>input_sequence_48954
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------------------------------------------------------------------------------CG
CCCT------GCCGCCGCCGCGGCCACGACCGGATCTCGTCCTCCTCCTGGCCCAGCAGAGGGCGATGGCGGCGAGGGCG
CTTGGGCTCGCCGGCCGAGCGCTCCTACGGCCGCTCTCCTCGCCGGGCGCCCAGCGGCTGCTGTCCACTGACAAGGTACG
TTCACCAGCTCCCCATCCCTCCC----TTCCATTGCATTTCCCGGCAAGAAACTCGATCCAGATCCATCTAACTGGCAGT
ACGATGGTAACTAGGTAGACTGAATC-------GAATCTTGAACTGAAACAGAGAGGTATGATAGATTCGTCAGCTGGGC
AAGTGTGCGCATGCTTCCTACCAATTCAACTGCGATGTAATTTCATTTCATGGGGAATGGATAGAAGAAGAAAACGGAGG
TGTTC---------------------------TACTG-------------------------------------------
-------------------CTGTTCTAAGGGTGCCGG-CCCCTTTGCCATTGCCAACTAACCTACCAAATTAACTAAGTC
CAGTGCTGCTGATGCTGTTGACCACAAAT-CTTGCTACTATGGCCATGA-ATCTTATTGTGTGATCTTAATTCTTACAGC
CGCATTGCTATATACTCCTGC------------------TTTTTTA-CCCAGTTTTGCTTAGACATGAACAGAGCGGTCC
ATCTTG-TTATCTGGTGCTTGATACGATTTGAATCTCAATTTGTGCTTTTGCAGGGCCCACTGCAGGAGCTCGCGAACGC
CGGTGATCCGATGAGCCGCCTCATCATGCAAGCACGGAACCAGACTGACGGCGGTTTTCCCCGTCACTTTGCTGAGAACG
GATTCACAGCAGGTGGTGGCAGGATGGGTGGAAATGGATTCACAGCCAGCGATGGCAGGATGGGTGGAAACGGATTCACA
GCCAGTGATGGCAGGATGGGTGGAAACGGATTCACAGTCGGTGATGGCAGGATGGGCAGAATTGGATTCACAGCCGGTGA
TAGCAGGATGGGTGGAATTGGATTCACACCCGGTGGTGCCAGGATGGGTGGAAACGGATTCACAGCCGGTGGTGGCAGGT
CGGGCCGGTTTAACATGGAAATGCTGCGGCCAGCAGGGGCACCGCGAGTAAAGAGGGACGTTCTCCATGTCACGCTCAAG
GGGAAGAAGACCTTTGTGACCGTGACGGACGTCAAGGGGAACAGGAAGGCTGGGGCTTCCGCTGGCTGTTTGGAGGATCG
AAAGGGGCGGTCTCGTCTTGCTCGGTATGCTGGTGAAGCAACAGGGGAACACATGGGGCGAGTTGCCAGCAAGATTGGCC
TCAAGTCTGTCATTGTGAAGGTGAAAGGATACTCCTTTTTCAGGAAGAAGAAGAAGGTGATCATGGGCTTTGCAGACGGT
TTCCGGGGTGAAAGAGTGAGAACCCCGTCTCCTATCATGCACGTCCATGATGTGACGCAGCTCGCGCATAATGGATGCCG
GCTGCCCAAAAAGGTAAGGAAGTAAGACTGATAATAGCCCCCAGCAAGAAGTGTGGAGATCAATATCCTGTC-CCAAGGA
GAAACAAATTAAGAACGATATGTATGTATCGACAGGTTCTGTAATAATGTCATGAGCCTGGA------------------
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------
>chr2D_1_TraesCS2D01G586100
TTTTTAAAAATTGTTCGAAGTTTTTCAAAAATCATGTTTTTAGTTATTATATTTCAGAACTTAACTTTTTTCAAAAAATG
TTTCAAAATTACAAAAAATGTTTAGAATTTCATTTTTTCTATTCATGCTTTTAAAAAGTTCGAAATTTCAATTTTTGTTT
ACTTATTCCAAAAAA-GTTTAGTATTTCAAATTTTGTTTTCTTTTCCAGAATTTTTTTTT--AATTTTTAGGAAATGTTT
GAAAAAGTTCATAAATGTTTGATCTGCCTCTCGTGTCAGTTCATAAAGTCTCCGCACTACAGAAAATCATGAATGCTCAC
CAGCTTCAGTGGCTAGCAACAAGCAGTCTAGGACGAGCCGTCAGGAGTTCGAACCCATGAGAGTGAACCGCTATTTTAGG
A--TTTTTACGCTGCCCCGATTTGATTATAGTGCCATTCGCTTGGGTGCCTACCAATGGGCCAACCCAGTTGGGCTTCCG
TATGCGTCGTGTCGTTGTTTTGACGCAAAATGTGTCGTATAGGAGGTCCCCTCGGGGCGTGTACGGCTGCTCGCAAGCCC
CATGCAAGCTCTTGGGAGCAAATTTGGCCCGTTTGGTTAGCTGGGTTGCATTGTCAAAGTGGGCCACACAAACTTTGAAG
CACATCTCAGGCTAGCGCTCGAGGAACGCCTGAGTCGATTGTTTCCGGGGAGCCAGACTCACTACATGCAGGGAGAGAAA
ACACGGCGACAGGGCTTGTGCAAGCGCGGGGATGGCACCAACACGCGTGCGTCCCCA-GAAAAAATGGCGGGAGTA----
--TCACCTCTGGTTCATTCCGTC-----ACCCTATTTAACCCCCTTCGGCTCACCTTTTTG-------------------
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------------------------------GAAGTAAAAAAAAGTCAGAAAATTTGAATTTTTTTTTTTT----------
------------------------------------------AGACAAGTCAGAAAATTTGATGTGGGCACTAAACGGTA
GGCAGGTCCAGTTAAAGCCCAAGAAGGAAAGACGGCCTAAGCCATACGAGAGACGCACTCGAATCTTCGCAACAGCCTCG
CCCT------GCCGCCGCCGCGGCCACGACCGGATCTCGTCCTCCTCCTGGCCCAGCAGAGGGCGATGGCGGCGAGGGCG
