>input_sequence_48952
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----------------------------------------AGTGCTAACAGGGTTGTTGCAGTGCAGCCATGGCCATGAA
AGCACAGCTCCTTCGGTTGCTTCCTCTGCTGCTCCTGCTTCTTCCTTCTCCCCTCCGCAATTACCTCTCGAATGATGAAG
GCGCTGGTGATGGCGGAGCCGGGAAGGGCCGGCTCCAAGTCTACCACCCGATAATCTTGTTCCCTGGCATAAGCTGCCCC
AACCTGGACGCGCGGCTCACCGACGCCTACACGCCGTCGCTGCCCCGCTGTGGCACGTTCAAGGGGAAGGGGTGGTTCCC
GCTATGGAACAACACGCAGGACGTGCTCGACCATGACTACCTGCCGTGCTTACAGGAGCAGATGAGCCTCGTGTACGACC
CCGTCCTCAACGACTTCCGGAACCAACCCGGTGTCGAGACGCGCGTGCCGGACTTCGGCTCCTCCTATGGCTTCACCTCA
AAGGATGAACTGTAAGTTGATATTTAAGTCACC-----------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------T
ACTGGTCTAGTATACTGTACCAGGTA------------------------------TGTACTCTAAGAGTTCTTCATCTG
GAAATTGGCCTTACGTTAATGCTTTC-----TCC----AGGGGCAGCCTTAACATGTTTTGCATGTTAAAACTCCGT---
-------------------------------------GAAGCACTCGAGATAGTAGGTTATCACGACAGAGATACCCTTT
TCGGAGCTCCTTATGACTTACGCCACGCTCCACTTTCGCCCGGGCAGCCATCTCAGGTGTACACCGACTACTTTGCCAGT
GTCAAGGATCTGGTGCATCATGCGAGCGAGAAGAATGGGAACAAGCCCGTCATCCTTGTCGGGCATAGCTTCGGTGGCAA
GGCAATCCTTGACTTCGTCAATTCGACTCCCCTTTCATGGAGGAAAAAATTCATTAAACACATTGTCCTAGCCGCGCCCA
CACCTCCTACTGGATTTTTGGAGGTCCTCAGGAACCTCGCCTCGGGGCCGTCAG---TCATTCGTGTACCGACGGTGCCG
TGGCTGGGTTTACGGCCAATGTGGAGAACTTTTGCGAGCTCCCTTACATCCTTCCCTTCCCATAGGGTTTTTGGTCATCA
GCCACTTGTAGTCACCCAACATAGGAACTACTCATCGTATGACTACGCAGATTTTCTAACGGCTCTCGGTATCAGCACTG
ACA------------TCATAAAACAGATGCTTCCCGTCAATTTGAAGGTTGATGCTCCAATGGTGCCAACAACATACCTC
AGTGGCATTGGTATCCAAACGGTAGAACAGATGGTATACTGGGATGGTAACTTTGATGTGGAGCCGGAGTATGTGTATGG
TGACGGTGACCTTGTCATCAATATAGCTAGCTTGTTAGCATTCGTGAAAGAAATGAGTAGGCAACAACAGCTGAGTAACA
TACACTTCAAGTTCGTCAAGATTGTTAATGTTACCCACTCTACTATTGTCTTCCAGGAACGTCCGCTCAAGATAGTTATG
GCTGAAATTCTAGAAGCAAATAGCAGAAGAGACATCATGTGATACTTTCA-------------TGTTTTCGTTCATATTA
AGC-ATGTTCTGTTCTCGTCAGAGAATTCGTCATTGTTGTGGAATAAA--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------
>chr1D_1_TraesCS1D01G036000
ATACTTTGTGCGGTAAAAATGACACATCTACTCACTACTCAAGTTGACTACCTATTATCCTCGATACTTTGTAATGGAAG
GAATGTGCCCCATGTAGCAAATAACATGGAAATATTAGCGCTATGCATATACATGGGTGAGATATTTACGTATTTAGCTT
CATGCTTATTTGTACAAAGGGAAAAGTATATTTTTATTTGAACACAATACAGACGCAAGCGTTCATACATAAGCGCATAC
ACTCATCCCTATGAATGCACACACGCACACCCTACCTTTATGAGCACCTTCGAGAGACTGAGCCGGCATATCATCTTGAG
ATTTACGAAGTCACCGTAGGCGTCTCGTCGGCGGCGGGAATGTCTCCTCCCGTGAAAGCGCATCACCGGATATTCTGAAA
TAAATCCAGGAATAATGGAGCACTAGAACTTGAACCTTGATGGGCTGAGGATACCATTGTGCCTCTAACCATCCAACCAC
