>input_sequence_49369
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--------------------------------------------------------ATGGCGTTGGCCGGCGGAGA----
-----TGCTCGCGGCGAGCTCGTCTGCGTGACCGGCGGCAGCGGCTTCATCGGCTCCTGGCTCGTCCGCCTCCTCCTCGG
CCGCGGCTACACCGTCCACGCCACCGTCCAGAACCTCCGTACGTAC----CT-------CTCCTCCTCTGTCTCTCTCC-
-----GTAAATGAATCGAGTCGACGCAAGATTGTTTGATCGGACTGATTTTCCAGAGGACGAGGCCGAGACGAAGCACCT
GCAGGCTCTGGATGGCGCGGACACGCGGCTCCGGCTGTTCCAGATGGACCTCCTCGACCCCGCCTCCGTCCGGCCGGCGG
TCGAGGGCGTCCACGGCGTCTTCCACCTGGCCTCCCCCGTGATACTGCAGCCCGCACAAGACCCCGAGGCAACTTTTCTT
TCTTTCTCCACAATAATAACTC----------------------------------------------------------
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------CATTGCCGCGCCATAGTTCAGACTTCAGAGTTCCATCACTGCACAGTCTGAATAATATACGCAAGCTAACTGGT
TCTCTGATCGATCGACGCAGAACGAGCTGCTGCTGCCGGCGATCAACGGCGCGCTCAACGTCCTCCGCGCGGCGAAAGAC
AGCGGGGTCAAGCGTGTCGTGATGGTGTCTTCGCAGACGGCCATGTGTCC---GACTGCCGCCGACTGGCCTGCCGGCAA
GGTCATAGACGACGACTGCTGGGCCGACGTTGAGATCCTCAAGAAACTTGAGGTGC-----ATCATGTCAACGCTTGCAA
GATCCATTTAGATACTGCACTTCTAGAGTTAAGCACTCATGCTCAATCCCTCTGTCTGAACTGCAGCTTTGGTACAACGT
CTCCAAAACGCTGGCCGAGAAGGCGGCGTGGGACTTCGCCGGAGAGGAAGGATTGCAGCTGGTTGTGCTGAATCCGGGGT
TGGTGTTGGGCCCGACGTTGACCCCGGCACCTACTGGTAGCCTCCGTCTGCTGATGCTGCTTCTGGGAGGTCGGTCGATT
ACAAGTTCAACATACAGAGTCTT--GCAGCTCCGTGGCAATTCCTGAACTCTGTCTTCTGCTGCTGAGTTGCAAGTTGCA
ACGCAGAAAAGCTTTATTTCGACTTTCTAAGAGTGAAAACTGCAAATTACATTACCCAGGCCAGAAGCTTGACATGGAAC
CCTTCTTCGTCGGCTGCGTCGACGTCAGAGATGTGGCACAATCTCTGGTGGTGCTCTATGAGAACCCGTCGGCGCAGGGA
CGCCACCTGTGCATGGAGTCAGCCGTACGCCTCGTCGATTTCCACGATGAACTTGCTAATCTTTACCCCGAATTTCCGGT
TCACAGGTGATACATCTACTGATTAGCAACATCGATCGTCTCTTCCTCAGATGGAGTGTTCTAATGT--TTGCTGATTTC
TTCTCTTCACTTCAGGATCCAGGAGGACAAGCAGGGCTGGGTGGTGAGATCAAAGGCTCCGTCCAAGAAACTGATCGATC
TGGGCGTTCGTTTCACCCCATTCGACAAAACTGTCAGGGACACGGTGGATTGCTTGAGGAACAAAGGAGAAATCTAG---
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>chr3D_1_TraesCS3D01G342200
CACGGTTAGCAGGTAAGACCCGCCCTGATGGATGACACGTGGCATTCACAAATCACAAAGCATCTAATCTCTCCCCCCTG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATGCTTTGTGATT
TGTGAATGCCACGTGTCATCCATCAAGATGGGTCTCACGTGAGACCTGATCTCATAGAATTCTTTTCCCCTCCCTAAGGT
CACTTATTTGCTCCTAATTTGAAGATGAGCAATGCATGATTTAAATTGTTTGCTCTAATCGGCCCCTCTCAACATGCATA
TTTATCAAATCCTGCCTCCACCACTGTTACACCACCGTTCCTGCGGGCGGAAAACACCACCAATCATGTGTGACGCATTT
CTCCGGGTCGTACTCCTGCCTCTTGCCGCAGGACTCTGAAGCTTCGTGGTGCGGTCATGTCACGTGTCTGTCGTTTCCTA
GTGGCCTCCCGTCCCGGGTGTGCATCAGAGGGAATCTGACGCTCTATCTAGTGCCGTCCTTGCAGCATGCTACATGGCTG
CAATCTACTGGGCTGGTGGCCAAACTGGGCCAGTCTTGTCCTTACGGCGTACACGATCAACAGCGACCTGAAATAATGGC
GGTCATCGACGCGGGTAG----ATGTGGATTCTTCCCCGGGATAATAATGCTGATAAACTTCAGCATTCGATCGTGTTCT
CTGGCGTCCAAATCGACACCTTGGTTGCAGCC-GCGTCACGGGG-----------CTCCCCTCTCGTCGCGTCAACGCCC
CAAGCCGCTCTGCTTCTTTTTTATGGTTGAGGAAGTAGGTACAGTTCACAAGGAGCCAGGGAAGTGCCGAGTTGACCGTT