CTTGGGCTCGCCGGCCGAGCGCTCCTACGGCCGCTCTCCTCGCCGGGCGCCCAGCGGCTGCTGTCCACTGACAAGGTACG
TTCACCAGCTCCCCATCCCTCCC----TTCCATTGCATTTCCCGGCAAGAAACTCGATCCAGATCCATCTAACTGGCAGT
ACGATGGTAACTAGGTAGACTGAATC-------GAATCTTGAACTGAAACAGAGAGGTATGATAGATTCGTCAGCTGGGC
AAGTGTGCGCATGCTTCCTACCAATTCAACTGCGATGTAATTTCATTTCATGGGGAATGGATAGAAGAAGAAAACGGAGG
TGTTC---------------------------TACTG-------------------------------------------
-------------------CTGTTCTAAGGGTGCCGG-CCCCTTTGCCATTGCCAACTAACCTACCAAATTAACTAAGTC
CAGTGCTGCTGATGCTGTTGACCACAAAT-CTTGCTACTATGGCCATGA-ATCTTATTGTGTGATCTTAATTCTTACAGC
CGCATTGCTATATACTCCTGC------------------TTTTTTA-CCCAGTTTTGCTTAGACATGAACAGAGCGGTCC
ATCTTG-TTATCTGGTGCTTGATACGATTTGAATCTCAATTTGTGCTTTTGCAGGGCCCACTGCAGGAGCTCGCGAACGC
CGGTGATCCGATGAGCCGCCTCATCATGCAAGCACGGAACCAGACTGACGGCGGTTTTCCCCGTCACTTTGCTGAGAACG
GATTCACAGCAGGTGGTGGCAGGATGGGTGGAAATGGATTCACAGCCAGCGATGGCAGGATGGGTGGAAACGGATTCACA
GCCAGTGATGGCAGGATGGGTGGAAACGGATTCACAGTCGGTGATGGCAGGATGGGCAGAATTGGATTCACAGCCGGTGA
TAGCAGGATGGGTGGAATTGGATTCACACCCGGTGGTGCCAGGATGGGTGGAAACGGATTCACAGCCGGTGGTGGCAGGT
CGGGCCGGTTTAACATGGAAATGCTGCGGCCAGCAGGGGCACCGCGAGTAAAGAGGGACGTTCTCCATGTCACGCTCAAG
GGGAAGAAGACCTTTGTGACCGTGACGGACGTCAAGGGGAACAGGAAGGCTGGGGCTTCCGCTGGCTGTTTGGAGGATCG
AAAGGGGCGGTCTCGTCTTGCTCGGTATGCTGGTGAAGCAACAGGGGAACACATGGGGCGAGTTGCCAGCAAGATTGGCC
TCAAGTCTGTCATTGTGAAGGTGAAAGGATACTCCTTTTTCAGGAAGAAGAAGAAGGTGATCATGGGCTTTGCAGACGGT
TTCCGGGGTGAAAGAGTGAGAACCCCGTCTCCTATCATGCACGTCCATGATGTGACGCAGCTCGCGCATAATGGATGCCG
GCTGCCCAAAAAGGTAAGGAAGTAAGACTGATAATAGCCCCCAGCAAGAAGTGTGGAGATCAATATCCTGTC-CCAAGGA
GAAACAAATTAAGAACGATATGTATGTATCGACAGGTTCTGTAATAATGTCATGAGCCTGGAAGTATTTATGAATACTTA
TTAGACAGTCTTAGAT--TGGCTCTTGTAAGACAAACAT-TTTTGTCATTTCCTGTAATGTTGCTGAAGTGATGGATTTG
TT---------CATGGTTGCATTGCACGCAGTTCCCTCTCCTTTTGTGGAGCTCCTATATAGTTACAGCACTGCAAGTGT
ATGTGTTGAGAAGCTGCTAATTTCTTGTTTTTCAAGAAGTGAAAAAGTTTGAAGTGGCAAGTAATTTGGAAGGGTTGCAT
CCCTCTTGCACATTAAGATAATGTTCTGCTTTAATGGTTGGCTCTGTCCCCTCATTTTCCTTTTTTTAACCGACAAGAAA
ATATTCTGAGACTCTTATAAAATT-AAACTTCGTCTGCGATTCTTTC------A--AGCAAGAAAAAATTTGAACTCTTT
ATAGGCCAAAATATGCAGAACTCCCTTCAT---ATTCCCTCTTCTCCTCTCACTAAAATTTCTCTGCTGA----------
--------------GATCCCTTTTGCAGTTAATTAGAAGGGT-GAATTAGTGGGTGATTATTTAGAACTTAACTACTAGA
ATCTCTATGTAGTTAGAAGGAGCGACTTCTCTG--ATTTTCTTGGTTCGGA--------GAAGAATGTAGTATTGTGAAG
GAACTGGGGG---------------AAGATTAGTTGCAGCAAGGAAAACACTG----------AATCTTGACAGCATCAT
ACACAGACCATGCATGAGATGAGAT-------------------------------------------------------
----GAATGATTCCATGATTTTATTACTGACAGTGTAGCACATTATATCAGTTACTCTAGAATTGCTAACAACTGCTTAT
GTTCATAATAGCAAAGCCACACACAAAAACTTAGACCGAAAGCATAGTTAACCCAGACTACAACC-AAAATGCAGACAAC
ACTGAATTTTGGTGCACACACTACTGCATCCAGTCATTCGGCTTGTACATGAATGCTTCCCTTCTGAGTATTATTATAAA
TCTTCATAAAGCTCCCGATCGATCCTTTTTCCACCACGCCCATATCCATCAATCGTTGGCATATATAAATAGTATCTCCA
GCCCCA
>chr2A_10
---------ATTTTTTGAAGTTTTAAAAAAATCATGTTTTTAGTTATTATATTTCAGAATTTCACTTTTT-CAAAAAATG
ATTAAAAAATACATGAATTGTTTGGAATTTCTTTTTT----TTCATGCTTTCAGAAAGTTCAAAACTTCAATTTTTGTTT
AATTTTTCCAAAACTTGTTCAGAATTTCAAATTTTGTTTTCTTTTCCAGAAAATAAAATTTCAATCTTTAGGAAATATTC
GAAAAAGTTCATAAATGTTTGACCCGCCTCTCTTGTCAGTTCATAAAGTCTCCGCACTACAAACAGTCATGAATGCTCAC
CAGCTTTAGTGGCTAGCAACAAGCAGTCTGAGATGAGCGATCGTGAGTTCGAACCCATGAGAATGCACTGCTATTTTAGA
ATTTTTTTACGCTGCACCGATTAGATTATAGTGCCATTCGCTACG------------------ACCCAGTTGGGCTTCTG
