>input_sequence_48919
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------ATGCGGCGCC
GGCGCTCTCCTGTGGCGGCGCTGTGGCTCGCGGCGGCGTGGGCTCTGCAGCTGCTCGCGGGCGCCGGGGCGGCGAACCCG
ACGTGGTGCATCGTGCGCACCGGGGCGCCGGTGAGGACGGTGCAGGCGGCGCTGGACTACGCGTGCAGCCCCGCGGGCGG
CGCCGACTGCGCGCCCATCCAGCCCAGCGCCCTCTGCTACCTCCCCAACACCCTCGCCGCGCACGCCTCCTACGCCTTCA
ACTCCGTCTACCAGCGCTCCCACGCCGCCCCCGGCGCCTGCGACTTCGCCGGCACCGCCACCGTCACGCTCACCGACCCC
AGTCAGTACACG-------------TTGATTCTAT-CTTTGTTCCTTTCTTCTCTGTTACGCACTGTTTAATTAGTATAT
TATTTTGGACGAACTCGCATT---GTTTGATTATGCTTATGCCCTTGACATTATGTTTAAAATTTGCCGTGTATATATGG
TTTCCCTCAATC--------------------------------------------------------------------
----------------------GCAAGCTTCCTATCGGTCAGTGTAATCCCTTCCATGCACGCGTCTCTTTTGCTTTTGC
CGCCTTCTTTTTTTGCTTGACCGGTGTCGCTTTTGC--TTTTTTGCTTCGTTATTCGTTAGTAGTATCACTACCACTGCA
CAAATAGCTGCCTG--------CTTTTGTTCTTGGAACCTTTGGGATTATGCCTTCATTAGGAGATTTTTTTTTTCACTC
AAGAAA------------------ATGCATTGAACGAAGAATATATGTGTCGCTAGGCCGATTTCTTAATTTTGATGCGC
CATTTTTTGGTAACTTTAGAATGAATGCATTATCCAAAAAAAGACTC--CTAAAATTCCCGATCAAGTGATGGCGTACGT
TGAGATATGAAAAAGTTA-TTCACTGTGTTCATGCATTGCCCAGTTTTCGTACG--------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------GTTTG
TGGACCCTACTTTCAGTTTCAGGACTACCCCCATCAGAGTATTTCTAGTTGTAC--------ATAGGCAAGTGATGCGTT
TACACACTTCTACTAATAATCCAGTTTTCTCTTA----CGTTTTTCAGGTTATGGATCATGCACCTTCCCTGCATCTCCA
GGGTACGTACGTGCATCACATTGTACTTGCTTCCATTTATTGTACAACTTCACAAAGAATACATGAGGAATTTCTAATAA
CTCATTAATAAACTTGGTTTACGTCTTCTGCAATCTCATGTATCTAGCTAGAAGAGCATGATATTTGCTAGATGAAATTT
GAATTACATGCCACCTCGAAT-AACATGAGATATTTATACTTAGCTCAGTCTGTGGCTACTGTGACTGTGTTGTGCTGAA
TTCATTCTATCTGTTGTTACCACAATTTTGCACCT---TAAACTTTCAAATTTATCATGTTGGGTTCC------------
------------------------------------------------------------TACATGCAGCGCAGCTGGGT
CACCCGGTTCAGCCACGTCCGCATCTCGACCGCCGCCGGGCAACCGCAAGCCTGACCTTGGATCAGACGACGACGATTCC
GACACCGATGAGGCTCACGTTGCCACCGCCAATGCACCCTTGATGTCTCTTGCCCTCTCCTGTTTCGTGTACCTGCACTT
GCGCTGGTGGTGA-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------
>chr5A_1_TraesCS5A01G456400
CGATGTGATCTTCTGAAGTTCTCTAAACTGGTGCTATAGTCCTAGGAGATCTCCTTTATTATGTCCTCGATCTGTCTCTG
TCTTGTTTCTTCAGTTGAACTTAAGTGGTATGCTCCTAGCTGCCGAGTATCACAACTTGATAGTCTGGTTTATTTTGCGT
GCGATCATCCTGGAGAACCCGGCTTGTGGGATTTCTCATGATTATGATGATAGGGGCCGTTTAGTGTTTGCGTCTGAAAC
CTGGTCCGCTCCCGGCTCGAGTAATCTGCACTTTAGAGGAGATCTCATCCTCGACAGTGTGCATCGTAGGATTTGCTAAT
GTAATGTGAATTGGCAATAGCCTGGTGTCGGTCGCAAGACTTAGTGATTTCTAATAATGGAAATCGGAGAGAAAACTCTC
TTTATCAAAAAAAAAGTGCCAATAAATTCATGGTTTAGCTTCAGTTAAGGGGGCACATTCCGATGCCATCTTGCTTTGCT
CTCTATTTTATACATTTATTTTAGTGCGCTAATTTGTGAGGTTAGTTTAATCATTAATTACCTCTAGTAAGCTACTTCAT
CCGTCTCATAATATAAGAACGTTTTTGACAATTAGTGTAGTGTCAAAAATGTTGTTATATTATGGAACAGAGGGAGTAGT
