>input_sequence_49266
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-----------------------------ATGGATTTCCCCGTTTCTCCTGTTGACAAGTAAGTTTTTTGATTTATTCGT
TCTGAGGCTTAGATTGAGCTTGCTAGTGGTTATCTCCTCCGCTGATTGTTAGCAGATTGCCAATCTTTCCAGATGAGGCA
TCTAGCGCGGCGGCGCTGCTCGAGATGTGCGGGCGCGGTGCAGAACGCACCGGCGAGGGATCTCGTGGGGCAGTCCTGTG
CGGGGCAGCGCGGACCTCTGCTGAAAACACCGGTCGTTTTTTGGGCGAAGAATCAAGTGTTGGCGGGGTTGGAGGACCTA
TGCCCTATTTCAGCGAGAGCGAAGGCGACAACGCAGATGCAATCCAGGATGAGGAGCAGAAAGAGGCTGCAATGGGAGAA
ATTGGTGAAGACGACGATGCTGCCACTGTTCAGTCCACTGGGAAGGTAGATCCTCAGGCTCCAGGATGGACAAAAAGGTA
TGTCATTTTCAGAACTGTTTGTGCACTTT-CCTGAAAGTATCATCTTTACTTGAAATGAAAAAAATCCGACAGTATGTTT
CAATAAGCAGAAATGAAAAAAACATTTCCACTTTGTTGCATGTATTGCTTGGTTCAGACGCTAGGGGATGTTTAGTTGCT
TGATTTAGTTTGCGTCTTCAGTGATGGTACTGTTGTTGTTGTGCTTATGAAAAAACTGTG-AATGCCTACAGGGTAAGAG
TTGGGAATCAGCCGTTGGATAGAGTTTCATGTCCTGAGAGAGTAGGGGCACTGGAGCAAACAATCAGGGGATATGCTGAA
AAGCTCGGGGATCATGTGCTTGAGCCAGTAATTGGGATGACATTTGATTCATTGGGCGAGGCGTACGATTTTTATAATTT
GTATTCTTGGGAAAATGGCTTTGGCATCAGATACGCCAAAAGCATGCTTAATGCAGAGAAGACAAAGTGTATGCAGGAAG
TAGTATGTGGATGTGCCGTGAGTTCTTCCACGCTTTATCATTAACGAGCATGAATAAGTTTTGGTTGGATGATGGAAGTT
AATGCTAACAACTAGATGTGTTT-TTTTCCAGGGGAAACCAACTAGGGAGAATAGCAGGTCCTGCCGGTGTGAGTGCCCC
GCGATGATAAGATTGTTGAGAACATCAGACAATGGCTGGTACATAACAGAGCACAGACCAAGTCATAATCATTCAATGAC
GCAGACATGCGGCGAGAAAGTGCATTGGCTGTCACATAAGCACATAGACATGTACACCAAGGATTTGGTGAAGCAGCTAA
GGCAGAATAATGTGAATGTCACAAAGGTGTACAGCATAATTTCAAGTTTTTTCGGGGATGCTGAGAAAGTTCCATTTACT
AAAAGATCACTGCGAAACCTGTGCGGTAAGATTAACAGAGAGCAAGCTGAGGATGATGTCAAGAAGACAATTGATGTCTT
TGCTGAGATAGCAGCTAAAGATCAGGAATTTGTTTTTAGAGTACAACCAGATAACGGCTGTAGGATTAAGAATTTGATGT
GGGCTACAGGCATCAGTAGAAACCAGTACATGTAG---------------------------------------------
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---------------------------------------------------------------------------
>chr1A_1_TraesCS1A01G391400
TTCAGCTGGCCT--GAGGCTGATCAATTCGATTATGCTGTGTGCAATCCCGCCACCCAGGAGTGGATTTTGTTGCCTCCT
ATAGAATTGGATGACCTTTCGCATATAGGCAAATACTCTTTG--------------------------------------
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----------------------------TGCTTTGACCCAGCCATTCCTTCCCGCTTTATGGTATATGTGCCCCTGTTCG
CAAAGTATGGCCTGCCCATGCCCGTGGCAATGATCTACTCATCACAAACTGGAGGATGGACTTCCATACAGGGTCAGTGG
GATGACCATTGCGATGATCGATCCACGGGTTCTCATAAAGCGTTCTTTTTGTGATTCAGAACGCGTCTCCCTGAATGGCA
CTATCCACTTTTATACTCATTTTTCAATAGTCACAGTGGACATGGAGGGGAGTCCTTGGAGGGAAATTAAAATGCCACCC
GCCATGACAAAGGGCTATGGCAATCTTTTCATTGGGAGGTCCCAGGGACACTTGTATGCTTGGCGTACAAATATCCGCCA
