>input_sequence_48829
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----------------------------------------AGTTAAAAAGCAGCTAACTAGCTCACCTCC----ATCCAT
TGCATCTTTTCTTCCTTAATCCTCCACTAGAACCACCCACCCAACATTCATCAATGGCTTCATCTCTTAAGGCGGCCGCC
GCTGTCGCCGTTTGTGTCATGCTCGTCCTGAACCTGGGCCACCCGGCGGCAGCCACAGAATGTGACAATTGTCTGGGTGA
TTGTGTTCCCATTTGCGTCGCCTTCGCTCAAACGTCATGCAGTGGCATATGCAACGCTACACCTCCATCTCCTGCATGCC
AGACATGCAAGAATGCAGCCTTAATTGAGTGCGGTGCAACATGCTACGGCGGTTGTACCCTCTTCTGCTAGGTGAA---C
CGGCCGGCTGTGCCCTACCGCCGGCTGTATGCTGCGTGTGTGAATGTTCCTCCGCTTTG-----------TTCTTTGTTG
ATACCTCCCGCGTCGTTTTTAAGCCAT-GCACTAAATAAGCGAACGAATGTCGTTCCGTTGTTGTGTGG----GTACTAT
-GGCAAATGTTGCTTGG--TTTTATTGTTCCCCTTCATT-TCA---ACAATCATC-------ATTCAATATATATGTGTG
CAAGTGGTGTGTGCTTTGTGCTTCTTT-----------------------------------------------------
------------------------------------------------------------------------------AT
ACATGTCATGCGTCCAC-----CATAACGCCGTCATACTTAACAACACTTG-----------------------------
--AAAATATATAGTTTGATTTCACTCACGGTAGGCTTTGACATCTCTACGGCGGCGAGTTCCTGCCTTGCAGGACGAGCT
TGGGTGGCGGGGTTGTAGGATGATCCAGGCGGCAGCGT----------------TGGAGCTCGCGTGGCGGTTTTC---G
AGGGGCAACGGACGGGGTGCTTAGGGGATCATTGA---CGAAGATGTGTTTCTTTCCAGGTGCAGAGTGGGCCTCGCGTT
GGGCAACTGGACGTGGGTTCGAGAGCCTAGCTAATGGAAATTGCTAGTATATGCCCTTAACGTGTAATGCTGTTGGTTGC
TTTGGGGGCATTCGTGCTAAAAAAA--CTGGGAAAGCACGGAAGCACAACTCGAGCGAAGTCAATACACTTCGCTGGACT
GCTGCA-GATGGTGATCCTAAGGTCCAATTTGAAAGCTCACCAGCAATACCCGCCGTTAGATTAAGCAGATGACCAAAAT
GTTGCTTTCAGGCTGCCCCAGTTAATAACATTAATTAAGCAGGGCCTGTTTTGGTAGGATGACTTGTTGAGATGGATGGT
GGATACTCCCTCCGTCCCGAATTACTCGTCTCAGATTTAGTGTTAGATACATCCGTAACTTGACAAATCTAAGTCAACTA
ATTTGGAAAAGAGATAATATTTTAGTTTAGTAGGATGTTCCGATCTAATCATGAACTGATGATAGTATATGCACCCAACT
TTTGTTTATAAGGTCGAGTGGACTAATAGCAACTAGTACATGACAGGAAAATCGACTCCAAAGCTGCATATCTAAGGGGA
ATTGTATAAGGAAACAAAGTACACAGATTAGAGCATCTGCCAATAGCTCAAGCGGCTTACTTAAGACTAATGGACTAGCT
TATGTCTTTCCTTGGTGAAGCTAGATAGCACCTGGAGGGGTTAATAAA--------------------------------
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>chr1A_1_TraesCS1A01G008700
GCAAAATGCGATCATGACCATTGAAGATTATGATTTTTCTTTCTCTCAATGCAACTCACGGGCCCTTTTCCTACTCTAAT
ATCTTAGCCAGACACAACTTCCTAAGTTAAGCTAGTACTCTCCAATAATGCTAAACATACAAAGAGTTACACGCAATTAC
ACGCTGACTAGGATTTTTTGTTTCTAACTAACCACTCCCCCCCTGTTTTTCATGGGGATGAGCCCCTCCTCCCCTTAACC
TCCAATCATAAACCCATATGTTTGTAAAACCCATGTAAACTTATGTATGTGTAGATTTACTCAGTACTCTCGGTGCACAC
ACCACGTACAAGTCCAAACCAGACTGAATGCTACAAACCCACGTACAAACCTGAACACAACACTGTTACTTTTTCTAATC
TACTCATCCGGCAACCTTGATCAACTTGCTAATCCAGACAAAATAGACTTGGGCAAACACTGACTCATGATTATGCTAAC