ACTTTCTCCCTTTTTCATCATCGGCC--AGCCTGATTGCTACTACC------TTTTTACCGGTTGATCTTCTTCCTCCTG
GATGGTCTTTGCTTTTCCTAGCCCCCCGCTCCTTCGCTATCTCCTTTCTCCGGTCGTAATTAGATTAGACACTCCGACCC
AAAGGAAAAGCAAAGAGAAGAAAAGAAAGCAGTTCTCCATGGAGATGGAGAAGGAGATCCTCCTCCTGGCTTCCGCTCCC
GCTCCGGCTCCCACCATCTTTCTT---TCTCATATTCCCTCCCCACCACCGCGCACATATTCCCACCACCTTTGCTCCTT
CTTGCTGCCTGAGCCTCTCGCCTCGCCCCGCACCCTCCCGCAGACCAC-------------------TACATGCGGCGCC
GGCGCTCTCCTGTGGCGGCGCTGTGGCTCGCGGCGGCGTGGGCTCTGCAGCTGCTCGCGGGCGCCGGGGCGGCGAACCCG
ACGTGGTGCATCGTGCGCACCGGGGCGCCGGTGAGGACGGTGCAGGCGGCGCTGGACTACGCGTGCAGCCCCGCGGGCGG
CGCCGACTGCGCGCCCATCCAGCCCAGCGCCCTCTGCTACCTCCCCAACACCCTCGCCGCGCACGCCTCCTACGCCTTCA
ACTCCGTCTACCAGCGCTCCCACGCCGCCCCCGGCGCCTGCGACTTCGCCGGCACCGCCACCGTCACGCTCACCGACCCC
AGTCAGTACACG-------------TTGATTCTAT-CTTTGTTCCTTTCTTCTCTGTTACGCACTGTTTAATTAGTATAT
TATTTTGGACGAACTCGCATT---GTTTGATTATGCTTATGCCCTTGACATTATGTTTAAAATTTGCCGTGTATATATGG
TTTCCCTCAATC--------------------------------------------------------------------
----------------------GCAAGCTTCCTATCGGTCAGTGTAATCCCTTCCATGCACGCGTCTCTTTTGCTTTTGC
CGCCTTCTTTTTTTGCTTGACCGGTGTCGCTTTTGC--TTTTTTGCTTCGTTATTCGTTAGTAGTATCACTACCACTGCA
CAAATAGCTGCCTG--------CTTTTGTTCTTGGAACCTTTGGGATTATGCCTTCATTAGGAGATTTTTTTTTTCACTC
AAGAAA------------------ATGCATTGAACGAAGAATATATGTGTCGCTAGGCCGATTTCTTAATTTTGATGCGC
CATTTTTTGGTAACTTTAGAATGAATGCATTATCCAAAAAAAGACTC--CTAAAATTCCCGATCAAGTGATGGCGTACGT
TGAGATATGAAAAAGTTA-TTCACTGTGTTCATGCATTGCCCAGTTTTCGTACG--------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------GTTTG
TGGACCCTACTTTCAGTTTCAGGACTACCCCCATCAGAGTATTTCTAGTTGTAC--------ATAGGCAAGTGATGCGTT
TACACACTTCTACTAATAATCCAGTTTTCTCTTA----CGTTTTTCAGGTTATGGATCATGCACCTTCCCTGCATCTCCA
GGGTACGTACGTGCATCACATTGTACTTGCTTCCATTTATTGTACAACTTCACAAAGAATACATGAGGAATTTCTAATAA
CTCATTAATAAACTTGGTTTACGTCTTCTGCAATCTCATGTATCTAGCTAGAAGAGCATGATATTTGCTAGATGAAATTT
GAATTACATGCCACCTCGAAT-AACATGAGATATTTATACTTAGCTCAGTCTGTGGCTACTGTGACTGTGTTGTGCTGAA
TTCATTCTATCTGTTGTTACCACAATTTTGCACCT---TAAACTTTCAAATTTATCATGTTGGGTTCC------------
------------------------------------------------------------TACATGCAGCGCAGCTGGGT
CACCCGGTTCAGCCACGTCCGCATCTCGACCGCCGCCGGGCAACCGCAAGCCTGACCTTGGATCAGACGACGACGATTCC
GACACCGATGAGGCTCACGTTGCCACCGCCAATGCACCCTTGATGTCTCTTGCCCTCTCCTGTTTCGTGTACCTGCACTT
GCGCTGGTGGTGACACGGTATGGATATTTGCGTAGGTAGGCTCTGTGCGTAGAGCACTGCCAC----------GATGTAA
GAAGCCACCACAGTTTTGTTTTTGGGAGGGAATTTGTAGTGATCGCTCGTAGCATTTGTAACCTGCCCGTGCAAGCAAAA
GGGGGCTAGAGTGGCAGACATTTGGATTCGTCTGATTCATTTGGATGTTCTTTCGTGTCATGAGCTTGACGTCTAACATT
TTTCCATCTCTGAAATCTTGTCTCAATGTAGGTGACGAATGCAAAATTATTACCCAAGTTCACGAAAATTTAACATTTTT
TGTCAAAACAATACGAGTCATTTGAGAATATATGATCGGTAAGAGCAACTCTAGCAAGTCTCCATGTCACTGATCTCCAT
CAGTTATATGGAACACGCTTCATATGGATTTGAAGGCTGACGGGCTTCTGCGCAAACACACACTGAGTCGCCACACGGTT
