>input_sequence_49308
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------------------------------------------------------------------------------AT
GGCCGATTTGACAGGAAGGAGCATGGAACCACCAGCTGCTGCATGGCCACCCTGCGGCTTTCCGGCCAACTGGTCCTTGG
AACCTGTGTGGGCTCCTGGCTTCCCCGTCGAGTCTGCAGTGTGGTTCCAGACACATGCTTCTAGCAGCTCTAGCGAAGAG
CAGCTGCAACAGCTTCAGTATGGGGCAGCGACAACACCAAATTTAGCTATCC----------------------------
--AGGAAGAAGAAGAAGCACAATACAAGATGGAAATGGAGATCCACGACCCGATCCAAGTATTCGCGGAAGCAGCACACG
AGTTCAAGGTCGACATCAACATGAGGGACATGAAGATCCACAAGTACCCTGCAAGCATTCAACGTCTCGGCGGCTACTAC
ACAACCCCGACGACGGTGGCCATCGGGCCTTACCACCACGGGAGGGACCGCCTCAAGCCGGCGGAGAAGGTGAAGCACGT
GGCCGCCTACCACTGCATCATGGAATCGGGCCGCTCCGTCCAAGAGATGTACGCCGCGGTGGCCTCGGTCGCCGGCGAGA
TCCGAGGGCTCTACGACAAGGACATGGTGGCAGGTATCGGCGACGATGAGTTCCTGCCCATGATGTTCTATGATGCGTGC
TTCCTCGTGCAATACATGCTCACATGCACCAGTGGTGGCTCCGAGATGGATCCGTCACTGCGCAGCTACTTCGACGGAAA
CGATAGCGACATCTTCCACGACATCCTGCTGCTCGAGAACCAACTCCCATGGCGAGTGGTCAAGACCGTCATGGGGTTCA
GGCCGGTTCCCTTGGAGGAGTTCATCACTTACTTGAAAGATGGCCTGCAAGACCGCAAATTAACCGAGAAGAAGTCTCCG
GCATTGGACGATAGCTACGAGCCGCCGCACCTCCTCGGCCTTCTCCGATTCTACATTGTAGGGAGAAGCAACATCAAGCG
CACCCGCCTACCCCAAACCGAGTCCATGTCGTTCTCTGTGAGCGC-----------------------------------
-----------CATCGAGCTAGCGGAAATCGGCATCACGCTAAAGGCCAACAAGACGAGCGAGCTCATAGAGATGGGCGT
CAGGAACAAGCGGGCCCTCTTCGCCGAACTCTCCATGGCGTCATTGTCCCTAGATCACGCGCGCGCAAGCTGGCTCGCCA
ACATGGCTGCCTTCGAAGTTTGCTCCACCCCAAACTTCCAAGCGGTCGACGACGAGGAGTCCGTCGTCTGCTCGTACCTC
CTCCTCCTTTCCATGTTTGCGGACCGGGAGGAGGACGTGCACGAGCTGCGAAGGAAGCGTCTCCTGCAGGGAGGAGGAGG
GCTCACCAACAAGGAGACACTCGACTTCTTCACCGGACTTCAGGGCCTGCCTCTCGGATCCAGCTATATCCGCACCATGG
AAGAGATTGAGAATTACAGGGTCAAGAGGCGGAAGCGGACCCGGTTGCACGCGTTCGTTTACAAGAACATGAGGATCATC
GTTACCGTCTTCTCCATCGTTGGTGTACTCGCAGGTATCTTCGGCTCGCTTATGTCCCTCAGGAGACGATC------TTA
A-------------------------------------------------------------------------------
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-----------------------------------------------------------
>chr1D_1_TraesCS1D01G391800
ATGTGATGTGAGATCTGAGATGGGATGGATTTCCAAAGTTTACTTACATGGCCACTAATTGGCATCAACTGTCAGCACAC
GCTTATGCTTAGCACACATGCATGTAGGCCCTCTTAACATGCAACAACTGATAGTTTGTTGTGACCCCTTGACAAAACTC
GTTTGACATTTCTTTCCATTGCATCTCAGC---CCACCCTTTGTTTGTTAGGGACCTATCTTAGCATGCAAATATCTCTC
AACACCATGGAATGGTGCGGCTCTGTATAAACAACTACTCCCTCCGTCCGAAATTACTTGCCGGAGAAATGGATGTATCT
AGACGTATTTTAGTTCTAGATACATCTATTTTTATTTATTTCTGCAACAAGTAATTCCAGACAAGGGTAGTATTTGAAAA
CTCGTAGTACTACAATCTACCGACACTTGGAAAAGAGCTCGGGATAAAGAAAGTATAGGGGGAGATACACAAGACGAGGG
GCAAACCAGTACCTGCGGTGATCTTCTTCAGATGAGAGGTGAAGTTCATTTGGCATGTTTTGTCCCACCGTTAGTAGACA