AGGTTGTATTAACTATACATGACAATGTGCATATCTTATTTGTACAAAGGTAAAAAAAAGGAGGTAAATAGTACTACCGA
TATGGGATGGTGCAAAATGGGCTTGTTCATATTATTTGGGATCATCCTAAAATTCCCCTAAACTCAGGGTGTAAGTTGTG
ACTACGTTCAATCTCCTTAATTATTTGCTATTTTACAGCCTGAAAACAAACAGTATAGTATACAAACTTTGTACTAAATC
AGCGACATTTATTTTGGGACAGAAGGACTATAATTTTTTACTGACGGCAACCAACTATATAGTACAATATTTCCAATGCG
GAACTGATCAATTAGAACAAAGAGTGTGGTGCAAAATTTTGTGATCTCGAAATAGAAGTAACAACCCGTGCATGATTGGT
TTCCTAGCCGTAGGAGTACGAAGTAGACGTGTCCGCATTAAGATTGAACGTGCATTGTCGGCTCAGGCTCCACTGCCCAA
CGCTATATATATGACCCGCACCATGACAACCGTGTAGGCGAGTGCTAACAGGGTTGTTGCAGTGCAGCCATGGCCATGAA
AGCACAGCTCCTTCGGTTGCTTCCTCTGCTGCTCCTGCTTCTTCCTTCTCCCCTCCGCAATTACCTCTCGAATGATGAAG
GCGCTGGTGATGGCGGAGCCGGGAAGGGCCGGCTCCAAGTCTACCACCCGATAATCTTGTTCCCTGGCATAAGCTGCCCC
AACCTGGACGCGCGGCTCACCGACGCCTACACGCCGTCGCTGCCCCGCTGTGGCACGTTCAAGGGGAAGGGGTGGTTCCC
GCTATGGAACAACACGCAGGACGTGCTCGACCATGACTACCTGCCGTGCTTACAGGAGCAGATGAGCCTCGTGTACGACC
CCGTCCTCAACGACTTCCGGAACCAACCCGGTGTCGAGACGCGCGTGCCGGACTTCGGCTCCTCCTATGGCTTCACCTCA
AAGGATGAACTGTAAGTTGATATTTAAGTCACC-----------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------T
ACTGGTCTAGTATACTGTACCAGGTA------------------------------TGTACTCTAAGAGTTCTTCATCTG
GAAATTGGCCTTACGTTAATGCTTTC-----TCC----AGGGGCAGCCTTAACATGTTTTGCATGTTAAAACTCCGT---
-------------------------------------GAAGCACTCGAGATAGTAGGTTATCACGACAGAGATACCCTTT
TCGGAGCTCCTTATGACTTACGCCACGCTCCACTTTCGCCCGGGCAGCCATCTCAGGTGTACACCGACTACTTTGCCAGT
GTCAAGGATCTGGTGCATCATGCGAGCGAGAAGAATGGGAACAAGCCCGTCATCCTTGTCGGGCATAGCTTCGGTGGCAA
GGCAATCCTTGACTTCGTCAATTCGACTCCCCTTTCATGGAGGAAAAAATTCATTAAACACATTGTCCTAGCCGCGCCCA
CACCTCCTACTGGATTTTTGGAGGTCCTCAGGAACCTCGCCTCGGGGCCGTCAG---TCATTCGTGTACCGACGGTGCCG
TGGCTGGGTTTACGGCCAATGTGGAGAACTTTTGCGAGCTCCCTTACATCCTTCCCTTCCCATAGGGTTTTTGGTCATCA
GCCACTTGTAGTCACCCAACATAGGAACTACTCATCGTATGACTACGCAGATTTTCTAACGGCTCTCGGTATCAGCACTG
ACA------------TCATAAAACAGATGCTTCCCGTCAATTTGAAGGTTGATGCTCCAATGGTGCCAACAACATACCTC
AGTGGCATTGGTATCCAAACGGTAGAACAGATGGTATACTGGGATGGTAACTTTGATGTGGAGCCGGAGTATGTGTATGG
TGACGGTGACCTTGTCATCAATATAGCTAGCTTGTTAGCATTCGTGAAAGAAATGAGTAGGCAACAACAGCTGAGTAACA
TACACTTCAAGTTCGTCAAGATTGTTAATGTTACCCACTCTACTATTGTCTTCCAGGAACGTCCGCTCAAGATAGTTATG
GCTGAAATTCTAGAAGCAAATAGCAGAAGAGACATCATGTGATACTTTCA-------------TGTTTTCGTTCATATTA
AGC-ATGTTCTGTTCTCGTCAGAGAATTCGTCATTGTTGTGGAATAAAACTATTATGTAAGGATTTCTCATAAGTTGAAT
GAGAATCAGAGACCTCACTACTATACATCCACATGGTTAGATTAGAAATTGATTGCAATTNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACACACAC
ACACAAACTTGAACGTCTGCGATGAGCCGGGCCAAAAAACGATCGCTTGCAGTCTGATGCACATCACAAACATTTGAGTT