GCCACCATAATTTTCTTTTTCATTTATTCTTTTTTTTTTGGTCGTTCGCTACAAATTTGTAGGGGCAATTTGAGCTCAGT
TTAGCATTTGTAACCTGCCCTTTCAAGCTAAAGGGGGACAGAGTGGCATACATTTGAATTGGCCTGATTCGTTTGGATGT
TCCTTCATGT-CCCAGCTTGACGTTTACTTCCTTTGTCACAAAATACTTGAAATTCTAAGTTTGTCTGAGGTCAAGCATT
TTTATGTT------------------------------------------------TGACCAACTATATTATAGAAAAAA
TAGATCAACATCTACGACGCCACCACCAACGTCGCTCGAATGCACAAACGGTACCTTGTGTCTTATTAATCATGCGCTAG
TAGATCGAGTGCACAAGATACTCGTATGCCATGTTGGAAATATGAGCAATTTATCAAATGATTTTATTAACAGAAATATT
AGATAAAATATGACTAATATAGTAGAGATAAAACAAATCATGCGTTCTGACAGAGAGAAGGTAAATAGCTTCTGCATATA
TGAACCATATCCTATCATATCTAAAGCAGACA
>chr5B_414
AAGTCT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------AATGAATTCATGGTTTAGCTTCAGTTAAGGGGGTACATCGTGATGCCATCTTGCTTTGCT
CTCTATTTTATACATTTATTTTAGTGCACTAATTTGATAGGTCAGTTTAGTCGTTAATTACTTATGGTAATC--------
----------------------------------------------------------------------------TAGC
ACTTTCTCCATTTTTTATCATCAACCAGAGCCTGATTGCTACTCCTACCTTTTTATTACCAGTTGATCTTCTTCCTCCTC
GATGGTCTTTCCTTTTCCTAGCCCCCCTCTCCTTCACTATCTCCTTTCTCCGGTCGTAATTAGATTAGACACTCC--CCC
AAAGGAAAAGCAAAGAAAAGAAAAGAAAGCAGTTCTCCATGGAAACGGAGAAGGAGATCCTCCTCCTCCTG---GCTCCC
GCTCCCGCTCCCACCATCTTTCTTCTTTCTCATATTCCCTCCCCACCACCTCGCACATATTCCCACCGCCTTTACTCCTT
GCCGTC--------------CCTCCTCCCGCACCCTCCGCGGCCACGCTTCCCGCAGACTACCTACGTACATGCGGCGCC
GGCGCTCTCCTCTGGCGGCGCTGTGGCTCGCCGCGGCGTGGGCTCTGCAGCTGCTCGCAGGCGCCGGGGCCGCGAACCCG
ACGTGGTGCATCGTGCGCACCGGAGCGCCGGTGAAGACGGTGCAGGCGGCGCTGGACTACGCGTGCAGCCCCGCGGGCGG
CGCCGACTGCGCGCCCATCCAGGCCAGCGCCCTCTGCTACCTCCCCAACACCCTCGCCGCGCACGCCTCCTACGCCTTCA
ACTCCGTCTACCAGCGCTCCCACGCCGCGCCCGGCGCCTGCGACTTCGCCGGCACCGCCACCGTCACGCTCACCGACCCC
AGTCAGTACAGACAATTCCTCACGTTTGATTCTATCCTTTGTTCCTCCCTTCTCGGTCACGCATGCGTTG----------
---------CGCACTCGATTG---CTTCAATTATGCCCTGG---------TTATATTTTAAATCTGCATTGTACTAGTAG
TTTATTTCAAATAAATAG---TAAATTGCATTGAAGTATATTTCAAAAAATATATTTGCATTGTACCGTAGTATGGTGCT
TCTTTTTCCTCGGTTGCAACTTGCAAGCTTCCTATGAGTGC----AATCCCTTCCATGCACGCGTCTCTTTTGCTTTTGC
CGCCTTCTTTGTTTGCTTGACCGGCGTCGCTTTTGC--TTTTTTTGC------TTCGTTAGTAGTATCACTACCACTGCA
CTAATAGGTAATAGCCGGCGTACTTTTCTTTTTGGAACCTTTGGGATTATGCTTTCATTGGAAGAATTTTTCTCTCAAGA
ATAG-------TCTTTGCGCCTCGATGCATTGAACGAAGAATATATGTGTG--TAGGTCGATTTCTGAAATGTGATGCGC
CATTTTCCGGTAACTTCAGCATGAATGTATTATCCCCCCAAAAAAACCTCTAAACCTCCCGATTAATTGATGGTGTACGT
TGAGATATGCAAAAGTTA-TTCACTGTGTTCATGCATTGCCCAGTTTTCGTCTTGTTTGTGAACCCTATCTTCAGGA---
----CTCCCACCTTCAGAGTATTTCTATCTGTACCTAGGCATGTTGAGTAATTCAGTTATTATCCAAAAATAATAATAAA
ATTCCTGATACGATGATGGTGTTGACATGTGCAAAAGTTATTCACTGTATTCACGCATTGCCCATTTTTCGTCCAGTTTG
TGAACCCTACTTTCAGTTTCAGGACTACCTCCTTCAGAGTATTTCTAGTTGTACATGTACGCCTAGGCAAGTGAAGCGTT
TATACACTTCTATTAATAATCCAGTTTTCTCTTAATTACGTTTTTCAGGTTATGGATCATGCACCTTCCCTGCATCTCCA