AGCAGCTACGAGACTACGGCTCTCATGGCCAGGAGCCAGCACGCAAATGACTCGTAACCGTCCATGCTGTCTGCCCAGGT
CGGGTACACGCACGGTGTCGGTATGTTTGGTGCACATGGTGGCACGAGGTCAATGGTGGCACGGTGGCAGCCCATACGGA
GCACGGTGCCAACCACGCCGAGCTCACCATGATGCACATGGTATATACCATATCCAAGTCAATATTAGTTAAATTAATCG
ATTCGGATCCCATTAAAAAATCTTTCTAAGCGATACGGATCAGTGCTAGCCAGCTAGTTTCTCTATTTTTTTGCGAGCTG
GAGGTGGATTAATAGCTACTCCCTCCGTTCCAAATTACTCGTAGCAGAAATGGATGTATCTAGAACTAAAATACATCTAG
ATACATCCATACTTGCAATAACTAATTTGGAACGGAGGGAATAGTTAGCTAGGGTGGTTCTCAGGTAGTCACGTTGGCTG
CCTATAAATAGCATCCTGCTCAATCATATGGGAATGTACCAGTTAAAAAGCAGCTAACTAGCTCACCTCC----ATCCAT
TGCATCTTTTCTTCCTTAATCCTCCACTAGAACCACCCACCCAACATTCATCAATGGCTTCATCTCTTAAGGCGGCCGCC
GCTGTCGCCGTTTGTGTCATGCTCGTCCTGAACCTGGGCCACCCGGCGGCAGCCACAGAATGTGACAATTGTCTGGGTGA
TTGTGTTCCCATTTGCGTCGCCTTCGCTCAAACGTCATGCAGTGGCATATGCAACGCTACACCTCCATCTCCTGCATGCC
AGACATGCAAGAATGCAGCCTTAATTGAGTGCGGTGCAACATGCTACGGCGGTTGTACCCTCTTCTGCTAGGTGAA---C
CGGCCGGCTGTGCCCTACCGCCGGCTGTATGCTGCGTGTGTGAATGTTCCTCCGCTTTG-----------TTCTTTGTTG
ATACCTCCCGCGTCGTTTTTAAGCCAT-GCACTAAATAAGCGAACGAATGTCGTTCCGTTGTTGTGTGG----GTACTAT
-GGCAAATGTTGCTTGG--TTTTATTGTTCCCCTTCATT-TCA---ACAATCATC-------ATTCAATATATATGTGTG
CAAGTGGTGTGTGCTTTGTGCTTCTTT-----------------------------------------------------
------------------------------------------------------------------------------AT
ACATGTCATGCGTCCAC-----CATAACGCCGTCATACTTAACAACACTTG-----------------------------
--AAAATATATAGTTTGATTTCACTCACGGTAGGCTTTGACATCTCTACGGCGGCGAGTTCCTGCCTTGCAGGACGAGCT
TGGGTGGCGGGGTTGTAGGATGATCCAGGCGGCAGCGT----------------TGGAGCTCGCGTGGCGGTTTTC---G
AGGGGCAACGGACGGGGTGCTTAGGGGATCATTGA---CGAAGATGTGTTTCTTTCCAGGTGCAGAGTGGGCCTCGCGTT
GGGCAACTGGACGTGGGTTCGAGAGCCTAGCTAATGGAAATTGCTAGTATATGCCCTTAACGTGTAATGCTGTTGGTTGC
TTTGGGGGCATTCGTGCTAAAAAAA--CTGGGAAAGCACGGAAGCACAACTCGAGCGAAGTCAATACACTTCGCTGGACT
GCTGCA-GATGGTGATCCTAAGGTCCAATTTGAAAGCTCACCAGCAATACCCGCCGTTAGATTAAGCAGATGACCAAAAT
GTTGCTTTCAGGCTGCCCCAGTTAATAACATTAATTAAGCAGGGCCTGTTTTGGTAGGATGACTTGTTGAGATGGATGGT
GGATACTCCCTCCGTCCCGAATTACTCGTCTCAGATTTAGTGTTAGATACATCCGTAACTTGACAAATCTAAGTCAACTA
ATTTGGAAAAGAGATAATATTTTAGTTTAGTAGGATGTTCCGATCTAATCATGAACTGATGATAGTATATGCACCCAACT
TTTGTTTATAAGGTCGAGTGGACTAATAGCAACTAGTACATGACAGGAAAATCGACTCCAAAGCTGCATATCTAAGGGGA
ATTGTATAAGGAAACAAAGTACACAGATTAGAGCATCTGCCAATAGCTCAAGCGGCTTACTTAAGACTAATGGACTAGCT
TATGTCTTTCCTTGGTGAAGCTAGATAGCACCTGGAGGGGTTAATAAATTGTACTTGAATGGGGAGGAGCTTAGATGTAT
TTCGATTGAAGCAATAATGTATTTAAGTCTTCATCGTGAACTTCCGGTCATTATGCAATCGGACTCGTCCAGAACCCTAA
CTATCTTCAGTGATGCGTCACTAGTCCTGTCTCTATATAGACATCTGACATTGGAGATTCTAGCTGTACGAGAGGTTTGG