ACTCTCCATTTGGGTTCTTGACGATCATGATAGTGGACAATGGACCCTCAAGTGTACTGTTAACTGCTTGGAACTGTTCG
GAAGGGAATGTCGTAAACATGATATCTTCACGATGTTTGGGAGCGGCGTTTTGGCACCCGGGTCCAGATGATCCCGCTAT
CAGCGCCGTCCAGAAACGCGCTGTGATCCGTGACCTGTATTCCTGTGCTAGCAATACGGGGAGTGGATAATGCCATAAGG
TATGTGTACGTTGGTAGTCAGATGGACGGTCGTTTGCGGGCGTCCAGAGGCCGTTAACGGACTGCAGCCGAG-CCGTTTG
AGGCGTCGTTGACGATGTTGGCAGCTGTACTGAGCTGGACCCACCTGGCGGTATTGGTACACATGGACGTGGCAGCACCA
CCACAAAGGGTTTGCCCCTGGGGTGGGGTTGGGGATCGAAAAAAAAACAGAGGGGTGGGTTGCTGCATCTGCGGCGGCGG
TGTGGCCGCGCCGGCGGAGCCGTTTTGCAATGGATTTCCCCGTTTCTCCTGTTGACAAGTAAGTTTTTTGATTTATTCGT
TCTGAGGCTTAGATTGAGCTTGCTAGTGGTTATCTCCTCCGCTGATTGTTAGCAGATTGCCAATCTTTCCAGATGAGGCA
TCTAGCGCGGCGGCGCTGCTCGAGATGTGCGGGCGCGGTGCAGAACGCACCGGCGAGGGATCTCGTGGGGCAGTCCTGTG
CGGGGCAGCGCGGACCTCTGCTGAAAACACCGGTCGTTTTTTGGGCGAAGAATCAAGTGTTGGCGGGGTTGGAGGACCTA
TGCCCTATTTCAGCGAGAGCGAAGGCGACAACGCAGATGCAATCCAGGATGAGGAGCAGAAAGAGGCTGCAATGGGAGAA
ATTGGTGAAGACGACGATGCTGCCACTGTTCAGTCCACTGGGAAGGTAGATCCTCAGGCTCCAGGATGGACAAAAAGGTA
TGTCATTTTCAGAACTGTTTGTGCACTTT-CCTGAAAGTATCATCTTTACTTGAAATGAAAAAAATCCGACAGTATGTTT
CAATAAGCAGAAATGAAAAAAACATTTCCACTTTGTTGCATGTATTGCTTGGTTCAGACGCTAGGGGATGTTTAGTTGCT
TGATTTAGTTTGCGTCTTCAGTGATGGTACTGTTGTTGTTGTGCTTATGAAAAAACTGTG-AATGCCTACAGGGTAAGAG
TTGGGAATCAGCCGTTGGATAGAGTTTCATGTCCTGAGAGAGTAGGGGCACTGGAGCAAACAATCAGGGGATATGCTGAA
AAGCTCGGGGATCATGTGCTTGAGCCAGTAATTGGGATGACATTTGATTCATTGGGCGAGGCGTACGATTTTTATAATTT
GTATTCTTGGGAAAATGGCTTTGGCATCAGATACGCCAAAAGCATGCTTAATGCAGAGAAGACAAAGTGTATGCAGGAAG
TAGTATGTGGATGTGCCGTGAGTTCTTCCACGCTTTATCATTAACGAGCATGAATAAGTTTTGGTTGGATGATGGAAGTT
AATGCTAACAACTAGATGTGTTT-TTTTCCAGGGGAAACCAACTAGGGAGAATAGCAGGTCCTGCCGGTGTGAGTGCCCC
GCGATGATAAGATTGTTGAGAACATCAGACAATGGCTGGTACATAACAGAGCACAGACCAAGTCATAATCATTCAATGAC
GCAGACATGCGGCGAGAAAGTGCATTGGCTGTCACATAAGCACATAGACATGTACACCAAGGATTTGGTGAAGCAGCTAA
GGCAGAATAATGTGAATGTCACAAAGGTGTACAGCATAATTTCAAGTTTTTTCGGGGATGCTGAGAAAGTTCCATTTACT
AAAAGATCACTGCGAAACCTGTGCGGTAAGATTAACAGAGAGCAAGCTGAGGATGATGTCAAGAAGACAATTGATGTCTT
TGCTGAGATAGCAGCTAAAGATCAGGAATTTGTTTTTAGAGTACAACCAGATAACGGCTGTAGGATTAAGAATTTGATGT
GGGCTACAGGCATCAGTAGAAACCAGTACATGTAGTTCGGGGATGTGGTCACATTTGACACAACATACAGGACAAATCTA
TATGACATGCCGTTCGGGTTGTTTGTTGGTGTGAACAACCACTTTCAGAGCATCATATTGGCTGGGGTTCTTCTACAAGA
CGAGCAGGTTGAGAGCTTCGAGTGGGTCTTCAGTGAGTTCGTCAGGATGATGGGAGGGAAGGCTCCCGTAACTATCCTCA
CAGGTATGAGAACAGCTGGCAAAAGTCCTCTGTTTTTTGCATAAAAAATGTTCATTGGAAAGATATAAACATTTTTTTGA
TTATTGTGAATGTTGCTGTTGAGCAATGTGGTTAATCACCAATTGAGGAGAAGCTTGTCCAACATCGTTTGAGATGGTTT
