>input_sequence_49228
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--------------------------------------------ATGGGCCGCAAGAGCCGCCAGCCGTCGCCGCCGCCG
CCCCCGCCTCCCGAGGAGGAGTCTTCCGCC------------------------GAGGAGGAGGAGGAGGAGGCGGCGGC
GGAGGCCACCCCCGCGACCCAAAATTCCCCCAAACCCCCTTCCGCCGCCACGGCCGACGACGCCGAGGCCGACGCCGATT
CGTCGGATGGAAGCGATGAGGAGTCCTCCGAGTCGGGGAAGATCGACGCCGAGGCCTTCGAGCTGCGCCAGATCGCCTCC
TCCAA------------------------GCTCGAATCCGACGCCGGTGAGCCCACTCCGCCGGCCAAGGACAAGAAGAA
GGGTAGGTCTTTGGCG---------------GAGCCCTCTCCGTCCGGCACGGCCAAGAAGGCTAAGGCCGGGGTGGCGG
AGAAGGCACTCTCCGAGCTCACTCCTTCCAGCGAGGGTAAGAAGAAGCGCAAGGCCCAGCCGGAGAAGACTGCGCCGTGG
AACAAGCTTGAGAAACCTGGACATCCCAGGCGCTGGACAACGGAGGACGAGATCAAGATCCTGGAGGCTCTGGTTCGCCA
CGTCAAGGCCAATGGCACCCAGCCGGGCGCTCGTGAGCTCATTGCTGCGGTTGGTGGCAGCCTGGAAAGGAAGAACGTCA
CCAAGACGGAAATGTATGAGAAGGTGCGGAATATCAGGCAGCGATATGAGAAAGCGGTGAGCACAGGCGCTCTGCCAGAG
AAAGATGATGACCTCCGCAAGTTCAAGCTCTCGGAGCAAGTCTGGGGAGAGAATGCAAAGCAGGTCGCTGCAGCCACCAT
GGCTCAAAATGAGGCTGCTTCCTTGAAGGGCAAGAAGAAGGAGCAGACTAGCAAGGAGAAAACAGAGGGACATTCAAAGG
GTGGTACAGCAAAGGAGGTCACCGCTAGCGCCGATGAAACAGAGGGCTATTCAAAGGGTGGTACAGCAAAGCAGGCCACC
GATGAGAAGGTTGAAGAAGATAGCAAGGGCAGGTCATCAAAGAAGGCTAGCACTGCTGATACTCCTGCTAAGAGTAGAAA
GCGGGGAAACCACAAAGAGGAATTGGAAGGCGATGCAAAAACTGGCACTACAAAGGAGACCGTGGATACTACCACTCAAA
ATGGTGGCACTTTGGTGAGGAGCAAGAGTGGAAAGTCTGACAAAGAGAAAGCAGATGGAGATGCAGAGAGCCCCATGCCA
AAGGAGGCTATGGCTGACGCTAAAAATGGTGGCACCCTTGCTCTGTTTAAGAAGGAAGGGAAAACTCATGAAGAGAAAAT
GGACACTGATGCTAATGCGAGAGGCACGCGCAAAGGGTTTGAGGAATTGCAGAAATTCTACCCCAACCTTACCTCTTATG
TGGAGGACATCCAGGCCCAACATCCATGTGGGGAGACACTGAAGAGAGCATTTGAGTTCATTCCTGATGAGAAGGCATGT
GCATTGGAATCCAAGATCAAGAGGCAAAGAGTAGCTGAGTTGAGGATGGAGATGCGCCGATCTGACACAAAGAAGGAAGT
GACCAACATATTCATAGGATTGCTGGACTAA-------------------------------------------------
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------------------
>chr3D_1_TraesCS3D01G037800
TCGTCGTGCATCCTGTGCTACCTATCATACACCGGCGCAAAGCGCTGACCCACCACACATTCCCGTGCCCCTGAACAACT
TCGCCGCTGTGCCATGAATCCCCAACACCACCGTGCCGTGCTACCGCTGCAGCAAAATCAACCGAATGAGATGTGCAAAA
CGCTACAGCAAAATCGCCCATGTGAGGAGATTTGGCGCCGTTCGAACCCTAGGAATCCTTCCCTTACAGTCCGCCACCAC
CCGTGCAAAACACAAACGACCTTGTCCCCCGCCGAGACAGAGAGAGGGAGGAGAAGTAGTGGGGTACCTGCGACGCCGAC
GAGGACCAACGATTCCTCGCGGAGAGGCACCCGCAGTCCCGCCGCCGATTTGAGAACTCCGCCGCGCCTCCCC-TGCATC
ACGGCCGACATGGTGAGCGGTCGGTTCCCCAACGAGACAGAGAGAGGGAGGAGAAGCAGTGGAGTACCTGCGAGGCGGAC
