>input_sequence_48917
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----------ATGCCATTACGAGAGGCTGCTCGCGCGGCTTGTGTGTCACACACATTTCTGCAATCATGGAGATGCTGTC
GCAA-CCTTACCTTAAGTAAGGAAACACTAGGTTTGAATGGAAATGGTATTGATAAAGATGAAATGGCAAGAGATCTCAT
CAGT------------------------AAAGTTGACGGTATTCTTAAGAATCACTCGGGTGTTGGCATGAAGAAACTAG
AGCTTAATCTCTACTGTTGCCGCAAGGTTGATCACTGTTATCTCAATAGTTGGCTTCGCATTGCTTTTAGAGCAGGGATT
GAAGAGCTCTCCATGTTGCTGTCTCTTA-------TCAGT------GAGGCAGAGTACAACTTCCCATGCTCTCTTTTAT
TCAGTGGGAGTGAAAAATCAATTCGGTATCTTAAGCTCTCCAGCTGTGTCTTTCGTCCCACAGCTGAGCTTGATTGCTGG
AGAAGGTTGAAGGAGTTGTGGCTGACTAATGTGCTGATTACGGACGATGAGCTAGAGTGCCTTCTTTCCAATTCTTCCAT
GTTGGAGTTACT-GTGGCTCTTTAGATGCAATGAGATAGTTTGTGTGAAGATACCTTGTCAGCTCCAGCGGCTCAGCTTC
CTGCGAGCGGGTCAATGCAGAAAGCTCCAGGAGATAGAGAGCAACGCTCAAAATATCTCGAGTTTTGACATCGGTGGCAG
TAACTTGGTAAAGATTTCATTTGGAGGCGCATTGCGAGTAAAGAACATGAGGATAACGTGTTCATA------TCAGCCCA
ACGTTATCTGGTACACTCGGACCAAGCCTATGCCATCTGTACTGAATGTTGAAACGCTTCACA-TATCCTCGTGTAATGA
GGTACATTATAAACGTTGTGATGATCATAGGGTAGCTATTTGCATATAACAGC---TTTCATAC---GTGATATGATTAA
TCCGAGACATCTTTATGCAGATGATCAGTACACCAACTCTACCTAGCAAATTCCTGCACCTCAAATACTTGCACATTACT
CTAAATGCAAACGAAGCTATTTCACCGGCCTATGATTACCTTTCTCTGGTTTCTTTTCTTGTAGCTTCTCCTTGCTTGGA
GACTTTCATCTTTGTAGTAAGTTACTGATCACCTTGCAAGCATACCTAGTGCCTATGGCAAAACAACTGAAACGGTCATC
TCGGCTTTCTATTTTAGGTACAGCAAACTGACATGAAGCATGATTCGATTGTCGGGGATATCTCGCATCTGAGGCAGCTG
CCAGAACACCGCCATGACAACCTAAAGAGCGTAACAATCGTCGGCTTCTGCTCTGCTAAGAGCATGGTCGAATTAACACT
TCATATCATTAAGAACACATCGTCGCTTCAGTGTCTCACATTGGACACTAGTTTCGGTTCTTGTGGCTGTTCGGTCGATA
AACCTGGCGGTTGCAACCCTATGAGGAGGGATATAATCGAGGAAGCCCATAGAGCACTTTTGGCTATCAGAACACACGTT
GAGGGCATAATCCCCTCTAGAGTTATGTTAAATGTTTCAGGGCCTTGCAGTCGGTGCCATGTTGTTGAACGTGACTAA--
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>chr5A_1_TraesCS5A01G281300
TGTATTGACAGATGGATTGATTGCTCCATTCTGTAAAAAAAAGTGCTAATTGCGCCAGCAAGATGATTATTCACAAAGTG
GTGCTCGTCCAAGACCAGGTCTAGACCTTCCAGAGGTATACTGTTTCTGATAACTGACGAATTAAATTGTTGAGTAAAAT
ACCATTGTGTG------TTTTACTTTTACCTG---------GTACTGGTGAAAATTTTACTAGCTAAATAAACCTGAAGA
ATAGCTATGTTTTTACTACTTTATGCTGTGTTTGGCTCGTACCAGTCCACCACCACAGTACTTTCTTCATTGGCATATGA
TTACCGCCTGCTACAACCAAACTTAGAATCATGCTAGGTGTGCCTATTCGGAGTATAAGATTATGATGACAAGTTCTGAC
AATCCAAGCATCTGT----GGAATGCTTTATTACACTGCAAC----AATGTTGAGACCTTGCGCTG------TAGTAGTA
ACCAAATTTTCTGGAAAAAAAGAACCACATATGATGGAAGACTGTTCTCTTATCTGGCTTTGGCAGTCTACGTCTGTGGC
TCTAAATGTTCATATGTACACCCTCTGTTCCTAAATATAAGACGTTTTGGCAGTTTAAACGTCTTATATTTAGGAACTGA
GGTAGTACTATTTATACCCTGTGCACAATATACATGTTTTTGTTTAGATGCCATACTGACTTAATTATTGCATATAATTG
TATCACATTGTATGGTTTAACGCATCACCGATCACTGCATGGGTGCTGAATGTTGACTTGCACAAATGCAAATAAATAAT
TCTTGTTCATTTTCATATGCATAATTTAAGTAAGAATGCAATTGTACCAATATCCA-----------TACTAAGTAATTA
ACATTGCAGGAAAATCTTCCTCAAAAGCTCA---TTTGTAGCCCTCAATCCACTCGCTGCGATTACT---TAGTAT--TA
ATATTAAAGTTTCTTTTTATATTCTGATACATTTCTCCTTTCTGTGCTTCTGCAT--TCTCAGGACATATATCAACATAT
ACATGCCCTAATGCCATTACGAGAGGCTGCTCGCGCGGCTTGTGTGTCACACACATTTCTGCAATCATGGAGATGCTGTC
GCAA-CCTTACCTTAAGTAAGGAAACACTAGGTTTGAATGGAAATGGTATTGATAAAGATGAAATGGCAAGAGATCTCAT
CAGT------------------------AAAGTTGACGGTATTCTTAAGAATCACTCGGGTGTTGGCATGAAGAAACTAG
AGCTTAATCTCTACTGTTGCCGCAAGGTTGATCACTGTTATCTCAATAGTTGGCTTCGCATTGCTTTTAGAGCAGGGATT