TCCACTGTGATCGACGAGTGTGCCTACCTATGCACTTGTGGCAGGTGGAAATGTATGTATGTCAGTATGTGGATGTGGGC
AACTGGGCATGTGGCCAACCTTGAGTGAATAAAACAAAAGCGAGATGGACATGGCTGGTTGGTCAATTACTCAATACTAT
CTCTATAAGAGGAGAGACAAGGCTGTGCTTCTTCTTC---CCAGGCGAGGCCTCTCCCATGACAGTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTATTCTTGTCTTTTACCGTCTCTCTGCTTCCTGCTAGGCCAT
CAGTTTTCGTTTCTCCCATGCATTG-----TATTAGTCATGGCATGGACCCTGATGGATGCTAGCTGAAATCTTCTCTAT
GATCTCTTCATAGATATTTTGCCACCCTTCTCT--------------A-------------GGTGCTTTGCGACGTTCAT
GGCCGATTTGACAGGAAGGAGCATGGAACCACCAGCTGCTGCATGGCCACCCTGCGGCTTTCCGGCCAACTGGTCCTTGG
AACCTGTGTGGGCTCCTGGCTTCCCCGTCGAGTCTGCAGTGTGGTTCCAGACACATGCTTCTAGCAGCTCTAGCGAAGAG
CAGCTGCAACAGCTTCAGTATGGGGCAGCGACAACACCAAATTTAGCTATCC----------------------------
--AGGAAGAAGAAGAAGCACAATACAAGATGGAAATGGAGATCCACGACCCGATCCAAGTATTCGCGGAAGCAGCACACG
AGTTCAAGGTCGACATCAACATGAGGGACATGAAGATCCACAAGTACCCTGCAAGCATTCAACGTCTCGGCGGCTACTAC
ACAACCCCGACGACGGTGGCCATCGGGCCTTACCACCACGGGAGGGACCGCCTCAAGCCGGCGGAGAAGGTGAAGCACGT
GGCCGCCTACCACTGCATCATGGAATCGGGCCGCTCCGTCCAAGAGATGTACGCCGCGGTGGCCTCGGTCGCCGGCGAGA
TCCGAGGGCTCTACGACAAGGACATGGTGGCAGGTATCGGCGACGATGAGTTCCTGCCCATGATGTTCTATGATGCGTGC
TTCCTCGTGCAATACATGCTCACATGCACCAGTGGTGGCTCCGAGATGGATCCGTCACTGCGCAGCTACTTCGACGGAAA
CGATAGCGACATCTTCCACGACATCCTGCTGCTCGAGAACCAACTCCCATGGCGAGTGGTCAAGACCGTCATGGGGTTCA
GGCCGGTTCCCTTGGAGGAGTTCATCACTTACTTGAAAGATGGCCTGCAAGACCGCAAATTAACCGAGAAGAAGTCTCCG
GCATTGGACGATAGCTACGAGCCGCCGCACCTCCTCGGCCTTCTCCGATTCTACATTGTAGGGAGAAGCAACATCAAGCG
CACCCGCCTACCCCAAACCGAGTCCATGTCGTTCTCTGTGAGCGC-----------------------------------
-----------CATCGAGCTAGCGGAAATCGGCATCACGCTAAAGGCCAACAAGACGAGCGAGCTCATAGAGATGGGCGT
CAGGAACAAGCGGGCCCTCTTCGCCGAACTCTCCATGGCGTCATTGTCCCTAGATCACGCGCGCGCAAGCTGGCTCGCCA
ACATGGCTGCCTTCGAAGTTTGCTCCACCCCAAACTTCCAAGCGGTCGACGACGAGGAGTCCGTCGTCTGCTCGTACCTC
CTCCTCCTTTCCATGTTTGCGGACCGGGAGGAGGACGTGCACGAGCTGCGAAGGAAGCGTCTCCTGCAGGGAGGAGGAGG
GCTCACCAACAAGGAGACACTCGACTTCTTCACCGGACTTCAGGGCCTGCCTCTCGGATCCAGCTATATCCGCACCATGG
AAGAGATTGAGAATTACAGGGTCAAGAGGCGGAAGCGGACCCGGTTGCACGCGTTCGTTTACAAGAACATGAGGATCATC
GTTACCGTCTTCTCCATCGTTGGTGTACTCGCAGGTATCTTCGGCTCGCTTATGTCCCTCAGGAGACGATC------TTA
ATTTGTCTAACTTGTTTTTAGTGAACTTCC---CTGCGTCTGCAT--CTGCATCTGAATGCAATTTGCAGTGAAATGTTG
TCCATTTGTATTATTTATTTGTCTATT-GGGCATGGAATCTGCACATAGATGTATATGAGATTGGTTACTTGGTGTCACT
GGGCTAATTTATA----GCTGAACACTGCTCTTGCCAGACAATGCAGTTCTTTTAATCTACTTACTTTGTTGCATCTAGC
CGATAGGGTATTATGATAT--------GGATGGTGGTTAGCTGTAGATCTGGTCATGAGTGAGAGCTAAGCAGTGGGATA
ATGGCACCAACCATCCATGTGGTTGAGTACATCAAATCACCAATCAAGACCAAAGTATACGCGATCAAGATCATAAACTA
ATTGTGCAACCTTAGATGACATGCCACATTCATAGATGGACCTTGCTATACGGACGACAAAACTCAGACGGCTCCTGCAT