TATGCGCCGTGCCGCTCTTTTGACGCAAAATGTGTCGTATAGGAGGTCCCCTTGGGGCGTGTATGGTTGCTCGTAAGCCC
CGTGCTGGCTCTTGGGAGCAAATTTGGCCAGTTTGGTTAGTTGGGTTACATCATCAAAGTGGGCCACACAAACTTTGACG
CACATCTCAGGCTAGCGCTCAAGGAACGCCTGAGTCGATTGTTTTCAGGGAGCCAGACTCACTACATGCAGGGAGAGAAA
ACATG------------------GCGCGGGGATGGCACGAACACGCATGCGTCCCTCGGAAAAAATGGCTGGAGTAACTT
TGTCACCTCCGGTTGATTCCCGCCTGTTACCCTATTTAACCCCCTTCGGCTCACCACCCCAACCCCCCTCCCCATCCTCA
AGCTCTTTGTCCCGAGAAGCTTGTTCACCGATGAGCAGGCCGGTGGTGTTATCTTCTACGTCCATCGATGGTCGACGACG
TCGATACTTCTTCCTCCTATTCTCCGACTTGTTTCCTTCCCCCTCCCCGCTCCCCCGATGGCTTTAAGTAGCATTACACC
CTAGTTTTTGTAGCTTATATATGTGATCATTTGGTAGATTAGAGTAGATCTAAAGGTAGTATGACATGTTATGCAAGTAC
TGCTTCATGATGTTGGGTCAGGATGTGGTAGATCATATGCTAGTGGTGTTGTGTTGGTACTTGGTAGTATGGTAGATTTT
GCTTGATTGCAGTGATGATGTTCATGGTGTTGTGGTAGATCGATGCTTATGTGCTAGTATTACATGTGTTTCCATGTCGG
TTTTCACGCTAGTATTGTAGATGTGGTAGTGTGTTGAGCTTTATGATCAGTCCATGTGTAGTACAGTAAGTCATAGTGCG
TTGAGCTTCATTATCAGTCCATGTCAATATGGTAGACGTGGTAGTGTGATGAGCTTCATGGTTAGTCCATTCTAGTATGC
TAGTATGTTAGATGCATTGTTCTTGTTCAGCTAGTCCCGATGCTAACCATTGTAGGCAATCAATGGCGAAGAGTGTAAGT
ACAAAATAAATGGAGTTTGCCCTAAAAAATAAAAGAAATGTAAAACTAATCAGACGTCGAATTTATTAGCTCTTTTGACG
TGGATTTTTTTGGTGTATTTTACTTACGTCCTTCAAATGGGAATACAAATAAAGATCTTACGATTCGTAAATGTTCATAT
GAAAAAGAAGAGAGAACATCAGAACAAGCAATATAATAATAAAAATAAATTCATCTGTCACAATAGTTACAATTACATGG
CTATCCTTGGCCAATGGTCAACCCGCACAACACTGATAGCTAGAAAAAAATTAAAAGTTCAGACATGTTTTTTTAGGAAT
AAAAATAATAAGCCAGAACATGTTTTTTCAGAAGTAAAAAAAAATCAGAACATTTGCTATTTGGTTTTTGAGAATATAGT
CAGAAAATTCGATTTTTTTTGGGAAACAAGTATTTGTTTTTGAGACAAGTAAGAACATTTGATGTGGGCACTAAACGGTA
GGCAGGTCCAGTTAAAGCCCAAGAAGGAAAGACGGCCTAAATCACACGACCAGAAAATTCAATCGAGGGTTTCTCGT---
------------CGCCGCCGCGGCCACGACCGGATCTCGTCCTCCTCCCGGC-CAGCAGACGGCGATGGCGGCGAGGGCG
CTTGGGCTCGCCGGCCGAGCGCTCCTGCGGCCGCTCTCCTCACCGGGCGCCCAGCGGCTGCTATCCACTGACAAGGTACG
TTCGCCAGCTCCCCATCCCTCCCTTCCTTCCATTGCATTTCCCCGCAAGAAACTCGATCCAGATCCATCTAACTCGCAAT
ACGATGGTAGCGAGGTAGGTAGGCAGGTGAAGTGAATCTTGAAATGAAACAGAGAGATAGGATAGATTCGTGAGCTAGGC
AAATGCGCGCGTGCTTCCTACCAATTCAACTGCGATGTTATTTCATTTCATGGGGAATGAATAGAAGAAGAAAACAGAGG
TGTTCTTGCCATCATATATGTCCTTGTTTTTTTACTG-------------------------------------------
-------------------CTGTTCTGAGGGTGCCGG-CCCCTTTGCCATTGCCAACTAACCTACCAAATTAACTAAGTC
CAGTGCTGTTGATGTTATTGACCACAAATGCTTGCTACTATAGCCATAA-ATCTTATTATTTGATCTTAATTCTTACAGC
CGCATTGCTATATACTCCTGCT---------C---------TTTTA-CCCAGTTTTGCCTAGACATGAACAGAGTGGTCC
ATCTTG-TTATCTGGTGCTTGATACAATTTGAATCTCGATTTGTGCTTTTGCAGAGCCCACTGCAGGGCCTTGCGAACGC
CGGTGATCCGATGAGCCGCCTCATCATGCAAGCACGGAACCAGACTGGCGGCGGTTTTTCCCCTCACTTTGCTGAGAACG
GATTCACCGCAGGCGGTGGCAGGATGGGTGGAA------------------------------------ACGTGTTCACA
GCCGGTGATGGCAGGATGGGTGGAAACGGATTCACAGCCGGTGATGGCAGGATGGGTGGAGTTGGATTCACAGTCGGTGA
TAGCAGGATGGGCGGAATTGGATTCACAGCCGGTGGTGCCAGGATGGGTGGAAACGGATTCACAGC---TGGTGGCAGGT
CGGGCCGGTTTAACATGGAAATGCTGCGGCCAGCAGGGGCTCCGCGAGTAAAGAGGGACGTTCTCCACGTCACGCTCAAG
GGGAAGAAGACCTTTGTGACGGTGACGGACGTCAAGGGGAACAGGAAGGCTGGGGCTTCCGCTGGCTGCTTGGAGGATCG
AAAGGGGCGGTCTCGTCTTGCTCGGTATGCTGGTGAAGCTACAGGGGAACACATGGGGCGAGTCGCCAGCAAGATTGGCC
TAAAGTCGGTCGTCGTGAAGGTGAAAGGATACTCCTTTTTCAGGAAGAAGAAGAAGGTGATCATGGGCTTCGCGGACGGT
TTCCGGGGCGAAAGAGTGAGAACCCCATCTCCTATCATGTACGTCCATGACGTGACCCAGCTCGCGCATAATGGATGCCG
GCTGCCCAAAAAGGTAAGGAAGTAAGACTGATAATAGCCCCCAGCAAGAAGTGCGGAGATCAATATCCTGTC-CCAAGGA
