>input_sequence_49305
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------------------ATGGTTGTGTCCGTTGTGCTGCTCACC----------------------------AGCTGGC
TCTTATCAGTGGGCCTACCCTCCCAAGCCCTAAATGTGAAATCAAAGACCTTCCGTTCCCCTCCCATCTTATTGGCCCTT
GGATCAGTCTCAAACAAGTACTACTATGATGTTGCCTTC-CCCGAGGCCACCTTGCCGTCAAGAGCTTTGACGCCGAGGT
AGTCGACGAGAACGGCATCCCCGTTCCACTCCACGAGACGTACCTGCATCACTGGGTTGCAGTACCATACTATGCTTTGA
AGAAGGGCCATGGCGCGCGGAAGGGGATACTCACAAGGA---------GGAACGATGGAGTCTGCAAGACCAGTCTAGGG
CAGTACTTCGGGCATGGTTCTGAGACTCGCCACACCTCCACATGGGTCCCTGATCGTTATGGCATAGAGACCGGCAATCC
GGAGAAGGCCCCTCCAGGCTACGAGGAGAAATGGTCCCTCAATATTCACGCCATCGACACAAGGGGAGTTATCGACAAGC
CTGGGTGCACCGAGTGCAAGTGCGACCTTTACAACGTTACGGTTGGCGAGGACGGGCGAGCAATCTCGAAGAACTACACT
GGAGGAATGCTCTGCTGCTATGATCAGACGCGGTGTCGGGTCAAACAAGGGTTCATTGGGAACGCGCGGAAGCTGTTCTT
TCAGTACACGGTGACGTGGCTCGACTGGACCGATGCCATGGTGCCGGTCAGTATCTACGTAATTGATGTCATTGATACCG
CTCTGCTCGCTGGAACTGCCCAGGGTTCTTGCAAGGTATATATGCGAAATATATAGAACTTCACATGACGGCAACTCTAT
AAGAATTTGGTAACTCTCGCATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATT
ATTATTATTATTATTATTATTATTTCAAACTAATCACAATCTGAAATTAAGCTAAGTGTTTACTAGGTTGGTTGGTCTAT
CTATCTATGATTTAGGGTTTAGGGTTTTAAGCTGTACGTTGATTGTGCAGGTGGAGTATCATGCAGTCCAGAAAACCGAG
CCCACAATGAGTGTATCCATGTCAAGGCTGCTAGAGTGATCTTACCTCGTGGAGGCGACATCGTGCTCGGCGTCGATCGG
GCACCAGCACTCGAGCGGAACTGGTGCTTCTTTGCATGGCCAGGTAATGGATCGGATCAGTGCCCTAATCGCTTATCTGT
TGTGCTTATGCACTGCTCTGCTCAGTGCTACTACTGTATAATATTCTGAGTGATGTACACACACATATTCGACTTACCAC
AGGACGGACACGCC---------TTCTCTGTGAATCGCTTCCAATCTACGGCA------------CAGGGAACGAGGCAA
ACTACATGGTCGGCATGTCGACGTGCTACCCCAAGCCGGGATCCACCAAGATGAGCGACGGCGAGGTGCT---CAGCAGC
GACCGCCGGCACACCGGCGTCATGGGCCTGTTCTACGTCCTCGTACGTGGCCTAGCTAGCCGCCATCCCGGCCGGTGCTG
A-------------------------------------------------------------------------------
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>chr1B_1_TraesCS1B01G414500
CGACTTGCCTAATATATAAAAGTTTCAGTTCGTAGCACCTCTTCTTCCTCTCACAATTCTGTGGAGATTTCTCTCGTGGA
CAAACACCATGAAGAAACTCAAAGAAAACA----------CACACACACACACACACACACACACACACACACACACACA
TGCATGCATTGATGCATATGCCAGGAAGAAAGCCAACTAGCTTTGCCAAGAGGCTCACCTCCTTGGTCACAGGGGCGGAG
CCATGAGATTTTGGACCGGACCATATACCTATGAATATTAAGATGGGCCAGAGAAAAAGAAGAAACCCAACAACTTGTAT
TCATTCGCTGGTCATGGGAGTGCATGTAGGCAGTGGTGTGTTAAAACATGTTGTTGGGTTTCTTCTTTTCATCACCACTC
TCAGATTAATGAATACAAGTTTATGCTGCATATATATACTCACTTTTGGTCTTACATGACTTTGCTATTCGCCGGCGAGT
TTTTGTGTGCGTGTCTTGGTGTTGGCTGCGTGCATCTTAGCTATGCAGAGGCCGGGTGTGTGCTCATTGTGTTTGTATCC
TCTTGATGCTTCATCTTGAGTCAATAAAAATTCACCCTTTATCGAAAAAAAT-ATATACTCACTTTTGTTGCTGCATTTT
CGTTGGTAATGAACACAAGATATTTTGTAGTATGTTTTCAGCCAAATATAAGGGATGTTACCATTCGTTAGGTTTTCTTC
AAAAACAGTTAATCCACACCACACGTACGACAACAAATGAAGTAGGCTACTGTAGTTATTACTACTCCCTCTGTATCAAA
AT-------GTTTTTTGGTTTTCCATAGAGCACAAAAAACGTCTTCTGTTTTGTTACGAAGGGAGGAGTATTTATCAGGT
GTTGTTAGCT----------------------------------------AGTTTGCTGCCATATATGTTGGTTTGCTTC
TTTTTTTGCATAGTCCTCCTAGCTAGCTACCTATTAGTTTCTTCTGATAGATCGATTCATGCTCGGCTTTTGCAGCTGCT
GGTTACAAGAAGATGAAAATGGTTGTGTCCGTTGTGCTGCTCACC----------------------------AGCTGGC