GACAGTGAAAATCCGACCGCACATGCATGTCCACAGCGGAGCAACGGCCGCTGGTTTTGTAGCCGTCCACACATCGTCCA
TGCTTTTTGGTTTGTAAAGCAGTTCCGTTTATAGATTCAACTGTAAACTCCCCAGTCCTAGTAAGTTTCCAGTGCAACTG
ATCGGGTTGATGAGACAGCTGGACCTCCATCAGTCTACTCACTAAATAGAGCCAAGCTTCCCACCGATTACCGGCTAGCG
TTCTCTTGAATTGAATATTAAGGGGATGGACTCAAATACTGTTGCAATATACGCGTCGCGTCGTTGAACAATACTATAAT
ATTGAAGCGCAAGGGGTGTCTCTCCTAGCCAAGTATCCTCCCAGAAACGCGTGTTGGTGCCATTTTCGATTATAAACTTT
GTCCTATTGAAAAAAGCTGATTTGACTCTCATCAGCCCTTTTCAGAAAGGCGAATCCGTCGGCCTTGCTGTCACTTGGGA
CAAAGTTTTGGAGGAAAGATACTTACTACGGAGAATCTGCGCCCATGTGGCCTCTGTCC
>chr1B_1
ATGTGACGTGAGATCTGAGATGGGATGGATTTCCAAAGTTTACTTACATGGCCACTAATTGGCATCAACTGTCAGCACAC
GCTTATGCTTAGCACACATGCATGTAGGCCCTCTTAACATGCAACAACTGATAGTTTGTTGTGACCCCTTGACGAAACTC
GTTTGACATTTCTTTCCATTGCATCTCAGT---CCACGCTTTGTTTGTTAGGGACCTATCTTAGCATGGAAATATCTCTC
AACACCATGGAATGGTGTGGCTATGTATAAATAACTACTCCCTCCGTCCGAAATTACTTGTCCGAAAAATGGATGTATCT
AGACGTAGTT-----CTAGATACATCTATTTTTATTTATTTCTGCAACAAGTAATTCTGGACGGGGGTAGTATTTGGAAA
CTCGTAGTACTACAATCTATCAACACTCCGAAAAGAGCTCGGGATAAAGAAAGTATAGGGGGAGATACACAAGACGAGGG
GCAAACCAGTACCTGCGGTGATCTTCTTCAGATGAGAGGTGAAGTTCATTTGGCATGTTTTGTCCCACCCTTAGTAGACA
TCCACTGTGATCGACGAGTGTGCCTACCTATGCACTTGTGGCAGGTGGAAATGTATGTATGTCATTATGTGGATG-----
---TGGGCATGTGGCCAACCTTGAGTGAATAAAACAAAAGCGAGATGGACATGGCTGGTTGGTCAATTACTCAATACTAT
CTCTATAAGAGGAGAGACAAGGCTGTGCTTCTTCTTC---CCAGGCGAGGCCTCTCGCATGACAGTCTTCTTCTTCTTCT
TCTTCT---------------------------TCTTCTATTCTTGTCTTCTACCGTCTCTCTGCTTCCTGCTAGGCCAT
CAGTTTTCGTTTCTCCCATTCATTG-----TATTAGTC-----ATGGACCCTGATGGATGCTAGCTGAAATCTTCTCTAT
GATCTCTTCATAGATATTTTGCCACCCTTCTCT--------------A-------------GGTGCTTTGCGACGTTCAT
GGCCGATTTGACAGGAAGGAGCATGGAACCACCAGCTGCTGCATGGCCACCCTGCGGCTTTCCGGCCAACTGGTCCTTGG
AACCCGTGTGGGCTCCTGGCTTCCCCGTCGAGTCTGCAATGTGGTTCCAGACACATGCTTCTAGCAGCTCTAGCGAAGAG
CAGCTGCAACAGCTTCGGTATGGGGCAGCGACAACACCAAATTTAGCTATCC----------------------------
--AGGAAGAAGAAGAAGCACAATACAAGATGGAAATGGAGATCCACGACCCGATCCAAGTATTCGCGGAAGCAGCACACG
AGTTCAAGATCAACATCAACATGAGGGACATGAAGATCCACAGGTACCCGGCAAGCATTCAACGTCTCGAAGCCTGCTAC
ACCACCCCGACGACGGTGGCCATCGGGCCTTACCACCACGGGGAGGACCGCCTCAGGCCGGCGGAGAAGGTGAAGCACGT
GGCCGCCTACCACTGCATCATGGAGTCGGGCCGCTCCGTCCAGGAGATGTACGCCACGGTGGCCTCGGTCGCCGGCGAGG
CCCGAGGGCTCTACGACAAGGACATGGTGGCAGGTATCGGCGACGATGACTTCCTGCCCATGATGTTCTACGATGCGTGC
TTCCTCGTGCAATACATGCTCACGTGCACCAGTGGTGGCTCCGAGATGGATCCGTCGCTGCGCAGCTACTTCGACGGAAA
CGATAGCAACATCTTCCACGACATCCTGCTGCTCGAGAACCAACTCCCATGGCGGGTGGTCAAGACCGTCATGGGGTTCA
GGCCGGTTCTCTTGGAGGAGTTCATCACTTACTTGAAAGATGGCCTGCAAGACCGCAAATTAACCGAGAAGAAGTCTCCG
GCATTGGACGATAGCTACGAGCCGCCGCACCTCCTCGGCCTTCTTCGATTCTACATTGTGGGGAGAAGCAACATCAAGCG
