>input_sequence_48903
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---ATGGCGGAGCTGCTGCGAGCGGCCGGTTTCTTTGACCTGCGCGGCGCGGCGCCGTTCGTCGTGGCAGCGGCGGTGGC
GAT---GTACTTCTTGGTCGAGCAGCTGTCCTACCTCCGCAAGAAGGGCCCGCTGCCCGGCCCGTCGCTCGTCGTGCCGT
TCCTCGGCAGCGCCGTGCGCATGATCCGCGACCCCACGGGGTTCTGGGACGCGCAGGCGGCGCGGGCCAGGGAGTCCGGC
GCCGGCCTCGCCGCGGACTTCCTGTTCGGCCGCTTCATCGTCTTCGTCCGCGACTCGGAGTTGTCCCACCGCGTCTTCGC
CAACGTCCGCCCCGACGCCTTCCACCTCATCGGCCACCCCTTCGGCAAGCGCCTCTTCGGCGACCACAACCTCATCTACA
TGTTCGGCGAGGACCACAAGGACCTGCGCCGCCGGATCACGCCCAACTTCACGCCGCGCGCGCTCTCCACCTACGCCGCC
ATCCAGCAGCGCGTCATCCTGGCCCACCTCCGGCGGTGGCTCGACCAGAGCGCCGCCACCGGCGAGG---------CCAT
GCCGATTCGGGTGCCCTGCCGCGACATGAACCTGGAGACGTCGCAGACGGTGTTCGTCGGCTCCTACCTCTCCGAGAAGG
CCAGGGAGCGGTTCGCCAAGGACTACGCCCTCTTCAACCTCGGCCTCATGTCCGTCCCCGTCGACCTGCCCGGGTTCGCG
TTCCGGCGCGCGAGGCTGGCCGTGGCGCGGCTCGTGCGCACGCTCGGGGAGTGCGCGCGGAAGAGCAAGGCGCGCATGCG
CGCCGGCGGCGAGCCGGAGTGCCTGGTGGACTACTGGATGCAGGAGACGCTGCGGGAGATGGACGAGGCCGCGGCGGCGG
GGCGGCCGCCGCCGGCGCACACCGGCGACGAGGAGTTCGGGGGCTTCCTCTTCGATTTCCTGTTCGCCGCCCAGGACGCG
TCCACGTCCTCGCTCTGCTGGGCGGTCTCCGCGCTCGACTCCCACCCGGACGTGCTCGCCCGCGTGCGCGCCGAGGTGGC
CGCGGCCTGGTCGCCGGAGTCGGGCAAGCCGATCACCGCCGAGAAGATCCAGGGGATGAGGTACACCCAGGCGGTGGCGC
GGGAGGTGGTCCGGCACCGGCCGCCGGCGACGCTGGTGCCTCACGTCGCCGGCGAGGCGTTCCAGCTGACGGAGTGGTAC
GCGGTGCCCAAGGGGGCCATGGTGTTCCCGTCGGTGTACGAGTCGTCGTTCCAGGGGTTCGCCTCGCCGGACGCGTTCGA
CCCGGAGCGCTTCTTCTCGGAGGCGCGCCGGGAGGACGTGGCGTGCAAGCGCAACTTCCTGGCCTTCGGCGCCGGCGCGC
ACCAGTGCGTCGGCCAGCGGTACGCGCTGAACCACCTCGTGCTCTTCCTGGCGCTCTTCGTGTCCGTCGCCGACTTCCGG
CGGGACGGCACGCCGGGGTGCGACGAGCCGGTGTACATGCCGACCATCGTGCCCAGGGACGGCTGCGCCGTGTACATGGA
GCAGCGCTGCCGCACGTTCCCATCCTTCTGA-------------------------------------------------
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>chr3A_1_TraesCS3A01G132000
CTACGACCCAAAAGACTTATGCCTCCTTTGGTTCATAGGATAGAAATTTTATAGGAATAGAAAAATCATAGAAAGTGAGA
TGACATGCATCTCAATTCCTATAAAGAAAGAGATGTCATTTGATGCATAGGATAGGAATTTTTTCATTAAGTCTAGACTA
ATGTTTTTTTTCCTCCAAAATGTGAAGGATTGAACCTATCCTACACAGGAATAGGAATCCATTCCTATAAACCAAAGGGC
GTCAAAGGAATTTTTCCTTTGCAAATCCTATCCTATAGAATTCCTATAAAATTCCTACAAACCAAAGGA-TTAAAAAGAA
CTTTTCCTATAAAATTCTTATCCTTCAGAGTTTCTACACCATTCCTCGCTGTGCTTGCTGAATGATTGTAACAG------
GGTGTTAATTTCTTAATAAAGCTCCCATGATTCGATGCAAAAGAAGAAGAAAAAACCCAAAGGACCTACACGAC------
-----------------------------GAGTAATTCAGTCTCTGGAAACATTCCGGCGGCAAAGCAGCAAGCCTCTCC
CTTTTTCAAAATCCGGCGACATGCCTGCGTGC----CAGTGTGCGCCGCCCCGCCCATCCCATCCCATCCCATCCCTGTC
GCCACCACT------------------CCCATGCCCTTCCCGTGCAAAACGCCATCCAGAAG--------------CACG
CGGCCACGTCCCCCGGCCTTTTCCCGTCGCGGCTTCTGCTTCCCCCGTCTGTCTGCGCGCCTCGTTTCTTCCACCCCGCG
GCCGCGCGCAGCGACTGCAGGCCACCAGCCAATCCGCCCCGGCCCGTGCAGCCAGCCCAACACAACCCAGCACGGCCGCC
ACCACCTTTCGTTTTCCCAGCGCCACCCAGCCAGCC---------TTTGACCGCCGGCTCCCACTCCAACCTTC------
---------------------CTGCTTAAATACGCCGTCCCCGGTAGACAGACCGGTTCAATACATTTCTCGTGTTCTTT
TGGTGTGCAGGCCAGGGAGAGCTCCAGCCCTGAGCTCCACGATAACCTCAGCG----AGCCAGCACTGGGCGGG-----C