GAAACAAATTAAGAACGATATGTATGTATCGACAGGTTTTGTAATAATGTCATGAGCCTGGAAGTATTTATGAATACTTA
TTAGACAGTCTTAGAT--TGGCTCTTGTAAGACAAACAT-TTTTGTCATTTCCTGTAATGTTGCTGAAGTGATGGATTTG
TTTTGATATGGCATGGTTGCATTGCATGCAGTTCCCTCTCCTTTTGTGGAGCTCCTATATAGTTACAGCACTGCAAGTGT
ATGTGTTGAGAAGCTGCTAATTTCTTGTTTTTCAAGAAGAGAAAAAGTTTGAAGTCTTAAGTAATTTGGAAGGGTTGCAT
CCCTCTTCCACATTAAGATAATGTTCTGCTTTAATGGTTGGCTCTGTCCCCGTATTTTTCTTTTTTTATCCGACAAGAAA
ATATTCTGAGTTTTTTATAAAATT-AAACTTTGTCTGCGATTCTTTC------A--AGCAAGACAAAATTCAAACTCTG-
-TAGGCCAAAATATGCAGAACTCCCTTCAT---ATTCCCTCTTCTCCTCTCACTAAAATTTATCTGTTGA----------
--------------GATCCCTTTTGCAGTTAATTAGAAGGGT-GAATTAGTGGGTGGTTATTTAGAACTTAACTACTAGA
ATCTCTATGTAGTTAGAAGGAGTGACTTCTCTG--GTTTTGAAGGTTCAGA--------GAAGAATGTAATATTGTGAAG
GAACTGGGGG---------------AAGATTAGTTGCAGCAAGGAAAACATATAATAGGATGTAATCTTGACAGTATCAT
ACACAGACCATGCATGTAATAGGAT-------------------------------------------------------
----GAATGATTCCATGATTTTATTAATGACAGTGTACCACATATATATCACTCAA----AATTGCTACCAACTGCTTAT
GTTCATAATAGCAACGCCGAAAAAGAA----------GAAAGCATAGTTAACCCAGATTGCAACC-AAAATGCTCACAAC
ACTGAATTTTGGTGCACACACTACTGCATCCAATCATTCGGCTTGTACATGAATGCTTCCCTTCTGAGTATTATTATAAA
TCTTCATTAAGCTCCCGATCAATCCTTTTTCCACCAAGCCCAT-TCCATCCATCGTTGGCATATATAAATAGCATCTCCA
GCCCCA
>chr2B_904
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-------------------------------------------------------------ATGTGGGCCCTAAACGGTA
GTCAGGTCCAGTTAAAGCCCAAGA--GAAAGACGGCCTAACCCAAACGAGAGACGCACTCGAATCTTCGCAACAGCCTCG
CCCCGCCGCCGCCGCCGCCGCGGCCACGACCGGATCTCGTCCTCCTCCCGGCCCAGCAGAGGGCGATGGCGGCGAGGGCG
CTTGGGCTCGCCGGCCGAGCGCTCCTGCGGCCGCTCTCCTCGCCGGGCGCGCAGCGGCTGCTGTCCAGTGACAAGGTACG
CTCACCAGCTCCCCATCCCTCCCTCCCTTCCATTGCATTTCCCCGCAAGAAACCCGATACAGATCCATCTAACTCGCAAC
ACGATGGTAGCCAGGTAGACTGAACC-------AAATCTTGAACTGAAACAGACAGATAGGACAGATTCGTGAGCTAGGC
AAGTGTGCGCATGCTTCCCACCAATTCAACTGCGATGTAATTTCATTTCGTGGGGAATGATTAGG---------CAGAGG
TGTTCTTGTCATCATAAATTCCTTTTTTTTTACTGGAGTACTCCCTCTGTAAAGAAATATAAGAGCATTTAGATCACTAC
TTTCTTTACGGAGGGAGTACTTTCCTAAGGGTGCCGGCCCCCTTTGCCATTGCCAACTAACCTACCAAATTAACTTAGCC
CAGTGCTGCTGATGTTGTTGACCACAAGTGCTTGCTACTATAGCCATGA-ATCTTATTGTGTGATCTTTATTCTTACAGC
CGCATTGATATATACAGTCATTGTCTCCTGCC---------TTTTC-CCCAGTTCTGCCTGGACACGAACAGAGTGGTCC
ATGTTG-TTATCTGGTGCTTGACACGATTTGTATCTCAATTTGTGCTCTTGCAGGGCCCACTGGAGGGCCTCGTGAACGC
CGGTGATCCGATGAGCCGCCTCATCATGCAAGCACGGAACCAGACTGGCGGCGGTTTTTCCCCTCAATTCGCTGAGAACG
GGTTCACAGCAGGTGGTTTCAGGATGGGTGGTA------------------------------------ATGGATTTACA
GCCGGTGGTGGCAGGATGGCTGGAAACGGATTCACAGCCGGTGATGGCAGGATGGGTGTAAACGGATTCACAGCCGGTGA
TAGCAGGATGGGCGGAATTGGATTCACAGCCGGTGGTGCCAGGATGGGTGGAAACGGATTCACAGCCGGTGGTGGCAGGT
CGGGCCGGTTTAACATGGAAATGCTGCGGCCAGCAGGGGCTCCGCGAGTGAAGAGGGACGTTCTCCACGTCACGCTCAAG
GGGAAGAAGACCTTTGTGACAGTGACGGACGTCAAGGGGAACAGGAAGGCTGGGGCTTCCGCTGGCTGCTTGGAGGATCG
AAAGGGGCGGTCTCGTCTTGCTCGGTATGCCGGTGAAGCAACAGGGGAGCACATGGGGCGAGTCGCCAGCAAGATTGGCC
TCAAGTCGGTCGTCGTGAAGGTGAAAGGATACTCCTTTTTCAGGAAGAAGAAGAAGGTGATCATGGGCTTTGCGGATGGT
TTCCGGGGCGAAAGAGTGAGGACCCCGTCTCCTATCATGTACGTCCACGACGTGACCCAGCTCGCGCATAATGGATGCCG
GCTGCCCAAAAAGGTAAGGAAGTAAGACTGATAATAGCCCCCAGCAAGAAGTGTGGAGATCAGTATCCTGTC-CCAAGGA
GAAACAAATTAAGAACGATATGTATGTATCGACAGGTTTTGTAATAATGTCATGAGCCTGGAAGTATTTATGAATACTTA
TTAGACAGTCTTAGAT--TGGCGCTTGTAAGACAAACAT-TTTTGTCATTTCCTGTAATGTTGCTGAAGTGATGGATTTG
TTTTCATA------------------------TCCCTCTCCTTTTGTGGAGCTCCTATGTAGTTACAGCACTGCAAGTGT
