>input_sequence_48956
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------ATGGAGACCGGGGGTAGCAAGCGGGAAGGGGACTGCCCCGGGCAGGAAAGGTGAGCGCCGG
AACCACTCCCTCCACCCCCACCTCTATCCC-GCCGCGTTTTCGCTCGAATCTACGGGCATTGCTGAGGCGGCGGCGGCGC
GCCGTCGCCGCGACATGGAATTTGCGCGTGTTTCCGCGGTTGCTCGGTACCGTGAAACATGCCCATCTAAAGTAGCTATC
CGCTGTTCGTTTCCTGTTACCGCGGCGCGTGTCGGACTAGTCGTAGGTCGGCGGTGGTCGCCCTAGGTCGGCGGCCGCCC
TTCAGTTCGGTTCGCCGGGTTTCCGCCGGCTACAGAATTATGGTTTCCTCCGCCTTCTCGGTTGGGGACTGGAGTTCGGC
GAGATTCAGAGCGGCGCGTGGCGAACTGTCGGTGTTAGGTCGGGTGAGGCGGCGCCGTCCTCTGAATCGGATGCAGAAGT
CCCC-----------ATGTCCATGGCGGCGGTCGGGGATTGCCCATGCCATGGCGGTACGATTTTGCTGGTGCATAGCAT
CATAAACTATATCCTCGGGGGCTCGATTGCGGTTGGTACCCAACCCAAGTGATAATAATCTCCTTGAC-TTTTTCCACCA
AGGAAACAAGGATAGCCCTGCTTCGTTCTGTTTTAGATTTATACGACTTTTTTTTA---TGAGAAAGATTTATATGACTG
G--CTGGTTATGTTTTTTGTTTCAAAGTGTTTTCA-CTTGTGATATGGATTGCCTTGATGAACAGGAAGAAGAAAGTGCG
CAGGAGAAGCACCGGTCCTGATTCGGTTGCTGAAACCATCAAGAAGTGGAAGGAGGAAAACCAGAAGCTCCAGCAAGAGA
ATGGATCCCGGAAAGCACCGGCCAAGGGTTCCAAGAAAGGGTGCATGGCAGGGAAAGGAGGTCCAGAGAATTCAAACTGC
GCTTACCGCGGTGTGAGGCAGAGGACGTGGGGGAAATGGGTTGCTGAGATCCGTGAGCCCAACCGTGGCAATCGGCTGTG
GCTTGGTTCATTCCCTACTGCAGTCGAAGCTGCACGTGCATATGATGATGCGGCAAGGGCAATGTATGGCGCCAAAGCAC
GTGTCAACTTCTCAGAGCAGTCCCCGGATGCCAACTCTGGTTGCACGCTGGCACCTCCATTGCTGACGTCTAATGGGGCA
ACCGCTGCATCACATCCTTCTGATGGGAAGGATGAATCGGAGTCTCCTCCTTCTCTTATCTCAAATGGGCCGACAGCTGC
GCTGCGTCGGTCTGATGCTAAGGATGAGTCTGA-----------GTCTGCAGGGACCGTGGCACGTAAGGTGAAGAAAGA
AG-------TGAGCAATGATTTGAGAAGTACC----CATGAGGAGCACAAGACCCTGGAAGTATCCCAACCAAAAGGGAA
GGCTTTACATAAAGAAGCGAACGTAAGTTATGATTACTTCAACGTCGAGGAAGTTCTTGACATGATAATTGTGGAGTTGA
GTGCTGATGTAAAAA----TGGAAGCACATGAAGAGTACCAAGATGGTGATGATGGGTTTAGTCTTTTCTCATATTAG--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>chr3A_1_TraesCS3A01G099200
CGAGGCACATACTCTCATGTCTATATTCATGAGATCTCAAACAAGAGCCACGTGTGACGTCTACCGCGGGGTCTCAAATG
GCAACCTCGCGTGTCTATCTGTTGACATCAAGACAACCGCCACCGAGGCTCTTGTCCATCTCCAACGTCATCTTTTCCCG
CCCGCCTCCTCACGACGGGAAGGTC-ATACGTGTCTGTTTGGATTGACGCCCACGTCAACCCCA-CCAAACTCAGGGGCG
CCAATAATTTGACGAGGGAATTTACATCCTCGGTTTCGCCAACACGTGTGGTGTAAAAACAGAACCGACTA-CGGAAAGT
TGGCGGAGGTCCACGTGCACACCGATGCCGAAAATTGGCAGGGCAGCTCGAGACAGCATTCCAAACAAACCCTACATCCA
TCTCTTTAGTGGCAACA---------------------TCACACGAAAAATGTTGAGATTCAGCCTCTCCCGCTCCCTCT
TTCCATCAAAAGGGGAACGGCGGAAACGAAATTTGAAATCGGCGCCCGACGGTGATACG-----ATATCAGCGAATCCAG