TCTTATCAGTGGGCCTACCCTCCCAAGCCCTAAATGTGAAATCAAAGACCTTCCGTTCCCCTCCCATCTTATTGGCCCTT
GGATCAGTCTCAAACAAGTACTACTATGATGTTGCCTTC-CCCGAGGCCACCTTGCCGTCAAGAGCTTTGACGCCGAGGT
AGTCGACGAGAACGGCATCCCCGTTCCACTCCACGAGACGTACCTGCATCACTGGGTTGCAGTACCATACTATGCTTTGA
AGAAGGGCCATGGCGCGCGGAAGGGGATACTCACAAGGA---------GGAACGATGGAGTCTGCAAGACCAGTCTAGGG
CAGTACTTCGGGCATGGTTCTGAGACTCGCCACACCTCCACATGGGTCCCTGATCGTTATGGCATAGAGACCGGCAATCC
GGAGAAGGCCCCTCCAGGCTACGAGGAGAAATGGTCCCTCAATATTCACGCCATCGACACAAGGGGAGTTATCGACAAGC
CTGGGTGCACCGAGTGCAAGTGCGACCTTTACAACGTTACGGTTGGCGAGGACGGGCGAGCAATCTCGAAGAACTACACT
GGAGGAATGCTCTGCTGCTATGATCAGACGCGGTGTCGGGTCAAACAAGGGTTCATTGGGAACGCGCGGAAGCTGTTCTT
TCAGTACACGGTGACGTGGCTCGACTGGACCGATGCCATGGTGCCGGTCAGTATCTACGTAATTGATGTCATTGATACCG
CTCTGCTCGCTGGAACTGCCCAGGGTTCTTGCAAGGTATATATGCGAAATATATAGAACTTCACATGACGGCAACTCTAT
AAGAATTTGGTAACTCTCGCATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATT
ATTATTATTATTATTATTATTATTTCAAACTAATCACAATCTGAAATTAAGCTAAGTGTTTACTAGGTTGGTTGGTCTAT
CTATCTATGATTTAGGGTTTAGGGTTTTAAGCTGTACGTTGATTGTGCAGGTGGAGTATCATGCAGTCCAGAAAACCGAG
CCCACAATGAGTGTATCCATGTCAAGGCTGCTAGAGTGATCTTACCTCGTGGAGGCGACATCGTGCTCGGCGTCGATCGG
GCACCAGCACTCGAGCGGAACTGGTGCTTCTTTGCATGGCCAGGTAATGGATCGGATCAGTGCCCTAATCGCTTATCTGT
TGTGCTTATGCACTGCTCTGCTCAGTGCTACTACTGTATAATATTCTGAGTGATGTACACACACATATTCGACTTACCAC
AGGACGGACACGCC---------TTCTCTGTGAATCGCTTCCAATCTACGGCA------------CAGGGAACGAGGCAA
ACTACATGGTCGGCATGTCGACGTGCTACCCCAAGCCGGGATCCACCAAGATGAGCGACGGCGAGGTGCT---CAGCAGC
GACCGCCGGCACACCGGCGTCATGGGCCTGTTCTACGTCCTCGTACGTGGCCTAGCTAGCCGCCATCCCGGCCGGTGCTG
ATCGCTTTCCCAGTTCCATGCATGTGAGCTCTGCTATTTCTTCATCCATTTTGGGATGTGGAGAGTTGCAAACGTCGTAT
AATGGAGCTGAGTCGTATTCACTTGATAACCTCTCTCTCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTCTCTAGATCTCTCTCTCTCTCTCATGCCCTTCCAAAGGTTGCCCCAAATGCTTCTGGTGATAACAAGTGGCA
TATGCGCCATTTGTCGTCGCCAGAGAGTTTTTATGAGTTTCTTTTTGTACAAAA--GGGGATGAGTATTTTATCCGGTTT
TTGAAAATGAAGTACCTTTTGAACCGTGCATCTCAGTGCGGACTGTTTCACCATTGTGTTCTCCCCGTCGAGATTTTAGG
AACAAATCCCATTAAACTCCATGGGGTTCTAACTTGAGCTCCCTTGCTCCTAGAACATCATC---TTTTTTTTAAACGAG
CCAAAAGACTTGCCATTTCATTAACTAAGGGAGAAGGTTTTAGACAGACCCGCGGCATTACAATAC-----TCAAGTGCT
TGGCACCCGCCAAAGCC-AAAGCGACACCTCATACTTGATCTTGTTGATGATGACCACCGATGGAACCGCCACGTTGCGG
AAGACTCGAGCGTTTCTCTCGGGCCAAACCTCCCAAGAGATGAGCATCATCAATGAGGCAAGGGCTTTGGGAGAGCCGAG
ACGAATCTGAAGGTTGCCGTTCCACCATCCTTTGACCGGAGCGCTCCTAGGA
>chr1B_30
TCGCAA-----------------------------CACCTCTTCTTCCTCTCACAATTCTCTTGAGATTTCTCTCGTGGA
CACACACCATGAAGAAACTCAAAGAAAACACACACACACACACACACACACACACACACACACACACACACACACACACA
--CATGCATTGATGCATATGCCAGGAAGAAAGCCAACTAGCTTTGCCAAGAGGCTCACCTCCTTGGTCACAGGGGCGGGG
CCCTGAGATTTTGGACCGGACCATATACCTATGAATATTAAGATGGGCCTGAGAAAAAGAAGAAACCCAACAACTTCTAT
TCATTCGCTGGTCATGGGAGTGCATGTAGGCAGTGGTGTGTTAAAACATGTTGTTGGGTTTCTTCTTTTCATCACCACGC
TCAGATTAATGAATGCAAGTTTATGCTGCATATATATACTCATTTTTGGTCTTACATGACTTTGCTATTCGCCGGCGAGT
TTTTGTGTGCGTGTCTTGGTGTTGGTTGTGTGCATCTTAGCTATGCAGAGGCCGGGTGTGTGCTCATTGTGTTTGTATCC
TCTTGATGCTTCATCTTGAGTTAATAAAATC-CACCCTTTGTCGGGAAAAAAAATATACTCACTTTTGTTGCTGCATTTT
CGTTGGTAATGAACACAAGATATTTTGTAGTATGTTTTCAGCCAAATATAAGGTATGTTACCATTCGTTAGGTTTTCTTC
