>input_sequence_49355
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ATGGGCTGCGCGTTCTCGTCGTCGCCGTCGCCACG------GAAGCGTGAGCAGCGCGCCCAAGGGTACGAGGAGCCCGC
CGTCCTCGCCGCCGAGACCTCCTGTGCGTGAGCACCCCCATTCCCAGCTCCAGAAGTTTGCCTCTGCCTTTCCTCTGCAA
CCGACTCAACTGAACT---TTGCGTGCAGTCACGGTGAACGAGGTGGAGGCGCTGTACGAGCTCTACAAGAAGCTCAGCT
TCTCCATCTTCAAGGACGGCCTCATCCACAAGGTACGAGCTCTACAAGAAGCTCAGCTTC--------------TCCATC
TTCAAGGACGGCCTCATCCACAAGGTACGAGCTCTACAAGAAGCTCAGCTTCTCCTTACATCCAT--CTCACGAGCTCCA
TGATCATCTTGTCCGATGATCTCGCCCCTGGGTTCTGAACTTGTGGCTG---GTTGTTTCGTTCATGTCAGGAGGAGTTC
CGGCTGGCTCTGTTCAGGACCAGCAGAGGGGCGAACCTGTTCGCGGACAGGGTGTTCGACCTCTTCGATCTCAAGCGCAA
CGGCGTGATCGAGTTCGGCGAGTTCGTGCGCTCGCTCAGCATCTTCCACCCCAAAGCGCCTGAATCTGAAAAGACCGCGT
GTACGCCTCCTGTCCATTGTTCGCTCCTAGTTTGCCGTCCATTCATCTTCTTGTCCTCTCCTCCCTATGAAAC-----CA
ATCAAAAATCTTTCGTTTGTCTCCATCATCGTCCTCCCTGCAGTTGCATTCAAGCTGTACGATCTGCGGGGGACAGGCTA
CATCGAGAAAGAAGAGGCAAGTACTAAATCA--TTTCCGCATCCAACCTAG---CACATGGCGCACTTTATTGTAAT---
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----------------------------------------------------------------GTCGACGCGTTATTTC
TGAATTCTAA--------------AAATTTATATAATCAACACATTGCCTGCACAGCTCCGGGAGATGGTGGTGGCGCTT
CTTGATGAGTCCGACCTATGTCTCTCCGATAGCGCCGTCGAGGAGATTGTCCATAATGTATGTAATCAACAACATTGATA
CTTCCCTCCATGTA----------------------TCGGAGGTATTTTCCCGTTTTCCTTCTTAACA-----TGTTCTG
TGCTGTTCTGCTCCTTTTGGACTGCCAGACGTTCAGTCAAGCAGACTCGGATGGTGATGGCAGGATAGACCCCAAGGAGT
GGGAGGAGTTTGTCAAGCAGAACCCAGCGTCGCTGAGGAACATGTCACTGCCCTATCTCCAGTGAGTACCATCATCTGCT
G--CTCTACTTTCCATTACTGCTCACAGCTGATGTTTCCTTTT------AATTTCTCAGAATCGG-TAGTTCAGCTTCAC
CTGCGATTTCTTAGTTTAATCTTCTTCTGATACAAAAATGCGGCATTTAGATGAGTGCCATCAGTTATGCCATGCTAGAG
AGTAGAGGTCTTTTTAATTTTTAATTTTTTTTGCCCATTCCATTTCACGTGATCTTATTGTTGTTGTGGTTGTTTA--TT
CAGGGACATTACGACGACATTTCCGAGCTTTGTAATGCATTCCGAAGTCGAAGACTACAGTGGAATCAGCAAATAA----
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>chr1A_1_TraesCS1A01G352200
GCATTATTCTGGGCATGGTCAGCGCTACACGAGTCCTGGTACTCCGTGTACCGTGCACCTGGCCAGACGCCCGTCCC---
-CGATCGCCACGTCCACCGGCCCATCCCAC-------GCGCGGGGAAGCGAACCCCATTTTTCTAACCGGCAAAGAAAAG
CGCCTGACGTACGTGACGCCGCCGCCGGCGCTCACGCTGCCGTGCTCCGCCGCGTGCCGCGCCGCGCGCAGCCTACGCGA
CGGGAGCGTGCGCGCGC-----GCGCAGGTGTCGATGTGAAAAACAACGGGAATCAAACCATCTGGAGCAGTAGCAGATA
GTAGTAGAAAGAAAAAGTCCGGCGGGACGCTTCCGCGTTCGCGTGCGAGCTGACGGCGGTG-----ATGCAATTTGGGCG
GCTGCTCAGTACTCGGTAGTTTATTGGCAGAGGACGCAG-AATTCAACGGCCGGAACTGGTTG-----------CCCCAG
TGACGGCGGCCGAATCTTCGCCGG------------AGAGAGGATAGGGCGTGACTGGCGGCGAAATCTGGGGGGACAGC
GACGGCGTACGAAGCCCCCACCCGGCGGTCCACGCGCTCGGCCTCGCGGCCTCGCAGTCGCTGTCGCGCGGCAGCGGGAA
ATAGTGCCACCGTTTGACCT-------CCCGCCCCGCCTCGTTAAATCACGCCCGCCCCCGAGCCC-GAGGAGGAGGAGG
AGTCCAGCGAGGGGACAGACCGGACTGACGCAGACCCGGCAGC------------------------GGAAAGAGGAGAC
AGCCGCGTCCGTCCGTCCGTCCTCGAGGCCCCGGCCGGAGATTTC---------TCCGCCCGTGCCGAGCGTCACCGGAG
CAGAGCCAGCTGTGCGGAGCCGCGGAAGGCCCCGCCGGCGAGGTGGTCTCAGCCTCTCGGGTCAGATTGTGTGTTTCGGT
TTGGTCGATGGTGCT-CCCCTTCCTTCTTGCTGGGCTTTCG-----------GTTGAAGGTCAACG----------CCTG
CCCTGCCTGCAGAGAAGCG------------CGCAGAGCCCCCCGCGGCGCCGGCCGGCCGGCGTAGGAAGGATCCACAG
ATGGGCTGCGCGTTCTCGTCGTCGCCGTCGCCACG------GAAGCGTGAGCAGCGCGCCCAAGGGTACGAGGAGCCCGC