GCAATGGCGGAGCTGCTGCGAGCGGCCGGTTTCTTTGACCTGCGCGGCGCGGCGCCGTTCGTCGTGGCAGCGGCGGTGGC
GAT---GTACTTCTTGGTCGAGCAGCTGTCCTACCTCCGCAAGAAGGGCCCGCTGCCCGGCCCGTCGCTCGTCGTGCCGT
TCCTCGGCAGCGCCGTGCGCATGATCCGCGACCCCACGGGGTTCTGGGACGCGCAGGCGGCGCGGGCCAGGGAGTCCGGC
GCCGGCCTCGCCGCGGACTTCCTGTTCGGCCGCTTCATCGTCTTCGTCCGCGACTCGGAGTTGTCCCACCGCGTCTTCGC
CAACGTCCGCCCCGACGCCTTCCACCTCATCGGCCACCCCTTCGGCAAGCGCCTCTTCGGCGACCACAACCTCATCTACA
TGTTCGGCGAGGACCACAAGGACCTGCGCCGCCGGATCACGCCCAACTTCACGCCGCGCGCGCTCTCCACCTACGCCGCC
ATCCAGCAGCGCGTCATCCTGGCCCACCTCCGGCGGTGGCTCGACCAGAGCGCCGCCACCGGCGAGG---------CCAT
GCCGATTCGGGTGCCCTGCCGCGACATGAACCTGGAGACGTCGCAGACGGTGTTCGTCGGCTCCTACCTCTCCGAGAAGG
CCAGGGAGCGGTTCGCCAAGGACTACGCCCTCTTCAACCTCGGCCTCATGTCCGTCCCCGTCGACCTGCCCGGGTTCGCG
TTCCGGCGCGCGAGGCTGGCCGTGGCGCGGCTCGTGCGCACGCTCGGGGAGTGCGCGCGGAAGAGCAAGGCGCGCATGCG
CGCCGGCGGCGAGCCGGAGTGCCTGGTGGACTACTGGATGCAGGAGACGCTGCGGGAGATGGACGAGGCCGCGGCGGCGG
GGCGGCCGCCGCCGGCGCACACCGGCGACGAGGAGTTCGGGGGCTTCCTCTTCGATTTCCTGTTCGCCGCCCAGGACGCG
TCCACGTCCTCGCTCTGCTGGGCGGTCTCCGCGCTCGACTCCCACCCGGACGTGCTCGCCCGCGTGCGCGCCGAGGTGGC
CGCGGCCTGGTCGCCGGAGTCGGGCAAGCCGATCACCGCCGAGAAGATCCAGGGGATGAGGTACACCCAGGCGGTGGCGC
GGGAGGTGGTCCGGCACCGGCCGCCGGCGACGCTGGTGCCTCACGTCGCCGGCGAGGCGTTCCAGCTGACGGAGTGGTAC
GCGGTGCCCAAGGGGGCCATGGTGTTCCCGTCGGTGTACGAGTCGTCGTTCCAGGGGTTCGCCTCGCCGGACGCGTTCGA
CCCGGAGCGCTTCTTCTCGGAGGCGCGCCGGGAGGACGTGGCGTGCAAGCGCAACTTCCTGGCCTTCGGCGCCGGCGCGC
ACCAGTGCGTCGGCCAGCGGTACGCGCTGAACCACCTCGTGCTCTTCCTGGCGCTCTTCGTGTCCGTCGCCGACTTCCGG
CGGGACGGCACGCCGGGGTGCGACGAGCCGGTGTACATGCCGACCATCGTGCCCAGGGACGGCTGCGCCGTGTACATGGA
GCAGCGCTGCCGCACGTTCCCATCCTTCTGAGCTGGTCCGTCTTGGGTCCGTCCTCTTGTCCCCTTCGCCCTCTG-----
-----------CTCTCGCCCCTTCCTCTT------------------------------------TCATGTCGATGTGAT
GAGTTGTTGTCCAGCGCGGGTTGGTCCATTCATCAGTTTATTGTTTTGTTTGTCATTGGTTTGCTGCTGGCCGGCGGGCC
GCATGCGTCATGTGCTG---------ATTTTATTGGGGTTAAATTGGCCATGTCTGAAATCTGAAATGGAATTGCACGAT
TTGACTATTTTGCTTGACTGTTTCTAGTCTTGGTCTCCTGTTTGGATAACTCATCGGTACGACCAGTCTAAGCTTAGGTC
ACTTCGGTTTGCATTTTTGTTGTTGATGAATACACAGTAACAGCATGAGCATCCTGCGAATTAACCTGTGGTTGAGTTGG
TTAGGTGGACAGTGATATCCCTAACCCACCAGGGTTCAAATCCTGGTGCTCCCATTATTTCTGGATTTATTTCGGGATTT
CCGGCGATACATTTTTAGTGGGAAGTTGACCAACATGACATGCCATCAAAGAATAAAGAAAATCTAAAATAAATTTGTAA
AATACGATCACTTATGACAAGTCTATAACTTGAACTCGGATGATTAGGTTCCACCACAAAAAATTCTTACCATTTAAGTT
AAACTCAGTCGCTTTGTTTGCATATAATTGAGATGTACAAAAGCAATTTTTTGATATAAATTATTTCGTCCAACCGATGG
GAAACGCGTGAACTTTCTTATGCACGAGTATCTTGGAAACTATTGTAATAGGGGCCGACCCTATGATGGGCAACGTCTTC
TAATATCATATATATGCATGTTCCCTAAATATATACGCATGTGCGTTGCGCTGCAAGATTTTCTGCCAACTTGTATAATC
TAACTACTCCAAAATGTATTAACTATTTTCTAAGAGCATGCAAGAGGATTGTGTGCCATTGTATTAAGTGGGAGAGAACG
GTTTAGTTACAAGAAACACTCAACTAGCCACAAACGGTCATCGTAGCCATCT
>chr3D_291
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--------------------------------------------------ATTCCCACAACACACAGGACTTAAAAAGAA
CTTT--CTACAAAATTCTCATCCCTCAGAATTTGTACACCATTCCTTGCTGTGCTTGCTGAATGAATGTAACAGGAACAG