GGGCATATTCAGCGCAGGCCTCCAGAAGCTCCAGTGCATAGCGGACGGCTAAAGCGTGCGGAGAATGTCAAGAGAGGGCG
GGGTCGACCGATTTTGACATGGGAGGAGTCCGTTAAGAGAGACCTGAAGGATTGGAGTATCGACAAAGAGCTAGCTATGG
ACAGGGGTGCGTGGAAGCTTGCTATCCATGTGCCAGAGCCATGAGTTGGTTGCGAGATCTTATGGGTTTCACCTCTAGCC
TACCCCAACTTGCTTGGGACTAAAGGCTTTGTTGTTGTTGTTGTTTGCTGTTGAGCAGATCAATGCAGAGCCATGTAGGT
GGCTTTGAAAAGTGTTCTTCCCTCGACGGCTCACCGGTGGTGCAAATGGCATGTGTTGAAAAAGGTGAAGGAAACTCTTG
GGCCGATGTACACAAAGTAGACAGATTTCCATGATGAGTTCCACAAGGTGGTTAATCACATGCTTACAATTGATGAGTTT
GAGCAAGCCTGGAAGATGTTGATAGAGAAGTACAACCTAGAAAGCCACATCTACCTTTCTCAAGTGTATGAGGTTAGGCA
CAAATGGGCGAAGCCATTTTTCAAGGATGTGTTCTGTGTTAAGATGACCAGCACGCAGCGGAGTGAGAGCGCTAA
>chr1D_1
TTCAGCTGGCCT--GAGGCTGATCAATTCCATTATGTTGTGTGCAATCCCGCTACCCAGGAGTGGGTTTTGCTGCCTCCT
ATAGAATTGGATGACCTTTCGCATATAGGCAAATACTCTTTG--------------------------------------
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----------------------------TGCTTTGACCCAGCCATTCCTTCCCGCTTTATGGTATTTGTGCCCCTGTTCG
CAAAGTATGACCCGCCCGTGCCCGTGGCAATGATCTACTCATCACAAACTGGAGGATGGACTTCCATACAGGGTCAGTGG
GATGACCATTGCGATGAT----CCACGGGTTCTCATAACGCGTTCTTTTGGTGATTCAGAATGCGTCTTCCCGAATGGCA
CTATCCACTTCTATACTCATTTTTCAATAGTCACAGTGGACATGGAGGGGAGTGCTTAGAGGGAAATTAAAATGCCACCT
GCCATGACAGAGGGCTATGAAAATCTTTTCATTGGGAGGTCCCAGGGACACTTGTATGCTTGGCGTACAAATATCCGCCA
ACTCTCTATTTGGGTTCTTGACGATCATGATAGTGGACAATGGACCCTCAAGTGTACTGTTAACTGCTTGGAACTGTTCG
GAAGGGAATGTCGTAAACATGATATCTTCACGATGTTTG-----------------------------------------
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---------------------------------------------------------------------------
>chr1B_1
TTCAGATGGCCTGAGAGGCTGATCAATTCGATTATGTTGTGTGCAATCCCGCTACCCAGGAGTGGATTTTGTTGCCTCCT
ATAGAATTGGATGACCTTTTGCGTATAGGCAAATACTCTTTGGGGAATGGCTATAACGCACGCGCGCGTCAGAGCGCACG
ATTTCGGACTGGGTGCACTTGTTCCAATTAAGTAAGTTTATCAGGGTGTGTTATTGGTAATTAAGGAATGGGCGGGCCCC
ACCCAAGTGAAAATCAGGGGGGCAATTAATTAGGGATGGAAAGGTCCATGTGCATTCACCAGGCGAGGATTAAATGGAAA
GTGGAGTGGACCCAACGTGCATGCAACCATGTGCTGCTTGGACGAGACTTGCCTGCTCCCCGCGTGTGTGCCCATCCGTG
CTCCCGCATACGTGGCATGATTTGATTGAAACAAAATAAGGCCCGGCCCCACCCCCTTAAAATCAGGGGGGAGATGATTA
GATTAGAAAGGAAAAAGGAAAAAAGACAACCGTAGGATGAAGTGGGAGCACGGATGAGAGCACGCGGAGGGAGCAGGCAA
GCCGGATCCGTGCTGCTTGTATCATCAAAGGAGGAGGTGGGGCCACTGTAAATACATGGAAACGGCTGCAGTTATTAAGG
CCCTGTTTGGTTCATAAGTCCTATGACTTTTTTTAGTCCCAACTTATAAGTCCCAAGTCCCTAAAAAGTCCCTACCTGTT
TGGTTCCTGGGACTTAACATGGACTAAATGACCATATCACAACTATAAGTCCCTATAAGACTCTTCTTGAGAGTCTTATT
TCATAAGTCCCAAATGCCCACTTTAAGTCCCTATAAGTCCCTCCTGTTTGGTTTAGATGAGATTTATAGGGAATTTTTTA