CCGCCGCCGATTTGGGAACTCCGCTGCGCCTCCCCTCTGTCACGGCCCGTTCGGTGGAGATGAATCGAGAAGGAGAGGGG
AGAAATGGGGGGGAGAGCAACGATGAGGAGAGATTTCGGGCTGCAGTTTCGAAACAGCCGGCCACGAACGAGGATAGAAC
CACCCACGACCCACGGCTGAACCGATCCCGACCAGGCGGCACCTGGCGCACGAGCGAGACGATGGCTGCCCGATCACGCG
GCCAGGAAGCGGCCGCTCGGTTCGCCCAGAAAGTTCGCGTGCACTTTTTAGATTTCGGGTTTCGAAAAACAAAAGCTAAA
AAAAACAATCGGCAGCATTTCCTAAAAGAAAACAACGTGGCGTAGGGCCTACGCGAAATTCCGTTCATGCCCTCAATGCT
CCAACAAATTCACAGCGCAGCC-ACCGCGTCGCTGCCGTCTCCTCTTTTCCACTCCCACCCAACA--CCCACCCCGCTCG
CCGCCCTCTCCGCCGCTCCCGCTCCCGAAACCCTAGCGGCGAGGATGGGCCGCAAGAGCCGCCAGCCGTCGCCGCCGCCG
CCCCCGCCTCCCGAGGAGGAGTCTTCCGCC------------------------GAGGAGGAGGAGGAGGAGGCGGCGGC
GGAGGCCACCCCCGCGACCCAAAATTCCCCCAAACCCCCTTCCGCCGCCACGGCCGACGACGCCGAGGCCGACGCCGATT
CGTCGGATGGAAGCGATGAGGAGTCCTCCGAGTCGGGGAAGATCGACGCCGAGGCCTTCGAGCTGCGCCAGATCGCCTCC
TCCAA------------------------GCTCGAATCCGACGCCGGTGAGCCCACTCCGCCGGCCAAGGACAAGAAGAA
GGGTAGGTCTTTGGCG---------------GAGCCCTCTCCGTCCGGCACGGCCAAGAAGGCTAAGGCCGGGGTGGCGG
AGAAGGCACTCTCCGAGCTCACTCCTTCCAGCGAGGGTAAGAAGAAGCGCAAGGCCCAGCCGGAGAAGACTGCGCCGTGG
AACAAGCTTGAGAAACCTGGACATCCCAGGCGCTGGACAACGGAGGACGAGATCAAGATCCTGGAGGCTCTGGTTCGCCA
CGTCAAGGCCAATGGCACCCAGCCGGGCGCTCGTGAGCTCATTGCTGCGGTTGGTGGCAGCCTGGAAAGGAAGAACGTCA
CCAAGACGGAAATGTATGAGAAGGTGCGGAATATCAGGCAGCGATATGAGAAAGCGGTGAGCACAGGCGCTCTGCCAGAG
AAAGATGATGACCTCCGCAAGTTCAAGCTCTCGGAGCAAGTCTGGGGAGAGAATGCAAAGCAGGTCGCTGCAGCCACCAT
GGCTCAAAATGAGGCTGCTTCCTTGAAGGGCAAGAAGAAGGAGCAGACTAGCAAGGAGAAAACAGAGGGACATTCAAAGG
GTGGTACAGCAAAGGAGGTCACCGCTAGCGCCGATGAAACAGAGGGCTATTCAAAGGGTGGTACAGCAAAGCAGGCCACC
GATGAGAAGGTTGAAGAAGATAGCAAGGGCAGGTCATCAAAGAAGGCTAGCACTGCTGATACTCCTGCTAAGAGTAGAAA
GCGGGGAAACCACAAAGAGGAATTGGAAGGCGATGCAAAAACTGGCACTACAAAGGAGACCGTGGATACTACCACTCAAA
ATGGTGGCACTTTGGTGAGGAGCAAGAGTGGAAAGTCTGACAAAGAGAAAGCAGATGGAGATGCAGAGAGCCCCATGCCA
AAGGAGGCTATGGCTGACGCTAAAAATGGTGGCACCCTTGCTCTGTTTAAGAAGGAAGGGAAAACTCATGAAGAGAAAAT
GGACACTGATGCTAATGCGAGAGGCACGCGCAAAGGGTTTGAGGAATTGCAGAAATTCTACCCCAACCTTACCTCTTATG
TGGAGGACATCCAGGCCCAACATCCATGTGGGGAGACACTGAAGAGAGCATTTGAGTTCATTCCTGATGAGAAGGCATGT
GCATTGGAATCCAAGATCAAGAGGCAAAGAGTAGCTGAGTTGAGGATGGAGATGCGCCGATCTGACACAAAGAAGGAAGT
GACCAACATATTCATAGGATTGCTGGACTAAACCCTTCTGTTGTTGTCAACCCATTTACGCGGTATACCACTCTGCTTAC
TCCTGTGTTATTATGTTTTATCGTGATGATATATTGAAGATTTTTATATAGCTCAATGTGATGCATCCTACTTCTCTAGT
