCTGGCGCGGTCGGCGCGGCGTGGAAG
ACGAGCGGCAGGAGCACGCAGAGGAACCCCAGCTGCAGCATGCACGCGCGGCCGACGTCGGACTCGGACGCCAGCGCCAA
GACCTTCTTGAGCGCGCCGATCTTGGCGGCGGCGGAGGTGGCGTCGGACTGGAGGCACCGCTTGAGCGCCGCAAGCGATG
GATCGTCGTCCGCCGACTCCGGGAGGCTGTGGTCGGTGGCGGCGGAGAGCCAGCGCTCGATGAGGTGGCGCAGGGTGCGG
TTGGGCACGAGCACGGTGGTGTCGGCGTCGCCGAGGGCCTGCATTGTGACGGGGCAGGTGCGGTGGCCGTCAGCGAGCCA
CCGCTCGATGCATTGACGGTCGTACGTCTGCCCCGTGCAGAGCGTCACCGGGTCCGTGAAGATGTCCAGGCTGATCGGAC
ACCGGAACAGGTGCGGTACGCTCATCTCTGGCACCC----ACAGAGATCAGCAGGAATGCAACAAGAAATGGAAGAAGCT
A-GACGCCCACACAAGAGCACGGACCCAGCAAGAAATGGAAGAACCTAATCCTTCCTCCAAGCAGGAAAAAGAGAATCGC
AAACCACTCCACTCATACCAACCAAGAACTCATCAAGAAAA-CCCCAAAAGATGGCAAACAAATCTGCAGCTCCGGCCGA
TCGGTGGAGAAGCCTTTGTAGGCCGCGATCGACTTATTTCGAGGAATGCGGTCACACAGAAAGCTTTTTTTTAACTCGTT
GGAGGTTGGAGGCACTCAC------TCCCATGCCACTCCCATCAAGAATCCATGGCGATGTAATGTAACAGCGGCAGACG
AAACCCGTGAAGTGACCGCAGCAGGGTCGGTC---ACTGCGTGGGATGCCGGCCCCGGCCCCTATG---ATGGCCGTACT
TGATGCAGATGATGGGCACAAGGCTGGCCAAACAACAGGAGTCGCAGCAGCACAAGTGTCACAGGCAGTACTGGAAAT-G
ATATGGGCTCTCTCTGTGTGTGTCTCTCTGTCTTGGAG--GAGAGAGAGGAGGGGGAGGAGGAGCGAGGAGGAC----GA
GAGAGGAGGAGGTGTGTGCGATGGTCATGGCAAGATAAAGGCAGCCGCAGCGGCTGGAGAACTTTCTCTTTTGGTGG-TA
GTCTTTGAAAGGGATTGGTCTGGTGATTGGACCAGTACACGCCATGAGCGAGGAAAGTTGAATACTGGAAGGAAACATGG
GGGCGGTCAGAGTTGGGGACTGGCCGGAATGCAATGTGCAGCTTGGAACGGC-----------CAACTTGAG-----AGG
CTGCACCATTTTAAAAATGGATTAATAAGAGGCTGAACGCCCGCTCTGCCAGCAATTTGACTGCTGTTTTGCATACT---
ATCCTGCAGCTTGCAAGGTTCAGAGAAATT-AGGGGCCAAAGGAGATCATGCCTTGAAAGTATAATGG------------
--------------------------AATGGGTAAATGTTTCTCTTCTCATCTGTGGGGTAAATGTCTTTGGTGTTACTG
TCTACATT---TGTGTGGTGTC--ACTGTTTGCCAACTGTGGACTACTCTGAACTCTCAACTCTTCAGCGGT-AACCTTT
TCCTCCCTACTCTACATGGGTCATG-----------------------AGTACATTTAATGACTGTTATTAGTGTACAGT
ACGCTATAATGACCTAAAAATTGACATTATGACAGAAACAGGGCTAATCCGTTAGATCCTTCC-TTGCCCTTCATTTTTG
GTGAATCTGAATTA------------------------------------------------------------------
-----------------------
>SNPs
S-SSSSSSSS------SS-S-----------S------------S--S---SSSSSSSSS----------SS--SS----
-S--S--S-S-----S---S-----S-----SS--S-----------S----S-S--------S-----S-----S---S
---S-----------S-------SS---SS--------------S------S-S---S----------S---S-------
S-S-S-------S---S------------S--S------S--S---S-S-------------------------------
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------
-S--------------------------------------------------S--SS-S--SSS----------------
--S--------------------------------S--------------S--------SSSSSSS---------S----
-S--S---------------------------------------------------------------------------
---------------SS------SS--S------S--S-SS-----S-S-------S---S-------------------
---------------S----------------S-------------S---------------------------------
--------------------S---------------S--S-S--------------------------------------
--------------------------------------------------------------S-----------------
--SSSS--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-S------------------S----------------S------------------------------------------
------------------------S-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--S-----------------------------------------------------------------------------
--------------------SS----------------------------------------------------------
--------------------------------------------------------------------------------
-----------S-------S------------------------------------------------------------
------------------------------------------------------------------------S-----S-
-------S------------------------------------------------------------------------
--------S-----------------------------------------------------------------------
------------S--S----------------------------------------------------------------
-----------------------------------------------------------------------------S--
-SSS-SS-------------------------------------------------------------------------
-------------S--------------------S----------S----------S-----------------------
-------------------------S-----------------------------------S---S----S-SSSS-SSS
S-------------------------------S------------------------------S----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------S---SSSS-SSS-------SS-------------------S---SSSS--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------S-----------------SSSSSSSSSSSS-----------------
------------S--------------S-------------------------------------------------SSS
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------S-----S----S--------S-------
------S-------S--SS------------------SS-----------------------------------------
----S------S--------------------------------------------------------------------
-------------------------------------SS----S-----SS------------S----------------
-----------------------
>forward_184
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----CACTGAACGCACATTGTCGG--------------------------------------------------------
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>reverse_2173
--------------------------------------------------------------------------------
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------------CTGGCGGTCGTACGTCTG--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------
>forward_273
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------CCTATCCCCCAACCATGCAG-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_2318
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-----------------------------------------------------------------------------CCT
AATCCCTCGTCCAAGCA---------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------
>forward_430
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------CTGCCTCTCGGAATCGGATG--------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_2324
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---CCCTCGTCCAAGCAGGAAAA---------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------
>forward_847
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---------------------------CTCCTACGTCGCAGTTTCCC---------------------------------
--------------------------------------------------------------------------------
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>reverse_2878
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-----------------------------------------------------------------------------GGA
GAGAGGAGGAGGTGTGT---------------------------------------------------------------
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-----------------------