AAAAACAGTTAATCCACACCACACGTACGACAACAAATGAAGTAGGCTAGTGTAGTTATTACTACTCCCTCTGTATCAAA
ATACAAGATGTTTTTTGGTTTTGCACAGGGCACAAAAAACGTCTTCTATTTTGTTACGAAGGGAGGAGTATTTATCAGGT
GTTGTTAGTTACTCCTTCCGTTCCAAATTACTCGTCGTGGTTTTAGTTCAAGTTTGCTGCCATATATGTTTTT-------
TTTTTTTGCATAGCCCTCCTAGCTAGCTACCTATTAGTTTCTTCTGATAGATCGATTCATGCTCGGCTTTTGCAGCTGCT
GGTTACAAGAAGATGAAAATGGTTGTGTCCGTTGTGCTGCTCACCAGCTGGCTCTTATCCATCTAAAAGAAAAAGCTGGC
TCTTATCAGTGGGCCTACCCTCCCAAGCCC-----GTGAAATCAAAGACCTTCCATTCCCCTCCCATCTTATTGGCCCTT
GGATCAGTCTCAAACAAGTACTCCCTCCGTCCGAAAATACTTGTCGTAAAAATGAC------------------------
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-----------------------------------------------TAAAAATAGATATATTTAACATTAAA-------
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----------------------------------------------------------------ATATTCGACTTACCAC
CTAAGCCTATGCTCCACGGGATATTTTCCGTGAATCGCTTCCAACTTACGGCACAGGAAAGGAGGCAGGGAACGAGGCAA
ACTACATGGTCGGCATGTCGACGTGCTACCCCAAGCCGGGATCCACCAAGGTGCTGACCATCTTCTCCAACTACAGCAGC
GACTACCAG-----------------------------------------------------------------------
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----------------------------------GAGTTTCTTTTTGTACAAAAAAGGGGATGAGTATTTTATCCGGTTT
CTGAAAATGAAGTACCTTTTGAACCGTGCATCTCAATGCGGACTGTATCACCATTGTGTTCTCCCCGTCGAGATTTTAGG
AACAAATCCCATTAAACTCCATGGGGTTCTAACTTGAGCTCCCTTGCTCCTAGGACATCATCTTTTTTTTTTTAAACGAG
GCAAAAGACTTGCCATTTCATTAATCAAGGGAGAAGGTTTTAAACAGACCCGCAGCATTACAATACTCAAGTCAAGTGCC
TGGCACCCGCCAAAGCCCAAAGCCACACCTCATACTTGATCTTGTTGATGATGACCACCGATGGAACCGCCACGTTGCGG
AAGACTCGAGCGTTTCTCTCGGACCAAACCTCCCAAGAGATGAGCAACATCAGTGATGCAAGGGCTTTGGGAGAGCCGAG
ACGAATCTGAAGGTTGTCGTTCCACCATCCTTTGACCGAAGCGCTCCTAGGA
>chr7B_1071
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------------------------------------TGAAATCAAAGACGTTCCGTTCTCCGCCCATCTTACTGGGGCCT
GGATCAGTCTCAAACAAGTACTACCATGACGTCGACTTCCCCCGAGGCCACCTTGCAGTCAAGAGCTTTAATGCTGAGGT
CGTCGATGAGAATGGCGTCCCTGTCCCGCTCCATGAGACTTACCTGCATCACTGGGTTGCAGTACCATACTATGCTCTCA
AGGACAACCAGAGCTCTGATGCGCAAAAGGTTCCCGCAATGCTTAAAGGGAATGATGGAGTGTGCAAGAGAGCACTAACC
CAGTACTTCGGGCTCGGTTCCGAGACTCGCCACACCGCCACATGGGTTCCTGATCCTTATGGAATTGAGACCGGCAACCA
AGAGAAGGCCCCTGAAGGCTATGAGGAGAAATGGCTGCTCAATATTCATGCCATCGACACGAGGGGCGTGGCCGACAAGC
CTAGCTGCACCGAGTGCAAGTGCGACTTCTACAATGTCACAATTGATGAGTATGGGCGCACAGTCTCGAAGAACTACACT
GGTGGGTTGCTTTGCTGCTATGATCAGACCCAGTGTCGGCTCAAAGCAGGGTTCAACGCCGAGGTGCGGAAGGTGTTCTT
GCAGTACACCGTGACTTGGCTCGACTGGACTGATGCGGTGGTGCCTGTCAAGATCTACATATTTGACGTTACGGATACCG
CTATGCTCG-----------------------------------------------------------------------
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>SNPs
SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------S-S-----------------
--S-----------------------------------------------------------------------------
SS----------------------------------------------------------------------------S-
--S----------------------------------------------S--------------------------S---
------------------------------------------------------------------------------S-
