>input_sequence_48907
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-------------------------------------------------------------------------------A
TGGGTGAAGAGAAGCAGGAAATTGAGAAAACATTTCATGGGTATACCATCAAGAAGAGGAATAATAGCTTGGTCACCATT
GATAGAGTTTGGCAAATGGCAACCGACAACGACATCCTTTTGGCCCGTTGCCCGTGGCTTCGAGATTTATGCCTTTCATT
TGCTTTATTCAAGCTGCTTAAACATCAGTTCGCAAAGTGTCACGTCACCGTATTCGGCTCTATCAACGCATTCAATTTTG
TCCTAAATGTACTGGTTAACAAGGGAAATCCGGACACGGTATTCAGAGTCATTGCAGATGAGGTATCTTTTGTGCTTGAT
TATTATTATTCATCTCTCCCAACTTCAAGCTTTGGACGACTGCTGCCAGTTCTTAACATCATTGTCTCCCTCTCAATTAT
AATTTGGTGCTTGCTTGTCATGCCAAGGATGTCAATGTTTTTCATACGTCCACTTTCACACAGTCAGATATGGTGCTTCA
CACCTTGCAAGTTACCGAAGGACATAGAAGCCATCAGGTGGAATATGGATAATCACATGTTATACTTCGGCAACTTGGTT
CTAAGCTTCTTGCCCACATTTTTGCTAATTGTAGCGGTTATATTTGTTGAGGCATGGCAGATCATATCCTACTTGTGCTC
CAACTGGTTCAAGTTAACCCTGTTTAGTAGCTATGTGACCCATGTCTCTTGGCAACAATCTCCTTGCATGCGGAGATTGT
TTGGTCTTGTTCTCAAGTTCAAGATTAAGTTCATGCAGAATT---GGACTGATCAAATGGGTCAAATATCACTAGTAGCA
CACTCACAACCAGAAAAATGTGTCTTGAGCCAACCGTTCTTTTACTTCTCTAGCCCAAGGCCGAGGGTGCGGCGGATCAA
TATACCATCAGAGGTGAAAGCCTCAATTATTGACACACTGAAAAGTAGTAAAGGTTGCTTGAGCAAAGGCACCGCTGCCC
TCCTGGACAATGGGATAGGCAATCATGTTCTCTGGGCATGCGAAGAACAAGACATATCCCATATTATCCTTGTTTGGCAC
ATAGCCACCGACATCTTCAAGGCCGGGCATGGAGCTTCAACCGATTGCTCAGCCGACAAGAAGACCGCAATGCATATGTC
ACAATATTGCGTCTACATGATGGCATCCACTCCCGAACTACTGCCACCAGACAAGGGATGGTCCAAGAAATTATACAAGA
TTGTGAGCGAAGATATCAAGCATACTTTCGCCGGTGGGAGTGTGTCGGTGGAATATGACATCATGGTGCAACTCCTTGGT
GAGGAATCCAGGCATGAGGTAGTGAAGAGAGGAGCAAGGCTGGGAAAGCAGCTGGTGGAGTTGATTCCAGATGAGGAGAC
GGGGTGGCACATATTGGCTTGCTTCTGGTCTGAGTTGATCTTGTATGTTGCTCCCTCTCATAACGTCAACGCACATAAGA
AGGCACGTGCCCATGGTACCGAGCTGGTGACGCTCATATGGGCCTTGTTGAGGCACGCCGGGGTCATTGACAGGCCCGAC
ACCCAAGTTGTCCCTTAG--------------------------------------------------------------
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>chr3B_1_TraesCS3B01G611200
GTATTAGTTTAGTAGTACGGAGAGAGCGATGGTGAATATAAACAAGTCTAGCTGGGAGTAGGTGCAGGAACATTGTGGCC
TTACTCCAATCCTCATCGTTTTGCAACAGAGGACCAGACAGGAGATCCTCAAAGTCCCAACAGTCACTTGGTGCTCGTAA
GTCTTACATTGTTCACATAATTAGTCTTGGATGTTTATGTGCATTTTGTGATGGCTCATTATACTCCTGTCATGTTTG-T
GTGGTCTTTTAATTTGCCTAA---CTTATATTTGTGTATTTATACATAGTTATGCTAACCACTGCATGCTTCAACATGTA
AATCAGGCGAGGGGATGGCTAATGATACAGAAGAATGCTCTCGTATTGCAGTAACATATTTTATCAAGGGGGTAAATGCA
CAGCTGTGGCGCTCCAATGCACTCATAGCTGCCAACGCCATTCTTGTCCTGATCATGGTGGCAATCAGTGCCTCCGGACG
GCACTATCATCAGGTCGGAGTGACCCGCTTCCTCTTCCGGGGAGCCACAACACTCTACCTTCCCATCATCTCCTATGTCA