GG----GTACGTGCATCACATTGTACTCGCTTCCATT---TGTACAACTTCACTAAGAATACATGAGGAATTTCTAATAA
TTCATTAACAAACTTCGTTTACGTCTTCTGCAATCCCATGTATCTAGCTAGAAGAGCATGATATTTGCTAGATGAAATTC
GAATCATATAACACGTCGTAT-ACAT---GAGATGTTTACTTAGCTAAATCTGTGGCTACTC--ACTCTGTTGTGCCGAA
TTCATTCCATCTGCTGTTACGGGAATTTTGCACCT-----AACTTCCAAATTTTTATTTTACCCTGAAAAGAGACAAAAA
ATTGTAAAAGATACTCAAAAGAACCCGGTAAGGGAATGATGATCATGCTGACTTCCTATATATATGCAGCGCAGCCGGAT
CACCCGGTTCAGCCACGTCTACATCTCGACCACCGCCGGGCAACCGCAAGCCTGACCTTGGATCAGATGACGACGATCCT
GACACCGATGAGGCTCATGTTGCCACCGCCAATGCACCCTTCATGTCTCTTGCCCTGTCATGTTTCGTGTACCTGCACCT
GCGCTGGTGGTGACACGGTATGGATATTTGCGTAGTTAGGCTCTGTACGTAGAGCATTGCGTCGCAGCGTCATGATGTAA
GAAGCCACCACAGTTTTGTTTTTGGGAGGGAATTCGTAGTGATCGCTTGTAGCATTTGTAACCTGCCCGTTCAAGCAAAA
-AGGGCTAGAGTGGCACACATTTGGATTCGTCTGATTCATTTGGATGTTCTTTCGTGTCATGAGCTTGACGTCTAACATT
TTCCCATCTCTGAAATCTTGTCTCAATGTAGGTGACGAATGCAAAATTATTACCAAAGTTTACAAAAAATTAACATTTT-
TGTCAAAACAATACAGGTCATTTGAGAATATATGATCCGTAAGAGCAACTCTAGCAAGTCGTCATGTCACTTATCTCCAT
ATGTTATATGGAGCGCCCTTCATATGGATTTGAAGGCTGCCGGGCCTGTATGGAAACACACACAGAGTCGCCACATGGCT
GCCTCCATAATTTTC-TTTTCATTTATTCTTTTTTTTGTCGTT--------CAAATTTGTAGGGGCAATTTGAGCTCAAT
TTAGCATTTGTAA-CTGCCCGTTCAAGCAACAAGGGGCTAGAGTGGCATACATTTGAATTGGCCTGATTCGTTTGGATGT
TCCTTCATGCCCCGAGCTTGACGTGTACTTCCTTTGCTGCAAAATACTTGAAATTCTGAGTTTGTCTGAAGTCAACCATT
TTTATGTCCCCCCCCCCCACCCCCACCCCAAGAATTGAGCCCAAGCTCCGCCACTGTGATCAACTATATTATAGAAAAAA
TAGATCAACGTCTACAATGCCATCATCCAAGTCGCTCGAATGCACAAACGGTACCTTGTGTCTTA---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------
>chr5D_749
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------CTCTCTCCTTTCTCCTGTCGTAATTAGATAAGACACT-----CC
AAAGGAAAAGCAAAGAAAAGAAAAGAAAGCAGTTCTCCATGGAGATGGAGAAGGAGATCCTCCTCCTGGCTTCCGCTCCC
GCTCCCGCTCCCACCATCTTTCTTCTTTCTCATATTCCCTCCCCACCACCTCGCACATATTCCCACCACCTTTACTCCTT
GCCGTC--------------TCTCCTCCCGCACCCTCCACGGCCACGCTTCCCGCAGACTACCTACGTACATGCGGCGCC
GGCGCTCTCCTCTGGCGGCGCTGTGGCTCGCGGCGGCGTGGGCTCTGCAGCTGCTCGCGGGCGCCGGGGCCGCGAACCCG
ACGTGGTGCATCGTGCGCACCGGGGCGCCGGTGAGGACGGTGCAGGCGGCGCTGGACTACGCGTGCAGCCCCGCGGGCGG
CGCCGACTGCGCGCCCATCCAGCCCAGCGCCCTCTGCTACCTCCCCAACACCCTCGCCGCGCACGCCTCCTACGCCTTCA
ACTCCGTCTACCAGCGCTCCCACGCCGCCCCCGGCGCCTGCGACTTCGCCGGCACCGCCACCGTCACGCTCACCGACCCC
AGTCAGTACACG-------------TTGATTCTAT-CTTTGTTCCTCCCTTCTCTGTCACGCATGCGTTG----------
---------CGCACTCGATCGGTTCTTCAATTATGCCCTGG---------TTATCTTTTAAATCTGCATCGTAC---TAG
TTTATTTCAAACAAACAGCAGTAAATTGCATTGAAGTATATTTCAAAAAATATATTTGCATTGTACTAGTATGC--TGCT
TCTTTTTCCTCGGTTGCAACTTGCAAGCTTCCTATCAGTGC----AATCCCTTCCATGCACGCGTCTCTTTTGCTTTTGC
CGCCTTCTTTTTTTGCTTGACCAGCGTCGCTTTTGCCTTTTTTTTGT------TTCGTTAGTAGTATCACTACCACTGCA
CCAATAGGTAATAGCCGGCGTACTTTTCTTTTTGGAACCTTTGGGATTATGCTTTCATTAGGAGAATTTTTCTCTCAAGA