CGTCCTCGCCGCCGAGACCTCCTGTGCGTGAGCACCCCCATTCCCAGCTCCAGAAGTTTGCCTCTGCCTTTCCTCTGCAA
CCGACTCAACTGAACT---TTGCGTGCAGTCACGGTGAACGAGGTGGAGGCGCTGTACGAGCTCTACAAGAAGCTCAGCT
TCTCCATCTTCAAGGACGGCCTCATCCACAAGGTACGAGCTCTACAAGAAGCTCAGCTTC--------------TCCATC
TTCAAGGACGGCCTCATCCACAAGGTACGAGCTCTACAAGAAGCTCAGCTTCTCCTTACATCCAT--CTCACGAGCTCCA
TGATCATCTTGTCCGATGATCTCGCCCCTGGGTTCTGAACTTGTGGCTG---GTTGTTTCGTTCATGTCAGGAGGAGTTC
CGGCTGGCTCTGTTCAGGACCAGCAGAGGGGCGAACCTGTTCGCGGACAGGGTGTTCGACCTCTTCGATCTCAAGCGCAA
CGGCGTGATCGAGTTCGGCGAGTTCGTGCGCTCGCTCAGCATCTTCCACCCCAAAGCGCCTGAATCTGAAAAGACCGCGT
GTACGCCTCCTGTCCATTGTTCGCTCCTAGTTTGCCGTCCATTCATCTTCTTGTCCTCTCCTCCCTATGAAAC-----CA
ATCAAAAATCTTTCGTTTGTCTCCATCATCGTCCTCCCTGCAGTTGCATTCAAGCTGTACGATCTGCGGGGGACAGGCTA
CATCGAGAAAGAAGAGGCAAGTACTAAATCA--TTTCCGCATCCAACCTAG---CACATGGCGCACTTTATTGTAAT---
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----------------------------------------------------------------GTCGACGCGTTATTTC
TGAATTCTAA--------------AAATTTATATAATCAACACATTGCCTGCACAGCTCCGGGAGATGGTGGTGGCGCTT
CTTGATGAGTCCGACCTATGTCTCTCCGATAGCGCCGTCGAGGAGATTGTCCATAATGTATGTAATCAACAACATTGATA
CTTCCCTCCATGTA----------------------TCGGAGGTATTTTCCCGTTTTCCTTCTTAACA-----TGTTCTG
TGCTGTTCTGCTCCTTTTGGACTGCCAGACGTTCAGTCAAGCAGACTCGGATGGTGATGGCAGGATAGACCCCAAGGAGT
GGGAGGAGTTTGTCAAGCAGAACCCAGCGTCGCTGAGGAACATGTCACTGCCCTATCTCCAGTGAGTACCATCATCTGCT
G--CTCTACTTTCCATTACTGCTCACAGCTGATGTTTCCTTTT------AATTTCTCAGAATCGG-TAGTTCAGCTTCAC
CTGCGATTTCTTAGTTTAATCTTCTTCTGATACAAAAATGCGGCATTTAGATGAGTGCCATCAGTTATGCCATGCTAGAG
AGTAGAGGTCTTTTTAATTTTTAATTTTTTTTGCCCATTCCATTTCACGTGATCTTATTGTTGTTGTGGTTGTTTA--TT
CAGGGACATTACGACGACATTTCCGAGCTTTGTAATGCATTCCGAAGTCGAAGACTACAGTGGAATCAGCAAATAAGGCA
CAATTAACACTTATTTTCGGTGTCATATGATCCGTTGGTCCTGAGCTGGGAGGCAGCGCATTCAAGAGTGAGCTGCAGCA
GAAATGTCTGGAACTCAAATAGGAGGACAAGAGATGGAAATCCGGTTGAAGATGACCGACGGTGCGTGAAGTATACTAGC
GGGTAGTGCGCGGCGGCGTGCCGCCGCGCCACATGGACTAATTAGATATTTAGTTTTTTTT-GTAATATTTGGTAAGTTG
ACCCAAGACTTCTTTTGTGGCAAGGTAGTTCATACAAGAACATGCTACATCTAGTTGGTACATAGGTAGGAAATTGTGAC
AAAGTATTTCATACAAGAAA----TCCATCTAGTTGGTACATACATTTGAGATTTACGACACATAGTAATATAGTAGATA
TTGGACGCAAAATTGAGAAGCTCTAGCTCTCTTCTTAGAACTAAGATGTTGATCGTCCGGCTGGGTTTGGGTGATGGGGC
TGGGAGGCCGGGAGTGCGAGATTCAGGGGACTCATGATAATGAGGCCTTTTATGAGTGATACTTGGCGCAGAATTGGGAA
GCTCTTGTTC-TCTTCTTAGAACTGAGATGTTGATGGTCCGGCTGGGTTTGGGTGATGGGGCTGGAAGGCCGGGAGTGTG
AGATTCGGGGGAATCATGATAGGGAAGCCTTATATGATTTATTTAGCGGCAAAGCGGCGCACGATCTGATACAATCTGAC
GGGATCCTTCGAGAAAGACAAATCTAGAAAACACCATGCAAAATATCTGAAAATCATCACCGTCTAGAAGGCCAGGCTAA
AGCAGCAACTGACATGAAAGTATAAATGTTTTTGGAGGAAAGGTAACTGTAAGCAATACATTTGGCCACAACTTACATTT
TTAGAGAAAAGGTGATGGACCTTGCTTATATTATAACCATTTCACCAAGTTCCTTGTGTCTCAGCAATAGCTAAGTACAC
AAATCTGAAACAGATACTGGAAAACCAGATTGCCTGATGAGT
>chr1B_1
GCATTATTTTGGGCATTGTCAGCGCTACAGGAGTCATG-TACGGCGTGGACCGTGCACCTGCAGTATCCACACGCCCGCC
TCGATCGCCACGTCCACCGGCCCATCCCACCCGCGCCGCGCGGGGAAGCGAACCCCATTTTTTTAACCGGAAAAGAAAAG
CGCCTGACGTGCGTGACGCTGCAGCCGGCGTGCACGC-GCCGTGCTCCTCCGCGTGCCGCGGCGCGCGCAGCCTATCGGA
GGGGAGCGTGTGTGCGTGCGCAGCGCAGGTGTCGATGT--AAAACAACGGGAAGCAAACCATCTGGAGCAGTAGCAGTAG
ATG---GAAAGAAAAGGTCTGGCGGGACGCT------TTCGCGTGCGAGCTGACGGCGGCGATGCAATGCAATTTGGGAG