GGTGCTAATTTCTTAATAAAGCTCCCATGATTCGATGCAAGACAAACAGAAAACATTTCTATCAAAAAATTATCCTTACA
GTTTTCTACGCCATTCCTGTAAACACCGTGAGTAATTCCGTCTCTGGAAACATTCCGGCGGCAAAACAGGCCTTT--TCC
CTTTTTCAAAATCCGGCGACATGCCTGCGTGCGTGCCAGTGTGCGCCGCCCCGCCCCG-----CCCTGCCCATCCCTGCC
GCCACCAACCTGGGATCATCGTACCTCCCCATGCCCTTCCCGTGCAAAACGCCATCCAGAAG--------------CACG
AGGCCACGTCCCCCGGGCTTTTCCCGTTGCGGCTTCTGCTTTCCCC----GTCTGCGCGCCTCGTTTCTTCCACCG----
--CGCGCGCAGCGACTGCAGGCCATGAGCCAATCCGCCCCAGCCCGTGCAGCCAGCCCAACACAAC-----ACGGCCGCC
ACCACCTTTCGTTTTCCCAGCGCCACCCAGC----C---------TTTGACCACCGGTTCCCACTCCAGCCTTCCTCCCT
TCCCCTCCCTGCCACGCATGGCTGCTTAAATACGCCGTCCCCGATAGACCAA----TTCAATACAATTTTCGTGTTCTTC
TAGTGTACAGGCCAGGGAGAGCTTGAGCCAGC--------------------GAGCCGGCCAGCATTGGGCGGGCGCAAC
GCAATGGCGGAGCTGCTGCGACCGGCCGATTTCTTTGACCTGCGCGCGGCGGCGCCGTTC---TTGGCGGCGGCGGTGGC
GCT---CTACTTCCTGGCCGAGCAGCTGTCCTACCTCCGCAAGAAGGGCCCCCTGCCAGGCCCGTCGCTCGTCGTGCCGT
TCCTCGGCAGCGCTGTGCGCATGATCCGCGACCCCACGGGGTTCTGGGACGTGCAGGCGGCGCGGGCCAGGGAGTCCGGC
GCCGGGCTCGCCGCGGACTTCCTCTTCGGCCGCTTCATCGTCTTCATCCGCGACTCCGAGCTGTCCCACCGCGTCTTCGC
CAACGTCCGCCCCGACGCCTTCCACCTCATCGGCCACCCCTTCGGCAAGAGGCTCTTCGGCGACCACAACCTCATCTACA
TGTTCGGCGAGGACCACAAGGACCTGCGCCGCCGGATCACGCCCAACTTCACGCCGCGCGCGCTCTCCACCTACGCCGCC
ATCCAGCAGCGCGTCATCCTGGCTCACCTCCGGAGGTGGCTCGACCAGAGCGCCGCCACCGGCGAGG---------CCAT
GCCCATACGGGTGCCCTGCCGCGACATGAACCTGGAGACGTCGCAGACGGTGTTCGTGGGGTCCTACCTCACCGAGAAGG
CGAGGGAGAGGTTCGCCAAGGACTACGCCCTCTTCAACCTCGGCCTCATGACCGTCCCCGTTGACCTGCCCGGGTTCGCG
TTCCGGCGCGCGAGGCTGGCCGTGGCGCGGCTTGTGCGCACGCTCGGGGAGTGCGCGCGGAAGAGCAAGGCGCGTATGCG
CGCCGGGGGCGAGCCGGAGTGCCTCGTCGACTACTGGATGCAGGAGACGCTGCGGGAGATGGACGAGGCCGCGGCGGCGG
GGCTGCCGCCGCCGGCGCACACCGACGACGAGGAGTTTGGAGGCTTCCTCTTCGACTTCCTGTTCGCCGCCCAGGACGCG
TCCACGTCCTCGCTCTGCTGGGCAGTCTCCGCCCTGGACTCCCACCCGGACGTGCTCGCCCGCGTGCGCGCCGAGGTGGC
CGCGGCCTGGTCGCCCGAGTCCGGCAAGCCCATCACCGCCGAGAAGATCCAGGGGATGACGTACACCCAGGCGGTGGCGC
GGGAGGTGGTCCGCTACCGCCCTCCGGCGACGCTGGTGACGCACGTCGCCGGCGAGCCGTTCCAGCTGACGGAGTGGTAC
ACGGTGCCCAAGGGGGCCATCGTGTTCCCGTCGGTGTACGAGTCGTCGTTCCAGGGGTTCACCTCGCCGGACGCGTTCGA
CCCGGAGCGGTTCTTCTCGGAGGCGCGCAGGGAGGACGTGGCGTGCAAGCGCAACTTCCTGGCCTTCGGCGCCGGCGCCC
ACCAGTGCGTCGGGCAGCGGTACGCCCTGAACCACCTCGTGCTGTTCCTGGCGCTGTTCGTGACCGTGGCCGACTTCCGG
CGGGACAGGACGGCGGGGTGCGACGAGCCGGTGTACATGCCGACCATCGTGCCCAGGGATGGCTGCGCCGTGTACATGGA
GCAGCGCTGCGACACGTTCCCATCGTTCTGAGCTGGTCCGCCTTC----------CTTGTCCCCTTCGCCCACCCACAGA
GTTCCCTCTGTCTCTCGTCCTTTCCTCATTCGTTTATGTTTTCCTTTCTATTCTTCTTCATCTGGTCATGTCAATGTGAT
GA-TTGCTGTCTTGCGCGGGTTGGTCCATTCATCAGTTTATTATTTTGTTTGTCATTGGTT---TGCTGGCCGGCTGGCC
GCATGCGTCATGTCTCATGTGCTGATATTATATTGGGGTTAAATTGGCCATGTCTGAACTCTGAAATGGAATTGCACGAT
TGGACTATTTGT-TTGACTATTTCTAGTCTTGGTCTCCTGTTTGGATAGCTCAT--------------------------
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----------------------------------------------------
>chr3B_521
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--TTTTCAGAATCCGGCTAGGACA-----TGCGTGCCAGTGTGCGCCGCCCCGCCC---------------ATCCCTGTC