TGATTGTGTCCAGTAGGTGAGCGGCAGACGGGCGGATCGTCCCGAGCACCGGCGACATGGCGTTGGCCGGCGGAGA----
-----TGCTCGCGGCGAGCTCGTCTGCGTGACCGGCGGCAGCGGCTTCATCGGCTCCTGGCTCGTCCGCCTCCTCCTCGG
CCGCGGCTACACCGTCCACGCCACCGTCCAGAACCTCCGTACGTAC----CT-------CTCCTCCTCTGTCTCTCTCC-
-----GTAAATGAATCGAGTCGACGCAAGATTGTTTGATCGGACTGATTTTCCAGAGGACGAGGCCGAGACGAAGCACCT
GCAGGCTCTGGATGGCGCGGACACGCGGCTCCGGCTGTTCCAGATGGACCTCCTCGACCCCGCCTCCGTCCGGCCGGCGG
TCGAGGGCGTCCACGGCGTCTTCCACCTGGCCTCCCCCGTGATACTGCAGCCCGCACAAGACCCCGAGGCAACTTTTCTT
TCTTTCTCCACAATAATAACTC----------------------------------------------------------
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------CATTGCCGCGCCATAGTTCAGACTTCAGAGTTCCATCACTGCACAGTCTGAATAATATACGCAAGCTAACTGGT
TCTCTGATCGATCGACGCAGAACGAGCTGCTGCTGCCGGCGATCAACGGCGCGCTCAACGTCCTCCGCGCGGCGAAAGAC
AGCGGGGTCAAGCGTGTCGTGATGGTGTCTTCGCAGACGGCCATGTGTCC---GACTGCCGCCGACTGGCCTGCCGGCAA
GGTCATAGACGACGACTGCTGGGCCGACGTTGAGATCCTCAAGAAACTTGAGGTGC-----ATCATGTCAACGCTTGCAA
GATCCATTTAGATACTGCACTTCTAGAGTTAAGCACTCATGCTCAATCCCTCTGTCTGAACTGCAGCTTTGGTACAACGT
CTCCAAAACGCTGGCCGAGAAGGCGGCGTGGGACTTCGCCGGAGAGGAAGGATTGCAGCTGGTTGTGCTGAATCCGGGGT
TGGTGTTGGGCCCGACGTTGACCCCGGCACCTACTGGTAGCCTCCGTCTGCTGATGCTGCTTCTGGGAGGTCGGTCGATT
ACAAGTTCAACATACAGAGTCTT--GCAGCTCCGTGGCAATTCCTGAACTCTGTCTTCTGCTGCTGAGTTGCAAGTTGCA
ACGCAGAAAAGCTTTATTTCGACTTTCTAAGAGTGAAAACTGCAAATTACATTACCCAGGCCAGAAGCTTGACATGGAAC
CCTTCTTCGTCGGCTGCGTCGACGTCAGAGATGTGGCACAATCTCTGGTGGTGCTCTATGAGAACCCGTCGGCGCAGGGA
CGCCACCTGTGCATGGAGTCAGCCGTACGCCTCGTCGATTTCCACGATGAACTTGCTAATCTTTACCCCGAATTTCCGGT
TCACAGGTGATACATCTACTGATTAGCAACATCGATCGTCTCTTCCTCAGATGGAGTGTTCTAATGT--TTGCTGATTTC
TTCTCTTCACTTCAGGATCCAGGAGGACAAGCAGGGCTGGGTGGTGAGATCAAAGGCTCCGTCCAAGAAACTGATCGATC
TGGGCGTTCGTTTCACCCCATTCGACAAAACTGTCAGGGACACGGTGGATTGCTTGAGGAACAAAGGAGAAATCTAGCCT
CCAAACAAATGTACATTTGCAGGAATAAATTCTGCTGGAAAACTGC-CGCGGTGCATAGACATAAAGCGAATAAAGTTGA
GTTGAACTACTATGTGAGGATGTTGTACAATGGCGCTTCACGGGTTTTTATGGTAATCCAAATTGGAGTGATTGTCACTT
GTCTTGGGGTGATATTCGTAATTTTCATAATAAGGACACTCATCCTTGGATCGTCTTAGGAGATTTTAATGAAATTTTAT
ACTCTTTGGAAATCATGGGTGGT-AATGCGAGACCTAATGCAATGATGGAGTTCCGTGATTGTCTCATAGAGCGTGGTTT
GGACGATTTGGGTTTCCCTGGCGATCCTTTTACCTCGAGAAGAGGTGAAATCAGGTAACAACTGGACCGGGCAGTTTGCA
ATGTGGACTGGGCACATAAATTTCTTCGGATTGCATTTATTAACGAGGAACACGTACACTCTGACCAAAGCATGTTGGTT
CTGGATATGGATTATTTCGGTGACAATATGTTTAGTCGTCCGAAGAGCCGTGTGAAACAATTGGAAGGCAGGTGTCTGAA
ACAAGAGACCGTTGTTGAAATTGTCACGTCGTCCTGAAAAAGGCCAATATGGCGGGTGTTGGTCCGTCCCTCGCAGAGCG
GACCCGAGTGGCGCATGCCGATTTGCATTCTTGGGATCGTGAAACTCTGAAGAGACTGAAATGTAGAA------------
---------------------------------------------------------TAAAAATTTAAAGAATGAATTAG
AGAGGCTGGAGCGTGGCCCTTTGAATGCCAAGTCTCACTCTCGGCAAAAGGAACTTCTAGTTCTCATAGAGAATCTTTTG
GATCAAGATGAAAAAAAATGGTTACAAAGAGGTCGAGCAAATTGGTTGATGTATGAGGATCGTAATACATCATTTTCCAT