GCTGCTCAGTA-------GTTTATTGGTCGAGGACGCAGAAATTCAACGGGCGGAACTGGTTGGAGACAGCGAACCCCAG
TGACGGCGGCTGAATCTTCGCCGGGGTCGCTACCGGAGAAAGGATAGG--GTGACTGGCGGCGAAATCTGGGGAGACAGC
GACGGCGTACGGACA---CCCCCGGCGGTCCACGCGCTCCGCCTCGCAGCCTCGCACTCGCTGTCGCACGGCAGCGGGAA
ATA---CCACCATTTGACCT-------GGCGCCCCGCCCCGTTAAATCACGCCCGC------------------------
---CCAGCAAGGGGACAGACCAGACGGACGCAGACCCATCACCAGCAGCGGCAAGGCCAGACGGACAGGAGAGAGGAGAC
GGCCGT-----------TGTCCTCAAGGCGTCGGCGCCGGCGCCGGCTGGAGATTCCGCGCGTGACAACCATCACGAGAG
CGGCGCC---------------------------CCGGCGAGGTATATCTCAT-TCTCAGGTCAGATTGTGT-TTTCCGT
TTGACGACCATCCGGC------CCTTGTTGCTGGGCTGTTGCCGGACGGGAAGTTGAAGGTCAACG----------CCTG
CCCTGCC------GTAGCT------------TGCAGAGCCTCTCGCGGCGCCGGGCCGGCGCAGGATCGACC----ATCG
ATGGGCTGCGCGTGGTCGTCGTCGCCGTCGCCGT------CGAGGCGTGAGCAGCGCGCGCAGGGGTACGAGGAGCCGGC
CGTCCTCGCCACCGAGACCTCCTGTACGCGACCGCCCCTGCCTCCAGCTAATTGTCGATACCTTTGCCTTTGCTCTGTAA
TAATAACTGACTGAAGCTGTTGCGTGCAGTCACGGTGAACGAGGTGGAGGCGCTGTACGAGCTCTACAAGAAGCTCAGCT
TCTCCATCTTCAAGGACGGCCTCATCCACAAGGTGATTGAAGTCCTA----------CCATTA-----------------
-----------------------------------------------------CCATACATCGATCTCAACTGCGT----
-------------------------------CCTCTGAATTTCTGGTCG---G----TTGGTTCATGTCAGGAGGAGTTC
CGGCTGGCCCTGTTCAGGACCAGCAAAGGGGCGAACCTCTTCGCGGACAGGGTGTTCGACCTCTTCGATCAGAAGCGCAA
CGGGGTCATCGAGTTCGGCGAGTTCGTGCGCTCGCTCAGCATCTTCCACCCCAAAGCGCCTGAATCTGAAAAGACCGCCT
GTACGCCTCCTGTCCATTACTCGCTCCTAATTTGCAGCCCATTCATCTTCTTGTCCTC-----CCTATGAAAC-----CA
ATCAAAA-TCTTTTGTTTGTCTCCATCATCGTCCTCTTTGCAGTTGCATTCAAGCTGTACGATCTGAGGGGGACAGGCTA
CATCGAGAAAGAAGAGGTAAATACTTAAATCATTTTCT-CATCCAACCTAG---TACATGGTGCCCTTTATTGTAACTAG
GGGTGGACGCGGTCCGGGCCGGTCCGGTCCCTGACCGAGCCCTGCTTTGGACCGGCCGCGGCCGGTCCGGTCCGGACCGG
ACCGAAGTGGCTGGCGGTTCATATTTTCAGGACCGGACCGGCTGCAGCAAAGCTCGGTCAAGACCGAGAGGACCGACTGG
ACCGACCGAATTTGTATCCTGGGAGTGCGCTGGGAGGATTTTTGGCTCTGTTTAGCCACTGTTTAGTCATCCTTTTATAT
TTTGTAAAGCAAATGGACCAAGAATACAGCATATATGAGACTAATTTTGAACATTTAGAATGCTTGTTTCAAAAGAGGAT
GGAATCGACAATAAATAAGCAAGTTATGCTATAGATTTACCATGACAAGCTGAAGAATGGATGAAAGATGATGTAAGAAA
ATTTTGGAATTCAGTACTAACTGCTAACAATGGTGTATTCAACACTCAATAGATCAGTACGAACTGCTAACAATTCAGTA
CTAATTGTTGAAAATTTTGGCACTGAATACCTCGGTCAGAGATGGGATAATGCAGAGGAGAGGACAGAGGAGATCGAACA
GGTGCAGGGGAGACGGCGTGCAGGTGCAGGCACATCCTCCCCCTCCTCCAGCTTCGTGGTCATCTCTTATCGACAGCAGC
GAGCCGGCGAGGAGGTGGTCGACGGCGGACAGGTGGAGACGGCGGCGGTCGACCCTCAACTCGACGGCAGGCAGCTGCAC
GCGCTGCGCTCCCTCCTCTTCTCCTCTTTCCCTCCAGTACTGCGGCTTCGTGGTCTACGGCGAGGTGGTTGACGACGGCA
GCACCAGGAGGTGGTCGACGACGGAAGCCGGCGGAGGCGGCGCTCGACCGCTCGGGGTCGGGGGAGGGGAATGGACGGGG
TTGCGTACTTGAACTCTCTGCTTTGCCTTTATTGCCGTCTGCGCTAGGCTCTATATGGTTTTTTTTTTGACGCACTGGGC
TCTATATGGGTTGCTGTGGGCTGTGGCCTGTGAGCTGGGCTAAATGTCGCGGTCTGAACGAGCGGACCGAGCTTTGACCG
GACCGGACCGAGAAAATTTCGGTCCATTTTCTAGGGACCGGACCGATGACTTTTTTCAGCGGGCCTGGACCGAGCCTGCC
TGCACCGAGCGGGCCGCGAGCCGGACCGAAGGACCGGACCGTTTCGTCCACCCTGAATTGTAACGTCGAC------TTTC
TGAATTCTAA--------------ACT----TATAATCAACACATTGCCTGCACAGCTCCGGGAGATGGTGGTGGCACTT
CTTGATGAGTCCGACCTATGTCTCTCGGCCAGCGCCGTGGAGGAGATCGTCGATAATGTATGTAATCAACAAGATATATT
CAGGTTCCCTAAAAAAAACAAGATATATTCAGTCATTCGGAACTATTTTCCTGTTTTCCTTCT-AACATGTTCTGTTCTG
TGCTGCTCTGCTCCTTTTGGACTTTCAGACGTTCAGTCAAGCAGACTCGGATGGTGATGGCAGGATAGACCCCAAGGAGT