GAGTTTATTCCATAGAAGCTTCACCGTTCTCAGAATAAAGTTGCAGATTGTTTAGCGAGGTATAGTCGTACTGAACGTAG
CACAACTATTTGGCTACACTGAGGGCCTCCATGTACTGAAGACTTATCCCTCTACACTGTAACTCTGGAATTTCAAAATA
AGACCCCTTTTCACCCCGCAAAAAATAAGTTAAGTAGCAAGGCCAGATAAATTTTTCGCAGGCTGTGTAATTGCTCATTG
CGAGATGTGGCTCCCTCTATGATTGTAGCAATAGTTGTTTCATTAGCAAACTTCTTCCGGCACAAAATAGCGAAGTTACT
TTTGATGTAGCTCATCTGAAGTGTGCCATAACTCATAAGTGATGTAGCTTATCTGAAGTGCGCCACAAGTGACGATCCGT
AGAATGAGAGTGTGATTCCTGATATTCACATTGGCTACACTAACCAAACTTATTTTCTGATCCACACCGATAAGATATGA
TCCCAAACACAAAAGCAAACATACAACATAACAATAACAAACAAACTAACGGACATGGATTTTTCGATTAACAGAATATC
CCAGGCTAAAAATCCATTGATCACTTGAAAAGGAAAACATTGACAAGCTTGTAAAGTTCCTTTCACAGATACCCGTGTCT
ACAGTACCCACCTAATTTTCGAACATATTACTAGATGGAGGAGCCAGATGTAGTGTCCTGCAAAAGAAAAACCCGGTATA
ATCAACATCCCTACATATCGAGAAACCAGTCACTATGGTACAGATGGAAATTTCTCAGGAAATATAACAATTCATAATGT
TTATCCAT------------------------------------------------------------------------
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>chr1A_922
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-----------------------------------------TAGGTAGCTAAGGTGGTCCTCACGTAGTCACGTTGGCTG
CCTATAAATAGCATACTGCTCCACCATATGGGAATGTACCACT---TAAGCAGCTAGCTAGCTCATTTCC----ATCCAT
TGCATTTTTTCTTCCTCAATCCTCCA----------------AACATTCATCAATGGCTTCAGCTCTGAAGGTGGCCTCC
GCCGTCGCCGTTTGCGTCATGCTCGTCCTGAACATGGGCCACCCGGCGGCAGCCAGAGAATGCGACAATTGTCTGGGCGA
TTGTGTTGCCATTTGCATCGCCTACGCTCAAATGTCGTGCAGTGGCATCTGCAACGCCGCACCTCCACCTCCTGCATGCC
AGACATGCAAGAATGCGGCCTTAATTGAGTGCGGTGCAACATGCTATGGAGGTTGTACCCTCTTCTGCTAGGTAAA---C
CGGCCAGTTGTGCCCTAGTGCCGGCTGTAAGCTGCGTGTGTGAATGTTTCTTCGTTTTA-----------TTCTTTGTTG
ATACCTCCTGCGTTATTTCTAAGCCAT-GTACTAAATAAGCGAACGAATGTCGTTCCGTTGTTGTGTGG----GTACTAT
-GGTAAATGTTCCTTGG--TTTTATTATTACCCTTAATG-TCA---ACAATGGT-------TATTCAATATACATGTGTG
CAAGTGGTGTGTGCTTTGTGCTTCTTTGTACTCCCTCCATTCCCAAACATAACTATTGTTAGAGATTTCAATATGGACTA
TATACGGACAAAAATTGATGAACCTATACTCTAAAATATGTCTTATATATACATCCATATGTAGTTTTGTGCTTCTTCGT
ATATATCATGGGTCCAC-----CGTCAAGTCGTCATACTTAAAAGCACTTG-----------------------------
--AAAATATATAGTTTCATTTCCCTCACGGTAGGGTTTGACATCTCTACGGCAGTGAGTTGCATCCTTGCAGGACGAGCT
TGGGTGGTGGGGTTGTAGGATGATAAATGCGGCGGCAT----------------TGGAGCTCGCGCGGCGGTTTTC---G
AGGGGCAACGGACGGGGTGCCTAGGGGATCATTGTAGGCGGAGGTGTGTTTCTTTCCAGGAGCAGAGTGGGCCTCACGTT
GGGCAACTGGACGTGGGTTCGAGGGCTTAGCTAATGGAAATTGCTAGCATATGCCCTTAACATGTAATGTTGTTGGTTGC
TTTGGGGGTATTCGAGCTAAAAAGAATCTGGGAAAGCACGGAAGCACAGCTCGAGCGAAGTCAATACACTTCGCTGGACT
GCTCCGGGATGGTGATCCCAAGGTCCAATTTGAACGCTCGCTAGCAATGCCCGCTGTTAG--------------------