AACGCAGCCATGGCCAGGATAAAAGAATAGTATTAAGAAACTCCTTGATGATTCAGGGGTTTGGCGGCAAGCTATGGAGT
TGAAGGATCATATCACAGAATATTTTTC----------------------------------------------------
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>chr3A_457
CCACC---------------------------------------------------------------------------
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--------------------------------------------------------------ATGATGCGTGACACATTT
CTCCGGGCCGTACTCCT--CTCTTGCCGCAAGACTCCGAAGCTTCGTGGTGCGGTCGTGTCACGTGTCTATCGTGCCCTT
GTGGCCTCCCGTCCCGGGTGTGCATCAGAGGGAATCCGACGCTCTGTCCACTGCCGTCCTTGCGAGAGCATACATGGCTG
CAATCTACTCGGGTGGTGGCCAAACTGGGCCAGTGTTGTCCTTACGGCGTACACGATCAACAGCGACCTGAAATAATGGT
GGCCATCGACGCGGGTAGCTAGATGTGGATTCTTCCACGGGATAATAATGCAGATGAATTTCAGCATGCGATCGTGTTCT
CTGCCGTCCAAATCGGCACATTGGTTGCAGCCCGCGTCACGGGCTGACGGCACGCCTCCCCTCTCGTCGCGTCTCGCCCG
T------------------------GTTGAGGAAGTAAGTGCAGTTCACAAGGAGCCAGGGAAGTGCCGAGTTGACCGTT
TGTCTGTGTCCAGTAGGTGAGCTGCTGACGGGCGGATCGTGCCGAGCACCGGCGAGATGGCGTTGGCCGGCGGAGA----
-----TGCTCGCGGCGAGCTCGTCTGCGTCACCGGCGGCAGCGGCTTCGTCGGCTCCTGGCTCGTCCGCCTCCTCCTCGA
CCGCGGCTACACCGTCCACGCCACCGTCCAGAACCTCCGTACGTTTCGTGCCTCCTCTCCTCCTCCTCTCTCTCTCACC-
-----GTAACTGAATCGGGTCGACGCAATATTGTTTCACCGGACTGATTTTGCAGAGGACGAGGGCGAGACCAAGCACCT
GCAGGCTCTGGATGGCGCGGACACGCGGCTCCGGCTGTTCCAGATGGACCTCCTCGACCCCGCCTCCGTCCGGCCGGCGG
TCGAGGGCGTCCACGGCGTCTTCCACCTGGCCTCCCCCGTGATACTGCAGCCCGCACAAGACCCCGAGGCAACTTTTCTT
TCTTTCTCCATAATTGCTAAAGCACATCTAGATTAACCATAAGTATTGCACATCTAAGTCCTACTAAGTCATTGATTCGT
GTGGATATTTTTTTTTCCTTTTCTTTTTCTTCTTATGCTTGATTGAGTGATTTAGATGTGCAATAACTAGGGCTAGATGT
GCCAAGCATTGCCGCGCCATAGTTCAGACTTCAGACTTCCATCACTGCAGAGTCTGAATAATATACGCAAGTTAACTGCT
TCTGTGTTCGATCGACGCAGAACGAGCTGCTGCTGCCGGCGGTCAATGGCGCGCTCAACGTCCTCCGCGCCGCCAGAGAC
AGCGGCGTCAAGCGTGTCGTGATGGTGTCTTCGCAGACGGCCATGTGTCCGACGACT---GCCGACTGGCCTGCCGGCAA
GGTCATAGACGACGACTGCTGGGCCGACGTTGAGATCCTCAAGAAACTCGAGGTAC-----AACGTCTGAATTG------
---------TAGATGCT-ACTTTTGGACTTAAGCACTTACGGTCACTTCCTCTGTCTGAATTGCAGCTTTGGTACAACGT
CTCCAAAACGCTGGCGGAGAAGGCGGCGTGGGACTTCGCCGGAGAGGAAGGACTGCAGCTGGTTGTGCTGAATCCAGGGC
TGGTGCTGGGCCCGACGTTGACCCCGGCACCTACTGGCAGTCTCCGTCTGCTGATGCTGCTTCTGGGAGGTCAGTCGATT
ACAAGTTCAACATACAGAGTCTT--GCAGCTCTGTGGCAATTCCTGCACTCCGTCTTCTGCTGCTGAGTTGCAAGTTGCA
ACGCAGAAAAGCTTTATTTCGAGTTTCTAAGAGTGAAGGCTGCAAATTACATTGCCCAGGCCAGAAGCTCGACATGGAAC
CCTTCTTCGTCGGCTGCGTGGACGTCAGAGATGTGGCACAATCTCTGGTGGTGCTCTATGAGAACCCGTCGGCGCAGGGG
CGCCACCTGTGCATGGAGTCCGCCGTACGCCTCGTCGATTTCCACGATGAACTTGCTAACCTTTACCCTGAATTCCCGGT
TCACAGGTGATACATCTACTGACTGGCAACATCGATCGTCTCTCTGTCAGATGCAGTGTTCTAATAATCTTGCTGATTTC
TTCTTTTCACTTCAGGATCCAGGAGGACAAACAGGGCTGGGTGGTGAGGTCGAAGGCTCCGTCCAAGAAATTGATCGATT
TGGGCGTTCGTTTCACCCCATTCGACAAAACTGTCAGGGACACGGTGGATTGCCTAAGGAGCAAAGGAGAAATCTAGCCT
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>chr3B_637