GAAGAGCTCTCCATGTTGCTGTCTCTTA-------TCAGT------GAGGCAGAGTACAACTTCCCATGCTCTCTTTTAT
TCAGTGGGAGTGAAAAATCAATTCGGTATCTTAAGCTCTCCAGCTGTGTCTTTCGTCCCACAGCTGAGCTTGATTGCTGG
AGAAGGTTGAAGGAGTTGTGGCTGACTAATGTGCTGATTACGGACGATGAGCTAGAGTGCCTTCTTTCCAATTCTTCCAT
GTTGGAGTTACT-GTGGCTCTTTAGATGCAATGAGATAGTTTGTGTGAAGATACCTTGTCAGCTCCAGCGGCTCAGCTTC
CTGCGAGCGGGTCAATGCAGAAAGCTCCAGGAGATAGAGAGCAACGCTCAAAATATCTCGAGTTTTGACATCGGTGGCAG
TAACTTGGTAAAGATTTCATTTGGAGGCGCATTGCGAGTAAAGAACATGAGGATAACGTGTTCATA------TCAGCCCA
ACGTTATCTGGTACACTCGGACCAAGCCTATGCCATCTGTACTGAATGTTGAAACGCTTCACA-TATCCTCGTGTAATGA
GGTACATTATAAACGTTGTGATGATCATAGGGTAGCTATTTGCATATAACAGC---TTTCATAC---GTGATATGATTAA
TCCGAGACATCTTTATGCAGATGATCAGTACACCAACTCTACCTAGCAAATTCCTGCACCTCAAATACTTGCACATTACT
CTAAATGCAAACGAAGCTATTTCACCGGCCTATGATTACCTTTCTCTGGTTTCTTTTCTTGTAGCTTCTCCTTGCTTGGA
GACTTTCATCTTTGTAGTAAGTTACTGATCACCTTGCAAGCATACCTAGTGCCTATGGCAAAACAACTGAAACGGTCATC
TCGGCTTTCTATTTTAGGTACAGCAAACTGACATGAAGCATGATTCGATTGTCGGGGATATCTCGCATCTGAGGCAGCTG
CCAGAACACCGCCATGACAACCTAAAGAGCGTAACAATCGTCGGCTTCTGCTCTGCTAAGAGCATGGTCGAATTAACACT
TCATATCATTAAGAACACATCGTCGCTTCAGTGTCTCACATTGGACACTAGTTTCGGTTCTTGTGGCTGTTCGGTCGATA
AACCTGGCGGTTGCAACCCTATGAGGAGGGATATAATCGAGGAAGCCCATAGAGCACTTTTGGCTATCAGAACACACGTT
GAGGGCATAATCCCCTCTAGAGTTATGTTAAATGTTTCAGGGCCTTGCAGTCGGTGCCATGTTGTTGAACGTGACTAATC
ATGTAAAATTATAATGTTTGTGATGAGTTGTTTATTAAATAAATAGCGCTATTTATTTAGTACAAGCAAGGAGAAATG--
-------------------------CATGTCATTTCAGGAACTGCAAAAACTAAAATAGTAGTAAGAATATGATTATATC
TATATCATAAAAACAAAACACTTGTTCTGTCCACAAATCTGAGAGAAGCTAAAACTTGAGGCATCAACTAAACACAAAAA
ACGATTGTTGTAAAAACTAGAACTAAACATCTGCAACTCCTCGATCCCTGATACAGTAGTCTTTGTGAATAGTATTTTCT
CAGAAAACAAATGACCTTGTGCATAGCCTTATTGTTTCTTCTTTTTAAAATAAAAAAAGATCAGTACAGGAAATTGATTA
TTACTCCGTACAACGTAACTCCTTCCGCATTGGATATATTGCACTTTGTTTAAGAAACAAATTTGGTAGACTGATGGATC
TCCAACAGTTTTTTCCACGTGATAGATAGATCATCGCAGTAATTAATCCATGTGGTAAGCATTGCGTTGAGTTAATAAAG
TTATGCCTTAGGCATGATGACCTTCTAAAGGGAAGATCTGACCTCACAACATAC--------------------------
--------------------------------------------------------------------------AGTACA
TGCTATGACATTGCATAGAGATGTGAAGATCACCCATCTGGTAAGCATTGCGCTGAGTTAATAAA---------------
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----------------------------GTTTGACCTTCTAAAAGGAAGATCTGACCTCACAACATACATGCTATGACAT
TGCACAGACAGATATAAAGTTCTCACTCCATACACGTACATGGTTGGCGTCGAAGAATCAGTACACGATTGGGGTCGAAG
AATCAGTTGGCGTCGGCGCCGCCGGCTGGAGGGGACACCGGCTCGGGATCAACCGGGAAGTCTTCCTCGAATTCAGGGAA
GTCGTCGTAGCGCGCCCGCGTCCCGGGCAACTTCTGCCAAAGCGGCGTCGCCGACGCGGACCAGAAACTGGGCGAACCCG
CGAAAGTAGTCGAGGGTAGGGTCGCCCTTGACGAGCTGCAGGAGCTTT
>chr5D_1
TGTATTGACAGATGGATTGATTGCTTCATTCTGTAAAAAAAAGTGCTCATTGCGCCAGCAAGATGATTATTCGCAAAGTG
GTGCTCGTCCAAGACCGGGTCTAGACCTTCCAGAGGTATACAGTTTCTGATAACTGACGAATTAAATTGTTGAGCAAAAT
ACCATTGTGTG------TTT-ACTTGGATTATTATAGGGCAGTGCTGGTGAGAATTGTACTAGCTGAATGAACCTGAAGT
ATGACTATG---TTAGTACTTTATGCTGCGTTTGGCTCGTGCCACTCCACCACCACAATACTTTCTTCATTGGCAT--GA
TTA----CTGCTACAACCAAACTTAGAATCAGGCTAGGTATGCATATTCGGAGTATAAGATTATGATGACAAGTTCTGAC
AATCCGAGCATCTGT----GGAATGCTTTATTACACTGCCACAATTAATGTTGAGACCTTGCGCTG------TAGTAGTA
ACCAAATTTCCTGGAAAAAAAGAACCACATATGATGGAAGACTGTTCTCTTATCTGGCTTTGGCAGTCTATGTCTGTGGC
TCTAAATGTTCATATGTACACCCTCTGTTCCTAAATATAAGATGTTTTGGCAGTTTAAACGTCTTATATTTAGGAACCGA