ATGTGTTGAGAAGCTGCTAATTTCTTGTTTTTCAAGAAGTGAAAAAGTTTGAAGTCGCAGGTAATTTGGACGGGTTGCAT
CCCTCTTGCACATTAAAATAATGTTCTGCTCTAATAGTTG-CTCTGTCCCCTTG-TTTTCTTTTTTTAACCGACAAGAAA
A-ATTCTGAGATTTTTATAGAATT-AAACTTTGTCTGTGATTCTTTC------A--AGCAAGACAAAATGCAAACTCA--
-----CCAAAATATGCAGAACTCCCTTCATCATATTCCCTCTTCTCCTCTCACTAAAATTTCTCTGTTGA----------
--------------GATCCCCTTTGCAGTTAACTAGAAGGGC-GAATTAGTAGGTGATTATTTAGAACTTAACTACTAGA
ATCTCTATGTAGTTAGAAGGAGCGACTTCTCTG--ATTTTGTTGGTTCAGA--------GAAGAATGTAGTATTGTGAAG
GAACTTGGGG---------------AAGATTAATTGCAGCAAGGAAATCACTG----------AATCTTGACAGTATCAT
ACACAGACCATGCATGGAATAGGAT-------------------------------------------------------
----GAATGATTCCATGATTTTATTAATGACAGTGTATCACATATATATCGCTCAA----AATTGCTACCAACTGCTTAT
GTTCATAATAGCAACGCCGAAAAAGAA----------GAAAGCATAGTTAATCCAGATTGCAACC-AAAATGTTGACAAC
ACTGAATTTTCGTGCACACACTACTGCATCCAATCATTTGGCTTGTACATGAATGCTTCCCTTCTGAGTATTATTATAAA
TCTTCATAAAGCTCCCAATCGATCATTTTTCCACCACGCCCATATACATCAATCGTCGGCATATATAAATAGCATCTCCA
GCCCCA
>chr3A_1416
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----------------------------------------CCTTTGCCATTTCCAGCTAACCTAACGAATTAACCGTGTC
CGGTGCC-----TGTTGGTGACCGCAAATGCCTGCTGCTATAGCCTTAA-ATCTTGTTAGCTGATA--------------
--CATTGCTATAA-----GTACACACACTTTTTCTGCA-TTTTTTT-CCAAGTTTTGCCGAGACATCAACAGAGTGGTCG
GTCTTGT-TATCCGGTGCTTGATACAAATTGAATCTCAATTTGTGCTTTTGCAGGGTCCATTGCAGGGCCTCACGAACGC
CGGTGATCCGATGAGCCGCCTCATCATGCAAGCACGGAACCAGACTGATGGCGGTTTCCCTCGTCACTTTGCTGAGAATG
GATTCACAGCTGGTGGTGGCAGGATGGGTGGAA------------------------------------ACGGATTGACA
GCCGGTGATGGCAGGATGGGTGGAAACGGATTTACAGCCGGTGATGGCAGGGTGGGTGGAAACGGATTCACAGCCGGTGA
TGGCAGGATGGGTGGAAACGGATTCACAGCCGGTGGTGGCAGGATGGGTGTAACCGGATTCACAGCCGGTGGTGGTAGGT
CGGGCCGGTTTAACATGGAAATGCTGCGGACAGCAGGGGCTCCGCGAGTAAAGAGGGACGTTCTCCACGTCACGCTCAAG
GGGAAGAAGACCTTTGTGACTGTGACGGACGTCAAGGGGAACAGGAAGGCTGGGGCTTCCGCTGGCTGTTTGGAGGATCG
AAAGGGGCGGTCTCGACTTGCTCGGTATGCTGGTGAAGCAACAGGGGAACACATGGGGCGAGTTGCCAACAAGATTGGCC
TCAAATCGGTCGTTGTGAAGGTGAAAGGATACTCCTTTTTCAGGAAGAAGAAGAAGGTGATCATGGGCTTTGCGGATGGT
TTCCGGGGCGAAAGAGTGAGGACCCCGTCTCCTATCATGTATGTCCACGACGTGACCCAGCTCGCTCATAATGGATGCCG
GCTGCCCAAAAAGGTAAGGAAGTAAGACTGATAAGAAGCCCCGGCAAGAAGTGTGGAGACCAGTATCCTGCCTCCAAGGA
GAAGCA----AAGAACGATATGTATGTATCGACTGGTTTCGTAATAATATCATCAGGCTGGAAGTATTTATAAATACTTA
TTAGACAGTCTTAGAT--CGGCTTTTGTAACTCAAAACCATTTTGTCATTTCCTGTAATGTTGCTGAGGTGATGGATTTG
TTTTGATATGACATGGTTGCAT-----GCAGTTCCCTCTCCTTTTCTGGGTTTCCA-----------------------T
ACGTGCTGAGATGCTACAAATTTCTTGACTTGCAAGAAGTGAAAAAGTATGAAGTTGCAAGTAATTTAGACGGGTTTCA-
----------CACTAAAATAATGTTCTGTTTTAATGGTTGGCTCTATCCCCTCATTTTTCTTTTTTTAACCGGCGAGAAA
ATATTCTGAGATTTCG-TAAAATT-AATCATTGTCTGTGATTCTTTTATTTTTA--AGCAGGGCAAAATTC-AACTCTT-
-TAGGCCAAAATATGCAGAGCTCCCTTCAT---ATTCCCTCTTCCCCTCTCACTCAAACTTCTCTGTTGAAGCATTGGAG
TGGTTACAGGGGTGAATCTCCTGTGCAATTAATTAGAAGGGTGGAATTAGTGGGTGATTATTTAGAACTTAACTAGAATC
TCTAG--TGTGGTC---AGGAGTGGCTTCTCTG--CTATTATTTTGTCTGCATTAGTTGGAAGGATGTAGTATTGCAAAG
GAACTTTTAACTAGAATCTTGCTGCAAGATTAGTTGCAGCAAGGAAAACACTG----------AATCTTGACAGCATCAT
ACACAGACCATGCATGGAATGAGAT-------------------------------------------------------
----CAATGATTCCATGATTTCATTAATGACAGTGTTCCACATATATATCACTTGA----AATTGCTACCAACTGCTTAT
GTTCATAATAGCAAAGCCAAAAAAGTA----------GAAATCATAGTTAACCCAGATTACAACC-AAAATGCAGACAAC