GGGAGGAGTTTGTCAGGAAGAACCCGGCATCACTCAGGAACATGTCACTGCCCTATCTCCAGTGAGTAC-----------
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>chr1D_242
CGG-----------------------------------------------------------------------------
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---------------GC-----GCGCAGGTGTCGATGTAAAAAACAACGGGAATCGAACCATCTGGAGTAG---------
-------AAAGAAAAAGTCTGGCGGGAGGGT------TTCGCGTGCGAGCTGACGGCGGCG-----ATGCAATTTGGGCG
GCTGCTC----------AGTTTATTGGTAGAGGACGCAG-AATTCAACGGCCGGAACCAGTTG-----------CCCCAG
TAACGGCGGCTGAATCTTCGCCGG------------AGAAAGGATAAG--GTGACTGGCGGCGAAATCTGGGGAGACAGC
GACGGCGTACGGAG--CCCCCCCGGCGGTCCACGCGCTCGGCCTCGCAGCCTCGCGCGCGCTGTCGCACGGCAGCGGGAA
GTA---CCATTTGACCTCGCGCCCCGCCCCGCCCCGCCCCGTTAAATCACGCCCGCCCCCGAGCCC-GAGGAGGAGGAG-
--TCCAGCAAGGGGACAGACAAGACGGACGCAGACCCACCACCAGCAGCGGAAAGGCCAGACGGACAGGAGAGAGGAGAC
GGCCGTT-------GTCTGTCCTCGAGGCGCCGGCGCCGGCGCCGGCTGGAGATTCCGCGCGTGACGACCATCACGAGAG
CGGAGCC---------------------------CCGGCGAGGTGTATCTCAT-TCTCAGGTCAGATTGTGT-TTTCGGT
TTGGTGGCGACGTGCC------CCTTCTTGCTGGGTTGCTGCCGGACGGGAGGCTGAAGGTCAACG----------CCTG
CCCTGCC------GTACCTGCAGCTGCAGAGTGCAGAGCCTCTCGCGGCGTAGGATCGAG----------CC----ATCG
ATGGGCTGCGCGTGGTCGTCGTCGCCGTCGCCGTCGCCGTCGAAGCGCGAGCAGCGCGCCCAGGGGTACGAGGAGCCGGC
CGTCCTCGCCGCCGAGACCTCCTGTGCGTGAGCACCCCCATTCCCAGCTCCAGAAGTTTGCCTTTGCCTTTCCTCCGTAA
CCGACTCAACTGAACT---TTGCGTGCAGTCACGGTGAACGAGGTGGAGGCGCTGTACGAGCTCTACAAGAAGCTCAGCT
ACTCCATCTTCAAGGACGGCCTCATCCACAAGGTAGTTGAGGTCCTC----------CCCACAACCGCCATGGATCCATC
TTCAAAGACTGCGTGCTCTCGTCTCATCCGC-------------------------------------------------
-----------------------------------------------------TTGCTTGGTTCATGTCAGGAGGAGTTC
CGGCTGGCGCTGTTCAGGACCAGCAAAGGGGCGAACCTCTTCGCGGACAGGGTGTTCGACCTCTTCGATCTCAAGCGCAA
CGGGGTCATCGAGTTCGGCGAGTTCGTGCGCTCGCTCAGCATCTTCCACCCCAAAGCGCCTGAATCTGAAAAGACCGCAT
GTACGCCTCCTGTCCATTGCTCGCTCTTACTTTGCTGTCCATTCATCTTCTTGTCCTC-----CCTGTGAAAC-----CA
ATCAAAAATCTTTCGTTTGTCTCCATCATCGTCCTCTTTGCAGTTGCATTCAAGCTGTACGACCTGAGGGGGACAGGCTA
CATCGAGAAAGAAGAGGCAAGTACTAAATCA--TTTCT-CATCCAACCTAG---TACATGGTGCACTTTATTGTAAGGTA
C-------------------------------------------------------------------------------
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------------------------------------------------------------TAACGTCGACGCGTTGTTTC
TGAATTCTAA--------------ATT----TATAATCAACACATTGCCTGCACAGCTCCGGGAGATGGTGGTGGCGCTT
CTTGATGAGTCCGACCTATGTCTCTCTGACAGCGCCGTCGAGGAGATCGTCGACAATGTATGTAATCAACAAGATATAT-
----------------------------TCAGTCATTGGGAACTATTTCCCTGTTTTCCTTCT-AACA-----TGTTCTG
TGCTGCTCTGCTCCTTTTGGACTTTCAGACGTTCAGTCAAGCAGACTCGGATGGCGACGGCAGGATAGACCCCAAGGAGT
GGCAGGAGTTCGTCAAGAAGAACCCAGCATCGCTGAGGAACATGTCGCTGCCCTATCTCCAGTGAGTGCTCTCGTCTGCT
GTTCTCTACTCTTCCTTACTGCTCGCGGCTGATAGTTCCTTTAGTTTTCAATTTCTCAAGCATTGTTAGTTCAGCTTCTC
CTAGGCTTTCTTAGTTTAGTCTCCAAATAATACGCGAACGCCATATTTAGATGAGTGGCAGCAGTTGTGCTATGCTAGAG
AGTAAAGAGC--------TTTTGATGTTTTTTCT-CATTACATTTGACGCGATTTTATCGTTGTTGTGGTTGATGTTGTT
CAGGGACATTACGACGACGTTCCCGAGCTTTGTAATGCATTCGGAAGTTGAAGATTACACTGGAGTCAGCAAATAA----
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>chr4D_641
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----------------------------------------------------CCGCCCCCGCCCGAGGAGGAGGAGGAG-