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----------------------------------------------------------------------------GCTG
CAATCTACTGGGCTAGTGGCCAAACTGGGCCAGTCTTGTCCTTACGGCGAACACGATCAACAGCGACCTGAAATAATGGC
GGTCATCGACGCGGGTAG----TTGTGGATTCTTCCCCGGGATAATAATGCAGATAAATTTCAGCATGCGATCGTGTTCT
CTGGCGTCCAAATCCACACATTTGTTGCAGCC-GCGTCACGGGCTGACGGCACGCCTCCCCTCTCGTCGCGTCAACGCCC
CAAACCGCTCTGCTTC-TTTTTAAGGTTGAGAAAGTATGTGCAGTTCACAAGGAGCCAGGGAAGTGCCGAGTTGACCGTC
CGTTTCTGTCCAGTAGGTGAGAGGCAGACGGGCGGATCGTCCCGAGCACCGGCGAGATGGCGTTGGCCGGCGGAGA----
-----TGGTCGCGGCGAGCTCGTCTGCGTGACCGGCGGCAGCGGCTTCATCGGCTCCTGGCTCGTCCGCCTCCTCCTCGA
CCGCGGCTACACCGTCCACGCCACCGTCCAGAACCTCCGTACGTGC----CT-------CTCCTCCTC---CTCTCTCT-
-----GTAACTGAATCGAGTCGACCCAAGATTGTTTGATCGGACTGTTTTTCCAGAGGACGAGGGCGAGACGAAGCACCT
GCAGGCTCTGGATGGCGCGGACACGCGGCTCCGGCTGTTCCAGATGGACCTCCTCGACCCTGCCTCCGTCAGGCCGGCCA
TCCAGGGCGTCCACGGCGTCTTCCACCTGGCCTCCCCTGTGATACTGCAGCCCGCACAAGACCCCGAGGCAACTTTTCTT
TCCATA-----AATAATAACTC----------------------------------------------------------
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------CATTGCCGCGCCATAGTTCACACTTCAGAGTTCCATCACTGCACCGCCTGAATAATATACGCAAGCTAACTGGT
TCTCTGATCGATCGGCGCAGAACGAGCTGCTGCTGCCGGCGGTCAACGGCGCGCTCAACGTCCTCCGCGCAGCCAAAGAC
AGCGGCGTCAAGCGTGTCGTGATGGTGTCTTCGCAGACGGCCATGTGTCC---GACT---GCCGACTGGCCGGCCGACAA
GGTCATAGACGACGACTGCTGGGCCGACGTTGAGATCCTCAAGAAACTCGAGGTACGGTACATCATGTCAACGCTCCCAG
GATCCAGTTTAGATGCT-ACTTTTGGACTTAAGCACTTACGTTCACTTCCTCTGTCTGAATTACAGCTTTGGTACAACGT
CTCCAAAACGCTGGCCGAGAAGGCGGCGTGGGACTTCGCCGGAGAGGAAGGACTGAAGCTGGTTGTGCTGAATCCAGGGC
TGGTGCTGGGCCCGACGTTGACCCCAGCACCTACTGGTAGTCTCCGTCTGCTGATGCTGCTTCTGGGAGGTCAGTCAGTT
G------CAACATACAGAGTCTTTTGCAGCTCTATAGCAATTCCTGCACTCTGACTTCTGCTGCAGAGTTGCAACGCAGA
G------AAATCTTTATTTTGAGTTTCTAAAAGTGAAAACTGCAAACACCATTACCCAGGCCAGAAGCTTGACATGGAAC
CCTTCTTCGTTGGCTGCGTTGACGTCAGAGATGTGGCACAATCTCTGGTGGTGCTCTATGAGAACCCGTCGGCGCAGGGA
CGCCACCTGTGCATGGAGTCCGCCGTACGCCTCGTCGATTTCCACGATGAACTTGCTAATCTTTACCCTGAATTCCCGGT
TCACAGGTGATACATCTGCTGACTGGCAACATTGGTCGTCTGTCCATCAGATGCAGTGTTGTAACGTTT---CTGATTTC
TTCTTTTCACTTCAGGATCCAGGAGGACAAACAGGGCTGGGTGGTGAGATCAAAGGCTCCGTCCAAGAAACTGATCGAGT
TGGGTGTTCGTTTCACCCCATTCGACAAGACTGTCAGGGAGACGGTGGATTGCTTAAGGAGCAAAGGGGAAATCTAGCCT
GCAAACAAATGTACATTTGCAGGAATAAATTCTGCTGGAAAACTGTTCGCCGTGCATAGACATAAAGTGAATAAAGTTGA
GTTGAATTACTATGTGAGGATGTTGTACAATGGCGCTTCACGGGTTTTTACGGTAATCCAAATTGGAGTGATCG-CACTT
GTCTTGGGGTGATATTCGTAATTTTCCTAATAAGGGCACTCGTCCTTGGATTGTCTTAGGAGATTTTAATGAAATTTTAT
GCTCTTTGGAAAAGGTAGGTGGTAAATGCGAGACCTAATGCAATTGTGGAGTTCCGTGATTGTCTCATAGAGCGTGGTTT
GGACGATTTGGGTTTCCCTGGCAATCCTTTTACCTCGAGAAGAGGTGAAATCAAGGAACGACTTGACCAGGCAGTTTGCA
CTTTGGAACGGGCACATAAATTTCTTCGGATTGCCTTTATTAACGAGGAACACGTACACTTTGACCATCGCCCGTTGGTT
CTGGATATGGATTATTTTAGTGATAATATGTTTAGTCGTTCGAAGGGCCGTGTGAAACAGC-------CAGGTGGCTGAA