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>chr1A_949
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--------------------------------------------------------------------TCACGTTGGCTG
CCTATAAATAGCATCCTACTCCATCCTATGGGAATGTACCAGTTCATAAGCAGATAGCTAGCTCATCTCC----ATCCAT
TGCATCTTTTCTTCCTCAATCCTCCACTACAACCACCCACCCAACATTCATCAATGGCGTCCTCTCTGAAGATGGCCGCC
GCCATCGCTGTTTGCGTCATGCTCGTCCTGAACATGGGCCACCCGGTGGCAGCCACAGAATGCGAAAATTGTCTGGGCCA
TTGTGTCGCCATTTGCATCGCCTACGCTGAAACATCGTGCAGTGGCATCTGCAATGCCGCACCTCCACGTCCTGCATGCC
AGACATGCAAGAACGCGGCCTTAATTCAGTGCGGTGGCACATGTTATGGTGGTTGTACCCTCTTCTGCTAGCTAAA---C
CGGCGGGCTGT-----------------AAGCTGCGTGTGTGAATGTTCCTTCGTTTTA-----------TTGTTCGTTG
ATATCTCTGGCGTTGTTTCTAAGCCAA-GTACTAAATAAGCAAACGAATGTCGTTCCATTGCTGTGTGG----GTACTAT
-GGCAAATGTT---------------------------------------------------------------------
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>chr1A_952
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-----------------------------------------------------------------------CGTTGGCTG
CCTATAAATAGCATCCTACTCTATTCTATGGGAATGTACCAGTTCATAAGCAGCTAGCTAGCTCATCTCC----ATCCAT
TGCATCTCTTCTTCCTCAATCCTCCACTACAACCACCCACCCAACATTCATCAATGACGTCTTCTCTGAAGATGGCCGCC
ACCATCGCCGTTTGCGTTATGCTCGTCCTGAACATGGGCCACCCGGCGGCAGCCACAAAATGCGAAAATTGCCTGGACGA
TTGTGTTGCCATTTGCATCGCCTACGCTGAAACATCATGCAGTGGCATCTGCAACGCCGCACCTCCACGTCCTGCATGCT
AGGCATGCAAGAACGCGGCCTTAATTCAGTGTGGTGGCACATGCTACGGCGGTTGTACCCTCTTCTGCTAGCTAAA---C
CGGCCGGCTGT-----------------ATGCTGCGTGTGTGAATTTTCCATTTTTTTA-----------TTGTTTGTTG
ATACCTCCAGCGTTGTTTCTAAGCTAT-GTACTAAATAAGCGAACAAATGTCGTTCCGTTGTTGTGTGG----GTACTAT
TGGCAATAGTTCCTTGGTTTTTTACTGTTCCCCTTCATT-TCA---ACCATCATCTTACAATAATCAATATACAGGCGTG
CAAGTGGCGTGTGCTTTGTGCCTTTTT-----------------------------------------------------
------------------------------------------------------------------------------GT
ATATATAATGTGTTTGTCCAAGCGTCACGTCGTCATACTTAACAATAGAGATACAACC------------------CTTG
AAAATACATATTGTTTCGATTCCCTGACAGTAGGGTTTCACATCTCTATGGCGGTGAGTTGCAGCCTTGCAGGACGAGAC
TGGACA---GCGTCGTTGGAGCACAAATCCAGCCACGGCATTAGACATGGAGGATGGAGCTCGCGCGGCGGCGGTGCTGG
AGGGGCAATGGACGGGGTGCTCAGGGGATCACTGA---CTGAGGTGTGTTTCTTTCCAGGTGCAGAGTGGGCCTCACGTT
AGGAAACTGGACATGGGTTCGAGGGCCTAGCTAATGAAAATT---AGCATATGCCCTTAACGTGTAATGTTGTTAGTTGC
TTTGGGAGTATTCGTGCTAAAAAAAATCTGTGAAAGCATGGAAGCACAACTTGAGCTAAGTAAATACACTTCGCTGGTCT
ACTCGGGGAA----------------------------------------------------------------------
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------------------------------------------------------------------------------GA