ACACGCAATAATCTTTGCGCCTCCATGCATTGAACGAAGAATACATGTGTAGGTCGTTCTATGAT----TTTTGATGGGC
CATGTTTTGGTAACTTCACCATGAATGTGTTATCCAAAACAAGACTT--CTAAAATTCATTATGTGATGGT-------GT
TGAGATATGCAAAAGTTACTTCACTGTGTTCATGCATTGCCCAGTTTTCGTCTTGTTTGTGAACCCTATCTTCAGGAATC
AGGACTACCGCCTTCAGAGTATTTCTGTACC------GGCATGTGGAGTAATTCATCCATTTTTTTTAC--------AAA
ATTCCTGATTAACTGACGGTGTTGAGACATGCAAAAGTTATTCATTGTGTTCACGCATTGCCAG-TTTTCATCTTGTCTG
TGAACCCTACTTC------CAGGGCTACCTCTTTCAGAGTATTTCTAGTTGTAC--------CTAGGCAAGTGAAGTGTT
TATACCCTTCTATTAATAATCCAGTTTTGTC----TTACGTTTTTCAGGTTATGGATCATGCACCTTCCCTGCATCTCCA
GG----GTACGTGCATCACATTGTACTTGCTTCCATT---TGTAGAACTTCACGAAGAATACATGAGGAATTTCTAATAA
TTCATTAACACGTCGAATAACATGAACAAATGCTGTCTTAGT-------------GCATGATATTTGCTAGATGAAATTT
GAACTATATAACACGTCGAATGACAT---AAGATGTTTACTTAGCTCAACTTGTGGCTACTGTGACTGTGTTGTGCTGAA
TTTATTTTATCTGTTGTTACCACAGTTTTGCACCTTAATAAACTTTCAAATTTATCATGTTGGGTTCC------------
------------------------------------------------------------TATATGCAGCGCAGCTGGGT
CACCCGGTTCAGCCACGTCTACATCTCGACCACCGCCGGGCAACCGCAAGCCTGACCTTGGATCAGACGACGACGATTCC
GATGCCGATGAGGCTCACGTTGCCACCGCCAATGCACCCTTGATGTCTCTTGCCCTGTCATGTTTCGTGTACCTGCACCT
GCGTTGGTGGTGACACGGTATGGA---TTGCGTAGTTAGGCTCTGTGCGTAGAGCATTGTCAC----------GATGTAA
GAAGCCACCACAGTTTTGTTTTTGGGAGGGAATTTGTAGTGATCGCTCGTAGCATTTGTAACCTGCCCGTTCAAGCAAAA
-GGGGCTAGAGTGGCAGACATTTGGATTCGTCTGATTCATTTGGATGTTCTTTCGTGTCATGAGCTT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------
>SNPs
SSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS---S-----------------------------S----SSS-------------------
---------------------------S--------SS----S------S--S--------S-S-S----S-SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S
---------S-----S------SS-------------------S-S--------S-----S------------------S
----------S----------------S-------S---------------------------------------SS---
----------------S---------------------------------------------------------------
-----S--------------------------------------------S----------------------S------
SSS-SSSSSSSSSSSSSSSS----SS------------SSSSSSS-S---------------------------------
-----------S----------------------------------------------------------S---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------SS---------S-----SSSS--SSSSSSSSSSS
SSSSSSSSS--S-----SS-S---S--SS-------SSSS-SSSSSSSSS----S---S----S---SS----SSSS-S-
---SSS----S---------------------------------------------------------------------
------------------------------------S--SSSSSS-----------------------------------
------------------------S-------------------SS-SSSSSS---------------------------
-S-----S-SSSS--------------S--S---------------------S------------S-----S-S---SSS
-SSSSS--------------------------------------------S-S----S--------S-------------
