CLUSTAL X (1.81) multiple sequence alignment input_sequence_49186 -------------------------------------------------- chr5D_1_TraesCS5D01G011700 GGCTGTTGCGGAGATATGTTCAAATTCGCCGAAGAGGAAAAGTTGTTTCC chr5A_1 GGCTGTTGCGGAGATATGTTCAAATTCGCCGAAGAGGAAAAGTTGTTTCC chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs -------------------------------------------------- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 -------------------------------------------------- chr5D_1_TraesCS5D01G011700 TTGGAACAGAAAATAGAGACCCTTAAATCATATCATCTGGTAGGTAGATA chr5A_1 TTGGAACAGAAAATAG-GACCCTTAAATCATATCATGTGGTAGGTAGATA chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs ----------------S-------------------S------------- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 -------------------------------------------------- chr5D_1_TraesCS5D01G011700 GACACAAATCTTAATAATCTGATGAGCTCACCATCTCACCCCTTTTGGCA chr5A_1 GACACAAATCTTAATAATCTGATGAGCTCACCATCTCACCCCTTTTGGTA chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs ------------------------------------------------S- forward_149 -----------------------------ACCATCTCACCCCTTTTGGC- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 -------------------------------------------------- chr5D_1_TraesCS5D01G011700 ATCTCTTCGCGTTAGAGACCAGACTCGCCCCTCAGATCTAGTTTTACTAA chr5A_1 ATCTCTTCGCGTTAAAGACCAGACTTGCCCCTCAGATCTAGTTTTACTAA chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs --------------S----------S------------------------ forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 -------------------------------------------------- chr5D_1_TraesCS5D01G011700 TTAAGGTCCTTGAAGAAGAGATACTGTGATGCACTCCGGTGAACCAGTGC chr5A_1 GGTAG----TTGAAGAAGAGATACTGCGATGCAGTCCGGTGAACCAGTGC chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs SSS--SSSS-----------------S------S---------------- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 -------------------------------------------------- chr5D_1_TraesCS5D01G011700 TAGGATC-ATACTCAGATTCTGAATTCAAGGGTCAACTGCCTTGGAGAAC chr5A_1 TAGGATCAATACTCAGATTCTGAATTCAAGGGTCAACTGCCTTGGAGAAC chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs -------------------------------------------------- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 -------------------------------------------------- chr5D_1_TraesCS5D01G011700 TTAGCTCCTTGAGTAGTCCTCACCCTGTTCGGTGTTGGGAACTTACAACC chr5A_1 TTAGCTCCTTGAGTAGTCCTCACCCTGTTCGGTGTTGGGAACTTTCAACT chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs --------------------------------------------S----S forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 -------------------------------------------------- chr5D_1_TraesCS5D01G011700 -TTTTTTTTCTGACTTAACTTAACTGCCCTATCCGTCGGGAACTGATAAT chr5A_1 TTTTTTCTTCTAACTTAACTTAACTGCCCTATCCGTTGGGAACTGATAAT chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs ------S----S------------------------S------------- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 -------------------------------------------------- chr5D_1_TraesCS5D01G011700 TTCTGCTCACCGGTCATTATTATTGTACTGATAACTGGAAAGGATACTGT chr5A_1 TTCTGCTCACCGGTCATTATTATTTTACTGATAACTGGAAAGGATACTGT chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs ------------------------S------------------------- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 -------------------------------------------------- chr5D_1_TraesCS5D01G011700 CCTGAAATTGAAACCTCAGACTAAAGCTCATCGATCTGGGGATCATGATG chr5A_1 CCTGAAATTGAAACCTCTGACTAAAGCTCATCGATCTCGGTATCATGATG chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs -----------------S-------------------S--S--------- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 -------------------------------------------------- chr5D_1_TraesCS5D01G011700 TTTTTTCACTTTTTGTATTTTTATGTGCCAACTAGTGAAGTGGCCTGATT chr5A_1 TTTTTTCACTTTTTGTATTTTTGTGTGCCAACTAGTGAAGTGGCCTGATT chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs ----------------------S--------------------------- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 -------------------------------------------------- chr5D_1_TraesCS5D01G011700 CCGTTGTTAAGAGTTGTTAGAACTTTATATTTGGTTGCAGTGCCAGCTGA chr5A_1 CCGTTGTTAAGAGTTGTTAGAACTTTATGTTTGGTTGCAGTGCCAGCTGA chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs ----------------------------S--------------------- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 -------------------------------------------------- chr5D_1_TraesCS5D01G011700 TTACCATTGTCTGCGTGTGGCGCCATTTTTTGCTTTTGCTGCTAATCAAA chr5A_1 TTACCATTGTCTGCGTGTGGCGCCATTTTTTGCTTTTGCTGCTAATCAAA chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs -------------------------------------------------- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 -------------------------------------------------- chr5D_1_TraesCS5D01G011700 ATCAAGGATGCCACTCCTGGGTATTTTCTAACTGCTGCGAGATAAACTGA chr5A_1 ATCAAGGATGCCACTCCTGGGTATTTTCTAACTGCTGCGAGACAATCGTT chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs ------------------------------------------S--S-SSS forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 -------------------------------------------------- chr5D_1_TraesCS5D01G011700 AACACTCAAGAGGAAACCAGCAAATATTGTAATGAAACTTATTAGAGGAA chr5A_1 TGA----------------------------------------------- chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 -------------------------------------------------- chr5D_1_TraesCS5D01G011700 CCCGACAAAAACTGTAGTAACTGAATCATTTGGAATAGGAATACTGTAAT chr5A_1 ---------------------------------------AATACTGTAAT chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 -------------------------------------------------- chr5D_1_TraesCS5D01G011700 AACTTATTAGAGAAACCCGACAAGTTTGCTGATATGTGGATAATGATCTC chr5A_1 AACTTATTAGAGGAACCCTACAAGTTTGCTGATATGTGGATAATGATCTC chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs ------------S-----S------------------------------- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 -------------------------------------------------- chr5D_1_TraesCS5D01G011700 ATTTTTTTGTTTGGATAAATCATACCATGAATGGAGCCCTGTCATCTTGC chr5A_1 ATT----------------------------------------------- chr5D_854 -----TTTCTTTGGATAAATCGTCCCATGAATGGAAAGGGGTCATCTCTC chr5A_858 ---------TTTGGATAAATCGTCCCATGAATGGAACCGGGTCATCTCTC chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs ---SS---S------------S-S-----------S--SS-------SS- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 --------------------------------GGAGCCCTGTCATCTTGC reverse_3371 -------------------------------------------------- input_sequence_49186 -------------------------------------------------- chr5D_1_TraesCS5D01G011700 TCTTTGTTTCTAACTTCTAACATGTCTTTGTGGCATGTATATCTGTGATT chr5A_1 TTTTTGTTTCTAACTTCTAAGATGTCTCTGCGGCGTGTATATCTGTGATT chr5D_854 --TGTATTTGTAACTTCTAAGATGTCTCTGCGGAGTGTTTATCTGTTATT chr5A_858 TTTGTGTTTGTAACTTCTAACATGTCTCTGCGGAGTGTACATCTGTGATT chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs -S-------------------------S--S---S--------------- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 TC------------------------------------------------ reverse_3371 -------------------------------------------------- input_sequence_49186 -------------------------------------------------- chr5D_1_TraesCS5D01G011700 TTGA-TACTGATTCATTCCCCTG--CTGGATACATGCAGCCGGCTGTTTG chr5A_1 TTGATTACTGATTCATTGCCCTG--CTGGATACATGCAGCCAGCTGTTTG chr5D_854 TTGACTATTGATTTATTGCCCTG--CTGGATACATGCAGCCGGCTGTTTG chr5A_858 TTGACTATTGATTTATTGCCCTGTGCTGGATACATGCAGCTGGCTGTTTG chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs -----------------S-------------------------------- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 -----ATGTCGA---------------CCTGCAGTTCCAAGAGGGCGCGA chr5D_1_TraesCS5D01G011700 ATGAAATGTCGA---------------CCTGCAGTTCCAAGAGGGCGCGA chr5A_1 ATAAAATGTCGA---------------CCCGCAGTTCCAAGAGGGCGCGA chr5D_854 ATGAAATGTCAGAGCTAGCTTCAATCCCCTGCAGTTCCAAGAGGGCGCGA chr5A_858 ATGAGATGTCGGAACTAGCTTCAATCCCCTGCACTTCCAAGAGGGCGCGA chr5D_1008 ---------------------------CCTGCAGTTTGAAGAGCGCACGA chr5B_1008 ---------------------------CCTGCAGTTCCAAGAGCACACGA chr4A_1008 ---------------------------CCTGTCGTTCCAAGAGCGCGCAA chr4A_1008 ---------------------------CCTGTCGTTCCAAGAGCGCGCAA chr2D_1008 ---------------------------CCTGTGGTTCCAAGAGCGCGCGA chr5D_1014 ---------------------------------GTTCCAAGAGCGCGCGA chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs -------------------------------------------------- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 GGCGCCAGCGATGGTGTCGACAGGCTCAGCAGCCTTCCCAACGAGCTGCT chr5D_1_TraesCS5D01G011700 GGCGCCAGCGATGGTGTCGACAGGCTCAGCAGCCTTCCCAACGAGCTGCT chr5A_1 GGCGCCAGCGATGGCGTCGACAGGCTCAGCAGCCTTCCCAACGATCTGCT chr5D_854 GGCACTAGTGATGGTGTCGACAGGCTCAGCAGCCTTCCAGACGAGCTGCT chr5A_858 GGCACCAGTGACGGTGTCGACAGGCTCAGCAGCCTTCCAGACGAGCTGCT chr5D_1008 GGCACCAGCAATGGTGTTGATAGGCTCAGCAGCCTTCCCGACGAGCTGCT chr5B_1008 CGCACCACCAATGGTGTTGATAGGGTCAGCAGCCTTCCCGACGAGCTGCT chr4A_1008 GGCACCTACAATGGCGTCGACAGGCTCAGCGGCCTTCCCAGTGAGCTGCT chr4A_1008 GGCACCTAAAATGGCATCGACAGGCTCAGCGGCCTTCCAAGTGAGTTGCT chr2D_1008 GGCAGCATGAATGGTGTCGACAGGCTCAGCAGCCTGTCCGATGATCTGCT chr5D_1014 GGCACCTGCAGTGGCGTCGACAGGCTCAGCAGCCTTCCCAGTGAGCTGCT chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs -------------------------------------------------- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 CCACCGCGTGATGTCCTTCCTGCCGATGCCGGAGGTCGTGCGCACAAGTC chr5D_1_TraesCS5D01G011700 CCACCGCGTGATGTCCTTCCTGCCGATGCCGGAGGTCGTGCGCACAAGTC chr5A_1 CCACCGCGTGATGTCCTTCCTGCCGATGCCGGAGGTCGTGCGCACAAGTC chr5D_854 ACATTGCGTGATGTCCTTCCTGCCGATGCCGGAGGCCGGGCGCACAAGTC chr5A_858 ACACTGCGTGATGTCCTTCCTGCCGATGCCGGAGGCCGTGCGCACAAGTC chr5D_1008 CCACCACGTGATGTCCTTCCTGCCCATGCCGGAGGTTGTGCGCACAAGTC chr5B_1008 CCACCACATGATGTCCTTCCTGCCCATGCCGGAGGTCGTGCGCACAAGTC chr4A_1008 CCACCGCGTGATGTCCTTCCTGCCCATGCCGGAGGCCGTGCGCACAAGCC chr4A_1008 CCACCGCGTGATGTCCTTCCTGCCCATGTCGGAGGCTGTGCGCACAAGCC chr2D_1008 CCACCATGTGATGTCCTTCCTGCCGATGCCGGAGGTCGTGCGCACAAGTC chr5D_1014 CCACCGCGTGATGTCCTTCCTGCCCATGCCGGAGGCCGTGCGCACAAGTC chr5B_1124 -------------------------------------------ACAAGTG chr4A_1739 -------------------------------------------------- SNPs -------------------------------------------------- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 TGCTCTCGCCGAGGTGGCGCTATCTCTGGGTCTCTACTCCATACATCCGC chr5D_1_TraesCS5D01G011700 TGCTCTCGCCGAGGTGGCGCTATCTCTGGGTCTCTACTCCATACATCCGC chr5A_1 TGCTCTCGCCGAGGTGGCGCTATCTCTGGGTCTCTACTCCATACATCCGC chr5D_854 TGCTCTCGCCGAGGTGGCTTAATCTCTGGGCCTCTACGCCATACATCCGC chr5A_858 TGCTCTCGCCAAGGTGGCGTAATCTCTGGGCCTCTGCGCCATACATCCGC chr5D_1008 TGCTCTCGACGAGGTGGCGCGGTCTCTGGGCCTCTACGCCATACGTCCGC chr5B_1008 TGCTCTCGACGAGGTGGCGCAATCTCTGGGCCTCTACGCCATACATCCGC chr4A_1008 TGCTCTCGCCGAGCTGGCGCTATCTCTGGGCATCTACGCCATACATCCGC chr4A_1008 TGCTCTCGCCGAGCTGGCGCTATCTCTGGGCATCTACGCCATACATCCGC chr2D_1008 TTCTCTCACCAAGATGGCGCAACCTTTGGTACTCTACACCATTCATCCGC chr5D_1014 TGCTCTCGCCGAGCTGGCGCTATCTCTGGGCATCTACTCCATACATCCGC chr5B_1124 TACTCTCGGCGAGGTGGCACAATCTCTGGGCTTCTACTCCATACATCCAC chr4A_1739 -------------------------------------------------- SNPs -------------------------------------------------- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 