>input_sequence_48920
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-------------------ATGAAGGTCCGCGCATCGGTGAAGCGGCTGTGCGGATTCTGCAAGGTGGTGAAGCGCCGGG
GGATCGTCTTCATCCACTGCACCTCCAACCAGAAGCACAAGCAGCGCCAGGGCTTCTCCACCATCGCCGCCTGCCTCCCG
CCCCCGCCGCCCG---CCTCCGCCTCCGCCGCCGCGTTCGCCGAGTAAGAAGGCTTCCCCGCCCCCCTCTCTCGCTCCAC
GCGGTACGGTTTGTCTTTTATC--AATCGTACCCGCGAAGCAGCGCGGGCT----------------------------T
GGTCTGGTCGTGTGCTCGTGATTCGTAGGACAAATTAAGGTTGCGAGTTAGAGCTAGTGATGATGGGATTGAATCTTATC
C-------TGGTCCCTAAAGAGGCGCGATTGTGAGCATGTTTGATATCCAA---GTGGTGAACAATTT------------
-------------------TGGATCCAAGCCAACAATTTATACTTACACAAGTACCGCCTCACAAACCATTTCTAGTATT
TTTCACTAGAAGAATGACTGACCTCTCTTTACAAGGCAACACTAGCCGATAAAAAATGAGCTCAGCCAATGGTTTCAGCC
TGGATGGTAAGCTAAC----------------------------------------------------------------
--------------------------------------------------------------------TTTTCCAACTTA
GCCACTTAGTGGTTAAGTTGAATTATATGGAA--------ATCTCCATTTGCGA-TGTTCACAAGTTTGTGTTGTGAAGC
AACTTACCTATTTGTCCCATTGCATATTTGCCTGTGTCTTTTGTTTAGTGATTCCAATTTTAAATTCATTTGCTCCAGTT
GGCATGGTTTCTGTTGTGTACCTGTACCCGTCCTTGAGTGATAATTTTATGCTG-----CATTTATCGTACT--TTATAT
GGTATGATGATCTTCATACTAAATTGAAATATTAACAAGGGGCAGGAGAGTAGAGCTTCTGTCAAAACGTAACAGCTTGG
CTCACCACAGGCTGCCTTTGCCCTTTGCTAACAGTTTCTTTATAGTGTGTAGAATAATACTGCA----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------TGTGCTGTTAACCGA
TTTACCTACATGTCTCATTGCATATTTTGCCTGTGGGCTTTCTTAAGTGGTTCTGATGTTAACTTCACTCGTTGCATTTA
GCATGGTTTTTGATATGTA--CCTGTGCTTGTCATTGAGTGGTATTTTCATTCTACATTTACTTAGTACTCCCTCCGTTC
GGAATTACTTGTCGTAGAAATGGATGTATCTAGACGTATTTTACTTCTAGATACATCCATTTCCGAGACAAGTAATTCCG
AACGGAGGGAGTATGTGTTATGACGATCTCCATAGTAAGTTGAAATATTAACATGGGCCAACGACGGTGGAACTTCTGTC
AAAACATAACGGTTGCTAATAGTTGATTAGTTTCTTTAGGGGTAAAAAA----AATACTGCAATACACTTCTCCTGTTGG
GTCCATGTCCTGAA---TTCTTATTGGTTAATCATTTGTTCAGTAGGACTTATCCTGTAGCCTAATTTGACACTTGATGT
TCTCATCTTTGCT-----TTGTAGGGCTTCCAAGGTGGCCCGTCAGGAGATGTCAACGAAGTTCAACTGGCCGCTGGGTC
TAGCTGCCGTGCTCAAGAATGGTGACAAATAA------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------------
>chr5A_1_TraesCS5A01G467200
TAAGTAAATGATAAAAATTACAATCATTATAAAAAAAATTATGCATATATGTATTATTGTGTGTGTGTGTGTG-------
--------------------------------------------------------TGCGGGCACGCGCGCGCGTGTGCG
TGTTTATTTTAGTATCCTACCATCCTCAAATATCTGGATGTATTACAATACACGATTTTTTTGTGTAGCTTGCAATTCAG
GGTAAATCATAAAATTATACGCACATATACATTACATCCTTATGTGTGTGTATATATATTTTCAGTTCTTTTTTAAACTA
AAAGGATTGATTTTAGATTTTTTTTTAAA---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------TAAAAGGACTCCATGTAGCTCGGCCTCCAAA
ACACCCAACTCCACGGTTGTTTAAAATTATTGCATAAACTACATGCAATTT----AGTGAAATAAACTACATATTAAATG
TAACCCA-TTTTTTTGAGTTTGTTTATATAGATGTAACTCAAAAAGTATCATACTAAACGATGCACCATGCGTTGTTGCA