CGTCCTCCATGGGCAAGTACTACACAGAAGGCTTGGACGTGCAATGCTCTGGCCAGACAAACATAGTTATGCTCCTAATT
TGGACGGTCCTTGTCCAAATTGTTGGAACCAATACAAGTGCAACCATCGTTGTTGATGGGAAAGACCGTCAAAACCATGG
CCCCTCAATCGAGTTACTCGTTCGCACAATCTGGACATCATATCTTGTATTCTACTATTCACGTCT---TTATTTGATCT
TGTTACCTCGCACCAGTGAGCAAAAAT---------------------TTTGGAACTTCCTCATTGTCCTCTGTGTTCTT
AGTTTGTTCAAAGTTACACTCAAATTCTATGCATTTCAGAAGGCAAGAAGGTCTTTCGCTCTTGGCCGCAACCATCGTCT
TGTTGATGGATATATGACACAATTAATAGGAGAGAGCCACCGAGCATCTGAAGATGAGTTGATTCCA-----------GA
TGGGTGAAGAGAAGCAGGAAATTGAGAAAACATTTCATGGGTATACCATCAAGAAGAGGAATAATAGCTTGGTCACCATT
GATAGAGTTTGGCAAATGGCAACCGACAACGACATCCTTTTGGCCCGTTGCCCGTGGCTTCGAGATTTATGCCTTTCATT
TGCTTTATTCAAGCTGCTTAAACATCAGTTCGCAAAGTGTCACGTCACCGTATTCGGCTCTATCAACGCATTCAATTTTG
TCCTAAATGTACTGGTTAACAAGGGAAATCCGGACACGGTATTCAGAGTCATTGCAGATGAGGTATCTTTTGTGCTTGAT
TATTATTATTCATCTCTCCCAACTTCAAGCTTTGGACGACTGCTGCCAGTTCTTAACATCATTGTCTCCCTCTCAATTAT
AATTTGGTGCTTGCTTGTCATGCCAAGGATGTCAATGTTTTTCATACGTCCACTTTCACACAGTCAGATATGGTGCTTCA
CACCTTGCAAGTTACCGAAGGACATAGAAGCCATCAGGTGGAATATGGATAATCACATGTTATACTTCGGCAACTTGGTT
CTAAGCTTCTTGCCCACATTTTTGCTAATTGTAGCGGTTATATTTGTTGAGGCATGGCAGATCATATCCTACTTGTGCTC
CAACTGGTTCAAGTTAACCCTGTTTAGTAGCTATGTGACCCATGTCTCTTGGCAACAATCTCCTTGCATGCGGAGATTGT
TTGGTCTTGTTCTCAAGTTCAAGATTAAGTTCATGCAGAATT---GGACTGATCAAATGGGTCAAATATCACTAGTAGCA
CACTCACAACCAGAAAAATGTGTCTTGAGCCAACCGTTCTTTTACTTCTCTAGCCCAAGGCCGAGGGTGCGGCGGATCAA
TATACCATCAGAGGTGAAAGCCTCAATTATTGACACACTGAAAAGTAGTAAAGGTTGCTTGAGCAAAGGCACCGCTGCCC
TCCTGGACAATGGGATAGGCAATCATGTTCTCTGGGCATGCGAAGAACAAGACATATCCCATATTATCCTTGTTTGGCAC
ATAGCCACCGACATCTTCAAGGCCGGGCATGGAGCTTCAACCGATTGCTCAGCCGACAAGAAGACCGCAATGCATATGTC
ACAATATTGCGTCTACATGATGGCATCCACTCCCGAACTACTGCCACCAGACAAGGGATGGTCCAAGAAATTATACAAGA
TTGTGAGCGAAGATATCAAGCATACTTTCGCCGGTGGGAGTGTGTCGGTGGAATATGACATCATGGTGCAACTCCTTGGT
GAGGAATCCAGGCATGAGGTAGTGAAGAGAGGAGCAAGGCTGGGAAAGCAGCTGGTGGAGTTGATTCCAGATGAGGAGAC
GGGGTGGCACATATTGGCTTGCTTCTGGTCTGAGTTGATCTTGTATGTTGCTCCCTCTCATAACGTCAACGCACATAAGA
AGGCACGTGCCCATGGTACCGAGCTGGTGACGCTCATATGGGCCTTGTTGAGGCACGCCGGGGTCATTGACAGGCCCGAC
ACCCAAGTTGTCCCTTAGGTTTGAAATGGTTTTGTGTTTTTTTTCATAATTTACCAGTACCAGTTTGCTCCTAGCTACAA
GTGTGTATGATTTGATTTGTGCTTGTTTTCCTAGTATGGCGGGTCAGCCGGATGATGGCTGACTCTCAAATCGTTGTGCT
CCTAGCTAGCTGCGAGTGTCTATGATTTGCTTTGTATGTTATTTACATTGTATGCCGAGTCAGCATGGACGATGGCTTAC
TATTAAATCGAGTATCTCTTTCATTCAAAAGAATTGTTGTTACTAATTTGTTCTTAGTTAGCATGATTTATTGGTTTCTT
TTTGTTTTTGGACTTTTCGATAAAGGGCATTTTTATTGACTCAAAATATAGCATCAAGCGGATACAAAACATGATGAGCA