ACTGAATTTTGGTGCACACACTACTGCATCAAATCATTCTGCTTGTACATGAATGCTTCGCTTCAGACTATTATTATAAA
TCTTCGTAAAGCTCCCGATCGATCCTTTTTCCACCAGGCCCATATCCATCAATCGTCGGCATATATAAATAGCATCTCCA
GCCCCA
>chr3D_1416
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----------------------------------------CCTTTGCCATTTCCAGCTAACCTAACAAATTAACCGAGTC
CGGTGCC-----TGTTGGTGACTGCAAATGCTTGCTACTATAACC-TTA-ATCTTATTAGCTGATA--------------
--CATTGCCATAC-----GTACACACACTTTTTCTGCATTTTTTTT-CCAAGTTTTGCCGAGACATCAACAGAGTGGTCG
GTCTTGTTTATCTGGTGCTTGATACAATTTGAATCTCGATTTGTGCTTTTGCAGGGCCCACTGCAGGGCCTCACGAACGC
CGGTGATCCGATGAGCCGCCTCATCATGCAAGCACGGAACCAGACTGACGGCGGTTTTCCCCGTCACTTTGCTGAGAACG
GATTCA------------------------------------------------------------------------CA
GCCGGTGGTGGCAGGATGGGTGGAAACGGATTTACAGCTGCTGATGGCAGGATGGGTGTTAATGGATTCACAGCTGGTGA
TGGCAGGATGGGTGGAAACGGATTCACAGCCATTGGTGACAGGATGGGTGGAACCGGATTCACTGCCGGTGATGGCAGGT
CCGGCCGGTTTAACATGGAAATGCTGCGGCCAGCAGGGGCTCCGCGAGTAAAGAGGGACGTTCTCCACGTCACGCTCAAG
GGGAAGAAGACCTTTGTGACTGTGACGGACGTCAAAGGGAACAGGAAGGCTGGGGCTTCCGCTGGCTGTTTGGAGGATCG
AAAGGGGCGGTCTCGTCTTGCTCGGTATGCTGGTGAAGCAACAGGGGAACACATGGGGCGAGTTGCCAGCAAGATTGGCC
TCAAGTCGGTTGTTGTGAAGGTGAAAGGATACTCCTTTTTCAGGAAGAAGAAGAAGGTGATCATGGGCTTTGCGGATGGT
TTCCGGGGCGAAAGAGTGAGGACCCCGTCTCCTATCATGCATGTCCACGACGTGACCCAGCTCGCGCATAATGGATGCCG
GCTGCCCAAAAAGGTAAGGAAGTAAGACTGATAATAGCCCCCAGCAAGAAGTGTGGAGATCAATATCCTGCCTCCAAGGA
GAAGCA----AAGAACGATATGTATGTATCGACTGGTTTCGTAATAATATCATCAGCCTGGAAGTATTTATGAATACTTA
TTACACAGTCTTAGATCGCGGCTTTTGTAAGTCAAAACCATTTTGTCATTTCCTGTAATGTTGCTGAGGTGATGGATTTG
TTTTGATATGACGTGGTTGCAT-----GATGTTCCCTCTCCTTTTGTGGATTTCCTATATAATGATAGCACTGCGAGTGT
ACGTGCTGAGATGCTACTAATTTCTTGATTTGCAAGAAGTGAAAAAGTATGAAGTTGCAAGTAATTTAGACGGGTTTCG-
----------CACTAAAATAATGTTTTGTTTTAATGGTTGGCTCTGTCCCCTCATTTTTCCTCTTTTAACCAGCGAGAAA
ATATTCTGAGATTTGA-TAAAATTAAATCATCGTCTGTGATTCTTTTAATTTTA--AGCAAGGCAAAATCC-AACTCTT-
-TAGGCCAAAATATGCAGAACTCCCTTCAT---GTTCCCTCTTCCCCTCTTACTCAAACTTCTCTGTTGAAGCATTGGAG
TGGTTACAAGGGTGAATCTCCTGTGCAGTTAATTAGAAGGGTGGAATTAGTGAGTGATTATTTAGAACTTAACTAGGTTC
TCCAG--TGTAGTTAGAAGGAGTGGCTTCTCTG--CTCTTATTTTGTCTGCATTAGTTGGAAGAATGTAGTATTGCAAAG
GAACTTTTAACTAGAATCTTGCTGCAAGACTAGTTGCAGCAAGGAAAACACTG----------AATGTTGACAGCATCAC
ACACAGACCATGCATGGAATGAGATGAATGATTCCATGATTTAATCTTGACAGCATCGCACACGGACCATGCATGGAATG
AGATGAATGATTCCATGATTTCATTAATGACAGTGTACCACATATATAGCACTTGA----AATTGCTACCAACTGCTTAT
GTTCATAATAGCAAAGCCAAAAAAGAT----------GAAATCATAGTTAACCCAGATTACAACAAAAAATGCAGACAAC
ACTGAATTTTGGTGCACACACTACTGCATT-AATCATTCGGCTTGTACATGAATGCTTCCCTTCTGAGTATTATTATAAA
TCTTCATAAAGCAACCGATCGATCCTTTTTCCACCACGCCCATATCCATCAACCGTCGGCATATATAAATAGCATCTCCA
G-----
>chr3B_1419
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-------------------------------------------TTGCCATTTCCAGCTAACCCAACAAATTAACCGAGTC
CGGTGCC-----TGTTGGTGACCGCAAATGCTTGCTACTATAACC-TTAAATCTTGTTAGCTGATA--------------
--CATTGCTATAATATAAGTACACGCACTTTTTCTGCATTTTTTTTTCCAAGTTTTGCCGAGACATCAACAGAGTGGTCG
GTCTTGTTAT-----------ATACAATTTGAATCTCGATTTGTGCTTTTGCAGGGCCCATTGCAGGGCCTCATGAACGC
CGGTGATCCGATGAGCCGCCTCATCATGCAAGCACGGAACCAGACTGACGGCGGTTTTCCCCGTCATTTTGCTGAGAACG
GATTCA------------------------------------------------------------------------CA
GCCGGTGGTGGAAGGATGGGTGGAAACGGATTTACAACTGCTGATGGCAGGATGGGGGGAAACGGATTCACAGCCGGTGA