ATTGACCACCAGGACTTCATGGATGACAGC---AAGTTCAAGAATTTTGG chr5D_1_TraesCS5D01G011700 ATTGACCACCAGGACTTCATGGATGACAGC---AAGTTCAAGAATTTTGG chr5A_1 ATTGACCACCAGGACTTCATGGATGACAGC---AAGCTCAAGAATTTTGG chr5D_854 ATCGACCACCAGGACTTTATGGATGACGGC---AAGCTGAAGAAATTCGG chr5A_858 ATCGACCACCAGGACTTTATGGATGACGAC---AAGCTGGAGAAATTCGG chr5D_1008 ATCGACCACCAAGACTTCATGGATTACGGC---AAGCTGAAGAAGTTTGG chr5B_1008 ATCAACCACCATGACTTTAAGGATTACGGC---AAGCTGAAGAAGTTCGG chr4A_1008 ATCAACCACCACGACTTCATGGATGACAACGAAAAGATGGAGAAGTTCGG chr4A_1008 ATCAACCACCACGACTTCATGGATCATAACGAAAAGATGGAGAAGTTCGG chr2D_1008 ATCGACAGCCAAGATTTCGTGGATAAACGG---AAGCTGGAGAATTTCGG chr5D_1014 ATCGACCACCACAACTTCACGGATGACAACGAAAAGATGGAGAAGTTCGG chr5B_1124 ATCGACCACTAGGACTTCATGAATCACCAG---AAGCTGGAGAAGTTCGG chr4A_1739 -------------------------------------------------- SNPs ------------------------------------S------------- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 GAACCGCCTGCTGATCTTACGTGACGGCGCTACTTCCTTGGATGAAGCCC chr5D_1_TraesCS5D01G011700 GAACCGCCTGCTGATCTTACGTGACGGCGCTACTTCCTTGGATGAAGCCC chr5A_1 GAACCGCCTGCTGCTCTTACGTGACGGTGCCACTTCCTTAGATGAAGCCC chr5D_854 GGACCGCCTGCTGCTCATGCGCGACAGAACTACTTCCTTGGATAAAGCCT chr5A_858 GGACCGCCTGCTGCTCA------------CTACTTCCTTGGATAAAGCCT chr5D_1008 GGACCACCTGCTACTCTTGTGCGACGGCGCTACTTCCTTGGATGAAGCAT chr5B_1008 GGACCACCTGCTACTCTTGCGGGACGGTGCTACTTCCTTGGATGAAGCCC chr4A_1008 GGACCGCTTGCTGCTCTTGCGCGACAGCACTGCTTCCTTGGATGAAGCCC chr4A_1008 GGACCGTTTGCTGCTCTTGTGCGACAGCACTGCTTCCTTGGATGAAGCCC chr2D_1008 GGACTGCTTGCTGCTCTTGCATGACCGTACCACTTCCTTGGATGAAGCCC chr5D_1014 GGACCGCCTGCTGCTCTTGCGCGACAGCACTGCTTCCTTGGATGAAGCCC chr5B_1124 GTACCACCTGCTGCTCTTGCGTGATAACACTACTTCCTTGGATGAAGTCC chr4A_1739 -------------------------------------------------- SNPs -------------S------------------------------------ forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 GGATCTCTGCCCACAATGTTGTTCGTGGTACATCGTGGTGTGAGTGGATT chr5D_1_TraesCS5D01G011700 GGATCTCTGCCCACAATGTTGTTCGTGGTACATCGTGGTGTGAGTGGATT chr5A_1 GGATCTCTGCCCACAATGTTGTTGATGGTACAACGTGTTGTGAGTGGATC chr5D_854 GGATCTCTGTGCACCATGTTGCTGATAGGACCATGTGTTATGAGTGGATT chr5A_858 GGATCTCTGTGCACCATGTTGTTGACACGACCTTGTGTTGTGACTGGATT chr5D_1008 GGATCTTTGCCAACAATGTTGA---TACTTTCACGTGTTGTGAGTGGGTT chr5B_1008 GGATCCTTGCCAACAATGTTGA---TACTTTCACGTGTTGTGAGTGGGTT chr4A_1008 GGATCATTGACCACTCGGTTGC---TAGTACCACATGTACTGTGTGGATT chr4A_1008 GGATCATTGACCACTCGGTTGC---TAGTACCACATGTACTGTGTGGATT chr2D_1008 GAATCTCTGCCCACTGCGTTAA---TGATACCAAATGTTCTGTGTGGATT chr5D_1014 GGATCATTGACCACTCGGTTGC---TAGTACCACATGTACTGTGTGGATT chr5B_1124 GGATCTCATCCCCCGATGTTAA---TAGTATCGCGTGTTGTGAGTGGATT chr4A_1739 -------------------------------------------------- SNPs -----------------------SS------------S------------ forward_149 -------------------------------------------------- reverse_1324 -----------------------CGTGGTACATCGTGGTGTGA------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 CGTCATGCCATCATGCACAAAGTTCGTCTACTTCATGTTTCTGCATATGC chr5D_1_TraesCS5D01G011700 CGTCATGCCATCATGCACAAAGTTCGTCTACTTCATGTTTCTGCATATGC chr5A_1 CGTCATGCCATCATGCACAAAGTTCGTCTGCTTCATGTTTCTGCATATGC chr5D_854 CGTCATGCCATCATGCACAATGTTCGTCTCCTTCATGTTTCTGGATCTGT chr5A_858 CGTCATGCCATCATGCATAAAGTTCGTCTCCTTCATGTTTCTGCATCTGC chr5D_1008 CGTCATGCCATCATGAAAAAAGCTCGTCTCCTTCATGTTTCTGGATATGC chr5B_1008 CGTCATGCCATCATGCAAAAAGCTCGTCACCTTCATGTTTCTGGATATGC chr4A_1008 CGTCATGTCATCATGCACAAAGTTCGTCACCTCCATGTTTCCGGATTGGG chr4A_1008 TGTCATGTCATCATGCACAAAGTTCGTCACCTCCATGTTTCCGGATTGGG chr2D_1008 CGTCATGCCATCATGCACAAAGTTCGTCTCCTTCATATTTCTGGATCTCT chr5D_1014 CGACATGTCATCATGCACAAAGTTCGTCACCTCCATGTTTCCGGATTGGG chr5B_1124 CGACATGCCATCATGCACAAAGTTCGTCTCCTTCATGTTTCTGGAACTGT chr4A_1739 -------------------------------------------------- SNPs -----------------------------S-------------------- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 CCCATTGGATAGCACAGCCATGTTTCCTTCACAGCACCTCAAAATAGTCA chr5D_1_TraesCS5D01G011700 CCCATTGGATAGCACAGCCATGTTTCCTTCACAGCACCTCAAAATAGTCA chr5A_1 CCGTTTGGATAGCACAGCCATGTTTCCTTCACAGCACCTCAAAATAGTCA chr5D_854 CCTTTTGGATAGCGCAGCCATGTTTCCTTCATAGCACCTCAGAACAGTCA chr5A_858 CCTTTTGGATAGCACAGCCATGTTTCCTTCACAGCACCTCAAAACAGTCA chr5D_1008 CCGTTTGGATAGTACAGCCATGTTCCCTTCTCAGCACCTCAAAACAATCA chr5B_1008 CCTTTTGGATAGCACAGCCATGTTTCCTGCTCAGCACCTCAAAACAATCA chr4A_1008 CCATCTGGATAGCTCAGCCATGCCTCCTTCTAACCACCTCAAAACAATCA chr4A_1008 CCATCTGGATAGCTCAGCCATGCCTCCTTCTAACCACCTCAAAACAATCA chr2D_1008 CAGTTTGGATAGGACAGCAATCTTTCCTTCTCGGCACCTCAAAACAATCA chr5D_1014 CCATCTGGATAGCTCAGCCGTGCCTCCTTCTAACCACCTCAAAACAATCA chr5B_1124 CCTTCTGGATAGCACATCCATGATTTCTTCTCAGCACCTCAAAACAGTCA chr4A_1739 -------------------------------------------------- SNPs --SS---------------------------------------------- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 GGCTCCAATTTAATTTGTTGGAACATGGGTTCTTTAGGCAGCTGAACTGT chr5D_1_TraesCS5D01G011700 GGCTCCAATTTAATTTGTTGGAACATGGGTTCTTTAGGCAGCTGAACTGT chr5A_1 GGCTCAAATCTAACTTGTTGAAACATGGATTCTTTAGGCAGCTGAACTGC chr5D_854 GGCTCCGATATAACTTGTTGAGACATGGGTTCTTTAGGCCACTGAACTGT chr5A_858 GGCTCCAATATAACTTGTTGAGACATGGGTTCTTTAGGCCACTGAACTGT chr5D_1008 GGCTCCAATCTCTCGTGTTGAGAGGTGGGTTCGTTAGGCTGCTGAACTGC chr5B_1008 GGCTCCGATCTCTCGTCTTGAGAGGGGGGTTCGTTAGGCTGCTGAACTGC chr4A_1008 GGCTCCAATTTGTCATATTGGGACATGGGCTCTTTAGGCCGCTCAACTAC chr4A_1008 GGCTCCAATTTGTCATATTGGGACATGGGCTCTTTAGGCCGCTCAACTAC chr2D_1008 GGCTCCAATCTGTCATGTTGAAACATGGGTTATTTAGGCCTCTGAACTAC chr5D_1014 GGCTCCAATTTGTCATATTGGGAGATGGGCTCTTGAGGCCGCTCAACTAC chr5B_1124 GGCTCCAATCTAGCTTGTTGAGACATGGATTCTTTAGGCCGCTGAACTGC chr4A_1739 -------------------------------------------------- SNPs -------------S------------------------------------ forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 GTCTGCTCAGTGCTTGAACATTTAGAGCTGGAGGGTTGCGGTTTGTCTGA chr5D_1_TraesCS5D01G011700 GTCTGCTCAGTGCTTGAACATTTAGAGCTGGAGGGTTGCGGTTTGTCTGA chr5A_1 GACTGCTCAGTGCTTGAACATTTAGAGCTGGAGGGTTGCGGTTTGTCTGA chr5D_854 GACTGCCCAGTGCTTGAGCATTTAGAGCTGGAGCATTGTGGTTTGTGGGA chr5A_858 GACTGCCCAGTGCTTGAGCATTTAGAGCTGGAGCATTGTGGTTTGTGGGA chr5D_1008 GACTGCCCAGTTCTTGAACATTTAGAGATAGAGCAGAGCGATTTGTGGGA chr5B_1008 GAGTGCCCAGTTCTTGAACATTTAGAGATAGAGCAGAGCGATTTGTGGGA chr4A_1008 GACTGCCGAGTGCTTCAACTTCTACAGCTGGAGGATTGCGTTTTGGTTGA chr4A_1008 AACTGCCGAGTGCTTCAACTTCTACAGCTGGAGGATTGCGTTTTGTTTGA chr2D_1008 GACTGCCCTGTGCTTGAACATTTAGAGCTGGAGTGGTGTGGTTTCTGTGA chr5D_1014 GACTCCCGAGTGCTTCAACTTCTACAGCTGGAGGATTGCGTTTTGGTTGA chr5B_1124 GACTGCCCAGTGCTTGAACATTTAGAGCTGGAAAACTGCGGTTTGTGGGA chr4A_1739 -------------------------------------------------- SNPs -S------------------------------------------------ forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 AGTAAACGAGATCTCATCGAGGTCACTCAAGGTTCTATATATCATTTGCT chr5D_1_TraesCS5D01G011700 AGTAAACGAGATCTCATCGAGGTCACTCAAGGTTCTATATATCATTTGCT chr5A_1 CGTAAACGAGATCTCATCGAGGTCCCTCAAGGTTCTACATATCATTCGCT chr5D_854 CCTGAAGGAGATATCATCGAGGTCACTCAAGGTTCTACGTATCATTGGTT chr5A_858 CCTGAAGGAGATATCATCGAGGTCACTCAAGGTTCTACGTATCATTGGTT chr5D_1008 CCTGAACAAGATCTCATCAAGGTCACTCAAGGTTCTTCATCTCATTCGCT chr5B_1008 CCTGAAGGAGATCTCATCGTGGTCACTCAAGGTTCTTCATCTCATTCGCT chr4A_1008 CCTGAAGGAGATCTCATCCAGGTCACTCAAGGTTTTGCATATTATTAACT chr4A_1008 CCTGAAGGAGATCTCATCCAGGTCACTCAAGGTTTTGCATATTATTAACT chr2D_1008 CCATGAGGAGGTCTCATCAAGGTCACTCAAGGTTCTGCATATCAGTGACT chr5D_1014 CCTGAAGGAGATCTCATCCAGGTCACTCAAGGTTCTGCATATCATTAACT chr5B_1124 CTTGAAGGAGATCTCATCGAGGTCACTCAAGGTTCTACTTATCATTGGTT chr4A_1739 -------------------------------------------------- SNPs S------------------------------------S--------S--- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 GCCTTATCGTCAAGGGCCTCGTAATTTGTGCTAGCAACCTTACCCATCTC chr5D_1_TraesCS5D01G011700 GCCTTATCGTCAAGGGCCTCGTAATTTGTGCTAGCAACCTTACCCATCTC chr5A_1 GCCATATCGTTAAGGGCCTCGTAATTTGTGCTAGCAACCTTACCCATCTC chr5D_854 GCGATATCTTTGATGGTCTCGTGATTTGTGCTAGCAACCTTACCCATGTC chr5A_858 GCCATATCTTTGGTGGTCTCGTGATTTGTGCTAGCAACCTTACCCATGTC chr5D_1008 GCCTTATCATCAAGGGTCTCGTAATTTGTGCTAGCAACCTTACTCATCTC chr5B_1008 GCCTTATCATCAAGGGTCTCGTAATTTGTGCTAGCAACCTTACTCATCTC chr4A_1008 GCCTTATCACCGGGAGTCTCCTGATTTGTGCTAGCAATCTTACCGATCTC chr4A_1008 GCCTTATCACCGGGAGTCTCCTGATTTGTGCTAGCAATCTTACCCATCTC chr2D_1008 GCCACCTTACCTCCGGTCTCCTGATTTGTGCTAGGAACCTTACCCATCTC chr5D_1014 GCCTTATCACCGGGAGTCTCCTGATTTGTGCTAGCAATCTTACCCATCTC chr5B_1124 GCCATATCTTCGATGGTCTCGTGATTTGTGCTAGCAACCTTACCCATGTC chr4A_1739 -------------------------------------------------- SNPs -------------------------------------------------- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 TCTATCGTTGACCCAAGATGTCGTTCTGGTGC----TATAGTAACTAGGG chr5D_1_TraesCS5D01G011700 TCTATCGTTGACCCAAGATGTCGTTCTGGTGC----TATAGTAACTAGGG chr5A_1 TCTATCGTTGAACCAAGATGTCGTTCTGGTGC----TATAGTAACTAGGG chr5D_854 TCTATTGTTGACCCAAGCTGTGATACTGGTGC----TATAGTAACTAGGG chr5A_858 TCTATCGTTGACCCAAGGTGTGATCCTGGTGC----TATAGTAATTAGGG chr5D_1008 TCTATCGATGAACAATCATGTTATTCTAGCGC----TGTAGTAGCTAGGG chr5B_1008 TCTATCGATGAACAATCATGTCATTCGGGCGC----TGTAGTAACTAGGG chr4A_1008 TCTATCCTAGACACGCATAGTCATTCCGGAGC----TATATTAGTCAGGG chr4A_1008 TCTATCCTAGACACGCATAGTCATTCCGGAGC----TATATTAGTCAGGG chr2D_1008 TCTATCCTTGACACAGAAAT------TGGTGG----TATAGTAACCAGTG chr5D_1014 TCTATCCTAGACATGCATAGTCATTCCGGAGC----TATATTAGTTAGGG chr5B_1124 TCTATCGTTGACCCAAGCTTTGATCCTGGTGCTATATATAGTAACTAGGG chr4A_1739 -------------------------------------------------- SNPs -------------------------------------------------- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 ATCTGCCTT-CTCTAGTAACAGCTTTGGTTAGTCTGAGAT---CTGACAA chr5D_1_TraesCS5D01G011700 ATCTGCCTT-CTCTAGTAACAGCTTTGGTTAGTCTGAGAT---CTGACAA chr5A_1 ATCTGCCTT-CTCTAGTAACAGCTTCAGTTAGTCTGAGAT---TCGACGA chr5D_854 ATCTGTCTT-CTCTAGTAACAGCCTCGATTAGTCTGACAT---CTAGGTT chr5A_858 ATCTGTCTT-CTCTTGTAACAGCCTCGGTTAGTCTAACAT---CTAGGTT chr5D_1008 ATCTGTCTTCCTCTAGTAACAGCTTCGGTTAGTCTGAGGT---ATGACTA chr5B_1008 ATCTGTCTT-CTCTAGTAACAGCTTCGATTAGACTGAGGT---ATGACTA chr4A_1008 ATCTGTCTT-CTCTAGTAACAGCCTTTGTTAGTGTAAGG----------- chr4A_1008 ATCTGTCTT-CTCTAGTAACAGTCTTTGTTAGTGTAAGG----------- chr2D_1008 ATCTGTCTT-GTCTGGTAACAGCTTTGATTAGTCTAATACCCAAATATTT chr5D_1014 ATCTGTCTT-CTCTAGTAACAGCCTTTGTTAGTGTAAGG----------- chr5B_1124 ATCCGTCTT-CTCTAGTGACAGCCTCGGTTAGTCTAACATCTACTAGGTT chr4A_1739 -------------------------------------------------- SNPs ------------------------------------------------S- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 TTTTCATTATAAGGAAAACACAATACTGGGTCATGG------TCTACTTG chr5D_1_TraesCS5D01G011700 TTTTCATTATAAGGAAAACACAATACTGGGTCATGG------TCTACTTG chr5A_1 GTTTCATTATAAGGAAAACACAATGCTGGGTCATGG------TCTACTTG chr5D_854 TCATTATTATAAGCGAAACACAATAGCGGATCATCG------TCTACTTA chr5A_858 TCATTATTATAAGCGAAACACAATAGCGGATCATCG------TCTACTTG chr5D_1008 CTATCATAGTGAAGGCGGCTCAATACTGGATTATAG------TCTACTTG chr5B_1008 CTATCATACTTCAGGCGGCTCAATACTGGATTATCG------TCTACTTG chr4A_1008 -------------------ACAATAGAGGGCCATGG------TCTACTTG chr4A_1008 -------------------ACAATAGAGGGCCATGG------TCTACTTG chr2D_1008 TCATCATAAGT------ACACAGTAGTGGATCATCATCTACATCTACTTG chr5D_1014 -------------------ACAATAGAGGGCCATGG------TCTACTTG chr5B_1124 TCATTATTATAAGCGAAACGCAATAGCGGATCATCG------TCTACTAG chr4A_1739 -------------------ACAATAGAGGGCCATGG------TCTACTTG SNPs -------------------------------------------------- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 ATGGCCTCTCACATGCCACAACCTTGCAGTTGCATGCACCATTACCTGAG chr5D_1_TraesCS5D01G011700 ATGGCCTCTCACATGCCACAACCTTGCAGTTGCATGCACCATTACCTGAG chr5A_1 ATGGCCTCTCACATGCCACGACCTTGCAGTTGCATGCACCATTACCTGAG chr5D_854 ATGGCCTCTCACATGCCACCACCTTGGAGTTGCATGCACCATTACCTGAG chr5A_858 ATGGCCTCTCACATGCCACCACCTTGGAGTTGCATGCACCATTACCTGAG chr5D_1008 ATGGCCTCTCACATGCCACAACCTTGGAGTTGCATGCTCCGTTACCTGAG chr5B_1008 ATGGACTCTCAAATGCCACAACCTTGGAGTTGCATGCGCCCTTACCTGAG chr4A_1008 ATGGCCTCTCACATGCCACAACCTTGGAGTTGCATGCACCATTACTTGAG chr4A_1008 ATGGCCTCTCACATGCCACAACCTTGGAGTTGCATGCACCATTACTTGAG chr2D_1008 ATGGCCTTTCACATGCCACAACGTTGGAGCTGCTTGCGCCATTACATGAG chr5D_1014 ATGGCCTCTCACATGCCACATCCTTGGAGTTGCATGCACCATTACTTGAG chr5B_1124 ATGGCCTCTCACATGCCACCACCTTGGAGTTGCATGCACCATTACCTGAG chr4A_1739 ATGGCCTCTCACATGCCACAACCTTGGAGTTGCATGCACCATTACTTGAG SNPs -------------------------------------------------- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 GTACGAACTAGTTCTTTTCT-TTTCATGTGCATACAAGTT---------- chr5D_1_TraesCS5D01G011700 GTACGAACTAGTTCTTTTCT-TTTCATGTGCATACAAGTT---------- chr5A_1 GTACGAACTAGTTCTTTTCT-TTTCATGTGCATACAAGTT---------- chr5D_854 GTACAAACTAGTTCTTCTTTGCATC------------------------- chr5A_858 GTACAAACTAGTTCTTCTTTTCATC------------------------- chr5D_1008 GCACGAACTACATCCTTTTATTTTCATATACATA-AAGTT---------- chr5B_1008 GTACGAACTACATCCTTTGATTTTCATATACATG-AAGTT---------- chr4A_1008 GTACGAACTAGTTCTTTTTCTTTTCACATTCATA-CACGTTTAGATGAAT chr4A_1008 GTACGAACTAGTTCTTTTTATTTTCACATTCATA-CACGTTTAGATGAAT chr2D_1008 GTAAGAATGGGTTCTTTTCTGTTTC------------------------- chr5D_1014 GTACGAACTAGTTCTTTTTCTTTTCACATTCATA-CACATTTAGATGAAT chr5B_1124 GTACAAACTA---------------------------------------- chr4A_1739 GTATGAACTAGTTATTTTTCTTTTCACATTGATA-CACGTTTAGATGAAT SNPs -------------------------------------------------- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 -------------------TCAATGAATGTACTTGCTTGCTTAGTTAGAT chr5D_1_TraesCS5D01G011700 -------------------TCAATGAATGTACTTGCTTGCTTAGTTAGAT chr5A_1 -------------------TCGATGAACGTACTTGCTTGCTTAGTTAGAT chr5D_854 ----ATATCCATACAAGCCTAGATGAATATATTTGCTTCCCTAGTTAGAT chr5A_858 ----ATAT------------------------TTGCTTCCTTAGTTAGAT chr5D_1008 -------------------TAGATGGATATATTTGCTTCCTTAGTTAGAT chr5B_1008 -------------------TAGATGAATGTATTTGCTTCCTTAGTTAGAT chr4A_1008 ATCTATAT------------------------TTGATTCCTTAGTTAGAT chr4A_1008 ATCTATAT------------------------TTGATTCCTTAGTTAGAT chr2D_1008 -------------------------------------------------- chr5D_1014 AT----AT------------------------TTGAGCCCTTAGTTAGAT chr5B_1124 -------------------------------------------------- chr4A_1739 ATCTATAT------------------------TTCATTCCTTAGTTAGAT SNPs ---------------------S---------------------------- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 TTTGTTATATACTGCCTCCTC---------------------TTCACTTT chr5D_1_TraesCS5D01G011700 TTTGTTATATACTGCCTCCTC---------------------TTCACTTT chr5A_1 TTTGTTATATAACTGCTTCTCTGA-CTTAAATTCAGAGGATCTTCACTTT chr5D_854 TTTGTTATATAGTTGCTTCTCGGA-TTTAAATTCAGAGGATCTTCGCG-T chr5A_858 TCTGTTATATAGTTGCTTCTCGGA-TTTAAATTCAGAGGATCTTTGCG-T chr5D_1008 TT-GTTATGTAGTTTTTTCTCGGA-TTTAAATCCAGAGGATCTTCACTTT chr5B_1008 TT-GTTATGTAGTTGCTTCTCGGA-TTTAAATCCAGAGGATCTTCACTTT chr4A_1008 TTTCTTATATAGTTGCTTCTCGGG-TTTAAATC---------TTAACC-T chr4A_1008 TTTCTTATATA--------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 TTTCTTATGTAGTTGCTTCTCGGGGTTTAAATC---------TTAACC-T chr5B_1124 -------------------------------------------------- chr4A_1739 TTTCTTATATAGTAGCTTCTCGGGGTTTAAATC---------TTAACC-T SNPs -----------S-SS--S-------------------------------- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 TTCCAGCTTGTTTTCTTTTCCCTCCTATGTGCTGGTACTATTTTAGCAAG chr5D_1_TraesCS5D01G011700 TTCCAGCTTGTTTTCTTTTCCCTCCTATGTGCTGGTACTATTTTAGCAAG chr5A_1 TTTCAGCTTACTTG-TTTTCCCTCCTATGTGCTGGTATTATTTTAACAAG chr5D_854 TTTGAGCTTACTTG-TGTTCTATCTTATGTGCTATTCTTATTTTAACAAG chr5A_858 TTTGAGCTTACTTG--TTTCTGTCTTATGTGCTGGTCTTATTTTAACAAG chr5D_1008 TTCAAACTATTCAACTCACTGT------------------------CAAG chr5B_1008 TTCAAACTATTCAACCCACTGT------------------------CAAG chr4A_1008 TTTCAGCTTACTTG-TTTCCCCTCCTACGAGCTGGTATTATTTTAATAAG chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 CTTCAGCTTACTTG-TTTCCCCTCCTACGAGCTGGTATTATTTTAATAAG chr5B_1124 -------------------------------------------------- chr4A_1739 TTTCAGCTTACTTG-TTTCCCCTCCTATGAGCTGATATTATTTTAATAAG SNPs ---------S---S-----------------------S-------S---- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 CTAGTTAACTTGAGAATATT---GAATAATGAAACTTCTCAACTCGATGT chr5D_1_TraesCS5D01G011700 CTAGTTAACTTGAGAATATT---GAATAATGAAACTTCTCAACTCGATGT chr5A_1 CTAG----CTTGAATATATC---GAATAATCAAACTACTCAACTCGCTGT chr5D_854 CTAG----CATGGAAATGTC---GAATGATCAAACTATTCAACTCACTGT chr5A_858 CTAG----CATGGAAATATC---GAGTAATCAAACTATTAACCTCACTGT chr5D_1008 CTAG----CATAGAAATATC---AAATAATCAACCTATTCAACTCACTCA chr5B_1008 CTAG----CATAGAAATATC---GAATAATCAAGCTATTCAACTCACTCT chr4A_1008 CTAG----CATGGAAAAATCATGAAATGATCAAACTATTCTACTCACTGT chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 CTAG----CATGGAAAAAACATGAAATGATCAAACTATTCTATTCACTGT chr5B_1124 -------------------------------------------------- chr4A_1739 CTAG----CATGGAAAAATCATGAAATGATCAAACTATTCTACTCACTGT SNPs ----SSSS-----S-----S----------S-----S---------S--- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 C------ATCATTTTAATTTCATC------------AAAGCTCACACTCG chr5D_1_TraesCS5D01G011700 C------ATCATTTTAATTTCATC------------AAAGCTCACACTCG chr5A_1 C------ATCATTTTGATTTCACT------------AAAGTTAGCACTCG chr5D_854 