AGAAGAGACTGTTATTGAAATTGTCAAGTCGTCTTGGTAATTCCTAATCCTAACATCAGAGATGGGCATTTCCAAATATC
TCATTTGGTAACTCTCCCATTTTACATGTGAAAATTTCTGAGTAAATCTGTTGTTTTTCAACAGCCTCCCCAAACAGTAT
GAGTTCACTTTTATGCAAATTTATTTTCAATCCCGACATTTGCTCAAAGGCACCTAGTACAAATTTAAAGTTTTTAGCAC
TTTCAATATCATCTTGTATCAAGAAGATTGTGTCATCAGCATATTGCAGCATATT-------------------------
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--------------------------------------AACTCCTTTATTATTTCCATTTCCAAAAACTCCTTTCACCAA
ATCATTTTCTAAAGCATTTTTCATCAACACAGCCAAAGCATCTACTGCCAAGTCGAACAAAAGGGGTGTCATGACATCCC
TGTCTAAGCCCTTTAAAAGTTCTAAACTATGGACCAATCTTATCATTAACCCTCACTCCTACATGTCCTCCTCTCATTGT
TTCCATCACCCAATCACATCATTTGTTGGGAAATCCTTTTAGTCTTGACATCTGCATGACAAAGGGCCATTTTATTTTGT
CATATGCCTTCTCAAAATCAACTTTAGAAATCATTGAACTCTGCTTCCTAATATTAATTGTGTTTAGAGCCACATGTAAG
ATTACCACCCCTTCCATGATATATCTCTTTTTGATAAATGATGTTTGTGTTCTGGATATCACAGGGGAGACACATTTGGT
CAATCTATTCATTAACACTTTTTTAATAATTTTGAAACTTACATTAAGTAGGCATATTGGTCTAAATTTCTGAATCTGTT
TGTCATCATTTATTTTTGGTACCAAAGCTATGATTCCATAGTTTAATCTAGAGATGTTAGTTTTTCCTTTGGCAAATTCA
ACTAACAATCCCTTCAATTCCCATTTCACAAGGTCCCAAAATTGCTGATAAAAATCAGCTAGGAATCCATCTGGGCGAGG
ACTTTTATTTTTCTTCATCCCAAACACTACATCATACATCTCTTGCAAGTAGAAAGGTTCAACTAAATTCTTTTTCTCTT
CCTCACCAATTTCTGTGAATTGTTGTCCCCTTAGAGAGATTAAGTTCTCCTCGGGGTGTCCAAACAAATTTTTATAGAAG
TTTGTAATGTAGGTCATTAATTTCTCTTCTCCTTCAATCAAGGCGTCTTCTTGTTCTAAAGATATAATTCTATTTTTTTT
CCTCCCATTTACCTTGGCATGGTAATACCTAGTGTTTCCATCTCCATATGTAATCTATTTGTCCTTGTATCTTTGTAACC
ACTTAACTCTTCCTGTTGCAGTATCCTTTTTAGTTGGTCTCTCAGTTCTTTCTGCCCTGTCCTGTCAGCAGCAGATAACC
CCAAAATCTCCACATTTTTATCAATATCATCTAATCTCACAATGATGCTACTCTTGATTTTTTACACCAAGCATCCACAT
TCCTAGTCCGCCCCTTACTCTTTTTTCTAAGGTTTCTCAATCTCCCTTGCCATCTTTCTAAAATGTCCCCTTTATAAGTT
TCATCCCAAGTTTTATAGATTAACTCTTTAAACCCCTCTCTCAGAACCCAAGAATTCTCATATCTGAAGATAGGTTCTCC
TTTGTTATTCTCCCCAGTATCTAGGAACAAAGGCGTATGATCAGAAATTTCACTAGCAAAAACTTGTAGAATAGACAGTG
GATATTTTTCTTCCCAAGCTGGACATTAGTACTTTATCAAGTTTTTCATAAGTAGCGTATTCTAAATTGTTAGCCCAAGT
AAATTTTCTGCCATTAAGTGGCAACTCTCTCAGCCTAGCTTGCTCAATGACTGCATTAAACATAAGCTCCATTGATCAGT
CTGGACAGGTTTGTTCTTTCCTTTTTCATTTCTAATGATATTAAAATATCCTCCCACTAAACATGGGATAGGATTTTCAT
GATATAGTCTAGCCAACTCAGCTAGAAACCCTGCTTCCCATTCTAATTGGGCATCTCCATATATTGTGACCAAATTCCAA
AGCATTTTGATGTTTTTATCAGACACTAAGATCCTCAGAAAGTAGACACATTTTTCAACATGCACAATATCAAACATATC
TTTATTAATTCCAACCAATATTCCCCCAGACATCCCTCTGGGTGGTATCCAATTCCATTCAAANNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATGG
TTTCAGAAATACCAACAAAATCAAGTTTATGATCCATAATCATTTCTCACATAACTTTTCTTATGATCTTTATCTATACC
TCTAACATTCCAGAAAACTCCTTTCATTTTTTCCTATATTTTCTTTGTACTCTCTAGTTTTTATCTATAAGTTGTATAAA
AATCTAGGGAACCAGGGAAGGGTTTTTCTATGTTTATAAGTTCCTTCTCTTCCCTTTCCTCTTCACAACCCCCACACCTA
CCGAGTGTTTCACACAGCTAAGAGCTAGTGAGCACTCAATACCATTTTTCCTATTTGAGAAAATAGCTCCCAATTTTTTA
TATTGATCTTCTTTCATGTCAGTATCGAAGTGCTCCATGTAGAGCATAACTCCTCAATATTGACATCTCGAGTGTTTATA