TCGTCCGGCCTCTGCATAACTAAGATGCACGCCGCCAAACAAAAACAAACTGAAAGAAGATAAAAAGGCGACATATCAGC
GAGGGTAGGATCATATAGGACCAACGGTATGCCTATGTCGAAGGAGTTGGTGCGCCAATCCGGAGATTATGCTGCCACCC
ATGCCGGGTGAAGACCTCCCTGGCCACCCGCTCCAGCCACATACACACCGTCTTGAATAGTGGTTGATACTCCGTTGTGT
TTTTGGACTTATTTGTATCTGTCATTTACTCTCCAGTAATTATTACCATGTGGTAGATCAGACTGGATGATGAATTGTTA
ATCTTTGGAATAATATATCTCTGCCTTTCATTTGACTTGTTGATATTTTTTTTTGAAGAGTTTCTGTTTAGCTTGGATTC
GTGTGACAACTCATTCAACTAAAATGGCTTAATTAGCAAACAATCATTGCATCATCACCATCAAGCACCTTAAACAATCA
TCATGTTCAGGACAATGTTCTGCTGCTTGTTTTAGGCATGCATAAATCACCATCAAGCACCTGAAACAGTGGTCATGTTC
GAGAATTGCATTAGCACAAAGAAAATAACTGCGCCGAGAACATCGTATTATCCTGCAA
>chr3D_1
GTATTAGTTTAGAAGTACGAAAGACCGATGGC-GAATATAAACAAGTCTAGCTGGGAGTAGGTGCAGGAAAATTGTGGGC
TTGCTCCAATCCTCATCGTTTTGCAACAG--GACCAGACCGGAGATCCTCCAAATCCCAACAATCTCCTGGTGTTGGTAA
GTCTCACGTTGTTCAGATAATTAGTCTTGGTTGTTTATATGCATTTTGTGATGGTTCATTAAACTCCTCTCATGTTTGGT
GTGCCATTTTAATTCGCCTAGGTGCTTATATTTGTGTATTTACACATAGTTACGCTAACTAGTGCATGCTTCAACATGTA
AATCAGGTGAGGAGATGGCTAATGTTAC---AGAATGCTCCCATTCTGCGGTAACGAATTTTATTCGGGGGGTAAATGCA
CAGTTGTGGCGCTCCAATACGCTCATGGCTGCCAACGCCGTACTTGTCCTGATCATGGTAGCGATCAGTGCCTCTGGGCG
GCACTATCGTCAAGTTGGAGTGACCCGCTTCGTCTTCCAAGGAGCCACAGTACTGTACCTTCCCATCATCTCCTATGTTG
TCTCCTCCATTGGCAAGTACAACACAAGAGGCCTGGATATGTATTGCTATGGCGAGTACAACGTAGTCATGCTCCTAATT
TGGGCAGTTCTTGTTCAAATTGTTGGAACCAATACAAGTGCAACTGTCGCTATTGATGATGATGATGGTCAGAAGCTCGG
CCCCTCAATCGAGTTACTCGCTCGTGCAGTCTGGACATCATATCTTGTGTTCTACTATTTACATCATCATTATTTGATTA
TGCCATCCATCACCTTCCACTATAAATCCTTCATCCAACGTCACTACCTTTGGAACTTTCTCATTGTCTTGTGTGTTCTT
AGTTTTGCAAAAATTACGCTCAAGTTCTATGCATTTGAGAAAGCAAGAAGATCTTTCGCTCTTGGTCGGAACTCTCGTCT
TGTTGCTGGATATATGGAACAATTATTAGGAGAGAACCATCAAGGATCTGAAAATGAGTTGATTCCACCACTTATTGTGA
TGGGCGAAGAGAAACAGGAAATTGAGGAAACGCCTCATGGGTATACTATCAAGCAGAGGAAGAATAGCTTGGTCACCATT
AATAAAGTTTGGCAAATGGCGGACAACAATGACATCCTTCTGGCACGTCGACCATGGCTTACAAATTTATGCCTTTCATT
TGCATTATTCAAACTGCTTAAACATCAGTTTGCAAAGTGCCACCTTGTCGTACTTGGCTCTACCAAGGCGTTCAATTTTG
TTCTAAATGTACTTCTTAACAAGAGAAATCCAGAGACGGTATTCAGAGTCATTGCAAATGAGGTATCCTTTATACTCGAT
TCTTATTATTCATCCCTCCCAACTTCCAACTTTGGGCGATTGCTGCCAGTTCTTAACATCATCGTCTCCCTCTCAATTAT
AACATGGTGCTTGCTCGCCATGGCAAAGACAGCATATCTATCTGATCCATCTGTGACCCATCAAATATATTGTGAACCTT
CATGTGTGTTGCCCATGGAGAACCGGTTCTACTCTAATTATAACCA------------GTTGTACCTCGGCAACATACTT
TTTAACTCATTGCCCACATATTCCCTATTTGTAGTAGTTATACTTGCCGAGGCATGGGACATCATATCCTACTTCTGCTC
CAACTGGTTCAAGGTAACCCTGCTTTGTAGCTATGTAACCCATGTCTCTTGGCAGCAGTCTCCTTGTATGCAGAGATTGC
TTGCTCTTGTTCTGCCATTCAAGATCAAGTTCATAAAGAATTATTGGACTGATAAAATGGGTCAAGCATCGCTACCAGCA