GAGTAAATTGCATAAAACCACCACCTTCATTTCAACCATCATCTTACAATAATCAATATACAGGCGTGCAAGTGGCGTGT
GCTTTGTGCCTTTTTGTATATATAATGTGTTTGTCCAAGCGTCACGTCGTCATACTTAACAATAGAGATACAACCCTTGA
A-------------------------------------------------------------------------------
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--------------------------------------------------------------------AATACATATTGT
TTCGATTCCCTGACAGTAGGGTTTCACATCTCTATGGCGGTGAGTTGCAGCCTTGCAGGACGAGACTGGACAGCGTCGTT
GGAGCACAAATCCAGCCACGGCATTAGACATGGAGGATGGAGCTCGCGCGGCGGCGGTGCTGGAGGGGCAATGGACGGGG
TGCTCAGGGGATCACTGACTGAGGTGTGTTTCTTTCCAGGTGCAGAGTGGGCCTCACGTTAGGAAACTGGACATGGGTTC
GAGGGCCTAGCTAATGAAAATTAGCAT---ATGCCCTTAACGTGTAATGTTGTTAGTTGCTTTGGGAGTATTCGTGCTAA
AAAAATCTGTGAAAGCATGGAAGCACAACTTGAGCTAAGTAAATACACTTCGCTGGTCTACT
>chr1A_953
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------------------------------------------------------------------------GTTGGCTC
CCTATAAATAGCATCCTACTCCCTCATGTGGACATGTACCAGT---TAAGCAGCTAGCTAGCTCATCTCC----ATC---
-GCATCTGTTCTTGCTCTGTTCTTCACTAGAACCACCCA------ATTCATCAATGGCTTCATCTCTGAAGGTGGCCACC
ATCGTCGCTGTTTGCATTGTGCTCGTCCTCAACATGGGTCACCCGGCGGCAGCCACAGAATGTGAAGATTGTCTGGGCGC
CTGTGTTGCGATTTGCATCGCCTACACTGAAACGACGTGCAGCGGCATCTGCACCGTCATAACTCT------TGCATGCT
AGGAATGTAAGGACGCAGCCTTAATTGAGTGTGGTGCAACATGCTACGGCGGTTGTACCCTCTTCTGCTA----AA---C
TGGCCGATTGTGCCCTGTTGCTCGCTGTAAGCTAGGTG-----------CATGCTTGTG-----------TTCGTTGTTG
CTA-------------TTATAAGCCAT-G---TAAATAAGCGAACTAATGCCGTTGATGTGTGCA------------TGT
-GGCAAAAGTTCCTTCA--TTTTATTGTTCCCCCTCATT-TCA---ACCATCA----------GTAAATATACTTGTGTG
CAAGTTGTGTATGTTTTGTGCTTCTTC-----------------------------------------------------
------------------------------------------------------------------------------GT
ACATATCATGGGTCCA----------------------------------------------------------------
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>chr1A_953
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------------------------------------------------------------------------GTTGGCTC
CCTATAAATAGCATCCTACTCC-TCATGTGGACATGTACCAGT---TAAGCAGCTAGCTAGCTCATCTCT----AT----
TGCATCTGTTCTTGCTCTGTTCTTCACTAGAACCACCCA------ATTCATCAATGGCTTCATCTCTGAAGGTGGCCACC
ATCGTCGCTGTTTGCATTGTGCTCGTCCTCAACATGTGTCACCCGGCGGCAGCCACAGAATGTGAAGATTGTCTGGGCGC
CTGTGTTGCAATTTGCATCGCCTACACTGAAACGACGTGCAGCGGCATCTGCACCGTCATAACTTT------TGCATGCC
AGGAATGTAAGGACGCAGCCTTAATTGAGTGTGGTGCAACATGCTACGGCGGTTGTACCCTCTTCTGCTA----AA---C