AGGGAATCGAGTT------------CGTTTGGAAGGCTGCCTGCAA----GTTACGACTTGCCTTTACTGGCCGTGGTGG
CATACTGGCACGGGAGGAGAGCCACCGCTGTGCTGT---GGAGGCGGCCAGCACAGCA---------------CGGGCAC
CGCCCCAGTTAAAACGGGGGCAGAGAGCGGGTGACGGCCGTGCCACTCGTGTTGACCCACCCCCACCCCACCCCACCCCC
-GCCCCTGCCCCCGCACCCCACGTCAAAACCAAGGCGGCGGCAGCGGGGCGGGAGAGCGGGGAGCACCGACCGACACCGG
CCGACAGGGCGGGCTGCATGCGGAGCTGAGGCGA----------GGCGGGGAGAG-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------ATCCGGCGCGGGTGCCACCGCCGGCCGGCCGCGGGAGATCTGGTTGGTGG
CGCCGCCCGGATAAGGGAGCGGCCGCGGAGGCGGCGAGGGGAGAGCAGCCGAA----------GCGAGAGGAGATCTCTC
TCGTCCCTCTTCTCGCTCCATGGAGACCGGGGGTAGCAAGCGGGAAGGGGACTGCCCCGGGCAGGAAAGGTGAGCGCCGG
AACCACTCCCTCCACCCCCACCTCTATCCC-GCCGCGTTTTCGCTCGAATCTACGGGCATTGCTGAGGCGGCGGCGGCGC
GCCGTCGCCGCGACATGGAATTTGCGCGTGTTTCCGCGGTTGCTCGGTACCGTGAAACATGCCCATCTAAAGTAGCTATC
CGCTGTTCGTTTCCTGTTACCGCGGCGCGTGTCGGACTAGTCGTAGGTCGGCGGTGGTCGCCCTAGGTCGGCGGCCGCCC
TTCAGTTCGGTTCGCCGGGTTTCCGCCGGCTACAGAATTATGGTTTCCTCCGCCTTCTCGGTTGGGGACTGGAGTTCGGC
GAGATTCAGAGCGGCGCGTGGCGAACTGTCGGTGTTAGGTCGGGTGAGGCGGCGCCGTCCTCTGAATCGGATGCAGAAGT
CCCC-----------ATGTCCATGGCGGCGGTCGGGGATTGCCCATGCCATGGCGGTACGATTTTGCTGGTGCATAGCAT
CATAAACTATATCCTCGGGGGCTCGATTGCGGTTGGTACCCAACCCAAGTGATAATAATCTCCTTGAC-TTTTTCCACCA
AGGAAACAAGGATAGCCCTGCTTCGTTCTGTTTTAGATTTATACGACTTTTTTTTA---TGAGAAAGATTTATATGACTG
G--CTGGTTATGTTTTTTGTTTCAAAGTGTTTTCA-CTTGTGATATGGATTGCCTTGATGAACAGGAAGAAGAAAGTGCG
CAGGAGAAGCACCGGTCCTGATTCGGTTGCTGAAACCATCAAGAAGTGGAAGGAGGAAAACCAGAAGCTCCAGCAAGAGA
ATGGATCCCGGAAAGCACCGGCCAAGGGTTCCAAGAAAGGGTGCATGGCAGGGAAAGGAGGTCCAGAGAATTCAAACTGC
GCTTACCGCGGTGTGAGGCAGAGGACGTGGGGGAAATGGGTTGCTGAGATCCGTGAGCCCAACCGTGGCAATCGGCTGTG
GCTTGGTTCATTCCCTACTGCAGTCGAAGCTGCACGTGCATATGATGATGCGGCAAGGGCAATGTATGGCGCCAAAGCAC
GTGTCAACTTCTCAGAGCAGTCCCCGGATGCCAACTCTGGTTGCACGCTGGCACCTCCATTGCTGACGTCTAATGGGGCA
ACCGCTGCATCACATCCTTCTGATGGGAAGGATGAATCGGAGTCTCCTCCTTCTCTTATCTCAAATGGGCCGACAGCTGC
GCTGCGTCGGTCTGATGCTAAGGATGAGTCTGA-----------GTCTGCAGGGACCGTGGCACGTAAGGTGAAGAAAGA
AG-------TGAGCAATGATTTGAGAAGTACC----CATGAGGAGCACAAGACCCTGGAAGTATCCCAACCAAAAGGGAA
GGCTTTACATAAAGAAGCGAACGTAAGTTATGATTACTTCAACGTCGAGGAAGTTCTTGACATGATAATTGTGGAGTTGA
GTGCTGATGTAAAAA----TGGAAGCACATGAAGAGTACCAAGATGGTGATGATGGGTTTAGTCTTTTCTCATATTAGGG
TTTTAGCTAT----GAGGGTTGTAGTCATGCGGAGCAATAGGGATAACTTTCATTCTAGCTGCTAGGAAATACTTCAAAT