AGTCCCTAAACCAATAAGTCCCTGGAAACAAACACCCTCTAATTTGGAAAGAAACATACATGGTCGGGAGTTGATTGGGT
TGCGCGAAGGGGATCTGCGCGTTGGCGCGCGCGATCGTGGAAGAGTCTTTTCGTACTCTTTGGGCATGTTTGGTTGCCCG
CATCGAGCCCAACCAGACCCGCGCGGGAAGGGAGAGGCCTGGTTGGTTGCCTGTTTTCCTGTTGGGCCTGCATCGCACAC
TTCTCAAAGCAGCCCAGAGCCTGGCTCGCTGTAAACGCTCGGATCGGCAGTTTCTCGTGAGTCAGGTTGAGTGCGGCGTG
AGGTCGGACGGGCGGGAGTGAGGCAAGGGCGAGGGGGGATGGCGGGAGATGGAAATCTGGTGCGCCGTCCCGACGCCAAA
TTAGCCTCACCCCCCTTTCACCCGCTCACCCATAGCCACTGCCCTCCTTTCTTCCCTACTTCCTCACCACCGGCGGCTGT
GATTTCAGATCTGCGCTATAGGCGGCGGTGGCGTTTGCGGCGGATCTGGTGCTCCCCTTGCTGTTGGCCACCGTCTAGTC
GACCTAGTCTGTGCCATGGCTCCCCCTACACCGTCCTCGTCTCCGATGCCGGTAGCACACCCTCCCCCCTTTGTTAGCTA
AGTGGTTAGGCCGTTAAGCTAGGTGTAGGATCGATTTCCCACTGAACGAACCGTCGATGTCGACTAGGTTATGGACGCAC
TGATGAGGCTGATAATCCAGGCAGCAGCACTGATTAGTGTGATTCAGGCATGGGTCATGTTCATGCACCAGAGAGCTGTT
CGTCGTGCTGGGAGACCTTTGATCCGCTATGGTCCATTGTTTCCCCGGGAACAAGAGAGGATCCAAAATCTGAACTACAT
CTACAACTGCAATGACTTCGAGGCTCTATGAATGCTTAGAATGAAAAGATCATTGTTTGCCAGGCTTGTCGAGACCTTCA
GGAGCAGGGGGCTGTTACGAGATAGCATCAACACCAGTGTCGGAGAGCAAGTGGCCATGTTCCTCCATGTTGTTGGCCAT
AACCAGAGGTTCAGGGTCATTCACAACACGTTCAGGAGATCAATGGAGACCATCTCTAGGTACTTTAAGCAAGTGCTTTT
TGCTATTAGGGAGCTTAGAGGAGAGATGATCAGGAGACCATCTAGTCAGACTCCACCCAAGATTCGCTGAAGCCCAAGAT
GGTATCCATACTTCAAGGTGAGCATTGGCAATATACACTTTTCATGGCTTGATATGCTTGTATTGTTCAAGTTGAGCACT
AACACAGGCTTGTGATGCCATTTTCAGGATTGCATTGGGGCAATAGATGGTACTCATGTCACTTCCAGAGTTCCTTGGTC
ACAGTCTCCAACATACAGGGGGGGAAGCACTACATAAGCCAGAATGTGCTTGCTGCTGTTGACTTTGATCTGAAGTTCAC
ACATGTGTTGGCTGGCTGGGAGGGGTCAGCGCATGATGCTAACATTCTCACTGACAGCATGAGTCGACCTGATGGGATCA
ACATCTCCGAGGCAAGTTCTACCTTGGAGATGCTGGCTATGCATGTTGGTCGGGTATTCTTCCACCCTTCGAAAAAAATG
TATCATCTCAATGAGTTCTCTGGTAGGAACTATCCTAGGACTGCACATGAGCTGTTTAATCTCAGACACTCCAGCCTTAG
AGTAACTGTTGAGAGGGCATTTGGAGCTCTAAAGAATATGTTTAAGATCCTGGATCAGAAGCCATTCCACCCATACTCCA
CTCAGTTTAAGCTAGTTCTTGCTTGTTGCATTCTACATAACTTGATCCTCCAGTGGGCTTTGATGAACACGTGTCTGAGG
AGGAAGATGTCGAGCCTGACGATGTTGTTAGCTCTGGGCATGGTGTGGAGGCATTTGACAATGACGCTTGGAAGAAGAAA
ATGTTGGAGTGGGCAGAGGCGATGTGGCTTAACAGAGGTCAGTGCAGGATTTGAAGATGGAAGAAGAACAAGAAGCAGCA
GAAGCAGCAGTAGAAGCAGAAGCAGAAGAAGAGGAGCTAGAGGAAGATCTGGTAGCAGCAACACCGATGAACTATCCCTT
ATTTAGCCAATGGCTCTTAATAATTTGAACTGTCATTTGATACTAGTTAGGATGAACTGTCATTTGTTTAAGTAGATGGC
GCTACATGTTCAGATTCAGTGTGGTAAGCTCACCACTAGTTTGAAGTGGTGACAACATCTTATGCAGGTTACAACCAAAC
TCCATGTCATATGTGCGTCTAATGCAATGCGGGCAACCAAACTCCGGGTCGAAAATGGTTGTCGGCATGAAGGGAACCAA
ACTATGTGCATCTGGTGTTTTTTTGGCCTGCATCCCCTCAAACCGGCTCAATAGAGCCAGGCTCGCCGGGCCAGGCTAGA