TGGCCGATTGTGCCCTGTTGCTCGCTGTAAGCTAGGTG-----------CATGCTTGTG-----------TTCGTTGTTG
CTA-------------TTATAAGCCAT-G---TAAATAAGCGAACTAATGCCGTTGATGTGTGCA------------TGT
-GGCAAAAGTTCCTTCA--TTTTATTGTTCCCCCTCGTT-TCA---ATCATCA----------GTAAATATACTTGTGTG
CAAGTTGTGTATGTTTTGTGCTTCTTC-----------------------------------------------------
------------------------------------------------------------------------------GT
ACATATCATGGGTCCA----------------------------------------------------------------
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>chr1B_954
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-------------------------------------------------------------------------TTGGCTC
CCTATAAATAGCATCCTGCTCCCTCATATGGACATGTACCAGT---TAAGCAGCCAGCTAGCTCATCTCC----AT----
TGCATCTGTTCTTGCTCTATTCTCCATTAGAACCTCCCA------ATTCATCAATGGCTTCATCTCTGAAGGTGGCCGCT
GTCGTCGCGGTTTGCATCCTGCTTGTCCTGAACATGGGCCAGCCGGCGGCAGCCACAGAATGTGAAGATTGTCTAGGCGC
CTGTGTTGGCATCTGCATCGCCTACGCTGAAACATCATGCACCGGCATATGCACCGCCATAA------CTCCTGCATGTC
AGGCATGTAAGGACGCGGCCTTAATTGAGTGCGGTGCAACATGCTATGGCGGTTGTACCCTCCTCTGCTA----AACCAC
CGGCCGGCTGTGCCCTGTTGCTCGCCGTAAGCTAGGTG-----------CATGCTTGTGTTCGTTGTTACTTCGTTGTTG
CTA-------------TTATAAGCC--------AAATAAGCGAACTAATGCCGTTGCTGTGTGCA------------TGT
-GGCAAAAGTTCCTTCG--TTTTATTGTTCCACCTCGTT-TCA---ACCATCA----------GTAAATATACTTGTGTG
CAAGTTGTGTATGTTTTGTGCTTCTTC-----------------------------------------------------
------------------------------------------------------------------------------GT
ACATATCATGTGTCCA----------------------------------------------------------------
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>chr1A_962
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-CTATAAATAGCATCCTCCTCCATCCTATGGAAATGTACCAGTTCATAAGCAGCTAGATAGATCATCTCCATCCAT----
TGCATCTTTTCTTCCTCAATCCTCCACTACAACCACCCACCCCACATTCATCAATGGCGTCCTCTCTGAAGATGGCCGCC
GCCATCGCCGTTTGCGTCATGCTCGTCCTGAACATGGGCCACCCGGCGGCAGCCACAAAATGCGAAAATTGTCTGGGCGA
TTGTGTTGCCATTTGCATCGCCTACGCCGAAACATCGTGCGGTGGCATCTGCAACACCTCACCTCCACGTCCTGCATGCC
AGACATGCAAGAACGCGGCCTTAATTCAGTGTGGTGGTACATGCTATGGCGGTTGTACCCTCTTCTGCTAGCTAAA---C
CGGCTGGCTGT-----------------AAGCTGCGTGTGTGAATGTTCCTTTGTTTTA-----------TTGTTTGTTA
ATACCTCCGGCGTTGTTTCTAAGCCATCGTACTAAATAAGCGAAGGCATGTCACTCCTTTGCTGTGTGGGTACGTACTAT
-CGCAAATGTTCGCTGG--TTTTTATTGTTCCCCTTCAAGTCAACCATCATCT----------TTCAATATACATGTGTG
CAAGTGGTGTGTGCTTTGTGCTTTTTT-----------------------------------------------------
------------------------------------------------------------------------------GT