TATCTGCAACCCGAAGCTCTGTAGTCACTTATGGTTTTCATCTTACTGGAGAGAATAGCTTTATACCATAAGTCAACGGG
TACAAGAAGTTGTCCTGTGCGTTGAGTTCATGTACTATGGTAAAAGTTG------------------------AGTCCAT
ATTTAATGAGCTTACTCTGTTGATATCTTTTCTTATTTGTTTGGCTGGACTCGAGTTAGCCCTTGAAAATGGCTGGTAGG
AACTCGGGATAGTGCTTAGGGTTGGCATTAAATTGAGGCATATTAGGAAGTCATATTTCTGCAGGTCTTACTATATATTG
AATTGCTGTAGAAAGGTCAGTAAACTGTTAGTACTTAGTAGCATACCACTACTACTGCCATTCAATCATTGTAAGCAGTA
CATAATTGTTATGGAACTTTGCAACGAAAAGTTGCATGCACACTCCATTCAAGCCGCCGTGTCTTACTGTAAGAGGTCCT
TTGTGTGTTAAGCTAGTAGGTTAATCAAATCTAGACTGGGATATCCCAGTCAATAGTCATTCTGAGTGCTTCACGGCAGA
CCTTTCACCAGAAATTGTCTCTGTGCACATCGCGGACAAACATGACGCCATCCTGTTTGGTGAATGGACGGTACACATTT
GGGTACCTGTCATGGAATCTGCAGGAAGCAGCAAAAGCTTGGAAGGCTATAGCAGCACTGCAACAGCCGCTACACAGCAG
TCAGTGCCCTTGTCCTCTAGGACCATTTAAAAACAATGGTAAGGACTAACTTTTTTCTTGTCGATCGTTGCAGGTGCAGC
CACACAGACTTACTGATTTGTGCCCACAAAACAGACTGGCTGAAAGCAGCCTTGCAGTGGAAGACAGAGGTCAATCCATT
GGCCATACAAGGTGCTTTATTTGTCACTGTGTTGCTGTTTATTTGATATTGAACATGCACTTGGAA
>chr3B_1
CGAGGCACATACTCTCGTGTCTATAT-CACGAGATCTCGAACAAGAGCCACGTGTGACGTCTACCGTGGGGTCTCAAACG
GCAACCCCGCGTGTCTATCTGTTGACATCAAGACAACTGCCAGCGATGCTCTTGTCCATTTTCAACGTCACCTTTTCCCG
CCCGCCTTCCCTCGGCGGGAAGAAAGATACGTGTCTATTTGGATCGGCGCCCACGCCAACCCCA-C-AAACTCGGGCGCG
CCAATAATTTGACGAAGGAATTTACATCATCGGTTTCACCGACACACGTGGCGTAAAAGCTGAACCAACTACTGAAAAGT
CGGCGGAGGTCCACGTG--CACCGATGCCGAAAATTGATAGGGCAGCTCCAGACAGCATTCCAAACAAACCCTACA----
------TAGTGGCAACA---------------------TCACACGAAAAATGTTGAGAT-CAGCCTCTCCCGCTCCCTCT
TTTCATCAAAAGGAAAACGGCGGAAACGAAATTTGAAATCGGCGCCCGACGGTGATACTCCTATATCGCAGCGAATCCAG
GGGGGATCGAGTCGGCGTGTCCGTCCGTTTGGAAGGCTGCCTGCAAGCAGGTTACGACTTGCCTTTACTGGCCGTGGTGG
CATACTGGCACGGGAGGAGAGCCACCGCTGTGCTGT---AGAGGCGGCCAGCGCAGCA---------------CAGGCAC
CGCCCCAGTTAAAACGCGGGGAGAGAGCGGGTGACGGCCGTGCCACTCGTGTTGACCCACC-CCACCCCACCCCACCCCC
CGCCCCTGCCCCCGCACCCCACGTCAAAACCAAGGCGGCGGCAGCGGGGTGGGAGAGCGGGGAGCACCGACCGACACCGG
CCGACAGCGCGGGCTGCATGCGGAGCTGAGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCCGGCGCGGGTGCCACCGCCGGCCGGCCACGGGAGATCTGGTTGGTGG
CGCCGCCGGGATAAGGGAGAGGCCGCGGAGGCGGCGAGGGGAGAGCAGCCGAA----------GCGAGAGGAGATCTCTC
TCGTCCCTCTTCTCGCTCGATGGAGACCGGGGGTAGCAAGCGGGAAGGAGACTGCCCCGGGCAGGAAAGGTGAGCGTCGG
AACCACCCTCTCCACCTCCACCTCTATCCCCGCCGCGTTT-CTCTCGAATCTATGGGCATTGCTGAGGCGGCGGCGGCGC
GCCGTCGCCGCGACATGGAATTTGCGCGTGCTTCCGCGGTTGGTCGGTACTGTGAAACATGCCCATCTAAAGCAGCTATC