TCGGCAATGTAACCAAACACGCCCTTTGTGCTTTGACTTAACCATTCCTTCCCACTTTATGGTATTTGTGCCCCTGTTCG
CAAAGTCTGGCC------TGCCCGTGGCAATGATCTACTCATCACAAACTGGAGGATGGACTTCCCTACAGGGTCAGTGG
GATGATCATTGTGATGAT----CCATGGGTTCTCATAAAGCGTTATTTTCATGATTCGGAATGCGTGTTCCTGAATGGCA
CTATGCACTTCTATACTCATTTTTCAATAGTCACAGTGGACATGGAGAGGAGTGCTTGGAGGGAAATTAAAATGACACCT
ACCATGACAGAGGGTTATGATAATCTTTTCATTGGGAGGTCCCAGGGACACTTGTATGCTTGGTGTACAAATATGCGCCA
ACTCTCTATTTGGGTTCTTGACGATCATGATAGTGGACAATGGACCCTCAAATGTGCTATTAACTTCTTGGAACTGTTCG
GAAGGGATCATCGTAATGATGATGTCTTCACGATGTTTG-----------------------------------------
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>chr1D_720
TATTGG--------------------------------------------------------------------------
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-------------------------------------------------------------------------CATAAGG
TACGTGTACGTGGGTTGTCAGATGGACGGTCGTTTGCAGGCGTCCAGCGGCCGTTAACGGACTGCAGCCGAGGCCGTTTG
AGGCGACGCTGACGACGTTGGCATCTGTACTGAGCTGGACCCACCTGGCGGTCTTGGTACACATGGACGGGGCAGCTCGA
CCACAAAGGGTTTGCCCCTGGAGTGGGGTTGGGGATCG---AAAAAACAGAGGGGTGGGTTGCTGCATCTGCGGCGGCGG
T--------GCCGGCGGAGCCGTTTGGCAATGGATTTCCCAGTTTCTCCTGTCGACAAGTAAG-TTTTTGATTTATTCGT
TCTGAGGCTTAGATTGAAGTTGCTAGTGGTTATCACCTCCGCTGATTGTTAGCAGATTGCCAATCTTTCCAGATGAAGCA
TCTAGCGCGGCGGCGCTGCTGGAGATGAGCGGGCGCGCTGCAGAGCACTCCGGCGACGGATCTCGTGGGGCCGTCCTATG
CGGGGCAGCGAGGACCTCTACTGGCAATCCCTGACACTTTTTGGGCGAAGAATCAAGTGTTGGCGCGATTGGAGGAGGTA
TGCCCTGTTTCAGCGAGAGTGAAGGTGACAACGCCGATGCAATCGAGGATGAGGAGCAGAAAGATGCTGCAATGGGAGAA
ATTGGTGAAGGCGACAATGCTG-----------------------------------GCTCCAGGATGGACAAAAAGGCA
TTTCATTTTCAGAACTGTGCGTGCCCCATGCCTGAAAGTATCTTGTTATC-TGAAATGAAAAAGATTCGACAGTATTTTT
CAGTAAGCAGACATGAAAAATCG-TTTCCGGTTTGTTGCATGTATTGCTGTGTTTAGACGATTA-GGATGTTTAGTTGGT
GAATTTAGTTTGCGTCATCCCCGATGATACTTTTGTTGTTGTGCTCATATGAACAAACTGCAATGCCTACAGGGTAAGAG
TTGGGAATCAGCCGTTGGATAGAGTGTCATGTCCTGAAAGAGTTGGGGCACTAGAGCAAACAATCAGGGAATATGCTGAG
AAGCTTGGGGATCATGTAGTTGAGCCAACAATTGGGATGGCATTTGATTCATTGGGCGAGGCATATGATTTTTATAACTT
GTATTCCTGGGAAAATGGCTTTGGCATAAGATACGGCAAAAGCAGGCTTAATGCAGAGAAGACAAAGTGTATGCAGGAAG
TAGTCTGTGGATGTTCAGTGAGTTCTTTCACTCTTTAACATAAACGAGCATGGATTAGTTC-GGGTGGATGGTGGAAATT
CCTGCTGACAACTTGATGTGTGTGTTTTTCAGGGGAAACCACG-AGGGAGAACAGCGGGTCCTGCAGGTGTGAGTGCCCC
GCGATGATAAGATTATTGAGAACATCCGACAATGGCTGGTACATAACAGAGCACAGGCCAAATCATAATCATTCATTGAT
GCAGACATGCGGCGAGAAAGTGCATTGGCCGTCGCACAAGCACATAGACATGTACACCAAGGATTTGGTGAAGCAGCTAA
GGCAGAACAATGTCAATGTCACAAAGGTGTACATCATAATATCAAGTTTTTTCAGGGATGCTGAGAAGGTTCCATTTACT