TTACTTT----AAGTCTAGCTTTATATATCTGCAATCCAAATTCCACCCACC---CAAAAAGGTTAGGAAGATTAGGCGG
ATGCAGGTGAGTTGGACGTTTGGTTGGACATATATCCAGTGTAATTTTGGGCAGGTAGTGAGGCCCTGTGAATCCGTGGC
AACTGAAAGTCTGAAACAAGGGCCAAGGGACATGAGATGGATTATCCA---CTCATTTCTTATGCTTC--------TATT
CAAGTATGGTTCCACTGTATTTAGATACTCAGTTT-TTCTGCAGTATTGACTTGTTAATCTTCCTGCAATTATTATGTCG
GTTACTGTTATTGTATTGTGGGTGTCAAAATATTATTCAGGATGAAACTGCTGGTGTCTTTGATTGTTACTGTAGAGTTT
CTAGTCATTTTAGTGACTTGCATTTAGGATGAAACTGCTGGTGTCTTTGATTGTTACTGTAGAGTTTCTAGTCATTTTAG
TGACTTGCATGTAACCTTATATCTCAGTTTTCAAGCAACTTATAAAGTTATATAAGACTACGGTCGATTAGTTAAGTGAA
TTTAATATCGTGTTGACAGG----TTTTTTTGGTAACACTGTGTTTTGGAC----AACAGTACATAGTTTCAGGAAACTG
TAATCTTTCTTAGAGATCATTTTCTGTTGCTTCCCCTTTTGTATCCTAGAAAGAACAACTGTTGCATTTTAGTTCATGTT
AGCCTCTAATTCTTAGGTCCGACATTTGACATGTCGTGCCTTGCGGAAAAAGGGCTGATTTCCTGAAAGTCAGCAGACAT
GCAAATTCAGTTGGAAGTTCTAATCACAGAGAATGCTAAAGTATGGTGTCTTAATACCTGAAAGGCCGAAATTGTGTTGG
GAGGTTCATTGCAGAGAT
>chr6B_1
TCGTCGTGCATCCTGTGCTACCTGTCATACACCGGCGCAAAGCGCTGACCCACCACACATTCCCGTGCCCCTGAACAACT
TCCCCGTTGTGCCATGAATCCCGAACACCGCCGTGCCGTGCTACCGCTACAGCAAAATCAACCGAATGAGATGTGCAAAA
TGCTACAGCAAAATCGCCCATGTGAGGAGATTTGGCGCAGTTCGAACCCTAGGAATCCTTCCCTCACAGTCTGCCACCAC
CGGCGCAAAACACAAACGACCTTGTCCCCCGCCGAGACAGAGAGAGGGAGTAGAAGTAGTGGGGTACCTGCGACACCGAC
GAGGACCAACGATTCCTCACGGAGAGGCACCCACAGTCCCGCCGCCGACTTGAGAACTCCGTCGCACCTCCCC-TGCATC
ACGGCCGGCACGGTGAGCGGTCGGTTCCCCAACGAGACAGAGAGAGGGAGGAGAAGCAGTGGAGTACCTGCCACGCGGAC
CCGTCGCCGATTTAGGAACTCCGCTGCGCCTCCCCTCTGTCGCGTCCCATTCGGTGGAGATGAATCGAGAAGGAGAGGGG
AGAAATGGGGGG-AGAGCAACGACGAGGAGAGATTTCAGCCTGCACTTTCGAAACAGCCGCCCACGAACAAGGATAGAAC
CACCCACGACCCGCGGCAGAACCGATCCCGACCAGGCGGCACCTGGCGCACGAGCGAGGCGATCGCTGCCCGATCGTGCA
GCCAGGAAGCGGCCGCTCGGTTCGCCCAGAAAGTGCGCGTGCACTTTTTAGATTTCAGGTTT------------------
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------------------
>chr1A_1
TCGTCATGCATCCTGTGCTACCAATCATACACTGGCGCAAAGCGCTGACCCACCACACATTCTCGTGCCCCTGCACAACT
TCCCCGCTGTGCCATGAATCTCGAACACCGCCGTGCTGTGCTACCGCTATAGCAAAATCAACCGAATGAGATGTGCAAAA
TGCTACAGCAAAATCGCCCATGTGAGGGGATTTGGCGCAGTTCGAACCCTAGGAATCCTTCCCTCACAGTCCGCCACCAC
CCGTGCAAAACACAAACGACCTTGTCCCCCGCCGAGATAGAGAGAGGGAGGAGAAGTAGTAGGGTACCTGCCATGCCGAT
GAGGACCAATGATTCCTCGCGGAGAGGCACCCACAGTCCCGCCCCCGATTTGAGAACTCCGTCGCGCCT-CCC-TGCATC
ACGGCCAACACGGTGAGCGGTCGGTTCCCCAACGAGACAGAGAGAGGGAGGAGAAGCAGTGGAGTACCTGCGACGCGGAC
CCGCCGCCGATTTAGGAACTCTGCTGCACCGCCCCTCTATCGCGGCCCGTTCGGTGGAGATGAATCGAGAAGGAGAGGGA
