>input_sequence_49199
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--------------------------ATGGCTGAGAAGAAGCCGAGGATTGTCATAGTGGGTGCGGGCATAGCCGGACTC
TCGGCGGCGCAGCAGCTATGCGGCGCGGGCCGGGACAAGTTCGAGGTGGTGGTGGTGGAGGCTGGCTGCCGCGCTGGCGG
CCGAGTATACACGTCCGAGTTCGCCGGCCATCGTCTCGAGATGGGCGCTACGTGGGTGCAGGGCATCGTCGGGAGTCCCG
TGTACGCGATGGCGCGGGAAGCAGGCGCGCTCCGGGAGGAGGCCGCAGACCTCCCGTACGAGCGCATGGACGGGTTCCCT
GACAGCGTCCTGACTGTCGCCGAGGGAGGCGACGTCGTCGACGCGGACACGGTGGCCAAGCCGATCGAGGACCTGTACAG
GGGCATGATGAAGGCCGCCCGTGCCGGTGAGGCTGTCGGCGGAGGGGGAGTGGAGGAATACCTGCGCCGGGGGCTGCGAG
CGTACCAGGCGGCGCGCCCGGTCGGTAGCAAGGAGCTGGAGGAGATCGAGGAGGCTCTGCTTTCCATGCACATCAACCGG
GAGCGCACGGACACCTCCGCCGATGATCTCGGCGACCTGGACCTCGCGGCCGAGGGCGAGTACCGCGACTTCCCCGGCGA
CCACGTCACGATCCCCAGCGGATACACCCGCGTGGTCGAGCACCTCGTCGCCGCGCTCCCCGCCCGGTACTGTCCGCCTC
GGCCTCGGCCTCCGTCGTCTCGAGTGGGGCGAAATCCCAGTGCGCCTCCACTTCGGCGATGAGGCGACGACGACGCTCAC
CGCTGACCATGTCATCCTCACAGTCTCGCTGGGCGTCCTCAAGGCGAGCATCGACGAGGACGTGTCCGCTACGGGCGCAA
TCGCCTTCGACCCGCCGCTCCCAGAGTTCAAGCGTGAGGCCGTCGCGCGGCTGGGATTCGGTGTCGTGGACAAGCTGTTC
GTCGAGGTGGAGGCCGTGGAGACGCCGGAGCTGGACGGCGGCGACGAGCAGCTAGCCAGTGCGGCCCCGCCGGCTTTCCC
GTTCCTGCACATGGCGTTCCTCGGAGACGCGGCGAAGATCCCGTGGTGGATGCGCGGCACCGAGTCAGTCCGCCCCGTCC
ACGCGGGCTCCACCGTGGCGCTCGCATGGTTCGCCGGGCGGGAGGCCACGCACCTCGAGTCGCTCCCCGACGACGAGGTC
ATCCACGCGCTCCACTCCACGCTGGAATCATTCCTCCCGGCCCCACCTCGCCGCTGCAGCGGGGCAGCCGCGGGGGCGAC
CCCACGGTGGAGGGTGAAGAGAATCAAGAGGAGCGGGTGGGCGACGGACCCGCTGTTCCTCGGGTCCTACAGCTACGTCG
CCGTCGGGTCAAGCGGCGAGGATCTCGATCGGATGGCAGAGCCGCTCCCAAGCGGGCCGGAGGCCGGTGGGACGCCGCTG
AGCGTGCTGTTCGCCGGCGAGGCGACGCACCGGACGCACTGCTCGACGACGCACGCGGCCTACCTGAGCGGCGTACGGGA
GGCCGACCGGCTGCTGCAGCACTACCGCTGA-------------------------------------------------
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>chr3D_1_TraesCS3D01G251100
TTCAATTCATCGACAGTGTACAACATGAATTACATAACCCTGCTCATGAAAATCAAGAAAGGATTGCAGAACAGGGCAAG
AAGCTTCAGTATGAGCAGAATGAGTACAACTAGAAATATGTTCTACTCTCGAGTTGAGAACCTCATGAGCATAATTGTGA
GCAATTTCATTGTTGTTTCTGAAGATGTGGAAGACAACAGTAAGAATGTGAGAAGTGGCTTGTAGGAAAGTGTTAATCGG
TTGTGTGCATCTCCAGGTGATGTT-----CATTGATGTCTCTTGAGGCGGTCATCTTTGCCAAGGAGGGGTTATCCATGA
AGAATGGAACCTGCTTGAATTGAAGCCTGCAAGCAATCTTAGCAGCAAACTGGAGACCAGAAGCTTCAACAATGAGCGAT
GATCGGATCGGGTTAGTAGATGCTTGAATCATGATTTCTCGATTTGACTGGG-TTCAGGAATTTGGATGTGTACTCCAAT
GC-----------CAGTTTCTGGACAATTTCTCCTATCTGGGATATTTCCCTTTTGCCAAGAAGCATCAGAGAATATCTT