--TCCAGCAAGGGGACATACCAGACAGACGCAGACCCGGCAGC------------------------GAAAAGAGGAGAC
AGCCGT----GTCCGTCCGTCCTCAAGGCGCCGGCCGGAGATTTC---------TCCGCCCATGCCAAGGGTCACCAGAG
CAGAGCTAGCTGTATAGAG------------CCGCCGGCGAGGTGA--------TCTCAGGTTAGCTTGTGT-TTTCGGT
TTGGTCGATGGTGCT-CCCCTTC----TTGCTAGGCTTCTG-----------ATTGAAGGTCAATGCCTGCCTTGCCCTG
CCCTGCCTGCAGAGAAGCG------------CGCAGAGCCCCTCGCGGCGCCGGCCGGCCAGCGTAGGAAGGATCGATGG
ATGGGCTGCGCTTTCTTGTCGTCGTCGTCGCCACG------GAAGCGTGAGCAGCGCGCTCAGGGATACGAGGAGTCGGC
CGTCCTTGCCGCCGAGACCTCCTGTGCGTGAGCACCCCCGTTTCCAGCTCTAGAAGTTTGCCTCTGCCTTTCCTCTGTAA
CTGACTCGACTGAACT---TTGCGTGCAGTCACAGTGAACAAGGTGGAGGCGCTGTACGAGCTCTACAAGAAGCTCAGCT
TCTCCATCTTCAAGGACGGCCTCATCCACAAGGTAATTCTTAAGGTCCTACCATTGTCCATTG-----------------
-----------------------------------------------------CCTTACATCAAT--CAACTGCGT----
-------------------------------GCTTTGAATTTGTGGCTGGTTGTTGTTTCATTCATGTCAGCAGGAGTTC
CGGCTGGCCCTGTTCAGGACCAGCAAAGGCGCGAACCTATTCGTGGACAGGGTGTTCGACCTCTTCGATCTCAAGCGCAA
TAGGGTCATCGAGTTTGGCGAGTTCATGCGCTCGCTCAGCATCTTCCACCCCAAAGCGCCTGAATCTAAAAATACTGCGT
GTACGCTTCCTGTCCATTGCTCGCTCTTACTTCGTCGTCCATTCATCTTCTTGTC---TCCTCCCTATGAAAGGAAATCA
GTCAGCA-TCGCTTCTCTGTCTC---CATCCTTTTCTTTGCAGTCGCATTCAAGCTGTATGATCTAAGGGGGACAGGCTA
CATCAAGAAAGAAGAGGCAAGTACTA------------------------------------------------------
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>chr4A_849
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------------------------------------------------------TCTCAGGTCAGATTGTGT-TTTTGGT
TTGGTCGATGGTGTTCCCCCTTC----TTGATGGGCTTTTG-----------ATTGAAGGTCAATGCCTACCTTGCCTTG
CCCTGCCGGTAGAGAAGCG------------CACAGAGCCCCTTGCGGCACCAGCCGGCCGGCGTAGGAAGGATCGACAG
ATGA-CTGCGCCTTCTCGTCGTCGCCGTCTCCACG------GAAGCGTGAGCAGCACGCTCAGGGGTATGAGGAGCCGGC
CGTCCTTGCTGCCAAGACCTCCTATGCGTGAGCACCCCTGTTCCCAGCTCCAGAAGTTTTCCTTTGCCTTTCCTCTGTAA
CTGACTTGACTGAACT---TTGCGTGCAGTCATGGTGAACGAGGTGGAGGAGCTGTACGAGCTCTACAAGAAGCTCAGCT
TCTCCATCTTCAAGGACGACCTCATCCACAAGGTAATTCTTAAGCTTCTAGCATTGTCCATTG-----------------
-----------------------------------------------------CCTTACATCGAT--CAACTGCAT----
-------------------------------GCTCTGAATTTGTGGCTGGTTGTTGTTTCATTGATTTCAGGAGGAGTTC
CGGCTAGCCCTGTTTAGGACCAGCAAAGGCGTGAACCTATTCGCGGACAGGTTGTTCGACCTCTTCGATCTCAAGTGCAA
CGGGGTGATCGAGTTCGGTGAGTTCGTGCGCTCGCTCAGCATCTTCCACCCCAAAGCGCTTGA-----------CTGCAT
GTACGCCTCCTGTCCATTGCTCGCTCTTACTTCGCCGTCCATTCATCTTCTTGTCCTCTCCTCCCTATGAAATGAAATCA
GTCAGCA-TCGCTTCTCTGTCTC---CATCCTTCTCTTTGCAGTCGCATTCAAGCTGTATGATCTGAGGGGGACAGGCTA
CATCGAGAAACAAGAGGCAAGTACTA------------------------------------------------------
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>chr7B_1434
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-------------------------------------------------------------TTCATGTCAGGAGGAGTTC
CGTCTGGCCCTGTTCAGGACCAGCAAAGGGGCGAACCTGTTCGCGGATAGGGTGTTCGACCTCTTCGATCTCAAGCGCAA
CGGGGTCATCGAGTTCGGCGAGTTCGTGCGTTCGCTCAGCATCTTCCACCCCAAAGCACCTGAATCCGAAAAGACCGTGT
GTATGCATCCTATTCCTGCCATGTG----------------------TTCTTGTCCTCTCCCCCCTATGAAAGGAGATCA
GTCAGCA-TCGCTTCTTTCTCTC---CATCCTTCTCCTTGCAGTTGCATTCAAGATGTATGATCCGAGGGGGACAAGCTA