AGAAATGGGGGG-AGAGGAACAACAAGGAGAGATTTCAGGCTGCAGTTTCGAAAGAGCCACCCACGAATGAGGATAGAAC
CACCTACGACCCGCGGCAGAACTAATCCCGACCAGGCGGCACCTGGCGCACGAGCGAGACGATCGCTGCCCGATCGTGCG
GCCAGGAAGCGGCCGCTCGGTTCGCCCAGAAAGTGCGCGTGCACTTTTTAGATTTCAGGG--------------------
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------------------
>chr3D_178
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------CCATGTGAGGAGATTTGGCGCAGTTCGAACCCTAGGAATCCTTCCCTCACAGTCCGCCACCAC
CGGCGCAAAACACAAACGACCTTGTCCCCCGCCGAGACAGAGAGAGGGAGGAGAAGTAGTGGGGTACCTGCGACGCCGAC
GAGGACCAACGATTCCTCGCGGAGAGGCACCCGCAGTCCCGCCGCCGATTTGAGAACTCCGTCGTGCCT-CCCCTGCATC
ACGGCCGGCACGGTGAGCGGTCGGTTCCCCAACGAGACAGAGAGAGGGAGGAGAAGAAGTGGAGTACCTGCGACGCGGAC
CCGCCGCTGATTTGGGAACTCCGCTGCGCCTCCCCTCTGTCGCGTCCCGTTCGGTGGATATGAATCGAGAAGGAGAGGGG
AGAAATGGGGGG-AGAGCAACGACGAGGAGAGATTTCAGGCTGCAGTTTCGAAACAGCCGCCCACGAACGAGGATAGAAC
CACCCATGACCCGCGGCAGAACCGGTCCCGACCAGGCGGCACCTGGCGCACGAGCGAGACGATCGCTGCCCGATCGTGCG
GCCAGGAAGCGGCCGCTCGGTTCGCCCAGAAAGTGCGCGTGCACTTTTTAGATTTCAGGT--------------------
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------------------
>chr3B_781
TCGAAAAAAGAAACT-----------------------------------------------------------------
--------------------------------------------------------------------------------
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AAAAAAAATCGGCAGCATTTCCTAAAAGGAAACAACGTGGCGTA-GGCCTACGCGAAATTCCGTTCATGCCCTCAATAAT
CTAACGAATTCACAGCGCAGCCCACCGCGTCGCTGCCGTCTCCTCTTTTCCACTCCCACCCAACACCCCCACCCTGCTCG
CCGCCCTCTCCGCCGCTCCCGCTCCCGAAACCCTAGCGGCGAGGATGGGCCGCAAGCGCCGCCAGCCGTCACCGCCGCCG
CCTCCGCCTCCGGAGGAGGATTCTTCCGCCGAGGAGTCCAGCTCCGCCGAGGAGGAGGAGGAGGAGGAGGAGGAGGCGGC
GGAGGCCACCCCCGCGACCCAAAATTCCCCCAAGCCCCCTTCCGCCGCCGCGGACGACGACGCCGAGGCCGACGCCGATT
CGTCGGACGGAAGCGACGAGGAGTCCTCCGAGTCAGGCAAGATCGACGCCGAGGCCTTCGAGCTGCGCCAGATCGCCTCC
TCCAACCCGCCGCCGGCTGCGGCTTCCAAGCCCGAATCCGACGACCAGGAGCCCACTCCGCCGGGCAAGGACAAGAAGAA
GCGCAAGGCCGGGGCGGAGAAGGTGGCGCCTGAGCCCTCTCCGTCCGGCAAGGCCAAGA---------------------
AGAAGGCACTCTCCGAGCTCACTCCTTCCAGCGAGGGGAAGAAGAAGCACAAGGCCCAGCCGGAGAAGACTGCGCCGTGG
AACAAGCTTGAGAAACCTGGACAGCCCAGGCGCTGGACAGTCGAGGACGAGCTCAAGATCCTGGAGGCTCTTGTTCGCCA
CGTCAAGGCCAATGGCACCCAGCCGGGCGCTGGTGAGCTTATTGCCGTGGTTGGTGGCAGCCTCGAGAGGAAGAACTGCA
CCAAGACGGAAATGTATGAGAAGGTGCGGAACATCAGGCAGCGGTATGAGAAAGCGGTGAGCACAGGCGCTCTGCCAGAG