GGTAGTACTATTTATACCCTGTGCACAATATACATGTTTTTGTTTAGTTGCCATACTGACTTGATTATCGCATATAATTG
TATCACATTGTATGGTTTAACGCATCACCGATCACTGCATGGGTGCTGAATGTTGACTTGCACAAATGCAAATAAATAAT
TCTTGTTCATTTTCATATGCATAATTTAAGTAAGAATGCAATTGTACCAATATCCA-----------TACTAAGTAATTA
ACATTGCAGGAAAATCTTCCTCAAAAGCTCA---TTTGTAGCCCTCAATCCACTCGCTGCAATTACATTCTAGTAT--TA
ATATTAAATTTTCTTTTTATATTCTGATACCTTTCTCCTTTCTGTGCTTCTGCAT--TCTCAGGACATATATCGACATAT
ACATGCCCTAATGCCATTACGAGAGGCTGCTCGCGCGGCTTGTGTGTCACACACATTTCTGCAATCATGGAGATGCTGTC
GCAA-CCTTACCTTAAGTAAGGAAACACTAGGTTTGAATGGAAATGGTATTGATAAAGATGAAATGGCAAGAGATCTCAT
CAGT------------------------AAAGTTGACGGTATTCTTAAGAATCACTCGGGTGTTGGCATGAAGAAACTAG
AGCTTAATCTCTACTGTTGCCGCAAGGTTGATCACTGTTATCTCAATAGTTGGCTTCCCATTGCTTTCAGAGCAGGGATT
GAAGAGCTCACCATGTTGCTGTCTCTTA-------TCAGT------GAGGCAGAATACAACTTCCCATGCTCTCTTTTAT
TCAGTGGGAGTGAAAAATCAATTCGGTATCTTAAGCTCTCCAGCTGTGTCTTTCGTCCCACAGCTGAGCTTGATTGCTGG
AGAAGGTTGAAGGAGTTGTGGCTGACTAATGTGCTGATTACGGACGATGAGCTAGAGTGCCTTCTTTCCGATTCTTCCAT
GTTGGAGTTACT-GTGGCTCTTTAGATGCAATGAGATAGTTCGTGTGAAGATACCTTGTCAGCTCCAGCGGCTCAGCTTC
CTGCGAGCGGGTCAATGCAGAAAGCTCCAGGAGATAGAGAGCAACGCTCCAAATATCTCGACTTTTGACATCGGTGGCAG
TAACTTGGTAAAGATTTCATTTGGAGGCGCATTGCAAGTAAAGAACATGACGATAATGTGTTCATA------TCAGCCCA
ACGTTATCTGGTACACTCGGACCAAGCTTATGCCATCTGTACTGAATGTTGAAACGCTTCACA-TATCCTCGTGTAATGA
GGTACATTCTAAACGTTGTGATGATCATAGGGTAGCTATTTGCATATAACAGC---TTTCATAC---GTGATATGATTAA
TCCGAGACATCTTTATGCAGATGATCAGTACACCAACACTACCTAGCAAATTCCTGCACCTCAAATACTTGCACATTACT
CTAAATGGAAACGAGGCTATTTCACCGGCCTATGATTATCTTTCTCTGGTTTCTTTTCTTGTAGCTTCTCCTTGCTTGGA
GACTTTCATCTTTGTAGTAAGTTACTGATCACCTTGCAAGCATACCTAGTGCCTATGGCAGTACAACTGAAACGGTCATC
TTGACTTTCTATTGTAGGTACAGCAAACTGACATGAAGCATGATTCGATTGTCGGGGATATCTCGCATCTGAGGCAGCTG
CCAGAACACTGCCATGACAACCTAAAGAGCGTAACGATGGTCGGCTTCTGCTCTGCTAAGAGCATGGTCGAATTAACACT
TCATATCATTAAGAACACATCGTCGCTTCAGTGTCTCACATTGGACACTAGTTTCGGTTCTTATGGCTGTTCGGTCGATA
AACCTGGTGGTTGCAACCCTATGAGGAGGGATATAATCAAGGAAGCCCATAGAGCACTTTTGGCTATCAGAACACACGTT
GAGGGCATAATCCCCTCTAGAGTTATGTTAAATGTTTCAGGGCCTTGCAGTCGGTGCCATGTTGTTGAACGTGACTAATC
ATGTAAAATTATAGAGTTTGTGATGAGTTGTTTATTAAATAAATAGCGCTATTTATTTAGTACAAGCAAGGAGAAATACA
ATACGGGCCAGGAATGCAATTGAAACATGTCATTTCAGGAACTGCAAAAACTAAAATAGTAGTAAGAATATGATTATATC
TATATCATAAAAACAAAACACTTGTTCTGCCCACAAATCTGAGAGAAGCTAAAACTTGAGGCATCAACTAAACACAAAAA
ACGATTGTTGTAAAAACTAGAACTAAACATCTGCAACTCCTCGATCCCTGATACAGTAGTCTTTGTGAATAGTATTTTCT
CAGAAAACAAATGACCTTGTGCATAGCCTTATTGTTTCTTCTTTTTAAAATAAAAAAAGATCAGTACAGGAAATTGATTA
TTACTCCGTACAACGTAACTCCTTCCGCATTGGATATATTGCGCTTTGTTTAAGAAACAAATTTGGTACACTGATGGATC
TCCAACAGTTTTTTCCACGTGATAGATAGA--------------------------------------------------
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>chr5B_1
TGTAT-GACAGATGGATTGATTGCTTCATTCTGTAAAAAGAAGTGCTCACTGCGCCAGCAAGATGATTATTCGCAAAGTG
CTGCTGGACTAAGACCGGGTCTCGACCTTCCAGAGGTATACAGTTTCTGATAACTGACGAATTAAATTGTTGAGTAAAAT
ACCATTGCGTG------TTTTACCTGGATTATTATAGGGAAGTACTGGTGAGAATTTTACTAGCTGAGTAAACCTGAAGA
AAAGTTGTGTTTGTACTACTTAATGCTGTGTTTGGCTCGTACCAGTCCACCACCACAATACTTTCTTCATTGGCATATGA
TTA----CTGCTACAACCAAACTTAGAATCATGCTAGGTATGCATATTCGGAGTATAAGATTATGATGACAAGTTCTGAC
AATCCGAGCATCTGTCTGCGGAATGCTTTATTACACTGCCAC----AATGTTGAGACCTTGCGCTGTAGTACTAGTAGTA
ACCAAATTTTCTGG-AAAAAAGAACCACATATGATGGAAGACTGTTCTCTTATCTGGCTTTGGCAGTCTATGTTTGTTGC