CACCCGCCTACCCCAAACCGAGTCGATGTCGTTCTCCGTGAGCGC-----------------------------------
-----------CATCGAACTCGCGGAAATCGGCATCACGCTGACAGCCAACAAGACAAGCGAGCTCATAGAGATGGGCGT
CAAGAACAAGCGGGTCCTCTTCGCCGAGATCTCCCTGCCATCATTGTCCCTGGACCATGCGCGCGCGAGCTGGCTCATCA
ACATGGCGGCTTTCGAGGTATGCACCACCCCAAACTTCCAAGCGGTCGAAGACGAGGAGTCCGTTGTCAGCTCGTACCTC
CTCCTCTTTGCCATGTTGGTGGACCGGGAGGAGGACGTGCACGAGCTGCGAAGGAAGCGTCTCCTGCAGGGAGGAGGAGG
GCTCACCAACAAGGAGGCGCTCGACTTCTTCACCGGGCTTCAGGGTCTACCGCTCGGATCCAGCTATATCCGCATCATGG
AAGAGATTGAGAATTACCGGGTCAAGAGGCGAACGCGGACCAAGTTGCACGCCTTCGTTTACAAGAACTTGAGGATCATC
GTTACTGTCTTCTCTGCTGTTGGTTTTCTCGCCGGTGTCTTTGGCTCGCTTATGTCTCTCAGGAGACGATC------TTA
GTTTCTCTAACTTCTTAGTGAACTTTCCGGCATCTGCATCTGCAT--CTGCATCTGAATGCCATTTGCAGTG--ATGTTC
TCCATTTGTATTATTTATTTGTCTATTCGGGCATGGAATCTCCAGAAAGATGTATATGAGATTGTTTGCTTGGTGCCACT
GGGCTAGTTTATATATAGCTAACCGCTGCTCTTGCCAGACAGTGCAATTCTTTTAATCTTCA-----TGTTGCACGTCGT
CGATAGGGCATTATGATATATTGATATGGATGGTGGTTAGCTGTAGATCTGGTCATGAGTGAGAGCTAGGCAGTGGGATA
GTGGCACCAACCATGC-----------TACATCAAATCACAAATCAAGACTAAAGTATGCATGAACGAGATCATAAGCTA
ATTGTGCAACCTTAGATGACATGCCACA----------------------------------------------------
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>chr1A_70
---------------------------------------------------------------------TGTTAGCACGC
GCTTATGCTTAGTACACATGCATGTAGGCTCTCTTAACATGCAACAACTGATAGTTTGTTGTGATCCCTTGACGGAACTC
GTCTGACATTTCTTTCGATCGCATCTCAGTCCACCACCCTTTGTTTGTTAGGGACCTATCTATAGCATGGAATTTCTCCC
AACACCATGGAATGGTGTGGTTGTGTATAAATAACTACTCCCTTCGTCCGAAATTACTTGTCAGAAAAATGGATATATCA
AGACTTATTCTAATTCTAGATACATCC----------ATTTATGTGACAAGTAATTTCAGAC------------TGGAAA
CTCGTAGTACTACAATCTATTGACACTTCGGAAAGAGCTCGGGATTAAAAAAAAAGTACAAGAGATGCACAAGACGAGAG
GCAACCCAGTACATGCGGTGATCTTCTTCGGGTGAGAGGTCAAATTCATTGGT---------------------------
---ACTGTGATCGACGAGTGTGCCTACCTATGCACTTGTGGCAGGTGGAAATATATGTATGTTTGTATGTGGATG-----
---TGGGCATGTGGCCAACCTTGAGTGAATAAAACAAAAGCCAGATGGACATGGCTGGTTGGTCAAT-ACTCAATACTCC
ATCTATAAGAGGAGAGACAAGGCTGTGCC---TCTTCTTCCCAGGCGAGGCCTCTTCTTCTTCT-TCTTCTTCTTCTTCT
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGTCCTTGTCTTTTACCGTCTCTCTGCTTCCCGCTAGGCCAT
CGGTTTTCGTTTCTCCCATTCATGCACTGATACTAGGC-----ATGTACCCTGATCGATGCTACCTAAATT-TCCTCTAT
AATCTCTTCATAGAATTTTTTTCACTCTTCTCT--------------ATGATCTCTTCACTGGTGCTTTGCGACGTTCAT
GGCCGATTTGACAGGGAGGAGCATGGAACCACCAGCTGCTGCATGGCCACCCTGCGGCTTTCCGGCCGACTGGTCCATGG
AACCTTTGTGGATTCCTGGCTACCCTGCCGATTCTGCAATGTGCTTCCAAACACATGTTCCTAGCAGCTCTAGCGGAGGG
CAGCTGCAGCAGGTTCAGCATGCGGCAGCCATAGCACCAAATTTAGCCATCCAAGAAGAAGACGACGAAGAAGATAATGA
TGAGGAAGAAGAAGAAGCACAATACAAGATGGAAATGGAGATCCACGACCCGATCCAAGTATTCACAGAAGCAACACATG