ATATATCATGTGTTTGTCCGAA-GTCATATCGTCATACTTAAGAATAGGGATACATGCGTCTTTCTCTCGACAACACTTG
AAAATACATATTGTTTCGATTCCCTGACAGTAGGGTTTCACATCTCTATGGCGGTGAGTTGCAGCCTTGCAGGACGAGAC
TGGACA---GCGTCGTTGGAGCACAAATCCAGCCACGGCATTAGACATGGAGGATGGAGCTCGCGCGGCGGCGGTGCTGG
AGGGGCAATGGACGGGGTGCTCAGGGGATCACTGA---CTGAGGTGTGTTTCTTTCCAGGTGCAGAGTGGGCCTCACGTT
AGGAAACTGGACATGGGTTCGAGGGCCTAGCTAATGAAAATT---AGCATATGCCCTTAACGTGTAATGTTGTTAGTTGC
TTTGGGAGTATTCGTGCTAAAAAAAATCTGTGAAAGCATGGAAGCACAACTTGAGCTAAGTAAATACACTTCGCTGGTCT
ACTCGGGGAA----------------------------------------------------------------------
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------------------------------------------------------------------------------GG
GAGTAAATTGCATAAAACCACCACCTTCATTTCAACCATCATCTTACAATAATCAATATACAGGCGTGCAAGTGGCGTGT
GCTTTGTGCCTTTTTGTATATATAATGTGTTTGTCCAAGCGTCACGTCGTCATACTTAACAATAGAGATACAACCCTTGA
A-------------------------------------------------------------------------------
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--------------------------------------------------------------------AATACATATTGT
TTCGATTCCCTGACAGTAGGGTTTCACATCTCTATGGCGGTGAGTTGCAGCCTTGCAGGACGAGACTGGACAGCGTTGTT
GGAGCACAAATCCAGCCACGGCATTAGAC-------ATGGAGCTCGCGCGGCGGCGGTGCTGGAGGGGCAATGGACGGGG
TGCTCAGGGGATCACTGACTGAGGTGTGTTTCTTTCCAGGTGCAGAGTGGGCCTCACGTTAGGAAACCGGACGTGGGTTC
AAGTGCCTAGCTAATGAAAGTTACTAGTACATGCCCTCAACGTGAAATGATGTCAGTTGCTTTGG---------------
--------------------------------------------------------------
>chr1A_973
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------------ATCCTGCTCCATCCTATGGGAATGTACCAATTCATAAGCACCAAGCTAGCTCATCTCCATCCAT----
TGCATCTTTTCTTCCTCAATCCTC------AACCACCCACCCAACATTCATCAATGGCGTCCTCTCCGAAGATGGCCGCC
ACCATCGCCGTTTGCGTCATGCTCGTCCTGAACACGGGCCACCCGGCGGCAGCCACAGAATGCGAAAATTGCCTGGGCGA
TTGTGTTGCCATTTGCATCGCCTATGCTGAAACATCATGCAGTGGCATCTGCAACGCCACACCTCCACGTCCTGCATGCC
AGGCATGCAAGAACGCGGCCTTAATTCAGTGCGGTGGCACATGCTACGGCGGTTGTACCCTCTTTTGTTAGCTAAG---C
CGGCCGGCTGT-----------------AAGCTGCGTATGTGAATGTTCCTTCGTTTTA-----------TTGTTTGTTG
ATACCTCCGGCGTTGTTTCTAAGCCAT-GTACTAAATAAGCGAACGAATGTCGTTCCATTGTTGTGTGG----GTACGAT
-GGCAAATGTTCCTTGG--TTTTCATTGGTCCCTTCATT-TCAACCATCATCT----------TTCAATATACATGTGTG
CAAGTGGCGTGTGCATTTTCCTTCTTT-----------------------------------------------------
------------------------------------------------------------------------------GC
ATATATCAAGTGTTTTTCCGAT-GTCACGCCGTCATACTTAACAA-----------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S------S------S----S----------------