AAAGATGATGACCTCCGCAAGTTCAAGCTCTCGGAGCAAGTCTGGGGAGCAAATGCAAAGCAGGTGGCTGCAGCCACCAT
GGCTCAAAATGAGGCTGCTTCCTTAAAGAGCAAGAAGAAGGGGCAGACTAGCAAGGAGAAAACAGAGGGCCATTCAAAGG
GTGGTGCAGCAAAGGAGGCAACCGCTAGCGCCGATGAAACAGAGGGCTATTCAAAGGGTGCTACAGCAAAGCAGGCCACC
GAAGAGAAGGTAGAAGAAGATGGCAAGGGCAGGTCATCAAAGAAGGCCAGCACTGCTGATACTCCTGCTAAGAGTAGAAA
GCGGGGAAACCACAATGAGGAATTGGAAGGCGATGCAAAAACTGCCACTACAAAGGAGACCGTGGATACTACCACTCAAA
ATGGTGGCACTTTGGTGAGGAGCAAGAGTGGAAAGTCTGACAAAGAGAAAGCGGATGGAGATGCTGAGAGCCCCACACCA
ACGGAGGATATGGCTGACGCTCAAAATGGTGGCACCCTTGCTCTGTATAAGACGGAAGGGGAAGCTCATGAAGAGAAAAT
GGACACAGATGCTAATGTGAAAGGCACGCGCAAAGGGTTTGAGGAATTGCAGAAATTGTACCCCAACCTTACCTCTTATG
TGGAGGACATCCAGGCCCAGCATCCATGTGGGGAGACACTGAAGAGAGCATTTGAGTTCATTCCTGATGAGAAGGCATGT
ACTTTGGAATCCAAGATCAAGAAGCAAAGAGTAGCTGAGTTGAGGATGGAGATGCGCCGATCTGACACAAAGAAGGAGGT
GACCAACATATTCATAGGATTGCTGGACTAAACCCTTCTGTTGTTGTCAACCCATTTATGCGGTATACCATTCTACTTAC
TCCTGTGTTATTATGTTTTATCGTGATGATATATTGAAGATTTTTATATAACTCAATGTGATGCATCTTACTTCTCTAGT
TTACTTC----AAGTCTAGCTTTATATATCTGCAA-CCAAATTCCACCCACCACCCTAAAAGATTAGAAAGATTAGGCGG
ATGCAGGTGAGTTGGAAGTTTGGTTGGACATATATCCAGTATAATTTTGTGCAGGCAGCGAGGCACCGTGAATTCATGGC
AACTGAAAGTCTGAAACAAGGGCCAACGGACATGAGATGGATTATATGCATCTCATGTCTTATGCTTA--------TATT
CAATAATGGTTCCACCGTATTTAGATACACAGCTT-TTTTGCAGTACTGACTTGTAAATCTTCCTGCAATTATTGTGTCG
GTTACTGTTATTGTATTGTGGCTGTCAAAATATTGTTCAGGATTAAACTGCTGGTTTCTTTGATTGTTACTGTAG-----
--------------------------------------------------------------AGTTTGTAGTCATTTTAG
TGACTTACATTTAACCTTATGTGTCAGTTTTCAAGCAACTTATAAAGTTATATAAGACAACGATTGACTAGTTAACTGAC
TTTAATATCGTGTTGACAAC----TTTTTTTGGTAACACGGCGTTTTGGACAAAGAACAGTACATAGTTTCAGGAAACTG
TCATCTCTCTTAGAGATCATTTTTTGTTGCTTCCCCTTCAGTGTCCTAGAAAGAACAACTGTTGCATTTTTGTTCATGTT
GGCATGTAGTTCTGAGGTCTGACATTTGACATGTCAAGTCTTGCTCAAAAAGGGCTGATTTCCTGAAAGTCAGCAGATAT
GCAAATTCAGTTGGAAGTTCTGACCACAGAGAATGACAAAGTATGGTGTGTTACAACCTGAAAGGCTGAAATTGTGCTG-
------------------
>chr3A_797
AAG-----------------------------------------------------------------------------
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AAAAACAATCGGCAGCATTTCCTAAAAGAAAACAACGTGGCGTA-GGCCTACGCGAAATTCCGTTCATGCCCTCAATAAT
CTAACGAATTCACAGCGCAGCC-ACCGCGTCGCTGCCGTCTCCTCTTTTCCACTTCCACCCAACA--CCCACCCCTGCT-
----------CGCCGCTCCTGCCCCCGAAACCCTAGCGGCGAGGATGGGCCGCAAGCGCCGCCAGCCGTCGCCGCCGCCG
CCCCCGCCTCCGGAGGAGGAGTCTTCCGCCGACGAGTCCAGCTCGGC---GGAGGAGGAGGAGGAGGAGGAGGAGGAGGC