ACTAAATTTTCATGTGTAC-------------------------------------------------------------
---AGTACTATTTATACCCAGTGAACAATTT-CATGTTTTTGTTTGGCTGCCATACTGACTTGATTATCAGATATTATTG
TATTACATTGTATGGTATA--GCATCACCGATCACCGCATGGGTGCTGAATGTTGACTTGCACAAATGCAAATAAATAAT
TCTTGTTCACTGCCATATGCATAATCTAAGTAAGAATGCAATTGTACCGATACTAATTAATCAATAA-------TAAGTA
ACATTGCAGGAAAATCTTCCTCAAAAAGCTCATTTTTGTAGCCCTTGATCCACTCACTAGAATTACATTCTAGTA--TTA
ATATTAATGTTTCT-TTTATATTCTGATATCTTTCTCCCGTCTGTGCTTCTGCAT--TC--AGGACATATATCGACATAT
ACATGCCCTAATGCCATTACGAGACGCTGCTCGTGCGGCTTGTGTGTCGCACACATTTCTGCAATCATGGAGACGCTATC
GCAA-CCTTACCTTAAGTAAGGAAACACTAGGTTTGAATGTAAATGGTATTGATAAAGATGAAATGGCAAGAGATCTCAT
CAGCAAAGTTGACGGTGATCTCATCAGCAAAGTTGACGGTATTCTTAAGAATCACTCGGGTGTTGGCATGAAGAAACTAG
AGCTTAATCTCTACTGTTGCCGCAAGGTTGATCACTGTTATCTCAATAGTTGGCTTCGCATTGCTTTCAGAGCAGGGATT
GAAGAGCTCACCATGTTGCTGTCTCTTAC-------CAGT------GAGGCAAAATACAACTTCCCATGCTCTCTTTTAT
TCAGTGGGAGTGAAAAATCAATTCGGCATCTTAAGCTCTCCAGCTGTGTCTTTCGTCCCATAGCTGAGCTTGATTGCTGG
AGAAGGTTGAAAGAGTTGCTGCTGACTAATGTGCTGATTACGAGCGATGAGCTAGAGTGCCTTCTTTCCACTTCTTCCAT
GTTGGAGTTACT-GTGGCTCTTTAGATGCAAAGAGATAGTTCGTGTGAAGATACCTTGTCAGCTCCAGCGGCTCAGCTTC
CTGCGAGTGGGTGAATGCAGAAAGCTCCAGGAGATAGAGAGCAACGCTCCAAATATCTCGACTTTTGACATCAGTGGCAG
TAACTTGGTAAGGATTTCATTTGGAGGCGCATTGCAAGTAAAGAACATGAGG---ATATGTTCATA------TCAGCCCA
ACTTTATCTGGTACACTCGGACCAAGCTTATGCCATCTGTACCGAATGTTGAAACGCCTTCGCGTATCCTCGTATAATGA
GGTATATTCTAAACGTTGTGATGATCATGGGGTAGCTATTTGCATACAACAGC---TTTCTTAC---GTGATATGATTAA
TCCGAGACATCTTTATGCAGATGATCAGTACACCAACACTACCTAGCAAATTCATTCACCTCAAATACTTGCACATTACT
CTAATTGGACACGAGGCTATTTCACCGGCCTATGATTACCTTTCTCTGGTTTCTTTTCTTGTAGCTTCTCCTTGCTTGGA
GACTTTTATCTTTGTAGTAAGTTACTGATCATCTTGCAAGCATACCTAGTACCTATGGCAGAACAACTGAA-CGATCATC
TTAAACTTCTATTGTAGGTACATCAGACTGACATGAAGCATGATTAGATTGTTGGGGATATCTCACATTTGAGGCAGCTG
CCAGAACACTGCCATGACAACCTAAAGAGCGTAACGATCGTCGGCTTCTGCTCTGCTAAGAGCATGTTCGAATTAACACT
TCATATCATTAAGAACACATCATCGCTTCAGTGTCTCACATTGGACACTAGTTTCGGTTCTTATGGCTGTTCAGCCGATA
AACCTGGCGGTTGCAACCCTATGGGGAGGGATATAATCAAGGAAGCCCATAGAGCATTTTTGGCTATCAGAACACACGTT
GAGGGCATAATCCCCTCTAGAGTTAAGTTAAATGTTTCAGGGCCTTGCAGTCGGTGCCATGCTGTTGAAC----------
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>chr5A_6
-----TGACAGATGGATTGATTTCTTCATTCTGTAAAAAGAAGTGCTCATCGCGCCAGCAAGATGAGTATTCGCAAAGTG
GTGCTGGACTACGACCGGGTCTCGACCTTCCAGAGGTATGCAGTTTCTGGTAACTGACGAATTAAATTGTTGAGTAAAAT
ACCATTGTGAGTTTTACTTTTACCTGGATTATTATAGGGAAGTACTGGTGAGAATTTTACTAGCTGAATAAACCTGAAGA
ATAGCCATGTTTGTACTA---TATGCTGTGTTTGGTTCGTACCAGTCCACCACCACAATACTTTCTTCATTGGCAT--GA
TTA----CTGCTACAACCAAACTTAGAATCATGCTAGATATGCATATTCGGAGTATAAGATTATGATGACAAGTTCTGAT
GATCCGAGCATCTGT----GGAATGCTTTATTACACTGCCAC----AATGTTGAGACCTTGCTCTG------TAGTAGTA
ACCAAATTTTCTGG-AAAAAAGAACCACATATGATGGAAGACTGTTCTCTGATCTGGCTTTGGCAGTTTATGTATGTGGC
TCTAAATGTTCATATGTACACCCTCTGTTCCTAAATATAAGACGTTTTGGCAGTTTAAACGTCTTATATTTAGGAACCGA
GGTAGTACTATTTATACCCTGTGCACAATATACATGTTTTTGTTTAGTTGCCATACTGACATGATTGTCGCATATAATTG
TATCACATTGTATGGTTTGACGCATCACCGATCGCCCCATGGGTGCTGAATGTTGACTTGCA-AAATGCAAATAAATAAT
-CTTGTTCACTGCCATATGCATAATTTAAGTAAGAATGCAATTGTACCTATACTAGCTAATCAATACTACTAAGTAATTA
ACAATGCAGGAAAATCTTCCTCAAAAGCTCA---TATGTAGCCCTCAATCCACTCGCTGCAATTACATTATAGTATTTTA