GGAATCTTGCTAAAAGAAATACATAAAAGTTGATAACAACATCTAGAACTAATGTGAAGAAAATGTAAGATTAAAAAATG
ATATAAAAATAC--AATGAGTATAAGAATAGAAAATGTGAATTTGTAGTTAAAAGAATGACATTTCCAAAAAAAATGTAG
AGGGTGAACTTCATGG----------------------------------------------------------------
-------------------GTATTATGCAATCGCCCAACACATGTATTGTGAATACAAAATATAATTAAAAAA--ACTTA
TGAATAACTTGCATAAATTGATGATGTGACATGGTTGCCCGTAATTTATGATTTGCATG-----------CATGACTTCA
TGGTTGGGTGTCTAGAAAAAAAATAGGCAGTGGGTTATAG---TAGTATCTATTTAGAAATAGAAGATTCTGTGGACGGG
CCT------GGGCCTGTAGTACCCACCCGGCCCATCTACGGATCC------------ACGGAACGCAACCCTAACCACGA
ATACGAGAAG------GAGGACGAGGAGCGAACACGCTTCCTCTGCTTGGAATCGGATCTGGTGCGAGGAGGAAGAGGAA
GAGGAAGA------GGAAGATGAAGGTCCGCGCATCGGTGAAGCGGCTGTGCGGATTCTGCAAGGTGGTGAAGCGCCGGG
GGATCGTCTTCATCCACTGCACCTCCAACCAGAAGCACAAGCAGCGCCAGGGCTTCTCCACCATCGCCGCCTGCCTCCCG
CCCCCGCCGCCCG---CCTCCGCCTCCGCCGCCGCGTTCGCCGAGTAAGAAGGCTTCCCCGCCCCCCTCTCTCGCTCCAC
GCGGTACGGTTTGTCTTTTATC--AATCGTACCCGCGAAGCAGCGCGGGCT----------------------------T
GGTCTGGTCGTGTGCTCGTGATTCGTAGGACAAATTAAGGTTGCGAGTTAGAGCTAGTGATGATGGGATTGAATCTTATC
C-------TGGTCCCTAAAGAGGCGCGATTGTGAGCATGTTTGATATCCAA---GTGGTGAACAATTT------------
-------------------TGGATCCAAGCCAACAATTTATACTTACACAAGTACCGCCTCACAAACCATTTCTAGTATT
TTTCACTAGAAGAATGACTGACCTCTCTTTACAAGGCAACACTAGCCGATAAAAAATGAGCTCAGCCAATGGTTTCAGCC
TGGATGGTAAGCTAAC----------------------------------------------------------------
--------------------------------------------------------------------TTTTCCAACTTA
GCCACTTAGTGGTTAAGTTGAATTATATGGAA--------ATCTCCATTTGCGA-TGTTCACAAGTTTGTGTTGTGAAGC
AACTTACCTATTTGTCCCATTGCATATTTGCCTGTGTCTTTTGTTTAGTGATTCCAATTTTAAATTCATTTGCTCCAGTT
GGCATGGTTTCTGTTGTGTACCTGTACCCGTCCTTGAGTGATAATTTTATGCTG-----CATTTATCGTACT--TTATAT
GGTATGATGATCTTCATACTAAATTGAAATATTAACAAGGGGCAGGAGAGTAGAGCTTCTGTCAAAACGTAACAGCTTGG
CTCACCACAGGCTGCCTTTGCCCTTTGCTAACAGTTTCTTTATAGTGTGTAGAATAATACTGCA----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------TGTGCTGTTAACCGA
TTTACCTACATGTCTCATTGCATATTTTGCCTGTGGGCTTTCTTAAGTGGTTCTGATGTTAACTTCACTCGTTGCATTTA
GCATGGTTTTTGATATGTA--CCTGTGCTTGTCATTGAGTGGTATTTTCATTCTACATTTACTTAGTACTCCCTCCGTTC
GGAATTACTTGTCGTAGAAATGGATGTATCTAGACGTATTTTACTTCTAGATACATCCATTTCCGAGACAAGTAATTCCG
AACGGAGGGAGTATGTGTTATGACGATCTCCATAGTAAGTTGAAATATTAACATGGGCCAACGACGGTGGAACTTCTGTC
AAAACATAACGGTTGCTAATAGTTGATTAGTTTCTTTAGGGGTAAAAAA----AATACTGCAATACACTTCTCCTGTTGG
GTCCATGTCCTGAA---TTCTTATTGGTTAATCATTTGTTCAGTAGGACTTATCCTGTAGCCTAATTTGACACTTGATGT
TCTCATCTTTGCT-----TTGTAGGGCTTCCAAGGTGGCCCGTCAGGAGATGTCAACGAAGTTCAACTGGCCGCTGGGTC
TAGCTGCCGTGCTCAAGAATGGTGACAAATAATCAGATGATGAATACTAGCTAGTCACTGTTTTGATATCAAGTGGAGTT
TCCAGTTGAGTAATTCCTGTAA-GAAAAATAGAACATCATTGTGTATCCGATGTCATTGGTTAAACTGTTCGTTTCATGG