CATCGAGAAAGAAGAGGCAAGTACTAAATCA--TTTTCCCATCCAACCTAGTGCTACATGATGCACATTGTTGTAAC---
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----------------------------------------------------------------ATCTATGAGTTATTCT
AATCAAGTGGAAATTTTTAGTAGTACT----ACTAATTAACACATTGACTACACAACTTCGGGAGATGGTGGTGGCGCTT
CTTGATGAGTCCGACCTATGTCTCTCGGATAGCGCCGTCGAGGAGATCGTTGATATTGTATGTAATCAAC----------
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>chr3B_2673
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---------------------------------------------------------------------AGTATACTAGC
GGATAGTGCGCGGCAGCA---CGCCGCGCCACATGGACTAATTAGATATTTAGTTTTTTTTTGTAATATTTGGTAAGTTG
ACCCAAGACTTCTTTTGTGGCAAGGTAGTTCATACAAGAACATGCTACATCTAGTTGGTACATAGGTAGGAAATTGTGAC
AAAGTATTTCATACAAGAAA----TTCATCTAGTTGGTACATACATTTGAGATTTACGACACATAGTAATATAGTAGATA
TTGGGCGCAAAATTGAGAAGCTCTTGCTCTCTTCTTAGAACTTAGATGTTGATCGTCCGGCTGGGTTTGGGTGATGGGGC
TGGGAGGCCGGGAGTGCGAGATTCAGGGGATTCATGATAATGAGGCCTTTTATGAGTGATACTTGGCGCAGAATTGGGAA
GCTCTTGTTC-TCTTCTTAGAACTGAGATGTTGATGGTCCGACTGGATTCGGGTGAAGGGGCTGGAAGGCCGGGAGTGTG
GGATTCGGGGGAATCATGATAGGGAAGCCTTATATGATTTATTTAACGGCAAAGCGGCGCACGATCTGATACAATCTGAC
GGGATCCTTCGAGAAAGACAAATCTAGAAAACACCATGCAAAATATCTGAAAATCATCACCGTCTAGAAGGCCAGGCTAA
AGCAGCAACTGACATGAAAGTATAAATGTTTTTGGAGGAAAGGTAACTGTAAGCAATACATTTGGCCACAACTTACATTT
TTGGAGAAAAGGTGATGGACCTTGCTTATATTATAACCATTTCACCAAGTTCCTTGTGTCTCAGCAATAGCTAAGTACAC
AATTCTGAAACAGATAGTGGAAAACCAGATTGCCTGATGAGT
>chr3B_2675
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-----------------------------------------------------------------------TATACTAGC
GGGTAGTGCGCGGCGGCA---CGCCGCGCCACATGGACTAATTAGATATTTAGTTTTTTT-TGTAATATTTGGTAAGTTG
ACCCAAGACTTCTTTTGTGGCAAGGTAGTTCATACAAGAACATGCTACATCTAGTTGGTACATAGGTAGGAAATTGTGAC
AAAGTATTTCATACAAGAAA----TCCATCTAGTTGGTACATACATTTGAGGTTTACGACACATAGTAATATAGTAGACA
TTGGACGCAAAATTGAGAAGCTCTTGCTCTCTTCTTAGAACTTAGATGTTGATCGTCCGACTGGGTTTGGGTGATGGGGC
TGGGAGGCCGGGAGTGCGAGATTCAGGGGACTCATGATAATGAGGCCTTTCATGAGTGATACTTGGCGCAGAATTGGGAA
GCTCTTGTTC-TCTTCTTAGAACTGAGATGTTGATGGTCGGGCTGGGTTTGGGTAATGGGGCTGGAAGGCCGGGAGTGTG
AGATTCGGAGGAATCATGATAGGGAAGCCTTATATGATTTATTTAGCGGCAAAGCGGCGCACGATCTGATACAATCTGAC
GGGATCCTTCGAGAAAGACAAATCTAGAAAACACCATGCAAAATATCTGAAAATCATCACCGTCTAGAAGGCCAGGCTAA
AGCAGCAACTGACATGAAAGTATAAATGTTTTTGGAGGAAAGGTAACTGTAAGCAATACATTTGGCCACAACTTACATTT
TTGGAGAAAAGGTGATGGACCTTGCTTATATTATAACCATTTCACCAAGTTCCTTGTGTCTCAGCAATAGCTAAGTACAC
AAATCTGAAACAGATA-TGGAAAACCAGATTGCCTGATGAGT
>chr7A_2676
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------------------------------------------------------------------------ATACTAGC
GGGTAGTGCGCGGCGGCA---CGCCGCGCCACATGGACTAATTAGATATTTAGTTTTTTT-TGTAATATTTGGTAAGTTG
ACCCAAGACTTCTTTTGTGGCTAGGTAGTTCATACAAGAACATGCTACATCTAGTTGGTACATAGGTAGGAAATTGTGAC
AAAGTATTTCATACAAGAAA----TCCATCTAGTTGGTACATACATTTGAGATTTACGACACATAGTAATATAGTAGATA
TTGGACGCAAAATTGAGAAGCTCTAGCTCTCTTCTTAGAACTAAGATGTTGATCGTCCGGCTGGGTTTCGATGATGGGGC
TGGGAGGTCGGTAGTGCGAGATTCAGGGGACTCATGATAATGAGGCCTTTTATGAGTGATACTTGGCGCAGAATTGGGAA
GCTCTTGTTC-TCTTCTTAGAACTGAGATGTTGATGGTCCGGCTGGGTTTGGGTGATGGGGCTGGAAGGCCGGGAGTGTG
AGATTCGGGGGAATCATGATAGGGAAGCCTTATATGATTTATTTAGCGGCAAAGCGGCGCACGATCTGATACAATCTGAC