GGTACCTGCAATTGCTAAATTT------------GAGCCTTGTTGAATATATTTCGGCCCT---GAGAGAGAATAGCAGA
AGAATCCTTCGGGGAAGGATCAGCTGGACTACTTGGTTGGTCTTGCTCCTGATGATGCATGCCTTGAGCCGAAAGTATAG
CATACGCTGCCTGAAGAACTTGATGGGGGCGAGAGTCTTTCCTGTTTTTTCAAAGACACCACAGAAAAGTGAGTCTTTCC
TGTCTTTTCAAAGACACCACAGAAAAGTGAAAATGTTAGGTATAGAGGCATGCGAGGTGCCCGTTTTTGTGAAGGGAAGT
CACCCTGACTTCGCTTCTTAGTGCGCGCGAACCTATGCTATTTATTCTGCTTCTCTCCTTTGTTGTAGCGGCGCGTGCTC
CTGGCTTTGCACTCTCCGGGGGGCGG----------------------------GACAACTGACCAGTGCGAAACCGTCG
GCGAGGTGCGCGC------GGCGAGGATGGCTGAGAAGAAGCCGAGGATTGTCATAGTGGGTGCGGGCATAGCCGGACTC
TCGGCGGCGCAGCAGCTATGCGGCGCGGGCCGGGACAAGTTCGAGGTGGTGGTGGTGGAGGCTGGCTGCCGCGCTGGCGG
CCGAGTATACACGTCCGAGTTCGCCGGCCATCGTCTCGAGATGGGCGCTACGTGGGTGCAGGGCATCGTCGGGAGTCCCG
TGTACGCGATGGCGCGGGAAGCAGGCGCGCTCCGGGAGGAGGCCGCAGACCTCCCGTACGAGCGCATGGACGGGTTCCCT
GACAGCGTCCTGACTGTCGCCGAGGGAGGCGACGTCGTCGACGCGGACACGGTGGCCAAGCCGATCGAGGACCTGTACAG
GGGCATGATGAAGGCCGCCCGTGCCGGTGAGGCTGTCGGCGGAGGGGGAGTGGAGGAATACCTGCGCCGGGGGCTGCGAG
CGTACCAGGCGGCGCGCCCGGTCGGTAGCAAGGAGCTGGAGGAGATCGAGGAGGCTCTGCTTTCCATGCACATCAACCGG
GAGCGCACGGACACCTCCGCCGATGATCTCGGCGACCTGGACCTCGCGGCCGAGGGCGAGTACCGCGACTTCCCCGGCGA
CCACGTCACGATCCCCAGCGGATACACCCGCGTGGTCGAGCACCTCGTCGCCGCGCTCCCCGCCCGGTACTGTCCGCCTC
GGCCTCGGCCTCCGTCGTCTCGAGTGGGGCGAAATCCCAGTGCGCCTCCACTTCGGCGATGAGGCGACGACGACGCTCAC
CGCTGACCATGTCATCCTCACAGTCTCGCTGGGCGTCCTCAAGGCGAGCATCGACGAGGACGTGTCCGCTACGGGCGCAA
TCGCCTTCGACCCGCCGCTCCCAGAGTTCAAGCGTGAGGCCGTCGCGCGGCTGGGATTCGGTGTCGTGGACAAGCTGTTC
GTCGAGGTGGAGGCCGTGGAGACGCCGGAGCTGGACGGCGGCGACGAGCAGCTAGCCAGTGCGGCCCCGCCGGCTTTCCC
GTTCCTGCACATGGCGTTCCTCGGAGACGCGGCGAAGATCCCGTGGTGGATGCGCGGCACCGAGTCAGTCCGCCCCGTCC
ACGCGGGCTCCACCGTGGCGCTCGCATGGTTCGCCGGGCGGGAGGCCACGCACCTCGAGTCGCTCCCCGACGACGAGGTC
ATCCACGCGCTCCACTCCACGCTGGAATCATTCCTCCCGGCCCCACCTCGCCGCTGCAGCGGGGCAGCCGCGGGGGCGAC
CCCACGGTGGAGGGTGAAGAGAATCAAGAGGAGCGGGTGGGCGACGGACCCGCTGTTCCTCGGGTCCTACAGCTACGTCG
CCGTCGGGTCAAGCGGCGAGGATCTCGATCGGATGGCAGAGCCGCTCCCAAGCGGGCCGGAGGCCGGTGGGACGCCGCTG
AGCGTGCTGTTCGCCGGCGAGGCGACGCACCGGACGCACTGCTCGACGACGCACGCGGCCTACCTGAGCGGCGTACGGGA
GGCCGACCGGCTGCTGCAGCACTACCGCTGAGATTTGTTTTGGATTTTTCCCTAGACGGCGACCCGCGA---------TC
GACTCGATCGAGCCCTGTACCCGTGGAAGGTAGCTAGGCAGGCTTTAATTGGGCATTAGAGAGGGGCCCACCTGAAAATC
AGGGGTGAATGTTTAGAGCATGGTTAATAATATAGCCAGCTGCTGGCTATAAGTCAGTGTCATGTCATCTACGGCCCATC