AATAATATTGGCATACACTATTA--CTCTCTCTTGATATGTTTTATTCATACAATGCTGCTTTTACTTAACTCTCCTGGC
CATCTTGCCGAATATGTTCCATTGTATTTTCGCTGCATTGCTAATAATACCAGGGTGTGCCACCTGTATGTTGCATCAGG
AGTCACTGAAATCTAAAGAACTTGCAGATAAGAGGACTCTGTTGTTTCTTTCTCTCTCTTCCAAATCAAGCAGTTCTGGT
TAAATTTCTGCCGCTGTTCACTTTCTGTAAAGCCGTGGTTTAGTGGCACAAACTGTAGTTCCTGACA-TATATCTAGCTT
GCTAGCCATTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGTAGTACAAAGACTC
TGAAGCATCTGGTGACAAAAACTCTTAGACTTGAGCACG-TTTCTTCATACTATTACTAATACCTCCAGATCTAGCCATG
GCTTTGAACCAACCAGGTAGCTTCAGGGCATATCTCCACCCTAACTCAAGTTAAGCCTTTGCCACAGGAAATTTAGAACT
TTTGTAATGCCTTTATCATATGAAATTTACCAAATAAATGCCCATTTTTTGTTGTCGAAGAACAAACTAGTGAAGAA
>chr5D_1
TAAGTAAATGATAAAAATTACAATCATTAAAAAAAGAATTATGCATATATGTATTATTGTGTGTGTGTGTGTGAGTGAGT
GAGTGTGTGTGTGTGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGGGCACGTGCGCGTGTGTGCG
TGTTTATTTTGGTATCCTACCATCCTCAAATATCTGGATGTATTACAATACACGATTTTTTTGTGTAGCTTGCAATTCAG
GGTAAATCATAAAATTATACGCACATATACATTACATCCTTATGTGCGTGTATATATATTTCCAGTTCTTTTTTAAACTA
AAAGGATTGGTTTTAGATTTTTT---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------TTAAAATAAAAGGACTCCATGTAGCTCGGCCTCCAAA
ACACCCAACTCTACGTTTTTTTTAAATTATCGCATAAACTAGATGCAATTTTTTAA-TAAAATAAACTACATATTAAATG
TAACCCAATTTTTTTGAGTTTGTTTATATAGATGTAACTCAAAAAGTATCATACTAAAAGAGGCACCATGCCTTGTTGCA
GGAATCTTGCTAAAAGAATTACATAGAAGTTGATAACAACAACTAGAACTAATGTGAAGAAAATGTAAGATTAAAAAATA
GAATAAAAATACCAAAAGAGTATAAAAATAGAAAATGTGAATTTGTAGTTAAAAGAATGACATTTCCAAAAAAAATGTAG
AGGGTGAACTTCATAG----------------------------------------------------------------
-------------------GTATGATGCAATCGCCCAACACATGTATTGTGAATACAAAATATAATTAAAAAATAACTTA
TGACTAACTTGCATAAATTGATGGTGTGACATGGTTGCTCGTAATTTACAATTTGCATG-----------CATGACTTCA
TGGTTGGATGTCGAG--AAAAAATAGGCAGTGGGTTATAGGAGTAGTATCTATCTAGAAATAGAAGATTCTGTGGACGGG
CCTGGGCCTGGGCCTGTAATACCCACCCGGCCC--------ATCC------------ACGGAACGAAACCCTAACCACGA
ATACGAGAACGAGGACGAGGACGAGGAGCGGACACGCTTCCTCTGCTTGGAATCGGATCTGGTGCGAGGAGGAAGAGGAA
GAGGAAGAGGAAGAGGAAGATGAAGGTCCGCGCATCGGTGAAGCGGCTGTGCGGCTTCTGCAAGGTGGTGAAGCGCCGGG
GGATCGTCTTCATCCACTGCACCTCCAACCAGAAGCACAAGCAGCGCCAGGGCTTCTCCACCATCGCCGCCTGCCTCCCA
GCCCCGCCGCCGCCCACCTCCGCCTCCGCCGCCGCGTTCGCCGAGTAAGAAGCTCTTTTTAACTCTC-------------
-------------------------------CCCGCGAAGCAGCGCGGGCTAGGTTCTAAAAGCATCCACGAGATTGGTT
GGTTTGGTCGTCTGCTCGTGATTCCTAGGACAAATTAAGGTTGCGAATTAGAGCCAGTGATGA---GATTGAATCTTGAT
C-------TGGTCCCTAAAGAGGCGTGATTGTGAGCATGTTTGATATCCAA---GTGAACAATTTTGGGACCTATCTCAT
TGGTCAGTAACCTGACATCTGGATCCAAGTGAACAATTTACACTTACACAAGTACCGCCTGACAAACCATTTCTAGTATT
TTACACTAGAAAAATGACTGACCTCCCTTTACAAGGCACCACTAGCCC---AAAAATGAGCTCGGGCAATGGTTTCAGCT
TGGATGGCATGTGATCCACCGGACTGCTTGATCACTTGCTAGGCTGCTCCTACCCTGAGTATTTTTAAGAAGCTATGGGC