GCCACCAACCTGGGATCATCGTACTGCCCCATGCCCTTCCCGTGCATAACGCCATCCAGAAGGGAGGGCGCAAACGCACG
AGGCCACGTTCCCCCAGGC-TTCCCCTTCCGGCGTCTGCTTTCCCC----GTCTGCGCGCCTCGTTTCTTCCACCG----
--CGCGCGCAGCGAGCGCAGGGCATGAGCCAATCCGCCCCGGCCCGTGCAGCCAGCCCAACACAAC-----AACG--GCC
GCCACCTTTCGTTTTCCCAGCGCCACCCAGC----CAAGCCAGCCTTTGACCACCGGTTCCCACTCCAACCTTCTTCCCT
TCTTCTCCCTGGTACGCATGGCTGCTTAAATACGCCGTCTCCGATAGACCAA----TTCAATACAATACTCGTGTTCTTT
TAGTGTACAGGCCAGGGAGAGCTTGAGCCTTGAGCTCCACGATAACCTCAGGGATCCAGCCAGCATTGGACGGGCGCAAC
GCAATGGCGGAGCTGCTGCGAGCGGCCGATTTCTTTGACCTGCGCGCGGCAGCGCCGTTC---GTGGCGGCGGCGGTGGC
GCT---CTACTTCCTGGCTGAGCAGCTGTCCTACCTCCGCAAGAAAGGCCCCCTGCCAGGCCCGTCGCTCGTCGTGCCGT
TCCTCGGCAGCGCCGTGCGCATGATCCGCGACCCCACGGGGTTCTGGGACGTGCAGGCCGCGCGGGCCAGGGAGTCCGGC
GCCGGGCTCGCCGCGGACTTCCTCTTCGGCCGCTTCATCGTCTTCATCCGCGACTCCGAGCTGTCCCACCGCGTCTTCGC
CAACGTCCGTCCCGACGCCTTCCACCTCATCGGCCACCCCTTCGGCAAGAAGCTCTTCGGCGACCACAACCTCATCTACA
TGTTCGGCGAGGACCACAAGGACCTGCGCCGCCGGATCACGCCCAACTTCACGCCGCGCGCGCTCTCCACCTACGCCGCC
ATCCAGCAGCGCGTCATCCTGGCTCACCTCCGGAGGTGGCTCGACCAGAGCGCCGCCACCGGCGAGG---------CCAT
GCCCATACGGGTGCCCTGCCGCGACATGAACCTGGAGACGTCGCAGACGGTGTTCGTGGGCTCCTACCTCACCGAGAAGG
CGAGGGAGAGGTTCGCCAAGGACTACGCCCTCTTCAACCTCGGCCTCATGACCGTCCCCGTTGACCTGCCCGGGTTCGCG
TTCCGGCGCGCGAGGCTGGCCGTGGCGCGGCTTGTGCGCACGCTCGGAGAGTGCGCGCGGAAGAGCAAGGCGCGCATGCG
CGCCGGCGGCGAGCCGGAGTGCTTGGTGGACTACTGGATGCAGGAGACGCTGCGGGAGATGGACGAGGCCGCAGCGGCGG
GGCGGCCGCCGCTGGCGCACACCGACGACGAGGAGTTTGGGGGCTTCCTCTTCGACTTCCTGTTCGCCGCCCAGGACGCG
TCCACATCCTCGCTCTGCTGGGCAGTCTCCGCCCTGGACTCCCACCCGGACGTGCTCGCCCGCGTGCGCGCCGAGGTGGC
CACGGTCTGGTCGCCGGAGTCCGGCAAGCCCATCACCGCCGAGAAGATCCAGGCGATGAAGTACACCCAGGCGGTGGCGC
GGGAGGTGGTGCGCTACCGCCCGCCGGCGACGCTGGTGACGCACGTCGCCGGCGAGCCGTTCCAGCTGACGGAGTGGTAC
ACGGTGCCCAAGGGGGCCATCGTGTTCCCGTCGGTGTACGAGTCGTCGTTCCAGGGGTTCACCTCGCCGGACGCGTTCGA
CCCGGAGCGCTTCTTCTCGGAGGCGCGCAGGGAGGACGTGGCTTGCAAGCGCAACTTCCTGGCCTTCGGCGCCGGCGCCC
ACCAGTGCGTCGGGCAGCGGTACGCCCTGAACCACCTCGTGCTGTTCCTGGCGCTGTTCGTGACCGTCGCCGACTTCCGG
CGGGACAGGACGGCCGGGTGCGACGAGCCGGTGTACATGCCGACCATCGTGCCCAGGGATGGCTGCGCCGTGTACATGGA
GCAGCGCTGTGACACGTTCCCATCGTTCTGAGCTGGTCCGGCTTCCTTG-----TCTTGTCCCCTTCGCCCACAGATTT-
----CCTCTGTCTCTCGTCCCTTCCTCATTCGTTTACGTTTTCTA-----------TTCATCTGGTCATGTCAATGTGAT
GA-TTGTTGTCTCGCCCGGGTTGGTCCATTCATCAATTTATTATTTTGTTTGTCATTGGTT---TGCTGGCCGGCTGGCC
GCATGCGTG-------ATGTGCTGATATTGTATTGGGGTTAAATTGGCCATGTCTGAACTCTGAAATGGAATTGCACGAT
TGGAC---------------------------------------------------------------------------
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>chrUn_1035
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-------------------------------------ACGTGCGGGCGGCGGCGCCGTTG---GTGGCGGCGGCGGTGGC
CTT---CTACTTTTTGGTGGAGCAGCTGTCCTACCACCGCAACAAGGGCGTCCTGCCAGGCCCCTCCTTGGTGGTGCCCT
TCCTCGGCAGCATCGTGCCCATGATCCGCGACCCCACCGGCTTCTGGGAGGTACAAGCCGCGCGGGCGAGGGACTCCGGC
GCCGGCCTGGCCGCCGACTTCCTCGTCGGCCGCTTCATCCTCTTCGTCCGCGACTCGGAGCTGTCCCACCGCGTCTTCGC