TGGCAGGATGGGTGGAAACGGATTCACAGCCCTTGGTGGCAGGATGGGTGGAACCGGATTCACTGTCGGTGGTGGCAGGT
CCGGCCGGTTTAACATGGAAATGCTGCGGCCAGCAGGGGCTCCGCGAGTAAAGAGGGACGTTCTCCACGTCACGCTCAAG
GGGAAGAAGACCTTTGTGACTGTGACGGACGTCAAGGGGAACAGGAAGGCTGGGGCTTCCGCCGGCTGTTTGGAGGATCG
AAAGGGGCGGTCTCGTCTTGCTCGGTATGCTGGTGAAGCAACAGGGGAACACATGGGGCGAGTTGCCAGCAAGATTGGCC
TCAAGTCGGTCGTTGTGAAGGTGAAAGGATACTCCTTTTTCAGGAAGAAGAAGAAGGTGATCATGGGCTTTGCGGATGGT
TTCCGTGGCGAAAGAGTGAGGACCCCGTCTCCTATCATGTATGTCCACGACGTGACCCAGCTTGCGCATAATGGTTGCCG
GCTGCCCAAAAAGGTAAGGAAGTAAGACTGATAATATCCCCCAGC---AAGTGTGGAGATCAATATCCTGCCTCCAAGTA
GAAGCAC----AGAACGATATGTATGTATCGACTGGTTTCGTAATAATATCATCAGCCTGAAAGTATTTATGAATACTTA
TTAGACAATCTTAGAT--CGGCTTTTGTAAGTGATAACCATTTTGTCATTTCCCGTATTGTTGCTGAGGTGATGGATTTG
TTTTGATTTGACCTGGTTGCAT-----GCAATTCCCTCTCCTTTTGTGGATTTCCTATATAATGACAGCACTGCCCGTGT
ATGTGCTGAGATG----------------------------------TATGAAGTTGCAAGTAATTTAGATGGGTTTCG-
----------CACTAAAATAATGTTCTGTTTTAATGGTTGGCTCTGACCCCTCATTTTT-CTTTTTTAACCAGCGAGAAA
ATATTCTGAGATTTCA-TA-----------------GTGATTCTTTTAATTTTATAAGCAAGGCAAAATTC-AACTCTT-
-TAGGCCAAAATATGCAGAACTCCCTTCAT---GTTCCCTCTTCCCCTCTCACTCAAACTTGTCTGTTGAAGCAATGGAG
TGGTTACAGGGGTGGAACTCCTGTGCAGTTAATTACAAGGGTGGAATTAGTGGGTGATTATTTAGAACTTAACTAGATTC
TCCAG--TGTAGTTAGAAGGGGTGGCTTCTCTGAACTCTGATTTTGTCTGCATTAGTTGGAAGAATGTGGTATTGCAAAG
GACCTTTTAACTAGAATCTTGCTGCAAGATCAGTTGCAGCAAGGAAAACACTG----------AATCTTTACAGCAGCAT
ACACAGACCATGCATGGAATGAGATGAATGATTCCATGAT----------------------------------------
-------------------TTCATTAATGACAGTGTTCCACATATATATCACTTGA----AATTGTTACCAACTGCTTAT
GTTCATAATAGCAAAGCCAAAAAA--------------AAATCATAGTTAACCCAGATTACAACC-AAAATGCAGACAAC
ACTGAATTTTGGTGCACACACTACTGCATCCAATCATTCGGCTTGTACATGAATGGTTCCCTTCTGAGTATTATTATAAA
TCTTCATAAAGCTCCCGATCGATCCTTTTTCCAGCATGCCCATATCCATCAATCGTCGGCATATATAAATAGCATTTCCA
GCCCCA
>SNPs
SSSSSSSSS---S--S--------SS---------------------------------S--S-------S---------
S--S----S----SS--S-----S-------S-----SSSS----------S-S-------S---S--------------
-S--S--------SS----S--S----------------------------SS-SSSS-------S----------S--S
----------------------S-S-------S----------------------------S-S-S--------------
------S----------------------SS--S----SS--SS------------------S--S--S----------S
---------------S------S-------------------SS-SSSSSSSSSSSSSSSSSS---------------S-
------S----S--S-S-----------------------------------S----------S--S------S------
-S---SS----------------------S----------S------S---SS-------------------------S-
--------------------S-----------------------S-S---------------------------------
---S-SSSSSSSSSSSSSSSSSS---------------S-------S--------SS------------S----------
---------S----S-----SS---------------------------------SSSSSS-------------------
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-------------------------------------------S------S-----SSS---SS-----S----------
--------------------------------------------------S----S------------------------
----------------------------------------S---S-----------------------------------
---S--------------------------------------------S-------------------------------
--------------------------S-----------------------------------------------------
-------------------------------------------S------------------------------S---S-