ATCACTTCAATCTCCTTGGTTTGTCAAGTTGCTGTTGAAACTTTTCGAACTGATTATAGTGAAAGAGGTTTTCCAGTGTA
GCCTCTTACTGGTTAAGCTACGCCTGTTGAATTACAGGGCATCTCCATTTGCAATTGTTCACGAGTTACTGTTGTGAACC
AATATACCTACATATCTCATTGCATATTTGCCTGTGGCCTTTGCTAAGTGATTTCAATGTTAAATGCATTCTTTGCAGTT
AGCATGGTTATTCCTGTGTATCTGTACCTATCCTCGGCTGTTACTTTTATACTGCACTGCATTTATCAAACCAACTATAT
GGTATGATGATTAAGGTCCAAGGAGAGCGAAA-----------------------CTTCAGTCAAAACAGAACAGCTGGG
GTCACCACAGACTG-------CCTTTGCTAATAGTTTCTTTAGG--GTGTAGAATAATAC--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------------GCGATACGCTTCTCCTTTTGG
TTCCATGTACTGAATTCTTCTTATTGGTTAACCATATGTTCTATAGGACT-ATCCTGTTGCCTAATTTGACACTTGATGT
TCTCATCTTTGCTGTGTATTGTAGGGCTTCCAAGGTGGCCAGGCAGGAGATGTCAACGAAATTCAACTGGCCGCTGGGTC
TAGCTGCCATGTTCAAGAATGGTGACAAGTAATCAGATGATGAATACTAGCTAGTCGCTGTTTTGGTATTAAGTGGAGTT
TCCAGTTGAGGAATTCCTGTAACGAAAATTAGAATATAATCGTGTATCCGATGCCATTGGTTAAACTGTTCGTTTCATGG
AATAATATTGGCATACACTATTACTCTGTCTCGTGATATGTTTGATTCAAACAGAGCCGCTTTGACTTACCTCTCCTGGC
CAGCTTGCTGAGTATGTTCA-TCCTATTTTCGTTGGATTGCTAATAATACCAGGGTGTGCCACCTGTATGTTGCATCAAG
AGTTACTGAAACCTGAAGAACCTGCAGATAAGAGGACTGTGTTGTG----TCTCTCTCTTTCAAATCAAGAAGTTCTGGT
CAAATTTCTAGCACTGTTCACTTTCTCTAAAACCGTGGTTTAGTGGCACAAACTGTAGTTCCTGGCAGTATATCTAGCTC
GCAACAGTAACA--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------TCATACCGTTATTAATAGCTCCAGATCTAGCCATG
GCTTTGAATCAACCAGGTAGCTTCAGGGCATATCTCCACC-TAACTCATGTAATGCCTTTGCCACAGGAAATTTAGAACT
TTAATAATACCTTTGTCATGTGAAATTTACCAAATAAATGCCCATATTTTGTTGTTGAAGAACTTGCTAGTGAAGAA
>chr5B_148
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------CACGATTTTTTTTTGTAGTTTGCAATTCAG
GGTAAATCATAAAATTCTACACACATATACATTACATCCTTGTGTGCGTGTATATATATAGTTC-----TTTTAAAACTA
AATGGATTGATTTTTTATTTCATTTTTAAATAAAAGGCCTCCATGTAGCTCGGCCTCCAAAACACCCAACTCTAAGTTTT
CTAAAACTATCACATAAACTACATGTAATTTGTTTAGTAAATAAACTACATATTAAATTTAACTCATTTATTTAGTTTTT
TTTATATAGATGTAACTCTAAAAGTATCACACTAAATGATGCACCATGTGTTGTTGCAGGAATCTTGCTAAAAGAAATAC
ATAAAAGTTGATAACATCATCTAGAACTAATGTGAAGAAAATGTAAGATTAAAAAAATGAAATAAAAATACAAAGAGTAT
AAAAATAGAAAAGGACTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATTAAAATAAAAGGACTCCATGTAGCTTGGCCTCCAAA
ACACCCAACTCTATGGTTTTTTAAGATTATCGCATAAACTACATGCAATTGTTTTAGTAAAATAAACTACGTATTAAATG
TAACTCAATTTTTTTGAGTTTTTTTATATAGATGTAACTCAAAAAGTACCATACTAAATGATGCACCATGCGTTGTTGCA
TGAATCTTGCTAAAAGAAATACATTAAAGTTGATAACAACATCTAGAACTAATGTAAAGAAAATTTAAAATTAAAAAATG
AAATAAAAATAC--AAAGAGTATAAAAAAAGAAAACGTGAATTTGTAGTTAAAAGAATGACATTTCCAAAAAAAATGTAG
AGGGTGAACTTCATAGGTACTCCCTCCGTCCCAAAATATAAGAACGTTTTTTACACTAAGCTAGTGTCAAAAACGTTCTT
ATATTTCGGGACAGAGGGAGTATGATGCAATCGCCCAACACACTTATTGTAAATACAAAATATATTTAAGAAATAACTTA
TGACTAACTTGCATAAATTGATGGTGTGACATGGTTGCCATTACTTTTTTTTTTGAAGGCACATGGTTGCCATTACTTCA