TGATAGACCATGTGCGGTGTGAACATCCAGATAAGTCATAGTTCCTACTTTGGTACATGTTTACAATGTGCTTGTCACGC
CGCACTGTTACATTTGTGGTCTTACCGGACACTTTTCGGTCGATAGCCCAGCGGTGTTGTGCGACAACTGTATGAAACGG
GAGCACAAGTCTGGTGATGGGATTTTTTCTTCTGTTCGTTAGCTTTGCCGAGCGTTTACACTCGGGAAACCAAATGATTT
CCACAGGTTCTGTCCCCCAAAGAATGAATTTTACCGAATATAAACATTTGCCGAGTCCCAAAAGAACACTCGGGCAACTC
ATCACCAAGTGCGCGACGGAAAAAACACGACGAAGTTCTTGGTTGGTCGTCTACGGTGAAGTCGTGGTCGCTTGGTCAGG
GAGAGGTGACGACGATGACGCTTTGCTGACATCCTCGACAATGTTCCCCTTTTCGGCTGTCTTTGGGGGTATTGTGCGTA
GCCCAATTGGTCTGGGTGCCTTGTGTTTTAGGCGTGATGTAACGGTTTTCGCTTGGTTTTCCGCAAATTAACTCGACAAC
TCTCCTTC
>chr1A_1021
--------------------------------------------------------------------------------
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------------------------------------------------------------AGTGCAGCCATGGCCATGAA
AACAGAGCTCCTCCGTTTGCTACCTCTGCTGCTCCTGCTCCTTCCGTCTCCCCTCCGCGATTACCTGTGGACTGATGAAG
CCGCCAGCT---GCAGAGTCGGTCAAGGCCAGCTCCAAGTCTACCACCCGATAATCTTGTTCCCTGGCATAAGTTGCCCC
AACCTGGAAGCCCGGCTCACTGACGCCTACACCCCGTCGGTGCCGCGCTGCGGCGCACTCAAGGGGAAGGGATGGTTCCC
TCTCTGGAACAACACCTGGGACGTGCTCGACCATGATTACCTTCCGTGCTTACAGGAGCAGATGAGCCCTGTGTACGACC
CCATCCTCAATGACTTTCGGAACAGGCCTGGCGTCGAGACTCGCGTGCCGGACTTCGGCTCCTCCTACGGTTTCACCTCA
AAGGGCGAAGTGTAAGTTCATATTCAAGTGATCCCTTGGTAACTA-----------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------ATTCATTTAGT
ACTCATTTATTATACTGCACCCTTTTTCGAAAAGAGGGGAAAGCCGTTTCTTCTTGTGTACTATGAGAGTTCTTGATCCA
GAAATTCGCCTT-------------C-----TTC----AAGGGCGGCCGTAACTTATTTTGCATGTCAAAACTTCTTCAG
GGACGGACGTAACTTATTTTGCATGTCAAAACTCATTCAAGAACTGGAGGCAGTAGGGTATCGTGACCGCGATACCCTTT
TCGGAGCTCCTTATGACTTACGGCATGCTCCACCTTCACCCGGCCAGCCATCTCAGGTGTACACCGACTACTTTGCCCGT
GTCAAGGATTTGGTGCAGCACGCAAGCGAAAAAAATGGGAACAAGCCCATCATCCTCGTCGGGCACAGCTTCGGAGGAAA
GGCAGCCCTTGACTTCGTCAATTGGACTCCCTTTTCATGGAGGAAAGAATTCATCAAACACATGGTCCTAATCGCGCCCA
CACCTCCTACTGGCTTTGTGCAGGTGCTCATGAACCTCGTCTCGGGTCCGTCAG---CCATTCTTATACCGACGGTAACG
TCGCTAGATTTGCGTCCAATGTGGAGAACTTTCGCGAGTTCCCTTGTATCCTTACCGTCTACTAGGGTTTTTGCTCACGA
GCCGCTTGTAGTCACCAAACATACGAACTACTCGGCGTATGACTACAGAGATTTGCTCATGGCACTCGGTTTCGGCACTA
ACA------------TCATAAAATGGGTACTTCATATGAAGCAAAAGGTTGATGCTCCATTGGTGCCAACGACATACCTC
AATGGTGTGGGTATCCAAACAATAAATCAGGCAGTATACCGGGATAGTAACTTTGATGTGGAGCCGGAGTATGTATATGG
CGATGGTGACGATATCATCAACTTAGTTAGCTTGTTGACATTCGTGGAAGAAATGAGAAGGCAGCAACATCGGAGTAACA
TACACTTCAAGTTCATCAAGATTGCTCATACTAACCACTCTCACATTCTAATTCAGGAACGTTCACTCAAGAGAGTTATG
GCTGAAATTCTAGAAGCTAATTGCAGAAGAGACATCATGTCATAGTTTTG-------------TGTTTCCGTTCATATAA