TTATAGCCAACATGTCATCTACAGTCCATCTTATAGTCAACATCCAGTAGTAGATTAAAAGAGTTTACTATTTTTTATTA
TGTGGCCCACATTTTGTTCTCATAAAGTGCCTAGAAACACGTGTTAGAGCTGGCTCTTCACGAAGAGCCCGCTTACCTTC
TCTCTTCTCTTTTCTTTCCTTCAACTAAGCAGAAATATACTAGTTTAATCTTTATAGCCCGCTGACTCAGCTCTATTGTA
CTTGCTCTTAGTTGGAGCCTTGGAGGGAAAGAAAGTTTACGTAGCAACAATACGTAGGTCTAGCAGTTTCGCTAAGTTAT
TGTTGGTATGTCGCTCTGTTGACA------TATAACGATATGAAAATACGGAGGATTTGATATATTTGCAGTAGGTAAGT
TACCTACTGTTTTTCTGTCTTTTCTTTTGGAGATGGAGGTTGTGGTGGTGCCTTGAGGCTTGAGCTCTTCAGTTCTTCCG
TGAGCAGGTGGCAACATTCTCTGTACTTTCTTGCTTGCTTGCTTTCTCTTTGCTACTTGTCCTCTTTTTTATTGTTCATT
TTATTATAATTATTGATTGTTCATCTCTGCTACTTGTCCTTGTTGTTGGGTTTAGCAGCGTAGCAGCTAGCGGCTGCGTT
TGGTGTCGGCTTACTAGAGCATCTATAGCCGGCCATCTCAAACCCATCTCAAACGTCCAGGCGAACGGTCCGGTCACTGA
GTGGTTATAAAAATTTGATCCGGAAAGGTTCTTTAAACGGGTCTTAAACGTCTGGACTGACCGGCGCCTTTTATATCCAG
CTCAAA
>chr3D_1
TTCAACTCATAGATAGTGTACATCATGAATTACATAATCCTGCTCATGTAAGTCAAGGAAGGATTGCAGGACAGGGCAAG
AAGTTTCAGTATGAGCAGAATAAGCACAACTAAAAACAGGTTCTACTCTCGAGTTGACAACCTGATGAGCACAGTTGTGA
GCAATTTCATTGTTGTTCCTGGAGATGTGGAAGACAGTAGTAAGAATATGAGAAGTGGCTTGTATGAAAGTGCTAATTGG
TTGTCTGCATCTCTAGGTGATGTTGGAACCACTGATGTCTCTTGAGGCAGTCATCTTT-CCGAGGAGAGGTTGTCCGTCA
AAAAGGAATCCTGTTTGAATTGAAGCCTGCAAGCAATCTTAGCAGCAAACTGGAGAGCAACACCTTCAACAATGAGCGGC
GATTGGACCGAGTCAGTAGATGCCTGAATCATGATTTTTCGATTTGACTAGCCTTCAGGAATTTGGATGTGTACTCCGAT
GC-----------CAATTTC-----------GCCTTCCTGGGATATTTTCCTTCTGCCAAGAAGCATCAAAGAATATCTT
GGTACCTGCAATCGCTAAATCAGATTTTAGAGTGGAGCCTTGCTGAATATGTTGTTGACCTTGAGAGAGAACATAACCGA
AGAATCCTTCGGGGAAGGATCAGCTCAACTATTTAGTTGGCCTTGCTCATGATGATTCATGACTTGAGCCGAAACTATAG
CATGCGCTGCCTGA------------------------------------------------------------------
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>chr5A_1
TTCAACTCATAGACAGTGTACAACATGAATTACATAACCCTGCTCATAAAAGTCAAGGAAGGATTGCAGAACAGGGCAAG
AAGTTTCAGTATGAGCAGAATGAGTATAACTAAAAACATGTTCTACTCTT-------GAACCCGATGAGCACAGTTGTGA
GCAATTTCATTGTTGTTCTTGGAGATGTGGAAGACAATAGTAAGAATATGAGAAGTGACCTGTATGAAAGTGCTAATTGG
TTGTCTGCATCTCCAGGTGATCTTGGAACCATTGATATCTCTTGAGGTAGTCATCTTTGCCAAGGAGAGGTTGTCCGTCA
AGGA---AACATGTTTGATTTGAAGCTTGCAAGCAATCTTAGCGGCAAATTGGAGAGCAACAGCTTCAACAATGAGCGGC
GATTGGACCTAATCAGTAGATGCCTGAATTATGATTTTCCAATTTGACTGGCCTTCGGGAATTTGGATGTGTACTCCCAT
GCTAGTTGCTGGACAATTTC-----------TCCTTCCTGGGATATTTTCCTTCTGCCAAAAAGCATCAGAGAATATCTT
GGTACCTGCAATTGCTAAATCAGATTTTAGAGTGGAGCCTTGCTGAATTTGTTCA--CCTT---GAGAAAGAACAGCCGA