---------S-S------------S-------------------------------S--S-----------S----S---
-----------------------------------------------------------S---------------S----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------S--------------------------S--------------------------------------
----------------------------------------------------------S---------------S-----
-------------------------------------------------------------------SS-----------
--------------------------------------------------------------------------------
---------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------
---S---------------------------------S------------------SS----------------------
----------------------------S---------------------------------------------------
----------------------------------------S--------------------------S------------
--------------------S-----------------------------------------------------------
--------------------------------------------------------------------------------
-------S---S-------------------------------------------------------------S------
--------S-----------------------------------------S-----S-----------------------
--------------------------------------------------------------------------------
--------------------------------------S-----------------------------------------
--------------------------------------------------------------------------------
--------------------------S-----------------------------------------------------
-------------------------------------------------------S------------------------
----------------------------------------------------------S---------------------
-----------S-S-------------------------------------------------S------SS-------S
S-----------------------------------------------------------------S-------------
--------------------------------------------------------------------------------
----------------------------------------S-------S-------------------------------
--------------------------------------------------------------------------------
----------------SS--------------------------------------------------------------
--------------------------S----------S-----SSSSSSS-S-SSSSSSS--------S-----------
-------------------S-S-SS--SSSSSSSSSS--------------------S----------------------
--------------------------------S-----------------------------------------------
------------------------------------------------------------------------S-------
------
>forward_590
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----------CTTGGGAGCAAATTTGGCCC--------------------------------------------------
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>reverse_3011
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--------------------------------------------------GATGGCAGGATGGGTGGAAA----------
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>forward_2998
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------------------GCAGGATGGGTGGAAATGGA------------------------------------------
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>reverse_3867
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--------------------------CGCAGTTCCCTCTCCTTTTG----------------------------------
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------