AATTCAAGGTCGACATCGACATGAGGGACATGAAGATCCATAGGTACCCTGCAAGCATTAAACGTCTCAAAGGCTCCTAC
ACCGCCCCGGCGACGGTGGCCGTCGGGCCTTACCACCATGGGAAGGACCGCCTCAAACCCGCGGAGAAGGTGAAGCACGC
GGCCGCCAACCACTGCATCATGGAGTCGGGGCGCTCCGTCCAAGAGATGTACGCCGCGGTGGCCTCGGTCGCCGGCGAGG
CCCGAGGGCTCTACGACAAGGACATGGTGGCAGGTATCGGCGACGATGACTTCCTGCCCATGATGTTCTACGATGCGTGC
TTCCTGGTGCAATACATGCTCACGTGCACCAGTGGTGGCTCCGAGATGGATCCGTCGCTGCGCAGCTACTTCGACGGCAA
CGATAGCGATATCTTCCACGACATCATGCTCCTCGAGAACCAGCTCCCGTGGCTGGTGGTCAAGACCGTCATGGAGTTCA
GGCCAGTGCCCTTGGAAGAGTTCATCACTTACTTGAAAGATGGCCTGCAAGACCGCAAATTAACCGAGAAGAAGTCTCCG
ATCTTGGACGATAGCTACGAGCCGCCGCACCTCCTCGGCCTTCTCCGATTCTACATTGTAGGGAGAGGCAACACCAAG--
--------------------------------------------C-----------------------------------
-----------CATCGAGCTCGCGGAAATCGGCATCACGCTGACAGCCAACAAGACCAGCGAGCTCATAGAGATGGGCGT
CAAGAACAAGCGGGTCCTCTTCGCCGAGATCTCCTTGCCGCCATTGTCCCTGGACCATGCGCGCGCGAGCTGGCTCGTCA
ACATGGCGGCCTTCGAGGTATGCACCACCCCAAACTTCCAAGCGGTCGACGACGAGGAGTCCGTTGTTAGCTCATACCTC
CTCCTCTTTGCCATGTTGGTGGACCGGGAGGAGGACGTGCACGAGCTACGAAGGAAGCGTCTCCTCCAGGGAGGAGGAGG
GCTCACCAACAAAGAGGCGCTCGACTTCTTCACCAGCCTTCAGGGTCTACCTCTCGGATCCAGCTATATCCGCATCATGG
AAGAGATTGAGAATTACCGGGTGAAGAGGCGAACGCAGACCAAGTTGCACGCCTTCGTTTACAAGAACTTGAGGATCATC
GTTACTGTCTTCTCCGCTGTTGGTGTACTTGCCGGTATCTTCGGCTCACTTATGTCTCTCAGGAGAAGATC------TTA
ATTTCTCTAATTTC-TTTTAGTGAACGTTC---CTGCATCTACAT--CT-------AATGCCATTTGCAGTG--ATGTTC
TCCATCTGTATTATTTAT--GTCTATT-GGGCATTGAATCTGCAAATACATGTATATGAGATTGTTTACTTGGTGTCACT
AGGCTAGTTTATA----GCTAAACACTGTGCTTGCCA-------------------------------------------
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>chr1B_582
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------------------------TACGTATGCACTTGTGGCAGGTGGAAATGTATGTATGTTAGTATGTGGATG-----
---TGGGCATGTGGCCAACCTTGAGTGAATAAAACAAAAGCCAGATGGACATGGCTGGTTGGTCAAT-ACTCAATACTCC
ATCTATAAGAGGAGAGACAAGGCTGTGCTTCTTCTTCTTCCCAGGCTAGGCCTCTCCCATGACAGTCTTCTTCTTCTTTG
TCCTCTT------------------------------CAGTCCTTGTCTTTTACCGTCTCTCTGCTTCCCACTAGGC---
CGGTTTTCGTTTCTCCCATTCATGCACTGATACTAGGC-----CTGTACCCTGATCGATGCTAGCTAATTT-TTCTCTAT
AATCTCTTCATAGAATTTTTTTTCACTCCTCCCTATGATCTCTTCACA-------------GGTGCTTTACGACGTTCAT
GGCTAATTTGACAGGGAGAAGCATGGAACCACCAGCTGCTGCATGGCCACCCTGCGGCTTTCCGTCCGACTGGTCCATTG
AACCTTTGTGGATTCCTGGCTACCCTGCCGATTCTGCAATGTGCTTCCAAACACATGTTCCTAGCAGCTCTAGCAGAGGG
CAGCTGCAGCAGGTTCAGTACACGGCAGCCACAACACCAAATTTAGCTATCCAGGAA---------------------GA
TGATGAAGAAGAAGAAGCACAATACAAGACAGAAATGAAGATCCACGACCCGATCCAAGTGTTCGCGGAAGCAGCACACG
AGTTCAAGGTCGACATCGACATGAAGAACATGAAGATCCACAGGTACCCTGCAAGCATTCAACGTCTCGGCGGCTACTAC