AAA-ATGTTGTATTCTCGTTGGAGAAGCTGGCATTGTTGTGGAATAAAAGTATTATGTAAGGATATTCTATAAATTGAAT
AAGAACCAAGGCCTTGGTTACTATACA-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------
>chr5D_1028
--------------------------------------------------------------------------------
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-------------------------------------------------------------------CCATGGCGATGAA
CACAGCGCTCCTTCGGTTACTACCTCTGATGCTCCTGCTCCTGCCGCCTCCCCTCCGCCATTACCTCTCAGCGCCGCCGA
GTGATCACGGCGGCGCAACCGAG------CAGCTCCGAGTCTACCACCCCATAATCCTCTTCCCTGGCTTCAGCTGCCCC
AACCTGGAGGTGCGGCTCACCGACGCCTACACGCCGTCGCTGCTTCG---------------------------------
-----------------------------------------------------AGGAGCAGATGACCCTCGTCTTCGACC
CCGCCCTCGACGACTACCGCAACCTCCCCGGCGTCGAGACCCGAGTGCCGGGCTTCGGCTCCGCATACGGATTCACCTCC
AAGAATGACGTGTAAGTTTGTAGTACTACTCCCTCGGTTTCCCTATTCTAGTGCGTACATCCTTTTAAATAATAAAGATA
TACAAACTTTGCAAAGTTTAGCCAGCGTTACATAGAAAAATATCAACCCTAAAAGTGCCTAATAAATAAAGTGGTACTAA
AGTTGAAATACTTATTTTGGTACGGAGGGAGTGTAACGGAAAACTATGTTTCACGATGTAGCTCATGGTATTCAATTAGA
TCTCATATTTTTCTCTATAATTTTGGTCAAGCTTTACATATCATGACTTGCACGTACCCT--------ATTCTAGATCAG
TCTATTGGCACTTACTGCATTATGTTTGCCATGC----ATGTCCAGGCATAACATGTTTTGTATGATGAGGCTCCGC---
-------------------------------------GAAGAACTGGAAGTAGTAGGATATCGTGACAAAGATACTCTTT
TTGGAGCTCCGTACGATCTACGTCATGCTCCACCACCGCCCGGCCAGCCATCTCAGGTGTACTCTGACTACTATGCTCGT
GTCAAGGATCTGGTGCAGCTTGCCAGTGAGAAGAACGGGAACAAGCCGGTCATCCTCATTGGCCATAGCTTTGGTGGCAG
GGTCATCCTCGATTTTCTAAACTCGACTTCCCTTCCATGGAGGCAAAAGTTCATCAAGCATATGATTGTCATCTCACCCA
CACCTCCTACGGGCTTCACGCATGTGCTCTCGAACCTTGCATCCGGACCGGAGGATGTTATTGATTTTCCAACCGTTCAC
CCACTTGCATTGCGGCAGATGTGGAGGACCTTCGCGAGTCCCCTTCTATCCCTGCCATCTCCCGCTGTTTTTGGTCAAAA
GCCGCTCGTGATCACCAAAAACAGGAACTACTCGTCATATGACTACCCACAATTTCTTTCGGCGCTCGGTTTCAGCACCG
ACGAAGTTGTGCCCTTCACGAAACGGGTGCTTCCGACAATGCTGAGGGTTGATGCGCCAATGGTACCAACAACATACCTC
AATGGGGCCGGCATACAAACGATGGAGCAGGCGATATATTGGGAAGGTAACTTTGACGTCGCCCCAGAGATCGTGCATGG
CGACGGAGATGGGTGCATCAATTTGGTTAGCGTGCTGTCGTTCGCCAAGGAGCTGCATAGGCAGCAGCGGCAGAATAACA
TACACTTCAAGTTCGTCAAGATTGATCATGCCACACACTATGATATTGCTAGTCGAGAGCATTCACTTAGAATAATTATG
AATGAAGTTCTAGAAGCAAATTGCTGAAGAG-------------------------------------------------
--------------------------------------------------------------------------------
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--------
>chr1B_1501
--------------------------------------------------------------------------------