CAACGTCCGCCCCGACGCCTTCCACTTCGTCGGCCACCCCTTCGGCAAGAAGCTCTTCGGCGAGCACAACTTCATCTACC
TCTTCGGCGACGAGCACAAGGACCTGCGCCGCCGGATGGCGCCCACCTTCACGCCGCGCGCCCTCTCCACCTACGCCGCC
ATCCAGCAGCGGATCGTCCTCGCCCACATCCGCAGGCTGCTCGATGAGACATCTCCGGCCACGCCGG------------C
GCCCATACGGGTGGCCTGCCGCGACATGAACCTCGAGACCTCGCAGACGGTGTTCGTAGGCCCGTACCTCACCCAGGAGG
CGAGGGCGAGGTTCGGCGAGGACTACGCGGTCTTCAACGTGGGCGTCATCGCCTTGCCGGTTGACCTGCCCGGCTTCGCG
TTCCGGCGCGCGAGGCTGGCCGTGGGGCGGCTGGTGCGCACCCTCGCCGAGTGCGTGGGTCAGAGCAAGGCGCGGATGCG
CGCCGGCGGTGAGCCGGAGTGCCTCGTCGACTACTGGATGCAGGGCCTGGTGAAGGAGATGGACGAAGCCGCGGCGGCGG
GGCGGCCGCTTCCCAAGCACACCGCGGACGAGGATCTTGGGGGCTACCTGTTCGACTTCCTCTTCGCCGCCCAGGACGCG
TCCACCTCCTCGCTCTGCTGGGCCGTGGCCGCCCTGGGGTCCCACCCTGACGTGGTGGCCCGCATGCGCGCCGAGGTGTC
CGCGGTCTGGTCGCCGGAGTCAGGGGAGCCCATCACGCCGGACAAGTTCATGCAGCTCAAGTACACCCACGCGGTGGCGC
GCGAGGTGGTCCGGTACCGGCCACCGGCGACGTTGGTGCCGCACATCGCCGCGGAGCCGTTCAAGCTGACGGAGTGGTAC
ACGGTGCCCAAGGGCGCCATCGTGTTCCCGTCGGTGTACGAGTCGTCGTTCCAGGGGTTCACGGAGGCGGAGGCGTTCGA
CCCGGACCGCTTCTTCTCGGAGGCGCGGCGGGAGGACGAGGCGTTCAAGCGCAACTTCCTGGCCTTCGGCGCCGGCGCGC
ACCAGTGCATAGGCCAGCGCTACGCCCTCAACCACCTCGCCCTCTTCCTCGCGCTCTTCGTCTCCGTCGTCCACTTCAAG
CGCCACACCACCCACGGCTGCGACGAGCCGGTCTACATGCCCACCATCGTGCCCAAGGACGACTGCACCGTCTAC-----
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----------------------------------------------------
>chr4B_1038
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----------------------------------------TGCGGGCGGCGGCGCCGTTG---GTGGCGGCGGCGGTGGC
CTT---GTACTTTTTTGTGGAGCAGCTGTCGTACCAACGCAAGAAGGGGGTCCTCCCAGGCCCCTCCTTGGTCCTGCCCT
TCCTCGGCAGCATCGTCCCCATGATCCGCGACCCCACCGGGTTCTGGGAGGTGCAGGCGGCGCGGGCGAGGGACTCCGGC
GCCGGGCTGGCCGCCGACTTCCTGGTCGGCCGCTTCATCCTCTTCGTCCGCGACTCGGAGCTGTCCCACCGCGTCTTCGC
CAACGTCCGCCCCGACGCCTTCCACTTCGTCGGCCACCCCTTCGGCAAGAAGCTCTTCGGCGAGCACAACTTCATCTACC
TCTTCGGCGACGAGCACAAGGACCTGCGCCGCCGGATGGCGCCCACCTTCACGCCGCGCGCCCTCTCCACCTACGCCGCC
ATCCAGCAGCGCATCGTCCTCGCCCACATCCGCAGGCTGCTCGACCACACGTCTCCTACGACCCCGG------------T
GCCCATACGGGTTCCCTGCCGCGACATGAACCTGGAGACCTCGCAGACGGTCTTCGTGGGGCCCTACCTCACCGAGGAGG
CGAGGGCGAGGTTCGGCGAGGACTACGCCGTCTTCAATGTGGGCGTCATCGCGCTGCCCGTTGACCTGCCCGGCTTCGCG
TTCCGGCGCGCGAGGCTGGCCGTGGGGCGGCTGGTGCGCACGCTCGCGGAGTGCGTCGGCCAGAGCAAGGCGCGCATGCG
CGCCGGCGGCGAGCCGGAGTGCCTAGTCGACTACTGGATGCAGGGCCTGGTGAAGGAGATGGACGAGGCCGCGGCGGCGG
GGCGGCCGCTTCCCAAGCACACCGCGGACGAGGACCTCGGGGGCTACCTGTTCGACTTCCTCTTCGCGGCCCAGGACGCG
TCCACCTCCTCGCTCTGCTGGGCCGTGGCCGCCCTGGGGTCCCACCCTGACGTGGTGGCCCGCATGCGCGCCGAGGTGTC
CGCGGTGTGGTCGCCCGAGTCAGGGGAGCCCATCACGGCGGAGAAGTTCGTGCAGCTCAGGTACACCCACGCGGTGGCGC
GCGAGGTGGTCCGGTACCGGCCACCGGCGACGCTGGTGCCGCACATCGCCGCGGAGGCGTTCCAGCTGACGGAGTGGTAC
ACGGTGCCCAAGGGCGCCATCGTGTTCCCGTCGGTGTACGAGTCGTCGTTCCAGGGGTTCACGGAGGCGGAGGCGTTCGA
CCCGGACCGCTTCTTCTCGGAGGCGCGGCGGGAGGACGAGGCGTTCAAGCGCAACTTCCTGGCCTTCGGCGCCGGCGCGC
ACCAGTGCATAGGCCAGCGCTACGCCCTCAACCACCTCGCCCTCTTCCTCGCGCTCTTCGTCTCCGTCGTCGACTTCAAG
CGCCACACCACCCACGGCTGCGACGAGCCGGTCTACATGCCCACCATCGTGCCCAAGGACGACTGCACCGTCTACCTCCA