ACAACCCCGACGACGGTGGCCATCGGGCCTTACCACCACAGGAAGGGCCGCCTCAGGCAGGCAGAGAAGGTGAAGCATGT
GGCCGCCTACCACTGCATCATGGAGTCGGGCCGCTCCATCCAGGAAATGTACGCCGCGGTGGCCTCGGTCACCGACGAAG
CCCGTAGGCTCTACCACACGGACATGGTGGCCGGTATGGGCGACGATGACTTCCTGCCCATGATGTTCTATGACGCGTGC
TTCTTGGTGCAGTACATGCTGACTTGCACCACCAATGGCTCCGAGATGGATCCGTCGATGCGCAACTACTTCGATGACAA
CAACGGCAACATCTTCCACGACATCATCCTGCTGGAGAACCAGCTCCCATGGCGGGTGGTCAAGACCGTCATGGGGTTCA
GGCCCGTGTCCTTGGAGGAGTTCATCACCTCATTGAAAGACGGCCTGCAAGACCGCAAATTAACCGAGAAGTCTTTGGTC
CTT---GACGATAGCTACGAGCCACCGCACCTCCTCGGCCTTCTCCGGTTCTACATTGTAGGGAGAAGCAACACCAAG--
--------------------------------------------CGCAACTCCCTACCCCAAACTGGGTCGATGGGGATC
CCTGTGAGCGCCATCGAGCTCGCAGAAATTGGCATCGCACTGACGGCTAACAAGACGGGTGAGCTCATAGAGATGGGAGT
CAGGAACAAAGGTACCCTCTTCGCCGAGCTCTTCCTGGCACCGATGCCCCTGGACCATGTACGCGCGAGCTGGCTTGTCA
ACATGGCAGCCTTCGAGGTATGCACCACCCCGAACTTCCAAGCGGTCGACGATAAGGAGTCTGTTGTCTGCTCATACCTC
CTCCTCCTTTCAATGTTCGTGGACCGGGAGGAGGACGTGCAAGAGCTACGAAGGAAGCGTCTCTTGCTGGGAGGAGGAGG
GCTCGCCAACAAGGACGCCCTCGACTTTCTCATTGGGCTCCACGGCCTGCCTGCTGGGTCTGGCTACCTCCTCACTATGG
AAGAGATCCATAATTACAAAGCGAAGAGGCGGACGCGGACCCGGTTGCACGCCTTCGTTTACAAGAACTTGAGGATCATC
ATCGCCTTCTTCTCCGCCATTGGTGTGCTTGTCAGTATCTTTGGCACACTCATGTCTCTCAAGAGACGATCGCTCCCTTA
ATTTGTGTAACTTCTTTTTAGTGAACTTCC---CTGCATCTGCATGACTGCATCTGTAAGCCATTTG-------------
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>SNPs
------S-------------------------------------------------------------------------
-------------------------------------------------------------------------S------
-----------------------------S--------------------------------------S-----------
-----------------S----S--------S----------------------------S-S--S--------------
------------S-------------------------------------------------SS------------S---
-------------------S--------S---------------------------------------------------
---------------------------------------------------------------------S----------
---------------------------------------------------------------------------SSSSS
SSS-----------------------------------------------------------------------------
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-------------------S------------------SSSSS-------------------------------------
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--------------------------------------S-----------------------------------------
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------------------------------------------S-------------------------------------
-------------------------------------------S------------------------------------