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--------------------------------------------------------TGTACTATAAGAATTCTTGATCTT
GAAATTTGCCTT-------------C-----TTAATTTAGGGGCGGCCGTAATATTTATTGCATGTCAAAACTTCGC---
-------------------------------------CAAGAACTGGAGGCACTAGGTTATCGCGATAGAGATACTCTTT
TCGGTGCTCCATACGACTTACGCCATGCTCCACCTTCACCCGGCTAGCCATCTCGGGTGTACACCGACTACTTTGCTCGT
GTCAAGAATCTGGTGCAGCATGCGAGCGAGAAGAATGGGAACAAGCCTGTCATCCTCGTCGGGCACAACTTTGGAGGCAA
GGCAGGCCTCGACTTCGTCAATTCGACTCCCCTTCCATGGAGGAAAAGATTCATCAAACACATGGTCCTAATCGCGCCCA
CACCTCCTACTGGTTTTGTTCAGGTGCTCACGGACTTTGCCTCTGGGCCGTCAG---TCATTCTTATACCGACCGCACCG
TGGCTGGGTTTGCGTCCAATGTGGAGAACTTTCGCGTGTTCTCTTATATCCTTCCCATCTACCAGAGTTTTTGGTCACGA
ACCACTTGTAGTCACCAAACAAATGAACTACTCGGCGTATGACTACAGGGATTTTCTCATGGCTCTTGGTTTCAACACCG
ACA------------TCATAAAATGGATACTTCGGATGAATCTAAAGGTTAATGCTCCGATGGTGCCAACGACATACCTA
AATGGAGTCGGTTTCCAAACGATAGATCAGGCTGTATACTGGGACAATAACTTTGATGTAGAGCCAGAGTATGTATATGG
CGATGGTGACGATGTCGTCAACTTAGTTAGCTTGTTGGCATTTGTGGAAGAAATGAGAAGGCAGCAGCAGCGGAATAGCA
TACACTTCAAGTTCATCAAGATTGCTCATACTAACCACTCTCATATTCTAATTCAGGAACGTTCACTCAAGAGAGTTATG
GCTGAAATTCTAGAAGCTAATTGCAGAAGAGACATCATGTAACAGTTTTG-------------TTTTTCCATTCATGAAA
AAATATGCTGTATTCTCGTTGGAGAAGCTGGCATTGTTGTGGAATAAAACTATTATGTAAGGATATTCTATAAATTGAAT
AAGAACCAAGGCCTTGGTTACTATACA-----------------------------------------------------
--------------------------------------------------------------------------------
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--------
>chr1D_1629
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-------------------------------------------------------------------------ACCCTTT
TCGGAGCTCCTTACGACATACGGCACGCTCCACCCTCACACGGCCAGCCATCTCAGGTGTACTCCGACTACTTTGCCCGT
GTCAAGGATCTGGTCCAGCATGCGAGCAAGAAGAATGAGAACAAGCCGGTCATCCTCGTGGGGCACAGCTTCGGAGCCAG
GGCGGGCCTCGACTTCGTCAATTCGACTCCCCTATCATGGAGGAAAAAATTCGTCAAGCACATGGTCCTAATCTCGCCCA
CACCACCTACGGGCTTTGTGCAGGTGATCACGAACCTTCTCTCGGGGCCAGAGG---TCATTGTTGTCCCAACAGTTAAG
CGGCTGGGTTTACGTCTAATGTGGAGAACTTTTGCAAGTTCCCTTACATCCTTGCCGTCTCCTCTGGTTTTTGGTTACGA
GCCGCTTGTTGTTACCAAACATAGAAACTACTCAGCGTACGACTACATGGATTTACTCACTGTGCTCGGTTTCAGCACCG
ACG------------TCGTGAAACGGGTGCTAGCAACGAAGCTAAAGGCTGACGCACCAATGGTGCCAACCACATACCTT
ACAGGTGCCAGCATCCAAACGCCAAATCAGGTGATGTTCTGGGATTGTAACTTTGATGTGGTTCCAGAGTATGTATATGG
CGATGGTGACAAGGTTGTGAACTTAGTTAGCGTGTTGGCATTCGTGAAAGAAATCAGCAGGCAGCAGCGGTGGGGTAACA
TACACTTCAAGTTCGTCAAGATTGTTAATGTTACCCATTCTACTATTGTTATCCAGGAACACCCGCTCAAGAGAGCTATG
GCTGAAATTCTAGAAGCAAATCACAGAAGAGACAATATGTGATATTTTTG-------------AGTTTTCGCTCATAATA