AAAAGATCACTGCCAAACCTGTGCGGTAAGATTAACAGAGAGCAAGCTGAGGATGATGTGAGGAAGACAATTGATGTCTT
CGCTGAGATAGCAGCTAAAGATCAGGAATTTGTTTTCAGAGTACAACCAGATAAAGGCTGTAGAATTAAGAATCTGATGT
GGGCTACAGGCAGCAGTAGAAACCAATACATGTACTTCGGGGATGTCGTTACATTTGACACAGCATATAGGACAAATCTG
TATGACATGCCGTTTGGGTTGTTTGTTGGTGTGAACAACCACTTTCAGAGCATCATACTGGCTGGGGTGCTTCTACGAGA
CGAGCAGGTTGAGAGCTTCGAGTGGGTCTTCACTGAGTTCGTCAGGATGATGGGAGGGAAGGCTCCAGTAACTATCCTCA
CAGGTATGAACAGCTGG---AAAAGTTCTCTGTTTTTTGCATCCGACG-GTTGATTGAAATGATCTAAGA--TTTTTTGG
TTGTTGTGATTGTTGCTGTTGAGCAT------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------ATCAATGCAGAGCCATGGAGGT
GGCTTTGAAAAATGTACTCCCCTCGATGGCTCACCAATGGTGCAAATGGCATGTGTTGAAGAAGGTGAAGGAAACTCTTG
GGCCGATGTACACGAAGCAGACAGATTTCCGTGACGAGTTCCACAAGGTTGTTAACCACATGCTTACAATTGATGAGTTT
GAGCAAGCCTGGAAGATGTTGATAGAGAAGTACAACCTAGAAAGCCACAGCTACCTTTCTCAAGTGTATGAGGTTAGGCA
CAAATGGGCGAAGCCATTTTTCAAGGATGTGTTCTGTGCTAAGATGACAAGCACGCAGCAAAGTGAGAGTGCTAA
>SNPs
------------------------------------S---------------S---------------------------
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-----------------------------------------------------------------S--------------
------------S----S--------------------------------------------------------------
------------------SSSS---------------------------S-----------S------S-----------
----------S------------------------------------------S-------------------------S
---------S---------SS-----------------------------------------------------------
------S-------------------------------------------------------------------------
---------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------
--S--------S---S---------------------S---------S--------------------------------
-----S--S------S-------S----------------------------S----------------S------S-S-
---------------------S----------------SSS---------------------------------------
-SSSSSSSS----------------S--------------S-----------S----------S----------------
-----------------SS---------------S-----------------------------------------S---
--------------------S------S---------S------S-S-S-------S--------------S-----S--
----------S--------S---SS--SS--S-S-SS----------------------------S-S--------SS--
------S------------S-----S--------S---------S-------------------S---------------
----------S----S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------S-
-S----------------SS----S-SS--------------S-S--SS-S------------S--S---------S---