ATATTAAAGTTTCTTTTTATATTCTGATACCTTTCTCCTGTCTGTGCTTCTGCATTCTC--AGGACATATATCGACATAT
ACATGCCCTAATGCCATTACGAGATGCTGCTCGTGCGGCTTGTGTGTCGCACACATTTCTGCAATCATGGAGATGCTGTC
GCAACCCTTACCTTAAGTAAGGAAACACTAGGTTTGAATGGAAAAGGTATTGCTAAAGATGAAATGGCAAGAGATCTCAT
CATT------------------------AAAGTTGATGGTATTCTTAAGAATCACTCGGGTGTTGGCATGAAGAAACTAG
AGCTTAATCTCCACTGTTGCAGCAAGGTTGATCGCTGTTATCTCAATAGTTGGCTTCGCATTGCTTTCAGAGTAGGGATT
GAAGAGCTCACCATGTTGTTGTGTCCTGTGACCTGTCAGT------GAGGCAGAATACAACTTCCCGTGCTCTCTTTTAT
TCAGTGGGAGTAAAAAATCAATACGGTATCTTGAGCTCTCCAGCTGTGTCTTTCGTCCCACAGCTGAGCTTGATTGCTG-
------------------------------------ATCACGGGCGATGAGGTAGAGTGCCTTCTTTCCAATTCTTCCAT
GCTGGAGTTACT-GTGGCTCTTTAGATGCAATGAGATTGTTCGTGTGAAGATACCTTGTCAGCTCCAGCGGCTCAGCTTC
CTGCGAGCGGGTCAATGCAGAAAGCTCCAGGAGATAGAGAGCAACGCTCCAAATATCTCGACTTTTGACATCAGTGGCAG
TAACTTGGTAAAGATTTCATTTGGAGGCGCATTGCAAGTAAAAAACATGAGGATAATGTGTTCATA------TCAGCCAA
ACATTATCTGGTACACTCGGATCAGGCTCATGCCATCTGTAATGAATGTTGAAACGCTTTGAA-TATCCTCGTATAATGA
GGTATATTCTAAACGTTGTGATGATCATAGGGTAGTTATTTGCATATAACAGC---TTTCATAC---GTGATATGATTAA
TCCGAGACATCTTTATGCAGATGATTAGTACACCAACACTATGTAGCAAATTCCTGTACCTCAAATACTTGCACATTACT
CTAATTGGAAACGAGGCTATTTCACCGGCCTATGATTACCTTTCTCTGGTTTCTTTTCTTGTAGCTTTTCCTTACTTGGA
GACTTCCATCTTTAAAGTAAGTTACTAATCACCTTGCAAGCATACCTAGTGCCTATGACAGAACAAGTGAAATGGTCATC
TTGACTTTCTACTGTAGGTATAGCAGACTGACATGAAGCATGATTTGATTGTCGGGGATATCTCGCATCTGAGGCAGCTG
CCAGGACACTAGCATGACAACCTAAAGAGCGTAACGATCGTTGGCTTCTGCTCCGCCAAGAGCTTGGTCGAATTAACACT
TCA-----------------------------------------------------------------------------
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>chr6B_271
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---------------------------------------------TCCACCACCATAATACTTTCTTCATTGGCAT--GA
TTA----CTGCTACAACCAAACTTAGAATCATGCTAGGTATGCATATTCGGAGTATAAGATTATGATGACAAGTTCTGAA
AATCTGAGCATCTGT----GGAATTCTTTATTACGCTGCCAC----AGTGTTGAGACCTTGCGCTG------TAGTAGTA
ACCAAACTTTCTGT-GAAAAAGAGCCACATATGATGGAAGACTGTTCTCTTATCTGGCATTGGCAGTCTATGTCTGTGGC
TCTAAATGTTCATATGTACATCCTCTGTTGCTAAATATAAGACGTTTTGGCAGTTTAAATGTCTTATATTTAGGAACTGA
GGTAGTACTATTTATACCCTATGCACAATATACATGTTTTTGTTTAGTTGCCATACTGACTTGATTATCACATATGGTTG
TATCATATTGTATGGTTTAACACATCACCGGTCACTGCATGGGTGCTGAATATTGACTTTCCCAAATGCAAATAAATAAT
TGTTCTTCATTTTCATATGCATAATTTAAGTAAGAATGCAATTGTACTGATACTAGCTAATCCATACTAT---GTAATTA
GCATTGCAGGAAAATCTTCCTCAAAAGCTCA---TTTGTAGCCCTCAATCAACTCGCTGCAATT----------------
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>chr5A_1140
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----------------------------------------------------------------------GAGATCTCAT
CAGT------------------------GAAGTTGACAATATTCTGAAAAATCACTCGGGCGTTGGCTTGAAGGAACTAA
ACATTGAACTTTCTAGCTGTGACAAGGTTGATTCTTGTTATATCAGTAGTTGGCTTCGTATTGCTGTTACAGCAGGAATC
GAAGAACTCAGCCTTTTTCTGCCTCATA-------TTCCTGAG---GAAGAAGAAAACTATTTCCCATGCTCACCTTTAC
TTAATGGGAGTGAAAAATCAATTCGGTATCTTGACATAGGCATCTCTGCTTTTCGTCCCACAGCTGGGCTTGGTCATTGG
AGAAGCTTGACAAGGTTATATCTGAGTAGTGTGCGGGTTGCTGACGATGAGCTAGAGGGCCTTCTTTACAGTTGTGATGC
ATTGGAGCATTTTGGGAGTCCTGAATTGCCCTGAGATAGTTTGCCTGAAGATACCTTGTCTGCTGCAGCGGCTTAGGCTC
CTGACAGTGTCTTTATGCAAAAATCTGCAAGTGATAGATTGCAATGCTTCAAATATCTCCATTTTTCACTTCTCTGGTAG
---CTTAGTATCAATTTTCTTCGAAAATACATTGCAAGTAAAGAATGTTGAAATGGATTGTTTAGAATTTGGTCAGTCCA