GGGATCCTTCGAGAAAGACAAATCTAGAAAACACCATGCAAAATATCTGAAAATCATCACCGTCTAGAAGGCCAGGCTAA
AGCAGCAACTGACATGAAAGTATAAATGTTTTTGGAGGAAAGGTAACTGTAAGCAATACATTTGGCCACAACTTACATTT
TTGGAGAAAAGGTGATGGACCTTGCTTATATTATAACCATTTCACCAAGTTCCTTGTGTCGCAGCAATAGCTAAGTACAC
AAATCTGAAACAGATACTGGAAAACCAGATTGCCTGATGAGT
>chr2B_2676
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------------------------------------------------------------------------ATATTAGC
GAGTAGTGCGCGGCGGCAT---GCCGCGCCACATGGACTAATTAGATATTTAGTTTTTTT--GTACTACTTGGTAAGTTG
ACCCAAGACTTCTTTTGTGGCAAGGTATTTCATACAAGAACATGCTACATCTAGTTGGTACATAGGTAGGAAATTGTGAC
AGAGTATTTCATATAGGAAAACGGTTCATCTAGTTGGTA-ATACATTTGAGATTTACGACACATAGTAATATAGTAGATA
TTGGGCACAAAATTGAGAAGCTCTTGCTCTCTTCTTAGAACTGAGATTTGGGTCGTCCGGCTGGGTTTGGGTGATGGGGT
TGGGAGGCCGGGAGTGCGAGATTCAGGGGACTCATGATAATTAGGCCATTTATGAGTGATACTGGGCGCAGAATTAGGAA
GCTCTTGTTCCTCTTCTTAGAACTGAGATGTTGATCGTCCGACTGGGTTTGGGTGATGGGGCTGGAAGGCCGGGAGTGTG
AGATTCGGGGGACACACGATAGGGAAGCCTTATATGATTTATTTAGTGGCAACGCGATGCACGATATGATACAATCTGAC
GGGATCCTTCGAGAGAGGCAAATCTAGAAAAAACCATGCAAAATATCT---AATCATCACCGTCTAGAAGGCACGGCTAA
AGCAGCAACTGACATGAAATTATAAATGTTTTTGGAGGAAAGCTAACTGTAAGCAATACATTTGGCCATAGCTTCCATTT
TTGGAGAAAAATTGATGGACCTTGCGTATATTATAACCATTTCACCAAGTTCCTTGTGTCTCAGCAATAGCTAAGTACAC
AAATCTGAAATGGATAGTGGAAAACCAGATTTCCTGACGAG-
>chr4B_2677
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-------------------------------------------------------------------------TACTAGC
GGGTAGTGCGCGGCGGCA---CGCCGCGCCACATGGACTAATTAGATATTTAGTTTTTTT-TGTAATATTTGGTAAGTTG
ACCCAAGACTTCTTTTGTGGCAAGGTAGTTCATACAAGAACATGCTACATCTAGTTGGTACATAGGTAGGAAATTGTGAC
AAAGTATTTCATACAAGAAA----TCCATCTAGTTGGTACATACATTTGAGATTTACGACACATAGTAATATAGTAGATA
TTGGACGCAAAATTGAGAAGCTCTAGCTCTCTTCTTAGAACTAAGATGTTGATCGTCCGGCTGGGTTTGGGTGATGGGGC
TGGGAGGCCGGGAGTGCGAGATTCATGGGACTCATGATAATGAGGCCTTTTATGAGTGATACTTGGCGCAGAATTGGGAA
GCTCTTGTTC-TCTTCTTAGAACTGAGATGTTGATGGTCCGGCTAGGTTTGGGTGATGGGGCTGGAAGGCCGGGAGTGTG
AGATTCGGGGGAATCATGATAGGGAAGCCTTATATGATTTATTTAGGGGCAAAGCGGCACACGATCTGATACAATCTGAC
GGGATCCTTCGAGAAAGACAAATCTAGAAAACACCATGCAAAATATCTGAAAATCATCACCGTCTAGAAGGCCAGGCTAA
AGCAGCAACTGACATGAAAGTATAAATGTTTTTGGAGGAAAGGTAACTGTAAGCAATACATTTGGCCACAACTTACATTT
TTGGAGAAAAGGTGATGGACCTTGCTTATATTATAACCATTTCACCAAGTTCCTTGTGTCTCAGCAATAGCTAAGTACAC
AAATCTGAAACAGATACTGGAAAACCAGATTGCCTGATGAGT
>SNPs
--------S-------S------------S-----S--S---SS----S------------SSSSSS-SS-SSS------
--------------------------------------------------------------S-------S---------
----------S--------S--S-------SS-----S----------S------------S-------------SSS--
S---------S-S-------------------------S--------------------------------------SSS
S-SSSS-------------S-----------SSSSSS----------------------S--------------------
-----------SSSSSS----------S----------------------------------------------------
----------S----------------------------S--------SS-----------------------S------
-----------S--SS---S---------------------------S--------S----------S------------
---SSS-----S--------------------------S----------------------------------------S
SS------S------------S---S------------------------------------------------------