TGGTTGGATGTCTAG--AAAAAATAGGCAGTGGGTTATA-------TATCTATTTAGAAACAGAAGATTCTGTGGAC---
---GGGCCTGGGCCTGTAATACCCACCCGGCCC--------ATCTACGGATCCACGGACGGAAGGAAACCCTAACCACGA
ATAGGAGGAG------GAGGACGAGGAGCGGACACG----CTCTGCTTGGAATCGGATCTGGTGCGAGGAGGAAGAGGAA
GA------------GGAAGATGAAGGTCCGCGCATCGGTGAAGCGGCTGTGCGGCTTCTGCAAGGTGGTGAAGCGGCGGG
GGATCGTCTTCATCCACTGCACCTCCAACCAGAAGCACAAGCAGCGCCAGGGCTTCTCCACCATCGCCGCCTGCCTCCCG
CCCCCGCCACCGCCGACCTCCGCCTCCGCCGCCGCGTTCGCCGAGTAAGAAGGCTTCCCC------------CGCCCCCC
GCGGTACGGTTTGTCTTTATTAATAATCGTACCCGCGAAGCAGCGCGGGCT----------------------------T
GGTCTGGTCGTGTGCTCGTGATTCCTAGGACAAATTAAGGTTGCGAATTAGAGCCAGTGATGG---GATTGAGTCTTTAT
CCTGGTCCTGGTCCCTAAAGAGGCGTGATTGTGACCGTGTTTGACATCCAAGTGGTGAACAATTTTGGGACCTGTTGT--
---TCAGTAACCTGACATCTGGATCCAAGCGAACAGTTTACACTTACACAAGTGCCGCCTGACAAACCATTTCTAGTATT
TTACACTAGAAGAATGACTGACCTCTCTTTACATGGCAACACTAGCCGATAAAAAATGTGCTCGGCCAATGGTTTCAGCT
TGGATGGTAAACTAAC----------------------------------------------------------------
--------------------------------------------------------------------TTTTCCAACTTA
GCCACTTACTGGTTAAGTTGAATTATATGAAAAAA--------TCCATTTGCAA-TGTTCACAAGTTTGTGTTGTGAACC
AACTTACCTATTTGTCCCATTGCATATTTGCCTGTGGCCTTTGTTTAGTGATTCCAATTTTAAATTCATTTGTTGCAGTT
GACATGGTTTCTGTTGTGTACCTGTACCCGTCCTTGGGTGATAATTTTATGCTG-----CATTTATCTACTTTATTATAT
GGTATGATGATCTTCATACTAAATTGAAATATCAACAAGAGACAGGAGAGTAGAGCTTCTGTCAAAACGTAACAGTTTGG
GTCACCACAGGCTGCCTTTGCCCTTTGCTTATAGTTTCTTTAGT--GTGTACTCCCTCCGCCCGCGAATAAGTGTACTTC
TACCATTTGTCCTAAGTCAAAGTTTTATAATTTTGACCCAACTTTTTAGAGAAGAGTAGTACTGTAGTAGTATATATAAC
ATCAAATTATATATTATGAATATACATTTCAAAACAAATCTAGTGATACTAATTTAGTGCCATAAATGCTGCTATTTTTT
CCTATAAAGCTGGTCAAAGTTTCAAAACTTTGACTTAGAACAAAAGCTAGATGTACACTTATTCGCGGACGGAGGGAGTA
GAATAATAGCGCAGTCTCTTCTCCTTTTGGATACATGTCCTGAATTCTTAGAATGTTCTTGAGTTTGTGCTGTGAACCAA
TTTACCTACATATCTCATTGCATATTTTGCCTGTGGGCTTTGTTAAGTGATTCTGATGTTAAATTTACTCATTGCAATTA
GCATGGTTTTTGCTATGTATACCTGTGCCTGTCCTTGAGTTGTATTTTTATTCTGTATTTACCTACTATA----------
--------------------------------------------------------------------------------
---------------TGGTATGATGATCTCCATAGTAAGTTGAAATATTAACAAGGGCCAAGGACGCTGGAACTTCTGTC
AAAACATT----------ATAGTTGATTAGTTTCTTAGGGTGTAAAATAAAATAATACTGCAATACACTTTTCCTATTGG
GTCCATGTCCTGAA---TTCTTATTGGTTAATCATTTGTTCAGTAGGACTTATCCTGTAGCCTAATTTGACACTTGATGT
TCTCATCTTTGCT-----TTGTAGGGCTTCCAAGGTGGCCCGACAGGAGATGTCAACGAAGTTCAACTGGCCGCTGGGTC
TAGCTGCCCTGCTCAAGAATGGTGACAAATAATCAGGCGATGAATACTAGCTAGTCGGTGTTTTGATATTAAGTGGAGTT
TCCAGTTGAGGAATTCTTGTAACGAAAATAGCATGCCATCATGTATCTGATAT-CATTGGTTAAACTGTTCGTTTCATGG
AATAATATTGGCATATACTCTTACTCTGTCTCTTGATACGTTCGATTCAAAGAGAACCACTTTGTCTT--CTCTACTGGC