ACATTGTCTTGCATGCTCGGACTAAGCTTCTGTCCTATGCGCCAAATGTTGAAACACTTGCCA-TATCCTCACCTAATGA
GGTATATTCTGAAAGTTTAGATAAGTATAGACTAGCTATTTGCATATTATATC---TGACATACCTAGTAATATAATTAA
TCTT-GATATCTTTATGCAGATGATCAGTACACCAATGCTACCTAGCAAATTCCTTTGCCTCAAGTACTTGCATATTTCT
CTAATTGGAGATGAAGCTATTTCACCAGCTTATGATTACCTTTCTCTGGCTTCTTTTCTTGAAGCTTCTCCTTGCCTGGA
GACATTCATCTTGGAAGTAAGTTACTT-GAACCTTGCTAGCATACCTAGTGC--ATTGTGAACCTGCTGATGCGAGCATC
TTGGCTTT-CTATGTAGGTGCGGCAGCCTTAAATGAAGCATGATTCAGTTGTCGAGGATTCCTCACACCTAAGGTGGCCA
CCACAGCAGCGTCACAACAACCTAAAGAGTGTGACAATCATCGGCTTCTGTTCCGCAAAGAGCTTGGTCGAGTTGACA--
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>chr5D_1140
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----------------------------------------------------------------------GAGATCACAT
CAGC------------------------AAAGTTGACCATATTCTGCAAAATCACTCAGGCGTTGGCATGAAGAAACTAA
GGATTGAACTTTTTGACTGTGACAAGGTTGATTCTTGTTATATCAGTAGCTGGCTTCGTATTGCTGTTACAGCAGGAATT
GAAGAACTCACCCTTTATCTGCCCGCTA-------CCC--GAGGACGAAGCATACTACAGTTTCCCATACTCGCTTTTAT
TTAATGGGAGCGAAAACTCGATTCGGTATCTTGACATAGGCCTCTGTGCCTTTCGTCCAACGGCTGGGCTTGGTCGCTGG
AGAAGCTTGGCAATTTTATCTCTGGGTAATGTGCTGATTGCTGACGATGAGCTAGAGGGCCTTCTTTACAATTGTGCTGC
ATTGGAGCATTT-GGCACTCCTGAATTGCCCGGAGATAGTTTGCCTGAAGATACCTTGTCTGCTGCGGCGGCTTAGGGTC
CTGAGAGTGTCTGTATGCAGAAATATGCAAGTGATAGACAGCAATGCTCCAAATATCTCCATTTTTCACTTCTCTGGTAG
---TTTAGTATCGATTTCATTCGGAAGTGCATTGCAAGTAAAGAATGTACACATGGAGTGTTTAGAATTTGGTCAGTCCA
ACATTGTCTTGCATGCTCGGACCAAGCTTCTGTCCTATGCACCAAATGTTGAAACGCTTGTCA-TATCCTCGCCTAATGA
GGTATATTCTGAAAGTTTAGATGAGTATAGACTTGCTATTTGCATATAATAGC---TGACATACCTAGTAA-ACAATTAA
TCTG-GATATCTTTATGCAGATGATCAGTACACCAACGCTATCTCGCAGATTCCTCCACCTCAAGTACTTGCATATTTCT
CTAATTGGAAATGAAGCTATTTCACCAGATTATGATTACCTTTCTCTGGTTTCTTTTCTTGAAGCTTCTCCTCGCCTGGA
GACTTTCATCTTGGAAGTAGGTTACTC-TCATCTTGCAAGCATACCTAGTGTCTATTGTGGAACTGCTGATGTGAGAATC
TTGACTTTTCTATGTAGGTACGTCAGCCTTGCATGGAGCATGAGTCAGTTCTTTGGAATGCCTCGCAACTGAGGCGACTA
CCACAACAGCGCCACACCAGCCTAAAGAGTGTGACAATAGTGGGCTTCAGCTCCGCAAAGAGCTTGGTCAAGTTGACATG
CCACATTGTGGAGAACGCGACATCGCTCGAGCGCCTCACCTTGGACACTAGT----------------------------
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>chr5B_1140
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----------------------------------------------------------------------GAGATCACAT
CAGC------------------------AAAATTGACCATATTCTGCAAAATCACTCCGGCGTTGGCATGAAGAAACTAA
GGATTGAACTTTTTGACTGCGACAAGGTTGATTCCTGTTATATCAATAGCTGGCTTCGTATTGCTGTTACAGCAGGAATT
GAAGAGCTCACTCTTTATCTGCCCGCTA-------CCGCTGAGGACGAAGCATACTACAGTTTCCCATGCTCGCTTTTAT
TTAATGGGAGTGAAAACTCGATTCGGTATCTTGACATAGGCATCTGTGCCTTTCGTCCCACGGCTGGGCTTGGTCGCTGG
AGAAGCTTGGCAATTTTATTTCTGAGTAATGTGTTGATTGCTGACGATGAGCTAGAGGGCCTTCTTTACAATTGTGCTGC
ATTGGAGCATTT-GGGACTCCTGAATTGCCCGGAGATAGTTTGCCTGAAGATACCTTGTCTGCTGCGGCGGCTTAGGGTC
CTGAGAGTGTCTATATGCAGAAATCTGCAAGTGATAGACAGCAATGCTCCAAATATCTCCAGTTTTCAGTTCTCTGGTAG
---CTTAGTATCGATTTCATTCGGAAGTGCATTGCAAGTAAAGAATGTACACATGGAGTGTTTAGAATTTGGTCAGTCCA
ACATTGTCTTGCATGCTCGGACCAAGCTTCTGTCCTATGCACCAAATGTTGAAACACTTGTCA-TATCCTCGCCTAATGA
GGTATATTCTGAAAGTTTAGATGAGTACAGACTTGCTTTTTGCATATAATAGC---TGACACACCTAGTAA-ATAATTAA
TCTG-TATATCTTTGTGCAGATGATCAGTACACCAACGCTATCTCGCAAATTCCTCCACCTCGAGTACTTGCATATTTCT