-----SSSSS-------------------S----------------------------------------------S---
-------------SSS---SSSSSSSSSSSS--------------SSSSSSSSS----S-------------S-------
---------------------------------------S----------------------------------------
------------------------------------------S--------------------------------S----
--------------------------------------------------------------S--------------S--
-----------------------------------------------------------------------------S--
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-----------------------------------SSS-S-S-S-S-SS---SSS-SSS---------------------
-----S---S--S-SS--SSSSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSS---------S-----SSSS-S-SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-S------S----------------------------------------
--------S----------------S------------------------------------------------------
---S----------------------------------------------------------------------------
-------------------S---------S--------------------------------------------------
-------------------------------------S----------------------------S-------------
--------------------------------------S---------------S------S--------------S---
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-------------------------SSSSSS-------------------------------------------------
--------------------------S--------------------S---S--------------------S--SS--S
-SSSSSS--SSSS----------------------------SS--------S-----------S----------------
-----S-----------------SS-------------------------------------------------------
-----------------S----------S----------------------------------------SS--S------
----------S-S-S---------S-S------SS-------S---------------SSSSSS--------------S-
--SS-S------------S---S-SSS-S----SSS--S--SSS-------------S--S-----S---S---------
----S--SS-SSSSSSSS----S--S------SSS----S-----S---S---S----S-------------S-SS----
------------------S--S--------------------S-----S-----S----S----S-----------SSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------
-----------------S-SS-----------------------------------------------------------
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--S-----------------------------------------------------------------------------
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>forward_49
-----------------------------CGAGTCCTGGTACTCCGTGT-------------------------------
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>reverse_1780
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-------------------TTCGCTCCTAGTTTGCCGTC-----------------------------------------
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>forward_1456
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----------------------------------------------------------------------------CATC
TTCAAGGACGGCCTCA----------------------------------------------------------------
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>reverse_3975
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------------------------------------------------------AGCGCATTCAAGAGTGAGCT------
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