CCAGCGTTGC----------------------------------------------------------------------
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----------------------------------------------------
>chr7B_1062
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----------------------------------------------------------------TGGCTGTGGCTGTGGC
GTTATACTACTTTCTTGTCGAGCAGCTGTCATACCGCCGCAAGAAGGGGGCCCTGCCAGGCCCGTCGTTGGTCGTGCCGT
TCCTCGGCAGCATCGTGCCCATGATACGAGACCCGGCCGGGTTCTGGGACACGCAGGCGGCCCGGGCAAAGAAGTCCGGT
GCCGGGCTGGCGGCTGACTTCGTGGTCGGCCGGTTCATCGTCTTCATCCGCGACTCGGAGCTATCCCACCGCGTGTTCGC
CAACGTCCGCCCCGACGCCTTCCAGTTCGTCGGCCACCCTTTCGGCAAGGACCTCTTCGGCA---------TCTTCTACC
TGTTCGGCGACGAGCACAAGGACCTGCGCCGCAGGATGGCGCCCAACTTCACGCCGCGCACTCTCTCCACCTACGCCGCC
GTCCAGCAGCGCATCATCCTTGCCCACATCCGGAGGTTGCTAGACCGGAACCGGAGATCAGTCGCGG------------C
GCCGATACAGGTGACCTGCCGCAACATAAACCTCGAGACCTCACAGACGGTCTTCGTAGGGCCGTACCTCACCGAGGAGG
CGAGGGAGAGATTCGACAAGGACTACGCCCTCTTCAACGCGGGTCTCCTGGCAATGCCCGTGGACCTGCCCGGGTTCGCC
TTCAGACGCGCGAAGCTGGCCGTGGCGCGGCTGGTGCGCACGCTCGGGGAGTGCGTGCGCCAGAGCAAGGCACGGATGCG
CGCCGGCGGCGAGCCGGAGTGCCTCGCTGACTACTGGATGCAGGCCCTGGTGAAAGAGATCGACGCGGCCGCGA------
------CGCCTCCCGTGCACACCGATGACGTGGAGCTTGGGGGGTTTCTGTTCGACTTCCTCTTCGCCGCCCAGGACGCG
TCCACCTCTTCGCTCTGCTGGGCTGTCGCCGCCCTGGCGTCCCACCCAGACGTCCTCGCCCGCGTGCGCGCCGAGGTGTC
CGCGGTCTGGTCGCCCGAGTCCGGGGAGCCCATCACCGGCGAGAAGATCCAGCAAATGAAGTACACCCATGCGGTCGCGC
GCGAGGTGGTCCGCTACCGTCCTCCGGCGGCGCTGGTGCCGCACATTGCCGCGGAGCCGTTCCAGCTGACGGAGTGGTAC
ACGGTGCCGAAAGGCGCCATCGTGTTCCCGTCGGTGTACGAGTCGTCGTTCCAGGGGTTCGCCGCGGCGGACGAGTTCGA
CCCGGATCGCTTCTTCTCGGAGGAGCGCAGGGAGGACGCGGTGTGCAAGCGCAACTTCCTGGCCTTCGGCGCTGGCGCGC
ACCAGTGCATGGGGCAGCGGTACGCCCTCAACCACCTCGCGCTTTTCATGGCGCTCTTCGTGTCCGTCGTCGACTTCAAG
CGGGACTGGACGGAGGGATGCGACGAGCTGGTGTACGCGCCGGCCGTCATGCCTAGGGATGGCTGCGCCGTCTACCTCCA
GCAGCGTTGC----------------------------------------------------------------------
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----------------------------------------------------
>chr7B_1062
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----------------------------------------------------------------TGGCTGTGGCTGTGGC
GTTATACTACTTTCTTGTCGAGCAGCTGTCATACCGCCGCAAGAAGGGGGCCCTGCCAGGCCCGTCGTTGGTCGTGCCGT
TCCTCGGCAGCATCGTGCCCATGATACGAGACCCGGCCGGGTTCTGGGACACGCAGGCGGCCCGGGCAAAGAAGTCCGGT
GCCGGGCTGGCGGCTGAATTCGTGGTCGGCCGGTTCATCGTCTTCATCCGCGACTCGGAGCTATCCCACCGCGTGTTCGC
CAACGTCCGCCCCGACGCCTTCCAGTTCGTTGGCCACCCTTTCGGCAAGGACCTCTTCGGCA---------TCTTCTACC
TGTTCGGCGACGAGCACAAGGACCTGCGCCGCAGGATGGCGCCCAACTTCACGCCGCGCACTCTCTCCACCTACGCCGCC
GTCCAGCAGCGCATCATCCTCGCCCACATCCGGAGGTTGCTAGACCGGAACCGGAGATCAGTCGCGG------------C
GCCGATACAGGTGACCTGCCGCAACATAAACCTCGAGACCTCGCAGACGGTCTTCGTAGGGCCGTACCTCACCGAGGAGG
CGAGGGAGAGATTCGACAAGGACTACGCCCTCTTCAACGCGGGTCTCCTGGCAATGCCCGTGGACCTGCCCGGGTTCGCC
TTCAGACGCGCGAAGCTGGCCGTGGCGCCGCTGGTGCGCACGCTCGGGGAGTGCGTGCGCCAGAGCAAGGCACGGATGCG
CGCCGGCGGCGAGCCGGAGTGCCTCGCTGACTACTGGATGCAGGCCCTGGTGAAAGAGATCGACGCGGCCGCGA------