CGCTGCTCGTTTCCTGTTACCGCGGCGCGTGTCGGACTAGTCGTAGGTCGGCGGTGGTCGCCCTAGGTCGGCGGCTGCCC
TTCAGTTCGGTTCACCGGGTTTCCGCCGGCTATAGAATTATGGTTTCCTCCGCCTTCTCGGTCGGGGATTGGAGTTCGCC
GAGATTTAGAGCGGTGCGTGGCGAACTGTCGGTGTTAGGTCGGGTGAGGCGGCGCCGTCCTCTGAATTGGATGCAGAAGT
TCCCCATGCGGCGCCATGCCCATGGCGGTGGTCCGGGGTTGCCCATGCCATGGCGGTACGATT--GCTGGTGCACAGCAT
CATAAAAATATATCTTCGGGGCTCGATTGCGGTTGGTACCCAACCCGAGTGATAATAATCTCCTTGACTTTTTTCCACCA
AGGAAACAAGGATAGCCCTGCTTTGGTTTGTTTTAGATTTATACGACTTTTTTTT-CTCTGAGAAAGATTTATATGACTC
TGACTGCTTATGTTTTTTGTTTCAACGTGGTTTCACCTTGTGATATGGATTGCCTTGATGACCAGGAAGAAGAAAGTGCG
CAGGAGAAGCACTGGTCCTGATTCGGTTGCTGAAACCATCAAGAAGTGGAAGGAGGAAAACCAGAAGCTCCTGCAAGAGA
ATGGATCCCGGAAAGCACCGGCCAAGGGTTCCAAGAAAGGGTGCATGGCAGGGAAAGGAGGTCCAGAGAATTCAAACTGC
GCTTACCGCGGTGTGAGGCAGAGGACGTGGGGCAAATGGGTTGCTGAGATCCGTGAGCCCAACCGTGGCAACCGGCTGTG
GCTTGGTTCATTCCCTACCGCAGTCGAAGCTGCACGTGCATATGATGATGCGGCAAGGGCAATGTATGGCGCCAAAGCAC
GTGTCAACTTCTCAGAGCAGTCCCCAGATGCCAGCTCTGGTTGCACGCTGGCACCTCCATTGCTGATGTCTAATGGGGCA
ACTGCCGCATCACATCCTTCTGATGGG-----------------------------------------------------
-------------------AAGGATGAGTCTGA-----------GTCTGCAGGGACCGTGGCACATAAGGTGAAAAAAGA
AG-------TGAGCAATGATTTGAGAAGTACC----CATGAGGAGCACAAGACCCTGGAAGTATCCCAACCAAAAGGGAA
GGCTTTACATAAAGAAGCGAATGTAAGTTATGATTACTTCAACGTCGAGGAAGTTCTTGACATGATAATTGTGGAATTGA
GTGCTGATGTAAAAA----TGGAAGCACATGAAGAGTACCAAGATGGTGATGATGGGTTTAGTCTTTTCTCATATTAGGG
TTTTAGCTAT----GAGGGTTGTAGTCATGCGGAGCAATAGGGATAACTTTCATTCTAGCTGCTAGGAAATACTTCAAAT
TATCTGCAACCCGAAGCTTTGTAGTCACTTATGGTTTTCATCTTACTGGAGAGAATAGCTTTATACCATAAGTCAACGGG
TACAAGAAGTTGTCCTGTGCGTTGAGTTCATGTACTATGGTAAAAGTTG------------------------AGTCCAT
ATTTAATGAGCTTACTCTGTTGATATCTTGTCTTATTTGTTTGGCTGAACTCGAGTTAGCTCTTGAAAATGGCTGGTAGG
AACTCGGGATAGCGCTTAGGGTTGGCATTAAATTGAGGCATATTAGGAAGTCATATTTCTGCAGGTGTTACTATATATTG
AATTACTGTAGAAAGTTCAGTAAACTGTTAGTAGTTAGTAGCATTCCACTACTACTGCCATTCAATCATTGGAAGTAGTA
CATAATTGTTATGGAACTTTGCAACGAAAAGTTGCATGCACGCTGCATTCAAGCCGTCGTGTCTTACTGTAAGAGGTCCT
TTGTGTGTTAAGCCAGTAGGTTAATCAAATCTCGACTGGGATATC-CAGTCCATAGTCATTCTGAGTGCTTCACGGCAGA
CCTTTCATCAGAAATTGTCTCTGTGCACATCGCGGACAAACATGACGCCATCCTGTTTGGTGAATGGACGGTACACATTT
GAGTACCTGTCATGGAATCTGCAGGAAGCAGCCAAAGCTTGGAAGGCTATAGCGGCACTGCAGCAGCCGCTACACAGCAG
TCAGTGCCCTTGTCCTCTAGGACCATTTAAAAACAATGGTAAAGACTAACTTCTTTCTTGTCGATCGTTGCAGGTGCAGC