TGCACTGGTTGTACAAGCCGGCTATTAGGTTGACTCTAGATAACATGTCAAATCCTTATAGCCGATTGTTGGCTACTCTA
AGGATTCGACGCTTGGACTGGGGCAGCATACTGTATACTGTATGCTGCATAGATGGCGCAATCTACTTGGCTAGTGGGAA
AACTTGCCATTATCCTTATAGCGACCTGAAATAATGGTGGTCATCGATGTGGGTGAATGTGAATTCTTCCCCGGGAGAAT
GCCGACAAATTCTTCGGCGTCCAAATCGACAGCAGCTTTCATTGATTGCAGCCGCGTCACTGTCTTACGGCACACCTCCC
CTCTACCACTCTGTTTCTTTCAAGGCCGAGTAGGACTAGAGTGGGCAAGCGGCAGACGTGTGGATCGTACCGACTACCGG
CGAGATGGAGTTGACCGGCGGAGACAGCGGCTGTGCTCGCGGCGGGCTCGTCTGCGTGACCGGCGGCAGCGGTTTCATCG
GCTCCTGGCTCGTCCGCCTCCTCCTCGACCGCGGCTACACCGTCCACGCGACCGTCCAGAACCTCCGTATGTATCAAGCT
ATCCTCCTCTCTCTCTGTGACTGAATCGAGTCGACGCAAGATTGTTTGATCGAATTGCCATTGCAGAGGACGAGGGCGAG
ACGAAGCACCTGCAGGCTCTGGACGGCGCGGACACGCGCCTCCGGCTGTTCCAGATGGACCTCCTCGACCCCGCGTCCGT
CAGGCCGGCGGTCGAGGGCGTCCACGGCGTCTTCCACCTGGCCTCCCCCGTGATACTGCAGCCCGCACGAGACCCCGAGG
CAACTACTTTCTCCATAACAACTCCTTATATTGCCGCCGGATAGTTCAGACTTCAGAGTTCCATCACTGCACAGTCTGAA
TAATATACGCAAGTTAACTTGTTCTGTGCTCCATCGACGCAGAACGAGCTGCTGCTGCCGGCGGTCAACGGCACGCTCAA
CGTCCTCCGCGCCGCCAAAGACAGCGGCATAAAGCGTGTCGTGCTGGTGTCGTCGCAGACGGCCATGTGTCCGAGTCCCG
ACTGGCCTGCCGGCAAGGTCATAGATGAAGACTCCTGGGCCGACGCTGAGATCCTCAAGAAACTTGAGGTGCATCATGTC
AACGCTTGCAGGATCCAGTTTAGATGCTACTCCCTTAGTGATCTAAACGCTCTTATATTTCTCTACGGAGGCTTTTGGAG
TTATGCTGAGTTCCTCTGTCTGAATTTGCAGCTTTGGTACAACGTATCTAAGACGCTGGCAGAGAAGGCTGCGTGGGACT
TCGCCGGAGAGGAAGGACTGCAGCTGGCTGTGCTGAATCCGGCGATGGTGCTTGGCCCAACGTTGACCCCAGCAGCTACT
CCCAGTCTCCGTCTGCTGATGCTGCTTCTGGGAGGTCAGTC
>chr3D_964
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-------------------AGCGGCAGACGTGTGGGTCGTACCGACTACCGGCGAGATGGCCTTGACCGGCGGAGACAGC
GGCTGTGCTCGCGGCGGGCTCGTCTGCGTGACTGGCGCCAGCGGTTTCATCGGCTCCTGGCTCGTCCGCCTCCTCCTCGA
CCGTGGCTACACCGTCCACGCCACCGTCCAGAACCTCCGTACGTATCAAGCT-------ATCCTCCTCTGTGTGTGTGTG
TGTGTGTGACTGAATCGAGTCGACGCAAGATTGTTTGATCGGATTGTCATTGCAGAGTACGAGGGCGAGACGAAGCACCT
GCAGGCTCTGGATGGCGCGGACACGCGGCTCCGGCTGTTCCAGATGGACCTCCTCGACCCCGCGTCCGTCAGGCCGGCGG
TCGAGGGCGTCCACGGCGTCTTCCACCTGGCCTCCCCCGTGACACTGCAGCCCGCACAAGACCCTGAGGCAACTTTTCTT
TGCCCACAG-------TAACTC----------------------------------------------------------
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------CATTGCCGCGGCATACTTCAGACATCAGAGTTCCA---CTGCTCAGCCTG---AATAGATGCAAGTTAACTTGT
TCTGTGATCCATCGACGCAGAACGAGCTGCTGCTGCCGGCGGTCAACGGCACGCTCAACGTCCTCCGCGCCGCCAAAGAC
AGCGGCATAAAGCGTGTCGTGATGGTGTCGTCGCAGACGGCCATGTTTCCG-----------------------------
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--------------------AGGAGGACAAACAGGGCTGGTTGGTGAGATCAAAGGCTCCGTCCAAGAAACTGATCGATC
TGGGTGTTCGTTTCACCCCATTCGACAAAACTGTCAGGGACACAATGGATTGCTTAAGGAGCAAAGGGGAAATCTAGC--
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-----------------------------------------
>SNPs
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S---S-----S-----