---------------------S----------------------S-S---------S--------S--------------
----------------S--------------------------------------------------S----S-------
--S-----------S------------------S-------------------------------------------S--
-------S--------S------S---------------------------------S---------S------------
-------------------------------------------------------------------------S------
-----------------SS--------------------------------S--S-------------------------
--------S----S----S----------S--------------------------------------------------
-----------S------------------------------------------------------------S-------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------S-
----S-----S------------S-S------------------------------------------------------
----------------S-----S-----------S-------------------S-----S-S-----------------
-------S----------------SS-S-----S-------------------------------S--------------
----------------------------------------S--S-------------------------------S----
-----------------------S-----------------------S---------------------S----------
--------S-----------------------------------------------------------------------
---S-S------------S---------------S----S-S------S-----S-----SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
----SS---S----S--S-SS----S-SS-SSS--SS-SSS-SSSSSSSSSS-SSSS-SSS-SSSSS-S-SSSSS---SS
SSSSSS-SSS-SSS-SS-SSS-SSSSS-SSS---S-SSSS-S-SSS--SSSS---SSSSS--SSSS-SS-SSS-SSSSS-
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S----S---
--SSSSSS------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------
>forward_499
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------C
AGCAGCTACGAGACTACGG-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------
>reverse_2325
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----CTTTCAGGCTGCCCCAGTTA--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------
>forward_509
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------GAGACTACGGCTCTCATGGC---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------
>reverse_2356
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------TAAGCAGGGCCTGTTTTGGT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------
>forward_1154
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------TGTCATGCTCGTCCTGAACC----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------
>reverse_3048
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------ATTTGGCTACACTGAGGGCC-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------