AGAATCCTTCGGGGAAGGATTAGCTTGACTATGTAGCTGGTCTTGCTCATGATGTTGCATGACTTGAGCCGAAACAATAG
CGTGCGCTACCTGATGTACTTGATGGGGGCGAGAGTCTCTCCTG------------------------------------
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>chr3B_861
GCTTTTAGTA----------------------------------------------------------------------
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-----------------------CGCGCGAACCTATGCTCTTTATTCTGCTCATCTTCTTTGTTGTAGCGGCGCGTGCTC
CTGGCTTTGCACTCTCCGGGGGG-ACCGGGGAAGGTAAAACACTAGTGAGAACTGACAACTGACCAGTGCTAAACCGTCC
GCGAGGTGCGCGCGCGGCAGGCGAGGATGGTTGAGAAGAAGCCGAGGGTTGTCATAGTGGGCGCGGGCATAGCCGGACTC
TCGGCGGCGCAGCAGCTATGCGGCGCGGGCCGGGACAAGTTAGAGGTGGTGGTGGTGGAGGCTGGCTGCCGCGCTGGTGG
CCGGGTATACACGTCCGAGTTCGCCGGCCATCGTCTCGAGATGGGCGCTACGTGGGTGCAGGGCATCGTCGGGAGCCCCG
TGTACGCGCTGGCGCGGGAAGCAGGCGCGCTCCGGCAGGAGGCCGCGGACCTCCCTTACGAGCGCATGGACGGGTTCCCT
GACAGCGTCCTGACTGTCGCCGAGGGCGGCGATGTCGTCGACGCGGTGACGGTGGCCAAGCCGATCGAGGAGCTGTACAG
GGACATGATGGAGGCCGCGCGTGCCGGTGAGGCTGTCGGCGGAGGGGGTGTGGAGGATTACCTGCGCCGGGGGCTCCGAG
CGTACCAGGCGGCGCGCCCGGGCGGGAGCAAGGAGCTGGAGGAGGTCGAGCAGGCGCTGCTTGTCATGCACATCAACCGG
GAGCGCACGGACACCTCCGCCGACGATCTCGGCGACCTTGACCTCGCGGCCGAGGGCGAGTACCGCGACTTCCCCGGCGA
CCACGTCACGATCCCCGGTGGGTACACCCGCGTGGTGGAGCACCTCGCCGCCGCGCTCCC-GCCCGGCACTGTCCGCCTC
GGCCTCCGCCTCCGTCGTCTCGACTGGGGCGAAACCCCCGTGCGCCTCCACTTTGCCGATGAGGCGACGACGACGCTCAC
CGCTGACCACGTCATCCTCACGGTCTCGCTGGGCGTCCTCAAGGCGAGCATCGGCGAGGACGTGTCCGCTGCGGGTGCAA
TCGCCTTCGACCCGCCGCTCCCACAGTTCAAGCGTGAGGCCGTCGCGCGGCTGGGATTCGGTGTCGTGGACAAGCTGTTT
ATCGAGCTGGAGGACGTGGAGATGCCGGAACCGGATGGCGACGACGAGCAGCAAGCCAGGACGGCCCCGCCGACTTTCCC
GTTCCTGCACATGGCCTTCGTCGGAGACGTGGCGAAGATCCCGTGGTGGATGCGCGGCACCGAGTCAGTGTGCCCCGTCC
ACGCGGGCTCCACCGTGGCGCTCGCGTGGTTCGCCGGGCGGGAGGCCGCGCACCTCGAGTCGCTCCCCGACGACGAGGTC
ATCCGCGCGGTCCACTCCACGCTGGAATCCTTTCTCCCGGGCCCACCTCGCCGCTGCAGCGGGGCAGGCGCGGGGGCGAC
CCCACGGCGGAGGGTGAGGAGAATCAAGAGGAGCGGGTGGGCGACGGACCCGCTGTTCCTCGGGTCCTACAGCTACGTCG
CCGTCGGGTCAAGCGGCGAGGATCTTGATCGGATGGCAGAGCCGCTCCCGCGCGGACCGGAGGCCGGTCGGACGCCGCTG
AGCGTGCTGTTCGCCGGCGAGGCGACGCAACGGACGCACTACTCGACGACGCACGCGGCCTACCTGAGCGGCGTACGGGA
GGCCGACCGGCTGCTGCAGCACTACCGCTGAGATTTGTTTTGGACCTTT-CCTAGACGGCGACCCGCGATCCGATCGTTC
GACTCGATCGAGCCCTGTATCCGTGGAAGGTAGCTAGGC-----------------------------------------
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------------------------------------------------------------------------TAAGTTAT