-------S---------SS-----------S-----S-------------------S------------S----SS---S
------------------------------------S--------S--S-S------------SSS-SSS----------
--------------------------------------------------------------------------------
---------------------------------------------------S------S--------S------------
-------------------S-----------------------S------------------------------------
---S------------S------S-------------S--S---------------------------------------
--S----------------------------------------------------S------------------------
-------------------------------------------------------------------------------S
--------------------------------------------------------------------------------
---------S------------------------------------------------------S---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------S---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------S----------------------------S--S------
-----S---------------------------------------------------SSS--------------------
------------------------------------------------S-----S--------------------SS--S
------S--SSSSSSSSS----S-S--S---------S-S-S---S-S------------S-------------------
----------------------------------------------------S----------------------S---S
-----S----------------------------------S-------------------------------S-------
--------------------------------S-------------S---------------------------------
----------------------S---------------------------------------------------------
-------------------S------------------------------------------------------------
--------------------S-----------------------------------------------S-----S-----
----------------------S-S------------------S-S-------S--------------------------
----S-------------------------S-------------------------------------------------
-------------------------------------------------------S----S-------------------
S--------------------------------------------S----S----------------S------------
------S-------------------------------------------S---------------------S-S-----
--------------------------S--------S-----S---------S----------------------------
S-----------SSS-S---------------------------SS----------------------------------
----------------------S------------------------------S-S---S---S----S-----------
S-S----SS-------------------------S-------------------------S------SS--SS-------
-----------------SS----S---------------S-----S-------------SSSSSSSSS------S-----
-S-------S---S------------S------S--SS--SSS-S---SSSSSSSSSSSS-S-SS-SSSS--SS-SSSSS
SSSSSSS--SS-S-SSS-SSS--SSSSS-SSSSSSS--SSSSS-SSSSSSSSSSSS-SS--SSSSSSS------------
-----------------------------------------------------------S----------SS-SS-SS-S