GGAGGCCACCCCCGCGACCCAAAATTCCCCCAAACCCCCTTCCGCCGCCACGGCCGACGACGCCGAGGCCGACGCCGATT
CGTCGGATGAAAGTGACGAGGAGTCCTCCGAGTCGGGCAAGATCGACGCCGAGGCCTTCGAGCTGCGCCAGATCGCCTCC
TCCAA------------------------GCTCGAATCCGACGCCGGTGAGCCCACGCCGCCGGCCAAGGACAAGAAGAA
GGGTAAGTCTTTGGCG---------------GAGCCCTCTCCGTCCGGCACGGCCAAGAAGGCAAAGGCCGGGGCGGCGG
AGAAGGCACTCTCCGAGCTCACTCCTGCCAGCGAGGGTAAGAAGAAGCACAAGGCCCAGCCGGAGAAGACTGGGCCGTGG
ACCAAGCTTGAGAAACCCGGACAGCCCAGGCGCTGGACTACTGAGGACGAGATCAAGATCCTGGAGGCTCTTGTTCGCCA
CGTCAAGGCCAATGGCACCCAGCCGGGCGCTCGTGAGCTTATTACTGCGGTTGGTGCCAGCCTCGAAAGGAAGAACGTCA
CCAAGACGGAAATGTATGAGAAGGTGCGGAATATCAGGCAGCGATATGAGAAAGCGGTGAGCACGGGCGCTCTGCCAGAG
AAAGATGATGACCTCCGCAAGTTCAAGCTCTCGGAGCAAGTGTGGGGAGAGAATGCAAAGCAGATCGCTGCAGCCACCAT
GGCTCAAAATGAGGCTGCTTCCTCAAAGAGCAAGAAGAAGGGGCAGACTAGCAAGGAGAAAACAGAGGGCTATTCAAAGG
GTGGTACAGCAAAGGAGACCACTGCTAGCGCCGATGAAACAGAGGGCTATTCAAAGAGTGGTACAGCAAAGCAGGCCACC
AAAGAGAAGGCAGACGAAGATAGCAAGGGCGGGTCATCAAAGAAGGCTAGCACTGCTGATACTCCTGCTAAGAGTAGAAA
GCGGGGAAACCAAAAGGAGGAATTGGAAGGCGATGTGAAAACTGGCACTACAAAGGAGACCGTGGATACTACCGCTCGGA
ATGGTGGAACTTCGGTGAGGAGCAAGGGTGTAAAGTCTGACAAAGAGAAAACGGATGAAGATGTAGAGAACCCCACGCCA
AAGGAGGCTATGGGTGATGCTCAAAATGGTGGCACCCATGCTCTGTTTAAGAAGGAAGGGGAAACTCATGAAGAGAAAAT
GGACACTGATGCTAATGTGAGAGGCATGCACAAAGGGTTTGATGAATTGCAGAAATTGTACCCCAACCTTACCTCTTATG
TGGAGGACATCCAGGCCCAACATCCATGTGGGGAGACACTGAAGAGAGCATTTGAGTTCATGGACGACGAGAAGGCATGT
GCTTTAGAATCCAAGATCAAGAAGCAAAGGGTAGCTGAGTTGAGGATAGGGATGCGCCGTGCTGACACAAATAAGGAGGT
GACCAACATATTCATAGGACTGCTGGACTAAACCCTTCTGTTGCTGTCAAGCCATTTATGCGGTATATCATTCTACTTAC
GCCTGTGCTATTATGTCGTATCATGATGATATATCGAAGATTTTTATATAACTCAATGTGAAGCATCCTACTTATCTAGT
TTACTTTAAGTAAGTCTAGCTTTATATATCTGCAGTCCAAATTCCACCCACC---CTAAAAGGTTAGAAAGATTAGGCGG
ATGCAGGTGAGTTGGACGTTTGGTTGGACATATATCCAGTGTAATTTTGTACCGGCAGTGAGGCCCTGTGAATTTGTGGC
TACTGAAAGTCTGAAACAAGGGCCAAGGGACACGAGATGGATTAT--GCATCTCATATCTTATGCTTCTATAGTTCTATT
TAAATATGGCTGCATCGTATTTAGATACACAGTTTCTTTTGCAGTACTAACTTGTAAATCTTCCTGCAATTATTGTGTCG
GTTACTGTTATTGTATTGTGGCTGTCAAAATATTGTTCAGGATCAAACTGCTGGTGTCTTTGATTGTTAGT-TAG-----
--------------------------------------------------------------ACTTTCTAGTCATTTTAG
TTACTTACATTTAACCTTATGTCTCAGTTTTCAAGCAACTTATAAAGTTATATAAG-------TCGATTAGTTAAGTGAA
TTTAATATCGTGTTGACAACGTTTTTTTTTCGGTAACACTGTGTTTTGGAC----AGCAGTACATAGTTTCAGGAAACTG
TAATCTCTCTTAGAGATCATTTTTTGTTGCTTCCCCTTCAGCATCCTAGAAAGTACAACTGTTGCATTTTTGTTCATGTT