CACACAAACTTACTGATCTGTGCCCACAAAACAGAGTGGCTGAAAGCAGCCTCGCAGTGGAAGACAGAGGTCAATCCACT
GGCCATACAAGGTGCTTTATTCGTCACTGTGTTGCTGTTTATTTGATATTGACCATGCACTTGAAA
>chr3D_2
-GAGGCACATACTCTCATGTCTACAC-CATGGGATCTCGAACAAGAGCCACATGTGACGTCTACCATGGGGTCTCAAAGG
GCAACCCCGCGTGTCTATCTGTTGACATCAAGACAACTGCCACCAATGCTCTTGTCCATTTGTAACGTCACCTTTTCCCG
CCCGTCTCCTCACGGCGGGAAGGTC-ATACGTGTCTGTTTGGATTGACGCCCACGCCACCCCTCTC-AAACTCGGGGGCG
CCAAAAGTTTGACGAGGAAATTTACATCATCGGTTTCGCCAGCACGCGTGGCGTAAAAACTGAACCGACTACCGAAAAGC
CGGCGGAGGTCCATGTG--CACCGATGCAAAAAATTGGCAGGGCAGCTCGAGGCAGCATTCTAAACGAACCCTACACCTA
TTTGGCAAGGCGGAGACGAAAATTGAAATCGGCAACACTCACACGAAAATTGTTGAGTT-CGGCCTCTCCCGCTCCCTCT
TT-----------GGAAAGGCGGAAACGAAATTTGAAATCGGCGCTCGACGGTGATACG-----ATCTCAGCGAATCCAG
AGGGAATCGAGTCGGCGTGTCTGTCCGTTTGGAAGGCTGCCTGCAA----GTTACGACTTGCCTTTACTGGCCGTGGTGG
CATAGTGGCACGGGAGGAGAGCCACCGCTGTGCTGGAGGAGAGGCGGCCAGCACAGCACCGCACAGCGCAGCGCAGGCAC
CGCCCCAGTTAAAACGGGGGGAGAGAGCGGGTGACGGCCGTGCCACTCGTGTTGACCCACC-CCACCCCACCCC------
------------CGCCCCCCACGTCAAAACCAAGGCGGCGGCAGCGGGGCGGGAGAGCGGGGAGCACCGACCGACACCGG
CCGACAGGGTGGGCTGCATGCGGAGCTGAGGCGAGGCGAGGCGAGGCGGGGAGAG-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------ATCCGGCGCGGGTGCCACCGCCGGCCGGCCGCGGGAGATCTGGTTGGTGG
CGCCGCCCGGATAAGGGAG---------AGGCGGCGAGGGGAGAGCAGCCGGGGGAGACCGAGGCGAGAGGAGATCTCTC
TCGTCCCTCTTCTCGCTCCATGGAGACCGGGGGTAGCAAGCGGGAAGGAGACTGCCCCGGGCAGGAAAGGTGAGCGCCGG
AACCACTCCCTCCATCTCTACTTGTAT-CCCGCCGCGTTT-CGCTCGAATCTACGGGCATTGCTGAGGCGGCGGCGGCGC
GCCGTCGCCGCGACATGGAATTTGCGCGTGTTTCCGCGGTTGGTCGGTGCTGTGAAACATGCCCATCTAAAGCAGTTATC
CGCTACTCGTTTCCTGTTACCGCGGCGCGTGTCGGACTAGTCGTAGGTCGGCGGTGGTCGCCCTAGGTCGATGGCTGTCC
TCCAGTTCGGTTCGCCGGGTTTCCGCCGGCTGTAGAATTATGGTTTCCTCCGTCTTCTCGGTTGGGGATTGGAGTTCGGC
GAGATTCAGAGCGGTGCGTGGCGAACTGTCGGTGTTGGGTCGGGTGAGGCGGCGCCGTCCTCTGAATCGGATGCAGAAGT
CCCC-----------ATGTCCATGGCGGCGGTCGGGGATTGCCCATGCCATGGCGGTACGATT--GCTGGTGCACAGCAT
CATAAACTATATCTTCGGGAGCTCGATTGCGGTTGGTACCCAACCCAAGTGATAATAATCTCCTTGACTTTTTTCCACCA
AGGAAACAAGGATAGCCCTGCTTCGTTTTGTTTTAGATTTATACGACTTTTTTTTTCTGTGAGAAAGATTCATATGACTC
TGACTGCTTATGTTTTTGGTTTCAACGTGTTTTCACCTTGTGATATGGATTGCCTTGATGAACAGGAAGAAGAAAGTGCG
CAGGAGAAGCACTGGTCCTGATTCGGTTGCTGAAACCATCAAGAAGTGGAAGGAGGAAAACCAGAAGCTCCAGCAAGAGA
ATGGATCCCGGAAAGCACCGGCCAAGGGTTCCAAGAAAGGGTGCATGGCAGGGAAAGGAGGTCCAGAGAATTCAAACTGC
GCTTACCGCGGTGTGAGGCAGAGGACGTGGGGGAAATGGGTTGCTGAGATCCGTGAGCCCAACCGTGGCAATCGGCTGTG