------CGCCTCCCGTGCACACCGATGACGTGGAGCTTGGGGGGTTTCTGTTCGACTTCCTCTTCGCCGCCCAGGACGCG
TCCACCTCTTCGCTCTGCTGGGCTGTCGCCGCCCTGGCGTCCCACCCAGACGTCCTCGCCCGCGTGCGCGCCGAGGTGTC
CGCCGTCTGGTCGCCCGAGTCCGGGGAGCCCATCACCGGCGAGAAGATCCAGCAAATGAAGTACACCCATGCGGTCGCGC
GCGAGGTGGTCCGCTGCCGTCCTCCGGCGGCGCTGGTGCCGCACATTGCCGCGGAGCCGTTCCAGCTGACGGAGTGGTAC
ACGGTGCCGAAGGGCGCCATCGTGTTCCCGTCGGTGTACGAGTCGTCGTTCCAGGGGTTCGCCGCGGCGGACGAGTTCGA
CCCGGATCGCTTCTTCTCGGAGGAGCGCAGGGAGGACGTGGTGTGCAAGCGCAACTTCCTGGCCTTCGGCGCTGGCGCGC
ACCAGTGCATGGGGCAGCGGTACGCCCTCAACCACCTCGCGCTTTTCATGGCGCTCTTCGTGTCCGTCGTCGACTTCAAG
CGGGACTGGACGGAGGGATGCGACGAGCTGGTGTACGCGCCGGCCATCATGCCTAGGGATGGCTGCGCCGTCTAC-----
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----------------------------------------------------
>chr5A_1169
--------------------------------------------------------------------------------
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--------------GTGCCCATGATACGAGACCCGGCCGGGTTCTGGGACACACAGGTGGCCCGGGCAAACAAGTCCGGC
ACC------GCGGCTGACTTGGTGGTCGGCCAGTTCATCGTCTTCATCCGCGACTCGGAGCTATCCCACCGCGTCTTGGC
CAACGTCCGCCCCGACGCCTTCCAGTTCGTCGGCCACCCTTTCGGCAAGAAGCTCTTTGGTA---------TCTTCTACC
TGTTCGGCGACGAGCACAAGGACCTGCGCTGTAGGATGGCGCCCAACTTCACGCCGCGCACTCTTTCAACCTACGCCGCC
GTCCAGCAGCGCATCATCCTCGCCCACATCCGGAGGTTGCTAGACCGGAACCGGAGCTCAGCCGCGACGCCGACGCCCAT
ACCCATACAGGTAACCTGCCGCAACATAAACCTTGAGACCTCACAGACGGTCTTCGTAGGGCCGTACCTCACCGAGGAGG
CGAGGCAGAGATTCGACAAGGGCTACGCTCTCTTCAACGCGGGTCTCCTGGCAATGCCCGTGGACCTGCCCGGGTTCGCC
TTCAGACGGGCGAAGCTGGCCGTGGCGCGCCTGGTGCGCACGCTCGGGCAGTGCGTACGGCAGAGCAAGGCACGGATGCG
CGCCGGCGGCGAGCCGGAGTGCCTCGCTGACTACTGGATGCAGGCACTGGTGAAAGAGATGGACGCGGACGCGA------
------CGCCTCCCATGCACACCGATGACGTCGAGCTTGGGGGCTTTCTGTTCGACTTCCTCTTCGCCGCCCAGGACGCG
TCCACCTCTTCGCTCTGCTGGGCTGTCTCCGCCCTCGCGTCCCACCCAGACGTCCTCGCCCGCGTGCGCGCCGAGGTGTC
CGCGATCTGGTCGCCGGAGTCTGGGGAGCCCATCACCGGCGAGATGATCCAG----------------------------
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----------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S----SS--S---------------
----SS---S--------S----S-----S---S------------S------------------S--------------
----S-----------------------------------S-S--SS------S-SSSSS-SS-SSS-SSSSS-------
--------------------------------------S--------------------------S---SSSSSSSS---
--------------------------------------------------------SSSSSSS---SS------------
-------SS-----------------------------------------------------------------------
S---------------S----------S-------------S----SSSS-------------------------SSSSS
SS----------------------SS----------------------------------------SSSSS---------
-------------------------------SSSS-----------------S----S----------------------
-------------------------------------------S-----SS-SSSS---------S--------------
-S----S----------------SS----S---------------------S-------------S--------------
----------------------------S-----------------SS------------SSS-----S-----------