TGTTGGTATGTCGCTCTATTGACA------TATAATGATATGAAAATACGGAGGATTTGATATATTTGCAGTAGGTAAGT
CACCTACTGTTTTTCTGTCTTTTCTTTGA-AGATGGAGGTTGTGGTGGTGCCTTGAGGCTTGAGCTCTTCAGTTCTTCCG
TGAGCAAGTGACAACATTCTCTGTACTTCCTTTCTTGCTTGCTTTCTCTTTGCTACTTGTCCTTTTTTTTATTGTTCATT
TTATCACAATTATTGATTGTTCATCTTTGCTACTTGTCCTTGTTGTTGGGTTTAGCAGCGTAGCAGCTAGTGGCTGCGTT
TCGTGTCGGCTTATTAAAGCATCTACAGCCGGCCATCTCAAACCCATGTCAAACG-------------------------
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>chr3A_890
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-----------------------------------------TTATTCTGCTCCTCTCCTTTGTTG-AGCGGCGTGTGCTC
CTGGCTTTGCACCCTCCGGCGGGGACTGGGGAAGGTAAAGCACTAGT-------GACAACTGACCAGTGCGAAACCGTCG
GCGAGATGCGCGCGCGGCTGGCGAGGATGATTGAGAAGAAGCCGAGGATTGCCATAGTGGGCGCGGGCATAGCCGGACTC
TCGGCGGCGCAGCAGCTATGCGGCGCGGGCCGGGACAAGTTCGAGGTGGTGGTGGTGGAGGCTGGTTGCCGCACTGGCGG
CCGGGTATTCACGTCCGAGTTCGCCGGCCATCGTCTCGAGATGGGCGCTACGTGGGTGCAGGGCATCGTCGGGAGCCCCG
TGTACGCGCTGGCCCGTGAAGCAGGCGCGCTCCGGCAGGAGGCCGCGGACCTCCCTTACGAGCGCATGGACGGGTTCCCT
GACAGCGTCCTGACTGTCGCCGAGGGCGGCGACCTCGTCGACGCGGACACGGTGGCCAAGCCGATCGAGGAGCTGTACAG
GGGCATGATGGAGGCCGCGCGTGCCGGTGAGGCTGTCGGCGGAGGGGGTGTGGAGGAGTACCTGCGCCGGGGGCTGCGAG
CGTACCAGGCGGCACGCCCGGGCGGGAGCAAGGAGCAGGAGGAGATCGAGGAGGCGCTGATCGGCATGCACATCAACCGG
GAGCGCACGGACACCTCCGCCAACGACCTCGGCGACCTTGACCTCGTGGCCGAGGGCGAGTACAGCGACTTCCCCGGCGA
CCACGTCACGATCCCCGGTGGGTACACCCGCGTCGTGGAGCACCTCGTCGCCGCGCTCCC-GCCCGGCACCGTCCGCCTC
GGCCTCCGCCTCCGTCGTCTCGACTGGGGCGAAACCGCCGTGCGCCTCCACTTCGCCGATGAGGCGACGACGACGCTCAC
CGCCGATCACGTCATCCTCACGGTCTCGCTCGGCGTCCTAAAAGCGAGCATCGGCAAAGACGTGTCCGCTACGGCT----
--------GACCCGCCGCTCCCACAGTTCAAGCGTGACGCCGTCGCGCGGCTGGGATTCGGTATCGTGGACAAGCTGTTC
ATCGACCTGGAGGCCGTGGAGACGCCGGAGCCGGACGGCGGCGACGAGCAGCTAGCCAGGGCGGCCTCGCCGGCTTTCCC
GTTCCTGCACATGGCCTTCGTCGGAGACGTGGCGAAGATCCCGTGGTGGATGCGCGGCACCGAGTCAGTCTGCCCCGTCC
ACGCGGCCTCCACCGTGGCGCTCGCATGGTTCGCCGGGCGGGAGGCCGCGCACCTCGAGTCGCTCCCCGACGACGAGGTC
ATCCGCGCGGTCCACTCCACGTTGGAATCGTTCCTCCCGGCCCCACCTCGCCGCTGCGGCGGGGCCGGCGCGGGGCCGAC
CCCACGGTGGAGGGTGAAGAGAATCAAGAGGAGCGGGTGGGCGACGGACCCGCTGTTCCTCGGGTCCTACAGCTACGTCG
CCGTCGGGTCAAGCGGCGAGGATCTCGATTGGATGGCAGAGCCGCTCCCACGCGGACAGGAGGCCGGTCGGACGCCGCTA
CGCGTGCTGTTCGCGGGCGAGGCGACGCACCGGACGCACTACTCGACGACGCACGCGGCCTACCTGAGCGGCGTACGGGA
GGCCGACCAGCTGCTGCAGCACTACCGCTGAGATTTGTTTTGGATTTTTCCCTAGACGGCGACCCGCGATCCGATCGTTC