CTAATTGGAAATGAAGCTATTTCACCAGATTATGATTACCTTTCTCTGGTTTCTTTTCTTGAAGCTTCTCCTCGCCTGGA
GACTTTCATCTTGGAAGTAGGTTACTC-TCATCTTGCAAGCATACCTAGTGTCTATTGTAGAACTGCTGATGTGAGAATC
TTGACTTTTCTATGTAGGTACGTCAGCCTTCCATGGAGCATGAGTCAGTTATTCGGAATGCCTCGCAACTGAGGCGACTA
CCACAACAGCGCCACACCAGCCTAAAGAGTGTGACAATAGTGGGCTTCAGCTCCGCAAAGAGCTTGGTCGAGTTGACATG
CCACATTGTGGAGAACGCGACATCGCTCGAGCGCCTCACCTTGGACACTAGT----------------------------
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>chr5B_1140
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----------------------------------------------------------------------GAGATCTCAT
CAGC------------------------AAAGTTGACAATATTCTTAAAAATCACTCGGGCATTGGCATGAAGAAACTAA
GGCTTGAACTTTATG---GTAACAAGGTCGATTCCTTTTATGTTGATAGGTGGATTCATATTGCTGTTACAGCACGAGTT
GAAGAACTCGCCATTGTTATGCCGCATA-------TTCCTGGG---GAAGAAGAATACAATTTCCCATGCTCACTTTTAT
TTAATGGGGGTGAAAACTCAATTCGGTATCTTTACATTGCCATGTGTGCCTTTCGTCCCACGGCTGGGCTTGGTTGCTGG
AGAAAATTGACAAGGTTATTTCTAAGTAATGTATGGATTGCTGATGATGAGCTAGAGGGCCTTCTTTCCAATTGTACTGC
AATTCAACATTT-GGAACTCAAGAATTGCAGTGAGATAGTTTGCCTGAAGATACCTT---TGCTGGAGTGCCTTACGTTC
CTGAGAGTGTCTCTATGCATAAATCTGCAATTTATAGAGAGCGATGCTCCAAACCTCTCCACCTTTTCCCTGTTTGGTGG
---CTTAGTATCAATTCTATTTGGAAGTGAT------GTAAAGAATAAAGAAGTGTCGTGCTTAAAATTCGGCCCGCCCA
ACATTGTCCGGTTTGCTCGGACCGAGCTTCTGTCCGGTGCGCCAGATGTTGAAAGACTTGTCA-TAACCTCGCCTAATGA
GGTATATTCTGAAAGTTTAGATGAGTATAGACTAGCTGTTTGCATATACTAACAGTTTTCATGCCTTGTCATATAACTAA
TCTGAGGTGTGTTTATGCAGATGGAAAGTACACCAATGCTATCTAGCAAATTTCTCCACCTCAAGTACTTGCATATTTCT
CTAATCGGAAAACAAGCTATTTCACCAGCTTATGATTACCTTTCTCTGGTTTCTTTTCTTGAAGCTTCTCCTTGCCTGGA
GACTTTCATCTTTGAGGTAAGTTATCTCATC-------------------------------------------------
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>chr5D_3019
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---------------------------AGATCATCGCAGTAATTAATCCATATGGTAAGCATTACGTTGAGTTAATAAAG
TTATGCCTTAGGCATGATGACCTTCTAAAGGGAAGATCTGACCTCACAACATACTCCCTTCGTTCGGAATTACTTGTCAC
AAAAATGGATGTATCTACAACTAAAATACATCTAGATATATTCATTTCTTGAACGAGTAATTCCGAACGGAGGGAGTACA
TGCTATGACATTGCATAGAGATGTAAAGATCACCCATCTGGTAAGCATTGCGCTGAGTTAATAAAGTTTGACCTTCTAAA
AGGAAGATCTGACCTCACAACATAGAACATACATGCTATGATATTGCATAGAGATCGAGATGTAAAGATCACCCATCTGG
TAAGCATGCATTGCGCTGAGTTAATAAAGTTTGACCTTCTAAAAGGAAGATCTGACCTCACAACATACATGCTATGACAT
TGCACAGAAAGATATAAAGTTCTCACTCCATACACGTACATGGTTGGCGTCGAAGAATCAGT------------------
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------------------------------------------------
>SNPs
-------------------------S---------------------S------------------------S-------
----------------S------------------------S--------------------------------------
-------------------------SS-SSSS-------------------S-------------S--------------
---------------------------------------------------------S----------------------
---SSSS--------------------------------S---S------------------------------------
-----S---------------------------------S----------------------------------------
----------------------------------------------------------------------S---------
--------------------------------------------------------------------------------
-----------------------------------------------S--------------S-----S-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------S-----S-------------