CATCTTGCTGACTATGTGCG-TTGTATTTTTGCTGGATTGCTAATAATACCAGGGTGTGCCACCTGTATGTTGCATCAGG
AGTTAATGAAACCTAAAGAACTTGCAGATAAGAGGACTCTGTTGTTTCTT--TCTCTCTTTCAAATCAAACAGTTCTGGT
TAAATTTCTGCTGCTGATCACTTTCTGTAAAGC-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------AAGACTC
TGAAGCATCTGGTGACAAAAACTCTTAGACTTGAGCACGTTTTCTTCATACCATTACTAATAGCTCCAGATCTAGCCATG
GCTTTGAACCAACCAGGTAGCTTCAGGGCATATCTCCACCCTAACTCATCTTATGTCTTTGCCACAGGAAATTTAGAACT
TCCGTAAT---------------------------------------------------------------------
>SNPs
-----------------------------S-----S--------------------------------------------
------------------------------------------------------------------S-----S-------
----------S---------------------------------------------------------------------
----------------------------------------------S---------------------------------
--------------------------S-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------S------S-----------S---------------------------S---------------------
----------------------------------------------------------S---------------------
--------------------------------------------------------------------------------
-S--------------S--------S------------------------------------------------------
--------------S-----------------------------------------------------------------
-----------------------S--------------------------------------------------------
---S-------------------S-------------------------S------------------------------
-------S-------SS---------------------------------------------------------------
------------------S--------------SSSSSSSS------------------------S--------------
------------------------------S-------------------------------------------------
------------------------------------------------------S-------------------------
--------------------------------------------------------------------------------
-----------SS-----------------------------------------------SS-S-S-SSSSS---S--S-
------------------SS-S----------------------------------------------------------
------------------------S---------------------S-------S--------SSS-----------SSS
-------------------------S-------------------------------SSS--SSS-SS------------
------------------------------S---------S-------------------S-------------------
--S------------------------------------------------------------S---------------S
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------S--------------------S----------------------S-------------------------S-
------------------------------------S-S---------------------------------S-S-----
------------------------------------S------------------------------SS-----------