CAACCACAGCCAAAAAAATGTGTCTTTACCCAACCATTCTTTTACTTCTTTGGTCTGAGGCCGAGGTTACAGCATGTCAA
TGTATCATCAGACGTGAAGGCCTCCATTATTGACACCTTGAAAAATAGCAACAATTGCCTGAGCAAAGGCACCACTGCCC
TCCTGAATAACGGGATAGGCAATCATGTCCTCTGGGCATGCGAAGAACAAGACACATCCCATGTTATCCTTGTTTGGCAC
ATCGCCACCGGCATCTTCGAGGCCAGGTATGGAGCTTCAACCGGTTGCTCGGCCGAGAAGAACACCACAATGCATTTGTC
AAGGTATTGTGTCTATCTGATGGAATCCACTCCTGAACTATTGCCACCTGATAAGGCATGGTCCAAGAAATTGTACAAGA
TCGTGAGCGAAGATATCAAACGTGCTCTCCCCGGTGGCAGCATGTCGGTAGAATATGGCAGCATGGTAGAACTCCTTGGT
GGGGAGTCCAGGCATGAGGTGGTGAATAAAGGAGCGAGGCTAGGAAAGCAACTGGTGGAGCTAGTTCAAGATGAGGAGAC
AGGGTGGCACATCTTGGCTAGCTTTTGGTCCGAGTTGATCTTGTATGTTGCTCCCTCTCATAACATCAAGGCGCATAAGA
AGGCACGTGCCAATGGTACCGAGCTGGTGACGCTCATCTGGGCCTTGCTGAGGCATGCCGAG---ATTGACAGGCCAAAC
ACCCAAGCCGTTGTTTAGGGTTAAAATGGTTTTGTGTTTCCTTTTCAATGGTTTGTGTG------TGCTCCTAGCTACAA
GTGGGTGTGATTTGCTTTGTGCTTATTTAATGTGTATGGCGGGTCAGCCTGGATGA------------------------
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>SNPs
------------S------S-SSSSSSSSS-SS-------------------------------------S-------S-
--S--------------------------SS--------S----------S--S--------S--S-S-----S-S----
----S--S-------S--------------S-------S---------------S------S------S-----------
---SSS--------S-----S---------------------S---------S------S-S------------------
-------S----S-----------S---SSS---------S-S-SS---S-----SS-------SSS-------------
---S--------------S-S-----S------------S-S-----------------S--S-----------S--S--
--------S---S--S---------------S------SS---------SS---S-----------------------SS
SS--------S---------S-----SS----S----SS--S-S----S----S--SSS---S----S------------
---S-S--S-----S-----------------------------SS---S-S------SSS-S--SS----S--S-SS--
--------------------S---SS--S-------------------S----------S--S--S------------SS
--SS-S-SSS----SSSS-SS-S-----------------------------------S---------S-S---------
-----SSSS---S----S-----S------------S----S--------S--------------S--S---SS------
-----S----------SS-------S---------S---S-S--S-------S---------------------------
----S--------S------------S----SSS------------S------S-------S------------------
S---S---------------SSS-S----S---------S----S---S-S--S------SS-S----------------
---S--------S-----------------S--------S---S-SSS----S-S-------S---S--S----------
-S-----------SS--------S-------S--S---------------------S----------S---S-S--S---
-S------------S-----------S-S------S---S----------------------S-----------------