------------------------------S------------------------------------------S------
--------------------------------------------------------------------------------
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---------S--------------------------------------------S-------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------S------------------------------
-----------------------------------S--------------------------------------------
---------------------------S----------------------------------------------------
--------S-----------------------------------------------------------------------
-------------------------------------S------------------------------------------
-------S------------------------------------------------------------------------
--------------------------------------------------------------------------------
-S-----------S------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------S-----------------
--------------------------------------S-----------------------------------------
--------------------------------------------------------------------------------
-------------SS--------------------------------------------------------------S--
--------------------------------------------------------------------------------
-----------------------------S--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------S-------------------------S-----------
---------------------------------------------------S-----------S----------------
--------------------------------------------------------------------------------
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------------------------S-------------------------------------------------------
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--------S-----------------------------------------------------SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_298
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--------------------------------------GTACCAGTCCACCACCACAG----------------------
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>reverse_2088
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-------CAAACGAAGCTATTTCACCGGC---------------------------------------------------
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------------------------------------------------
>forward_947
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-----------------------------------------------ATCCACTCGCTGCGATTACT-------------
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>reverse_2519
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--------------------------------------GAGGAAGCCCATAGAGCACT----------------------
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------------------------------------------------
>forward_1868
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---------GGTACACTCGGACCAAGCC----------------------------------------------------
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------------------------------------------------
>reverse_3835
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------AACCCG
CGAAAGTAGTCGAG----------------------------------