SSSSSS-SSSSSS-S-SSSSSS---SSSSSS---SSSSS-SSSSSSS-SSSS-S-SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S--S---SSSSSS-SSSSSSS-SSSS-SSSSSSS
SSS-SSS--SS-SSSSSSSS-SS-SSS-----------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------
>forward_48
----------------------------TGGATGACACGTGGCATTCA--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------
>reverse_1895
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------GCATCATGTCAACGCTTGCA------
--------------------------------------------------------------------------------
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-----------------------------------------
>forward_262
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--TGAATGCCACGTGTCATCCA----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----------------------------------------
>reverse_1968
--------------------------------------------------------------------------------
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-----------------------------------------------CCCTCTGTCTGAACTGCAGC-------------
--------------------------------------------------------------------------------
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-----------------------------------------
>forward_424
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----TCAAATCCTGCCTCCACCAC--------------------------------------------------------
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-----------------------------------------
>reverse_1981
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------CTGCAGCTTTGGTACAACGT
--------------------------------------------------------------------------------
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-----------------------------------------
>forward_465
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------GGCGGAAAACACCACCAATC---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----------------------------------------
>reverse_2340
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------CGACGTCAGAGATGTGGCAC-----------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----------------------------------------
>forward_625
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------ATCTAGTGCCGTCCTTGCAG---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----------------------------------------
>reverse_2469
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------CGAATTTCCGGT
TCACAGGTG-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----------------------------------------
>forward_1916
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------GGTGCATCATGTCAACGCTT----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------
>reverse_2975
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------ATGGGTGGTAATGCGAGACC----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------