-------AGTTCTTAGATCTGGCATTTGACATGTCGTGTCTTGCGGAAAAAGGGCTGATTTCCTGAAAGTCAGCAGACAT
GCAAATTCAGTTGGAAGTTCGGACTACAGAGAATGCTAAAGTATGGTGTCTTAATACCTGAAAGGCTGAAATTGTGTTGG
GAGGTTCATTGTAGAGAT
>SNPs
--------------------------------------------------------------------------------
--S-------------------S------S------------------S-------------------------------
S-------------------------------------S-------------------------S---------------
--------------------------------------------------------------------------------
-------------------------------------------------------------S------------------
----------S--------------------------------------------------------------S------
-----------------------------------------S--------------------------------------
------------S----------S-------------S----------------------S-------------------
------------S----S---------------------------------------------S-----------SS---
----------------------------------S---------------------S-----SSSSSSSSSSSSSSSSSS
--------------------------------------------S--------------------------------SS-
-S---S--------------------------------------------------------------------------
--------------------------------------------------------S-----------------------
-----------S-------------------------------------------------------------S------
--------------------------------------------------------------------------------
----------------S--------------------S------------------------------------------
--------------------------------------------------------------------------------
-----S---------------------------------------------------------S----------S-----
------------------------------------------------S-------------------------------
-----------------------S-----------------S-----------------------------S--------
---------------------------------------S-----------------------S----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------S---S------------S---------------------------S----------
------------------S-------------------------------------------------------------
--S--------S--------------------------------------------------------------------
---------------S----------------------------------------------------------------
----------------------------------------------------S----------------------S----
---------------------S--------------------------------------S-------------------
-----------------S---------------------------------------S----------------------
--------------------------------------------------------------------------------
--S-------------------S------------------------------------------------------S--
----------------------------------------------------------S-----------S---S-----
--------------------------------------------------S-----------------------------
--------------------------------------------------------S----------S------------
-------------------------------------------------S-----S-----------------S------
---------------------------------------------SSS--------S-----------------------
---S-----------S------------S---------S-------S--------S------------------S-----
---------------------S------------S--------S-------------------------------SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------
------S---S---------S-------------------------------------S---S-----------------
------------------SS------------------------------------------------------------
------S----------------S--------------SS------------------------------S---------
S--S-S--S----------S------------------S-----------------------------------------
---------------------S-S------------------------------------------S-------------
-----------S------
>forward_886
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------------------------------------------------------------------ATGCCCTCAATGCT
CCAACA--------------------------------------------------------------------------
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>reverse_2262
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---------------------AAAAATGGTGGCACCCTTGC---------------------------------------
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>forward_1869
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---------TGAGGCTGCTTCCTTGAAGG---------------------------------------------------
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>reverse_2874
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-------------------------------------------------------------------------CCGTGGC
AACTGAAAGTCTG-------------------------------------------------------------------
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------------------