GCTTGGTTCATTCCCTACCGCAGTCGAAGCTGCACGTGCATATGATGATGCGGCAAGGGCAATGTATGGCGCCAAAGCAC
GTGTCAACTTCTCAGAGCAGTCCCCGGATGCCAACTCTGGTTGCACGCTGGCACCTCCATTGCCGATGTCTAATGGGGCA
ACCGCTGCGTCACATCCTTCTGATGGGAAGGATGAATCGGAGTCTCCTCCTTCTCTTATCTCAAATGCGCCGACAGCTGC
GCTGCATCGGTCTGATGCTAAGGATGAGTCTGA-----------GTCTGCAGGGACCGTGGCACGTAAGGTGAAAAAAGA
AG-------TGAGCAATGATTTGAGAAGTACC----CATGAGGAGCACAAGACCCTGGAAGTATCCCAACCAAAAGGGAA
GGCTTTACATAAAGCAGCGAACGTAAGTTATGATTACTTCAACGTCGAGGAAGTTCTTGACATGATAATTGTGGAATTGA
GTGCTGATGTAAAAA----TGGAAGCACATGAAGAGTACCAAGATGGTGATGATGGGTTTAGTCTTTTCTCATATTAGGG
TTTTAGCTAT----GAGGGTTGCAGTCATGCGGAGCAATAGGGATAACTTTCATTCTAGCTGCTAGGAAATACTTCAAAT
---CTGCAACCCGAAGCTTTGTAGTCACTTATGGTTTTCATCTTACTGGAGAGAATAGCTTTATACCATAAGTCAACGGG
TACAAGAAGTTGTCCTGTGCGTTGAGTTCATGTACTATGGTAAAAGTTG------------------------AGTCCAT
ATTTAATGAGCTTACTCTGTTGATATCTTTTCTTATTTGTTTGGCTGAACTCGAGTTAGCCCTTGAAAATGGCTGGTAGG
AACTCGGGATAGCGCTTAGGGTTGGCATTAAATTGAGGCATATTAGGAAGTCATATTTCTGCAGGTCTTACTATATATTG
AATTGCTGTAGAAAGGTCAGTAAACTGTTAGTACTTAGTAGCATACCACTACTACTGCTATTCAATCATTGTAAGCAGTA
CAAAATTGTTACGGAACTTTGCAACGAAAAGTTGCATGCACACTCCATTCAAGCCGTCGCGTCTTACTGTAAGAGGTCCT
TTGTGTGTTAAGCCAGTAGGTTAATCAAATCTAGACTGGGATATCCCAGTCAATAGTCATTCTGAGTGCTTCACGGCAGA
CCTTTCATCAGAAATTGTCTCTGTGCACATTGCGGACAAACATGACGCCATCCTGTTTGGTGAATGGACGGTACACATTT
GAGTACCTGTCATGGAATCTGCAGGAAGCAGCAAAAGCTTGGAAGGCTATAGCAGCACTGCAACAGCCGCTACACAGCAG
TCAGTGCCCTTGTCCTCTAGGACCATTTAAAAACAATGGTAAGGACTAACTTTTTTCTTGTCGATCGTTGCAGGTGCAGC
CACACAGACTTACTGATTTGTGCCCACAAAACAGACTGGCTGAAAGCAGCCTTGCAGTGGAAGACAGAGGTCAATCCACT
GGCCATTCAAGGTGCTTTATTTGTCACTGTGTTGCTGTTTATTTGATATTGAACATGCACTTGGAA
>chr5B_1466
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------TGTTCATGGCGGTGGTTGGCAATTGCTTATGCCATAGCGGAACAATT--GCTGGTGCATAGCAT
CAGAAACCATCACTTTGGGA-CTTGATTGCAGTTGGTATCCAACCCAAGTGATAATCTCCATT-----TTTTTTCCACCA
AGGAAACAAGAATAGCCCTGCTTCGGTTTGTTTTAGATTTATATAGGACTCGTTTT-TGCGAGAAAGATTTATATGACTC
TGATAGGTTATGTTTTTTGTGTCAATGCTTAG---CCTTGTGACATGAATTGCCTTGATGACCAGGAAGAAGAAAGTACG
CGGGAGAAGCACTGGTCCCGGTTCTGTTGCTGAAATCATCAAGAAGTGGAAGGAGCAAAACCAGAAGCTCCAGCAAGACA
ATAGATCCCTGAAAGCGCCGGCCAAGGGTTCCGAGAAAGGGTGCATGGCAGGGAAAGCAGGTCCGGAAAATTCAAACTGC
GCTTACCGCGGTGTGAGACAGCGGACGTGGGGCAAATGGGTGGCTGAAATCCACGAGCCCAACCGTGGCCAACGGCTATG
