>input_sequence_48826
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---------------------------------------------------ATGGAGATGGCCAAGCCGCCTCGCCCGCG
CGGCTTCAAGGTCGGCCGCCGGCCGACGGCCGCCTCCCGGAAGGACCACGGCGGCGGGGGCGTTCGCCAGCCGCCGCGT-
-----GGCCCTGCGCGCGCGCACCTACCGCCGGCCTCGCCATCCTCGGCCGCGGTCCCTGCGGCTGGCCTCCTGCCGCGT
GCCTCGGT------------------------------------------------------------------------
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---------------------GCCCTCGCACACGGCCCCTGAGCCAAGCCTCCTCCCGCCGGCCCCGGCCCCCTCGCGCA
CCGCGCCTGCGCCCGGCGTCCCCCCGCCGGAATGGGTGCCTTGGTACATGGCCCCCGCGTCCTGGGACATGACCCATCCG
CCCCGCCTCCCCTCGCAGGCCACTCCCCCTGCCCCCGACCTCCTCCCGCTGGCCTCGGCGCCCTCCCACACCACCCCTGC
GCTCGGCCTCCTCCT------------GCCCTCTACCGCGCCCCCTGAGCCCTGCAAATACTACACCGGCATGGTGAGTT
TCACCTGCCATCTAATTTCTGAACCGCTGATT----TGATCTGTTCTATGCAACCGCTAATTAATTTGATCTCTTCTGTG
CAGCTCTTAGGTCCGCGTGTCTATGCTCGTGATCTCTCTCCGCCCGCAGCACCCGCCACGAGCGTCGCTACAGCAGCCTT
CTTACCGCCGCCGCCGACAGCTAACCCCGTGAGTAGCTGCCTTCCATGTA------------------------------
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--------------------------------------------------------------------TTGATCTCATAC
ATATCTTTGGTGTCCCCAAGATCAAAATGTATCGTATGAGCTGCCTTAAGATCATCAGTTGGGCTCCTGCATTTTGTGTT
TATGAGTGCTCGGTAGTGGCAACTCTCCC-GTTGCTGGGCGACAATGATCACTTCCATTGCTTGTGATGTCTTTCAACAT
CACCTTAAGATGGAATTCCTTTCTTTGGGAAGGTGCCATGGCCTGGAATATCAATGAGCAAGGAAACATTAATACTGGAA
AAGAAATAGTGGCTGCAGCCTGCAGCAATGAAAGTTATGATGATATGTGAATACATGAAATAACTTGCTATTTTTGCCTT
CTTCGACCACGCACTATCCTGGTCGATGGTACCTTTCTCATTATTCCACCTGGCACCTGTCACCTTTTGCATATATTTTT
CCATAATATGCCATAATCATTGTTTATTTCATCCTATTTTATTTTTACTTGGACCTCATTGTAATCAAGATTTTATCCTG
TCTTGAAACCTTGCTAAAACCTCATAATATTACCATGGAGTTCAAATGGGTGTTTGGCTGGTTCCCTTGGCGCTCTAATA
ACTCGGTCACTAGCATAGCACTATCTGTCATCATTCCATTTCACAGTTATTTTTCATATACGCTATGCATAGATTAATTA
AACAATGAAACAGACTACAAAAACTCGATATTTTCAGTACAAAATGCGATTGTTTCTTACGCTTATTTATTTTATATGTT
CTCAGCTACTTGTATGCAAGGAGTCCATGGAAGGTTGCAAATATGTGAATATGGAGATGAGCGATGAAGAAACGGAAGAG
GAGTATGAATCACGCAAGAAGGCGGAGTGGTGCTGTGGAGCCTGA-----------------------------------
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>chr5B_1_TraesCS5B01G425700
TAATCTTATGAATAGTCAAAGCCAATTTTGAAAAACACATTAGGCCCCATATATATAGATGGAGGGAGTATATACATCCA