GACTCGATCGAGCCCTGTACCCGTGGAAGGTTGCTAGGC-----------------------------------------
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------------------------------------------------------------------------TAAGTTAT
TGTTCGTATGTCGCTCTATTAATATAGTACTATAATGATATGAAAATACGGAGGATTTGATATATTTGCATCAGGTAATT
CACCTACTGTTTTTCTGTCTTTTTGGAGAT-----GAGGTTGTGGTGGTGCCTTGAG-------CTCTTCAGTTCTTCCG
TGAGCAAGTGACAACATTCTCTGTACTTCCTTTCTTGCTTGCTCTCTCTTTGCTACTTGTCCTCTTTTTTATTGTTCATT
TTATCACGATTATTGATTGTTCATCTTTGCTA------------------------------------------------
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>SNPs
----------S----------------------------------------S-----S----------------------
---S----------------------------S---S--------------------------S-------S-S------
-----------------S---S---------------S---------S----------------S-------S----S--
----S-------------------------------------------S------------------S----S---S-S-
----S-S------S------------------------------------------S--SS-----------------SS
---S---S--S--S---------S-------------S-------------S-------------------------S--
---------------S----SSSSSSSSSSS----SS-----------S----S--------------------------
--------------------SS--------------------S-------S--SSS---------------------S--
-------------------------S-----S--S-------------S------------S------------S-----
---S----------S-S---------------------S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS----------------S-----------S----------------------------
-----------------------SSS------------------------------------------------------
------------------------------S------------------------------S------------------
--------------------------------------------------------------------------------
---S-----------------------------------------------------------------------S----
--------S--------------------------S----------S--------S------------------------
--------------------------S--------------------------------------------S--------
----------S-------S-----------------------------S--------S----------------------
---------------------S---S-----------------------------S------SS----------------
-----------------------S--------------S-----------------------------------------
----------------S-S--S--------------S-----------------------S------S------------
------S----------------S----------S---S----------------S------------------------
---------S-----------S-------------------------------S---------------------S----
-----------------------S--------------------------------------------------------
S-----S------------------------S---------------------------S--------------------
---------------S---S---------S----------------------------------------S---------
-----------------------------------------------S--------------------------------
----S----S-------------------S-------------------------------------S------------
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--------------------------------------------------S----S------------S-----------
----------------------------------------S---------------------------------------
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---------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------
-----------------S-----------------S--------------------------------------------
S--------------------------SSS--------------------------------------------------
------S---S-----------------S---S-----------------------------------------------
----S-S-------------------S-------------------------------------------S---------
-S-----------S--S--------S---------------------S-------SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS
>forward_411
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-----------------------------------------------------------------------ATGAGCGAT
GATCGGATCGG---------------------------------------------------------------------
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>reverse_1850
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---------TGTCATCCTCACAGTCTCGC---------------------------------------------------
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>forward_666
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------CTTCGGGGAAGGATCAGCTG------------------------------------------------------
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>reverse_2688
--------------------------------------------------------------------------------
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-----------------------------------------------ATTGGGCATTAGAGAGGGGC-------------
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