--SS-----------S-S----S---S--SSS--SSSS-S-SSSSS-SSS-SS-SS-S--SSSSSSSSSS--SSSSSSSS
--SS-SSSSS-SSSSS-S--S--SSSSSSSS-SSS-SS-SS--SSSSSSSSSSSSSSS---S---S--------S-SS--
S-S-S--SS----------S--SS---S------SS------S---SS---------S-S--------------S-----
-------------S--------S--S----------S-----------------S--S--------S----S-------S
---S---------SSSS--------S--------SS-----------------S-----------SS---S---SS----
--SS----S---S-------------S-S------S-------------S-S-S-SS---------S-S-S--SSS----
-S--S-------S-----S-----S-----------SS------S---S--SSS----S--------------S------
-----S-S--S-----------------S-------------------------S-------S-----------------
--S-------S-------S-----S--S---------------S------S-----S-----S---S--------S----
-SSS-----S-----SS------S---------S------S-------S--S----S---------------S-------
-S-----------------S-S-S--S--S-------S--SS-------S-------S--S------SS-----------
-S---S--------------S-----S-S------S-----S--------S---------S-SS---S------------
S-----------S------S----S-----S---------------------------------S----S--S-------
-----------S-------------------------S---------S-------S----S-SSS-----------SS--
-------SS--SSS-----S--S----------------SS---SSS-SSS-SSSS--SSSSSSS---------------
---S--S-------S---------S---SSSSS----------------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_33
-------------AGTACGGAGAGAGCGATGGT-----------------------------------------------
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>reverse_1444
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---TTGGTGCTTGCTTGTCATGC---------------------------------------------------------
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>forward_623
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-------------------------------------------ATGCTCTGGCCAGACAAACA-----------------
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>reverse_1735
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------------------------------------------------------ACAATCTCCTTGCATGCGGA------
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>forward_1463
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---TTGGTGCTTGCTTGTCATGC---------------------------------------------------------
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>reverse_2721
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CCTAGCTAGCTGCGAGTGTC------------------------------------------------------------
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