----------------S--S-------S-----------------------------------S--S------S------
---------S-----------------------------------------SSS--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--S--------------------------S--S-----------------------------S-----------S-----
--S---------S-------------------------------------------------------------------
--SSSS-------------------------------SSS-------------S--------------------------
S-------S------S----------------------------------------------------------------
------S--SS---S--------SSSSSS--S--S-S-----------S-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------S-----------------
-------------------SS----------S------------------------------------------------
--------------------------------------------------------S--S------------------S-
-----------------------------------S--------------------S-----------------------
----------------------------------------------------------------------S---------
S-------------------------------------------------------------------------------
--S---------------------------------------------------S-----S--S----S----------S
--------------SS---------------------S----------------------SS---------S--------
SS----------S-S-S----------------------S-----S-S-SS-S----------S-----------S--S-
---S-----------S---------------------S-S--SSSSSSSSS---------------------------S-
-------------S------S-------S-S-S----SS-----------------------------------------
---------S---S----------S-----------SSS------------------S-----------S-----S----
-------S---------------------------------------------------S--------------------
---------S-----S-S----S--S-S-S-----------------------------------SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_181
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-CGATCATCCTGGAGAACCCG-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------
>reverse_1524
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---CCCTCAATCGCAAGCTTCCT---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------
>forward_272
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------CGGCTCGAGTAATCTGCACT------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------
>reverse_1644
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------GTAATCCCTTCCATGCACGC-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------
>forward_1640
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------TCGCAAGCTTCCTATCGGTC----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------
>reverse_3411
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------CGCAAACACACACTGAGTCG----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------