-S-------------------------------------------------S-----S----------------------
--------------------------------------------------------------------------------
------------------------------------------------------------S-------------------
-------------------------------------------------S------------------------------
--------------------------------------------------------------------------------
---------------------------------S----------------------------------------------
------S--------------------------------------------------S------------S---------
-S------S-----------------------------------------S----------S------------------
--------------------------------S-----------------------------------------------
--------------------------------------------------------------------------------
------------------------S------------------------------S------------------------
-----------------------S--------S-----------------------------------------------
---------------------S--------S-------------------------------------------------
--------------S-------------------------S---------------------------------------
S-------------------S-----------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------S------------------------------------------------------
------S-------------------------------------------------------------------------
----------SS------------S---------------S---SSS-SSSSSS-----------------S-S------
-----------------S---------S--------------------------------------------S-------
--S--------SS-----------------------------S------------------SSS-----------S----
-------------SSSS------------S----------------------------S---------------------
-S--------SSS------S----------------------------S-----SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_249
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------AACCAAAGGGC
GTCAAAGGA-----------------------------------------------------------------------
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----------------------------------------------------
>reverse_2191
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------------------------GATCACCGCCGAGAAGATCC------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------
>forward_1811
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------CTTCAACCTCGGCCTCATGT-----------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------
>reverse_2652
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------GCACGTTCCCATCCTTCTGA-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------
>forward_2056
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------CGGGGGCTTCCTCTTCGAT------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------
>reverse_3639
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------TGCAAGAGGATTGTGTGCCA----------------------
----------------------------------------------------