--------------------------------S------S-S--------------------------------------
S------------------------------S----------SSSS--------------SS-S----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------S----S-
-----------S-----------------------------S-------S------------S--S----S-----S---
------------S---------------S----S------S-------S-----SS------S--S--SSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS--S-----S-----------------------------S-------S----S-------------
-------SSSSSSSSSSS------------------SS--S------S---------------------------S----
--------------------------------------------------------------------------------
------------------------------------------S-------------------------------------
--------S-----------------------------------------------S------------S----------
----------S-----------------S-----S--S--S------------S--------------------------
---------------------------S---------------S-----S---SS--S-----S-----S----------
--------S--S-------SS--------------S--------------------------------------------
---S-------S------------------------------------------------S-------------------
----------------------------------------------------------------S--------------S
--S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------
---------------------------------------------------S----------S-----------------
------------------------------------------------S----S--------------------------
--S-----S-----S----S-------------------------S---------S-------SSS-----------
>forward_979
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------------------------------------A
ACACCCAACTCCACGGTTG-------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------------
>reverse_3582
--------------------------------------------------------------------------------
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-------------------------------------------------------------CGACGGTGGAACTTCTGTC
A-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>forward_3444
--------------------------------------------------------------------------------
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----------------------------------------------------------------AGTACTCCCTCCGTTC
GGAA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>reverse_4703
--------------------------------------------------------------------------------
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--------------------------------------------------------------CCTCCAGATCTAGCCATG
GC------------------------------------------------------------------------------
-----------------------------------------------------------------------------