GCTTGGTTCATTCCCTACTGCAGTGGAAGCCGCGCGCGCATATGATGATGCAGCAAGGGCAATGTATGGCGCCACAGCAC
GTGTCAACTTCTCAGAGCACTCCCCAGATGCCAACTCTGGTTGCACGTCGGCACCTTCGTTGCAGATGTCTAATGAGGCC
ACCACTGCGTCACATCCGTCTGATGAGAAGGATGAATCGGAATCTCCTCA---TCTTATCTCAAATGCGCCGACAGCTGT
GCTGCATCAGTCTGATGCGAAGGATGAGTCTGATACCATCTTACGTCTGTAGGGACTGTGGTGCATAAGGTGAAAACAGA
AGTAAGAAATGAGAAATGATTTGAGAAGTATGTACTCATGAGGAGGCACTGGAAGAGTTT-----CCAACCAAAAGGGGA
GGCTTTACATAAATAAGTGAAGGTATGTTACAGTTACTTCAACGTCGA-GAAGTTCTTGACATGATAATTGCGGAACTAA
GTGCTGATCGAAGAATGAGTGCAAGTACATGAAGAGTACCAAGATGGCGCTGATGGGTTTAGTCTTTTCTCGTATTAGAG
TTTTAGCTACGTACGAGGGTTGTAGTCATGCTGAGCAATAGGGATAACTA-CACTCTAGCTGCCAGGAAATACAACCTG-
-------AAACCGAAGCTTTGTAGAA-------------------------AGAATAGCTTTATACCATACGTCAACGGG
TACAAGAAGTTGTCCTGTGTGTTCAGTTCATGTACTATGGTAGAAATTGAGTCCTTTTTTTTTTTGAAACCGAAGTCCTT
ATTCAATGAGCTTACTCTGTTGATATTTTTTATTATTTGTTTGGTTGAACTCAAGTTAGCTCTTTAAAATGGCTGGTAGA
AACTCGGGATAGTGCTTAGGGTTG-CACTAACTTCAGGCATATTAGG------TATTTCTGCAGGTGTTACTGTATATTG
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>SNPs
--------------------------S-----------S---------------------------S-----------S-
------S------------------------------S--------S------------S-S--------S---------
--------------S----------------------------------------S----------S------S------
----------------------------S-----------------S----S--------S-------------S-----
S----------------SS---------------------------------------------------------S-S-
-S-SSS-----------------------------------------------------S--------------------
--S---------------------------------------------------------------S-------------
------------S-------------------------------------------------------------------
---------------------------------------S----------------------------------S-----
--------------------S----------------------------------------S------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------S------------------------------------------------------------
------------------------------------------------S-------------------------------
----------------S-----------------------S---------------------------------------
------------------------------------------S-------S---------------------S-------
-----S---------------------------------------------------------------------S----
--------------------------------S-----------------------------------S-----------
--------------S-----------------------------------------------------------------
---------------------------------------------------------------SS---------------
--------------------------------------------------------------------------------
---------------------------S---------------------------S-----------------------S
S------------------------S------------------------------------------------------
------------S-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------S-------------
-------------------------------------------------------------------S------------
-----S--------------------------------------------------------------------S-----
--------------------------------------------------------------------------------
---------------------------------------------------------------------------S----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------S-------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------S--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------S-----------------------
-------------S------------------------------------------------------------------
-------S------------------------------------------------------------------------
-S------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------S-
------------------------------------------------------------------
>forward_142
--------------------------------------------------------------------------------
------------------------------------------CCGAGGCTCTTGTCCATCTC------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>reverse_1669
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------CTGGAGTTCGGC
GAGATTCA------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>forward_234
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------CGTCAACCCCACCAAACTCA------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>reverse_2093
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------CGGTCCTGATTCGGTTGCT-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>forward_1948
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------AGGATAGCCCTGCTTCGTTC----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>reverse_3839
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------TT
GGCCATACAAGGTGCTTT------------------------------------------------