AAA-ATGTTCTATTA----TGGAGTAGTTGGCATTGTTGTGGAATAAAACCATTATGTAAGGACTTTTTATAAGTTGACT
GAGAATGAAAGACCTGGCTGCTATACA-----------------------------------------------------
--------------------------------------------------------------------------------
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--------
>chr5B_1676
CG------------------------------------------------------------------------------
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-----------------------------------------GGCCAGCCATCTCAGGTGTACTCCGACTACTATGCTCGT
GTCAAGGATCTGGTGCACCACGCAAGTGAGAAGAATGGGAACAAGCCGGTCATTCTCATTGGTCATAGCTTCGGCGGCAG
GGTCATCCTCGATTTCCTCAACTCAACTTCCCTGTCATGGAGGCAAAAGCTCATCAAGTATATGATTGTCATCTCACCCA
CGCCTTCTACAGGCTTTACCCAGGTGGTCACGAACCTTGCATCCGGACCC---GATGTTATTGCTGTTCCAGCCGTTCCA
TCGCTTGCTTTGCGGCAAATGTGGAGGGCCTTCGAGAGTTCCCTTCTGTCCCTGCCATCTCCTGCTGTTTTTGGTCACAA
GCCGCTCGTGATCACCAAAAACAGGAACTACTCAGCATACGACTACCCGCATTTTCTTGCAGCACTCGGTTTCAGCACCG
ACGAAGTTGTGCCCTTCACGAAACGGGTGCTTCCGACAATGCTGAGGGTTGATGCGCCAATGGTACCAACAACATACCTC
AATGGAGCCGGCGTACAAACGATGGAACATGTGATGTATTGGGAAGGTAACTTTGACGTTGCCCCAGTGATCGTGCATGG
CGACCGAGATGGGTGCATCAATTTGGTTAGCGTGTTGTCGTTCGCCAAGGAACTGCATAGGCAGCAGCGGCAGAATAACA
TACACTTCAAGTTCGTCAAGATTGATCATGCCACACACTATGATATTGCTAGTCGAGAGCATTCACTTAGAATAATTATG
AATGAAGTTCTCGAAGCAAATTGCTCAAGAGTCA----------------------------------------------
--------------------------------------------------------------------------------
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--------
>chr1A_1954
--------------------------------------------------------------------------------
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-GGCTGGGTTTACGGCTAATGTGGAGGACTTTCGCAAGCTCCCTTTCATCCGTGCCGTCTCCTCTGGTTTTCGGTTACGG
GCCGCTTGTAGTTACCAAACATAGAAACTACTCAGCGTACGACTACACGGATTTCCTCACTGTGCTCGGTTTCAGCACCG
ACG------------TCGTGAAGCGGGTGCTACCAACGAAGCTGAAGGTTGACGCTCCAATGGTGCCAACCACATACCTT
ACTGGTGCCAGCATCCAAACGCCAAATCAGGTGATGTTCTGG----------------TGGTTCCAGAGTATGTATATGG
CGATGGTGACAAGGTTGTGAACTTAGTAAGCGTGTTGGCGTTCGTGAAAGAAATTAGCAGACAGCAGCGGCGGAGTAACA
TACACTTCAAGTTCGTCAAGATTAATAATGTTACCCACTCTACTATTGTTATCCAGGAACACCCGCTCAAGAGAGTTATG
GCTGAAATTCTAGAAGCAAATCACAGAAGAGACAACATGTGATATTTTTTAGTGATATTTTTTAGTTTTTGCTCATATTA
AAA-ATGTTATATTA----TGGAGACGTTGGCATTGTTGTGGAATAAAACCATTATGTAAGGAATTTTTATAAGTTGGAT
GAGAATCA------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------
-S--S----------------S-----------------S-----S------------S------------S--------