--S--------S--------SSSS-----SS------------------SS---S-----S-SSS-------------S-
SS--------------S--SSS----S----S-------------S--SSS--S-SSS----------------------
-------------------------S-----------S-----S--------S----------------S---------S
-----S-----------SS--------SS----------S----------------------S--S-----------S--
------S--------------------S-------S--------S-----------------------------------
----S---------S-S----------S---S-----S---S----------S--S----SS--S------S-----S--
SS----S------S-------S------S------------SSS--------S---S--------S--------------
--------------S-----------S-----------------------------S----S-------------S---S
-----------------------------S---S--S-------------------------------------------
-------S-----S-------------------S------S------------S-------------S------------
-------------S---------------------------------------------S-S------------------
S-----------------------------------S-----------------S--------S---------S------
------------S------------S--------S-----------S--S------------S----S-----------S
--------------S------------------------------------------S----------S-------S---
--------------------------------S---------------------------------S-------------
---------SS-SSSSSSSS------S---------------SSS-SSS---S----S--S---S---SSSS-------S
--S------S---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------S----
-----------S---S--S-------S--------SS-----------------------S-------------------
-------------S---S------------S---S--------------S-----S------------------------
-------------------------------------------------S------------------------------
--------------------------------------S---------S----------SS--------S-----
>forward_3856
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----------------------------------------------------------------------------CTAT
CAGCGCCGTCCAGAAA----------------------------------------------------------------
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>reverse_5125
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----ATGTGGATGTGCCGTGAGTT--------------------------------------------------------
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>forward_4785
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------TGCTTGGTTCAGACGCTAGG---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------
>reverse_6128
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------GCTAAAGCGTGCGGAGAATG-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------