------------------------S------------------------------------------------------S
S------------------------------------------------S------------------------------
-----------------------S--------------------------------S-----------------------
------------------------------------------------------S-------------------------
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------------------------S-----------S-------------------------------------------
--------------------S--------------------S-S------------------------------------
---------------------------S------S----------------S--S--S--------S----------S--
-------S--------S--S---S----------------------------------------S---------------
-----------------S-S------------------------------------------------------------
----------------S-S-----------------S-------------------------------------------
---------------------------------S------------------S---------------S-----------
---------------SS---------------S-----------------------S-----------------------
-------------S-----------------------S-----------------------S----------SS-----S
--------------------------------------------S-------------------S---------------
------S-------------S--------------------S----S------------S-SSSSSS-------SS-S-S
--------S-----------------------------------------------------------S-----------
S-------------S-SSSSSSSSSSS-------------S---------S-------S-SS--S-S---------S---
----------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_303
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-------------------------------------------CCGTCCGAAATTACTTGCCG-----------------
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>reverse_2248
--------------------------------------------------------------------------------
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-------TGCCTTCGAAGTTTGCTCCA-----------------------------------------------------
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>forward_2212
--------------------------------------------------------------------------------
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--------------------------------CCATGGCGTCATTGTCCCTA----------------------------
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>reverse_3345
--------------------------------------------------------------------------------
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----------------------------------------------------------------CGATTACCGGCTAGCG
TTCT----------------------------------------------------------------------------
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