-----S-S-SS------------S-S----S-------------------------------------------------
--------S-----------------------------------S-----S---S-SS-------------S--------
S--S-----------SSS------------------S-----S-------------------------------------
------------------------SS-----S--------S--------------------------S--S---------
---------S--------S-----S----S--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---SS-S--S-----------SSS-S------------------------------------S-----------S-----
------------SSS-SS--SS-S--------S---------------S-------------------------------
-----------------------------------------S---S---S------------S-----------------
---------------------------------S---------S---------------------------------S--
-----------------S--------------------------------------S-----------------------
------------------------------------------------------S--------S------SS--------
-------------S---S--S----S----S--------------------------------S------------S---
--------------------------------------------------------S--S-S---------------SS-
----------------S-----------------------------S----------S------------S---------
------------------------S---------SS-S---S--------------------------------------
-S---SS-S------------S--------S-------------------------------------------------
S---------SS----------S---S---------S--------------------------S-------S--------
-------------------------------------------------SS-----------------------------
---------------------S----------------------S---SS------------------------------
-SS--------S-------SS-----S-S-S-----------------------------------S-S-----------
--------S------SS----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS
>forward_270
--------------------------------------------------------------------------------
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----------ATGAATGCACACACGCACAC--------------------------------------------------
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>reverse_1112
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------ATGATGAAG
GCGCTGGTGAT---------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------
>forward_1002
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------ATGACAACCGTGTAGGCGAG--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------
>reverse_3238
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------AACGATCGCTTGCAGTCTGA-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------