--------------S---------------------------S-------------------------------------
-------------------------S--S---------------------------------------------------
---------------------S-------SSS--------S---SS-----S----------------------------
-----------------------------------------------------S--------------------------
-------------------------------------------------S------------------------------
----------------------S--S--S------------------S--------------------------------
--------S-------------------------------------------------------------SS-SSSSSSS
-------------S------------------------------------------------------------------
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------------------------------SSSSS---------------------------------------------
------------------------S-------S-S---------------------S------------S-S--S-----
S-----S-----S---S----S--S--S-----S-----S------------------------------------S-S-
--S-SSS---SS--S-SSSSSS-SSS-SSS-SS-SSSS--------------S--------S-------SSSSS---SSS
-------------SS-----S---------------S----------S-------S------S--S-----------S-S
S------------SS------S------------SSS-----------S-----------S-----S--SSS--------
--S-S---------------------S-S-----S--S--SS---SS---S-S-----SS--S-----------------
--S--SS----S-----------------S-S-------S-----SS--------SS-SSS-S-S-------S-------
S--------S-----S--------------S-----SS-------S----SS------S--S----S--S-SS-------
--S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------
SSS-SSSSSSSSS------------S--S---------------SS----------------------------------
--------------------------------------------------S--SSSSS-SS-SSSSSSSS----------
---SS--S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------------------
S----------------------------------S----------S---------------------------------
-----------------------------------------------------S--------------------------
S-----------------------SS----------------S----------S-------------------------S
-----------------------S--------------------------------------------------------
----------------------S-----------------------S-----S---S-----------------------
----------------S---------------------S-------------
>forward_509
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----------GTGTCTTGGTGTTGGCTGC---------------------------------------------------
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>reverse_2406
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-----GGACACGCCTTCTCTGTGAA-------------------------------------------------------
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>forward_1819
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---------------------------------------GGTGCCGGTCAGTATCTACG---------------------
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>reverse_3086
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---------------------------------------------GTTGCCCCAAATGCTTCTGG---------------
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