CTTTG--ATCATTTTGATTTTACCTCTGATGTATATGAAGGTCTCGTTCG chr5A_858 CTTTG--ATCATTTCGATTTTACCTCTGATATATATGAAGGTCTCATTCG chr5D_1008 CTTTG--ATAATTTTGATGTCATCTCCGATGAATACAAAGCTCACATTCG chr5B_1008 CTTTG--ATCATTTTGATGTCGTCTCCGATGAATACGAAGCTCACATTTG chr4A_1008 CTTCACCATCATTTTGATTTCATCTGGGATGAATATGAAGCTTTTGTTGC chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 CTTTG--ATCATTTTGATTTCATC------------AACC----TGTTGC chr5B_1124 -------------------------------------------------- chr4A_1739 CTTCACCATCATTTTGATTTCATCTGGGATGAATATGAAGCTTTTGTTGC SNPs ---------------S---------------------------------- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 AGAGAGGCCTGCGGACATGCCCGGTGTTCAGCAGCCTGACAAGTCTGGTA chr5D_1_TraesCS5D01G011700 AGAGAGGCCTGCGGACATGCCCGGTGTTCAGCAGCCTGACAAGTCTGGTA chr5A_1 AGAGAGGTTTGCGGACATGCCCGGTGTTCAGCAACCTGACAAGTCTGGTG chr5D_854 AGAGGAGTTTGAGGACATGCCCGATGTTCAGCAACCTGACAAGCCTGGTG chr5A_858 AGAGGAGTTTGAGGACATGCGCTATGTTCAGCAACCTGACAAGCCTGGTG chr5D_1008 AGATAGATTTGCTGAGATGCCCGGTGTTTAGCAACCTGACAAGTCTGGTC chr5B_1008 AGAGAGATTTGCTGACATGCCTGGTGTTTAGCAACCTGACAAGTCTGGTG chr4A_1008 AGAGAGGTTTGTGGATATGCCCAATGTTCAGCAACCTGACAAGCCTAGTG chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 AGAGAGGTTTGTGGATATGCCCAATGTTCAGCAACCTGACAAGCCTAGTG chr5B_1124 -------------------------------------------------- chr4A_1739 AGAGAGGTTTGTGGATATGCCCAATGTTCAGCAACCTGACAAGCCTAGTG SNPs -------SS------------------------S---------------S forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 TTGGGTGATTGGTGCATGGCTGCTGACTTCTACCCGCTGCGTCGCATTCT chr5D_1_TraesCS5D01G011700 TTGGGTGATTGGTGCATGGCTGCTGACTTCTACCCGCTGCGTCGCATTCT chr5A_1 TTGGGTGATTGGTGCATGGCTGCTGACTTCTATCCGCTGCGTCACATTCT chr5D_854 CTGGGCGAGTGGTGCATGGCTGCTGACTTCTACCCGCTGCTTCGCATCCT chr5A_858 CTGGGTGAGTGGTGCATGGCTGCTGACTTCTACCCGCTGCTTCGCATTCT chr5D_1008 CTGGGTGATTGGTGCATGGCTGCTGACTTGTACCCGCTGCGTCGCATTCT chr5B_1008 CTGGGTGATTGGTGCATGGCTGCTGACTTGTACCCGCTGCGTCGCATTCT chr4A_1008 CTGGGCCATTGCTGCATGGCTGCTGATTTCAACGCGCTGCTTCGCATTGT chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 CTGGGCCATTGCTGCATGGCTGCTGATTTCGACGCGCTGCTTTGCATTCT chr5B_1124 -------------------------------------------------- chr4A_1739 CTGGGCCATTGCTGCATGGCTGCTGATTTCGACATGCTGCTTCGCATTCT SNPs -------------------------------------------------- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 ACATCGCTCGCCCAAGCCGAAGGAGCTAAGTTTTAAGCTCGAAATGGTAC chr5D_1_TraesCS5D01G011700 ACATCGCTCGCCCAAGCCGAAGGAGCTAAGTTTTAAGCTCGAAATGGTAC chr5A_1 ACATCGCTCGCCCAAACTGAAGGAGCTAAGTTTCAACCTCGAAATGGTAC chr5D_854 CCAGCGCTCGTGCAAGCTGAAGGAGCTAAAACTTAAGCTC---------- chr5A_858 CCAGCGCTCGTGCAAGCTGAAGGAACTAAAACTTAAGCTCACAATGGTA- chr5D_1008 ACATCGCTTGCCCAAGCTGAAGGAGCTAAGTTTTAAGCTTGAAATGGTAC chr5B_1008 ACATCGCTCCCCCAAGCTGAAGGAGCTAAGTATAAAGCTTGAAATGGTAC chr4A_1008 CCAGCACTCGCCCAAGCTGAAGGAGTTGACTTTTAAGCTCGAAAGGGTAT chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 CCAGCGCTCGCCCAAGCTGAAGGAGTTGACTTTTAAGCTCGAAAGAGTAC chr5B_1124 -------------------------------------------------- chr4A_1739 CTAGCGCTCGCCCAAGTTGAAGGGGTTGACCTTTAAGCCCGAAAGGGTAC SNPs -----------------S-------------------------------- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 CCACTCAGAACCATCTCTAAATACC----AGTTGACCTGCTGGAACAGCA chr5D_1_TraesCS5D01G011700 CCACTCAGAACCATCTCTAAATACC----AGTTGACCTGCTGGAACAGCA chr5A_1 CCTCTCAGAACCATCTCTAAATACC----AATTGACCTGCTGGAACAGCA chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 CCACTCAGAGCCATCTCTAAATACC----AAACGACCTGCTGGAACAGCA chr5B_1008 CCACTCAGAACC-------------------------------------- chr4A_1008 TTACTCGAAACCATCTCTAAATACG----AGTTGACCTGCCATAACAGTG chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 TCACTCGAAACCATCTCTAAATACGCGCGAGTTGACCTGCCATAACAGTG chr5B_1124 -------------------------------------------------- chr4A_1739 TCACTCGAAACCATCTCTAAATACG----AGTTGATCTGCT--------- SNPs -------------------------------------------------- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 GAACCTCTTGGGTCCTTACTG--ATATACTACCTTAATGTTGA----CAC chr5D_1_TraesCS5D01G011700 GAACCTCTTGGGTCCTTACTG--ATATACTACCTTAATGTTGA----CAC chr5A_1 GAACCTCTTGGGTCCTTACTG--ATATACTACCTTAATGTTGA----CAC chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 GAACCTCTTAGGCCCTTACTGATATATACTACCTTAATGTTGATTGACAC chr5B_1008 -------------------------------------------------- chr4A_1008 GAACCCCTTACTGACCCTTCC---------ACCTTAATGTTGA----CAC chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 GAACCCCTTACTGATCCTTCC---------ACCTTAATGTTGA----CAC chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs -------------------------------------------------- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 CCTGCAGGAGGAATGTAGAAAATGTAAGGAATTGGAATCTTCCAA----- chr5D_1_TraesCS5D01G011700 CCTGCAGGAGGAATGTAGAAAATGTAAGGAATTGGAATCTTCCAA----- chr5A_1 CCTGCAGGAGGAATGTAGAAAATGTAAGGAATTGGAATCTGCTTTGCCAT chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 TCTGCAGGAGGAATGTAG-------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 TCTACAGGTGCAATGTA--------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 TCTACAGGTGCAATGTATAA------------------------------ chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs ----------------------------------------S-SSS----- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 -------------------------------------------------- chr5D_1_TraesCS5D01G011700 -------------------------------------------------- chr5A_1 CATCAAGGGGAGCTCCGTCGTCAGGCGCAGGCAGCCACCCTTGCATCGAG chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs -------------------------------------------------- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 -------------------------------------------------- chr5D_1_TraesCS5D01G011700 -------------------------------------------------- chr5A_1 AGGATCAAGATCCACTGCCAGAAAGAAGATCCAAGGGTCGGTGCGTTGGT chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs -------------------------------------------------- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 -------------------------------------------------- chr5D_1_TraesCS5D01G011700 -------------------------------------------------- chr5A_1 GCAGGCATTGTTACTGGTCAGTGATGCGGAAATTGGCATCGAGCGTCGCT chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs -------------------------------------------------- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 -------------------------------------------------- chr5D_1_TraesCS5D01G011700 -------------------------------------------------- chr5A_1 GAACTATGTTAATCAAGACCTTGTTTTGTTTTGGGACCTGCCACAATTGG chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs -------------------------------------------------- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 -------------------------------------------------- chr5D_1_TraesCS5D01G011700 -------------------------------------------------- chr5A_1 TCAGTGCTAAGTTAGTTTTTTGAGACAAAGGTGTTTGGAGTTCCTATGTT chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs -------------------------------------------------- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 -------------------------------------------------- chr5D_1_TraesCS5D01G011700 -------------------------------------------------- chr5A_1 AATGAGAAAAGGGCCACACTCCTTGTCAGAAAGCAGCGGCGAAGTGAGTC chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs -------------------------------------------------- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 -------------------------------------------------- chr5D_1_TraesCS5D01G011700 -------------------------------------------------- chr5A_1 CCGATATCATGTTTTAGATAGTGGGTGCACACTCGTTGCGGTCGAATTTC chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs -------------------------------------------------- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 ----------------------------------------AACATAAACT chr5D_1_TraesCS5D01G011700 ----------------------------------------AACATAAACT chr5A_1 GCTAATATAATGGTGATGGTTTGATCTTAGCTAGTTGGTCAACATAAACT chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs -------------------------------------------------- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 AGTTTAGTGTTCAGGAGACATGATGGATTATGGTTGCTGGGTATTCTAGT chr5D_1_TraesCS5D01G011700 AGTTTAGTGTTCAGGAGACATGATGGATTATGGTTGCTGGGTATTCTAGT chr5A_1 AGTTGGGTGTTCAGGAGACATGATGGATTATGGTTGCTGGGTATTCTAGT chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs ----SS-------------------------------------------- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 TCTTCCAAAACGTTATATATCTAGTTGTGTTCTAGCCAACTATTGCATTG chr5D_1_TraesCS5D01G011700 TCTTCCAAAACGTTATATATCTAGTTGTGTTCTAGCCAACTATTGCATTG chr5A_1 TCTTCTGAAACGTTATATATGTAGTTGTGTTCTAGCCAACTATTGGATAT chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs -----SS-------------S------------------------S--SS forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 TTTTTTCCTTATCTGTATGTATGATGAGATCAGAGGAGCCGATAAAAGTG chr5D_1_TraesCS5D01G011700 TTTTTTCCTTATCTGTATGTATGATGAGATCAGAGGAGCCGATAAAAGTG chr5A_1 A-TTTTCCTTATCTGTATGTATGATGAGGTCAGAGGAGCCGATAAAAGTG chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs SS--------------------------S--------------------- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 TCGTTAGTGAAACTACCTTAATGTTGACACTATGGCAGGA---------- chr5D_1_TraesCS5D01G011700 TCGTTAGTGAAACTACCTTAATGTTGACACTATGGCAGGAATGTACCGCC chr5A_1 TCGTTAGTGAAACTACCTTAATGTTGACACTA--GCAGGAATGTACCGCC chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs --------------------------------SS---------------- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 -------------------------------------------------- chr5D_1_TraesCS5D01G011700 ATCTTCAAGGGCAGTGTCGGACTCAGGCAGCTATCCTTGCATTGACAGGA chr5A_1 ATCTTCAAGGGCAGTGTCGGACTCAGGCAGCTATCCTTGCATTGAGAGGA chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs ---------------------------------------------S---- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 -------------------------------------------------- chr5D_1_TraesCS5D01G011700 TCAAAATCTACTGCCAGGAAGAAAGATCCAACGGTCAGTGCGTGGCATTG chr5A_1 TCAAAATCTACTGCCAGGAAGAAAGATCCAACGGACCGATTGTCGGCGAT chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs ----------------------------------S-S-SSS--S-SSSSS forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 -------------------------------------------------- chr5D_1_TraesCS5D01G011700 CTACCGGTTGTCG------GTCTCTGATCTCTGTTAATCAAGAGCTTGTT chr5A_1 GCGAAAATCAGCATCGACTGTCTCTGATATCTGTTAGTCAGGAGCTTGTT chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs SSSSSSS-SSS-S---------------S-------S---S--------- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 -------------------------------------------------- chr5D_1_TraesCS5D01G011700 TTA-TTTTTAAGACCTGGCATCTTTGATGGGTGCTAAGTTAAAGAGCTGC chr5A_1 TTGTTTTTTAAGACCTGGCATCTTTGATCGGTGCTAAGTTAAAGAGCTGC chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs --S-------------------------S--------------------- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 -------------------------------------------------- chr5D_1_TraesCS5D01G011700 TGGTGACAGAAAGTGGTTGCCAAATGAGTGGGCATCATGTCTTCTGGTTC chr5A_1 TGGTGACAGAAAGTAGTTGCCAAATGAGTAGTCATCATGTCTTGTGGTTC chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs --------------S--------------S-S-----------S------ forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 -------------------------------------------------- chr5D_1_TraesCS5D01G011700 CAGAACCACCACCAGGTTTTAGATGATGTGTGTGTACTTGTTGCGATTGG chr5A_1 CAGAACCACCACCATGTTTTAGATGATGGGTGCGTACTTGTTGCGATTGG chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs --------------S-------------S---S----------------- forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 -------------------------------------------------- chr5D_1_TraesCS5D01G011700 AATTCGCTATATATGTGTCAATGTGTGCGATGTGAGACCACCTCCCCTGC chr5A_1 AATTCGCTATATAT------------------------------------ chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs --------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 --------------------ATGTGTGCGATGTGAGACCA---------- input_sequence_49186 -------------------------------------------------- chr5D_1_TraesCS5D01G011700 GTCTGAGCCAACAATAAGGAAAAGGTTCAGACTGAAAACTGCTTGCATCC chr5A_1 -------------------------------------------------- chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 -------------------------------------------------- chr5D_1_TraesCS5D01G011700 AAATTCTGTTTGTGCTTGATGGTACTTATAGATGGTAGAATCAGTTGCAG chr5A_1 -------------------------------------------------- chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 -------------------------------------------------- chr5D_1_TraesCS5D01G011700 CCTGTCAGATTTGATGGCTTTACAAATTCTGTGATTACCATTGTTCCAAA chr5A_1 -------------------------------------------------- chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 -------------------------------------------------- chr5D_1_TraesCS5D01G011700 AGAGGAATTTACTGGACTTGGAAACTTTGAAGTGGCCTCCATCCTAGAGG chr5A_1 -------------------------------------------------- chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 -------------------------------------------------- chr5D_1_TraesCS5D01G011700 TGTCGACCATACATGTAAGTTGACATGATGCCACCTTTTGAGATAAAAAA chr5A_1 -------------------------------------------------- chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 -------------------------------------------------- chr5D_1_TraesCS5D01G011700 AAAATACACTGATGGTCACTAAAGTTGAGGTCAAAGCACACTACAGTCAC chr5A_1 -------------------------------------------------- chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 -------------------------------------------------- chr5D_1_TraesCS5D01G011700 TGGACTTCGGAATACGCTCAATACGATAATTGAATACGAGTTGCGGTGAT chr5A_1 -------------------------------------------------- chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 -------------------------------------------------- chr5D_1_TraesCS5D01G011700 TATACGGTCACTGGCTCACCGTATTCTATACGCATGGCCCTTCGTTGACT chr5A_1 -------------------------------------------------- chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 -------------------------------------------------- chr5D_1_TraesCS5D01G011700 GGTCAAATAGCCCCATGCTCTCTCTGTTTGGAGGGACCAAAGTACATACA chr5A_1 -------------------------------------------------- chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 -------------------------------------------------- chr5D_1_TraesCS5D01G011700 TAGTTCTCATCTAACAACGTATAGCTCTCCTGAGCATCTAATTAATTAAA chr5A_1 -------------------------------------------------- chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 -------------------------------------------------- chr5D_1_TraesCS5D01G011700 CCATACATTGAAACTATGTAAAACATTTCAATGCAAAAACAAATGCGATC chr5A_1 -------------------------------------------------- chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 -------------------------------------------------- chr5D_1_TraesCS5D01G011700 ATAATCGCAATCAAGGTAACAATTGATCCAACGACATAATGATACCAAGC chr5A_1 -------------------------------------------------- chr5D_854 -------------------------------------------------- chr5A_858 -------------------------------------------------- chr5D_1008 -------------------------------------------------- chr5B_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr4A_1008 -------------------------------------------------- chr2D_1008 -------------------------------------------------- chr5D_1014 -------------------------------------------------- chr5B_1124 -------------------------------------------------- chr4A_1739 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_149 -------------------------------------------------- reverse_1324 -------------------------------------------------- forward_902 -------------------------------------------------- reverse_3371 -------------------------------------------------- input_sequence_49186 ----------------------------------------------- chr5D_1_TraesCS5D01G011700 CTCTGTATGAATGGCATATTTTCTAATCTTTCTAATCTTCAAGCGCA chr5A_1 ----------------------------------------------- chr5D_854 ----------------------------------------------- chr5A_858 ----------------------------------------------- chr5D_1008 ----------------------------------------------- chr5B_1008 ----------------------------------------------- chr4A_1008 ----------------------------------------------- chr4A_1008 ----------------------------------------------- chr2D_1008 ----------------------------------------------- chr5D_1014 ----------------------------------------------- chr5B_1124 ----------------------------------------------- chr4A_1739 ----------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_149 ----------------------------------------------- reverse_1324 ----------------------------------------------- forward_902 ----------------------------------------------- reverse_3371 -----------------------------------------------