TATGTATGTAGTTTGTAATGCAATCTCTAAAAATACTTGTACTTATGAACAGTCAATACGCTCGATTAACGCTTTAAATT
ATAAAACGATCTCGCAAGCCGTGGCAGTAAATATATTGCCATAAACATTCGACCAAGACAGAGAAGCCATTAAATAGTCG
AGGATTCGACAGTGACCCCGCATGGTGGCAGC------CAGAGCCAGGCCACTCGGTCACACTCTGGCCAGTAGGCACCA
CTCCGGTCCTTTTCAGCTCAGCTCAGCTCAGCTCGTCCTCTCTTTACTGTTTCTTCT----CTTCCTCCTCTCTTCCCCT
CGAAGCCTCAGCCATGGAAGACAGCTTCAGCCATGGAGCCATAACTCCATCCATCCCCA-AGAGCTTTCCCCTCAAGCTG
GACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCCAAGATCCGCGTCG
AAACGAGCCATGGGAGGTAGTATGCTGGACTCCGTTGTTGTAAGAGGTCGTTGTGTTCTTCAGCTCACGGATGGGAGGCG
TGGGGCTGACAGAGGGCGCGGCGAGGGGCACATTGGGCGTCTGACGGGTGGGTCCTCGGATAAACCCACCCATCCCCAAT
CCCTCAATTCCCCTCCCCCGATCCCCACCACCGGCGCCAGCGGCTAGGGTTATGGAGATGGCCAAGCCGCCTCGCCCGCG
CGGCTTCAAGGTCGGCCGCCGGCCGACGGCCGCCTCCCGGAAGGACCACGGCGGCGGGGGCGTTCGCCAGCCGCCGCGT-
-----GGCCCTGCGCGCGCGCACCTACCGCCGGCCTCGCCATCCTCGGCCGCGGTCCCTGCGGCTGGCCTCCTGCCGCGT
GCCTCGGT------------------------------------------------------------------------
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---------------------GCCCTCGCACACGGCCCCTGAGCCAAGCCTCCTCCCGCCGGCCCCGGCCCCCTCGCGCA
CCGCGCCTGCGCCCGGCGTCCCCCCGCCGGAATGGGTGCCTTGGTACATGGCCCCCGCGTCCTGGGACATGACCCATCCG
CCCCGCCTCCCCTCGCAGGCCACTCCCCCTGCCCCCGACCTCCTCCCGCTGGCCTCGGCGCCCTCCCACACCACCCCTGC
GCTCGGCCTCCTCCT------------GCCCTCTACCGCGCCCCCTGAGCCCTGCAAATACTACACCGGCATGGTGAGTT
TCACCTGCCATCTAATTTCTGAACCGCTGATT----TGATCTGTTCTATGCAACCGCTAATTAATTTGATCTCTTCTGTG
CAGCTCTTAGGTCCGCGTGTCTATGCTCGTGATCTCTCTCCGCCCGCAGCACCCGCCACGAGCGTCGCTACAGCAGCCTT
CTTACCGCCGCCGCCGACAGCTAACCCCGTGAGTAGCTGCCTTCCATGTA------------------------------
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--------------------------------------------------------------------TTGATCTCATAC
ATATCTTTGGTGTCCCCAAGATCAAAATGTATCGTATGAGCTGCCTTAAGATCATCAGTTGGGCTCCTGCATTTTGTGTT
TATGAGTGCTCGGTAGTGGCAACTCTCCC-GTTGCTGGGCGACAATGATCACTTCCATTGCTTGTGATGTCTTTCAACAT
CACCTTAAGATGGAATTCCTTTCTTTGGGAAGGTGCCATGGCCTGGAATATCAATGAGCAAGGAAACATTAATACTGGAA
AAGAAATAGTGGCTGCAGCCTGCAGCAATGAAAGTTATGATGATATGTGAATACATGAAATAACTTGCTATTTTTGCCTT
CTTCGACCACGCACTATCCTGGTCGATGGTACCTTTCTCATTATTCCACCTGGCACCTGTCACCTTTTGCATATATTTTT
CCATAATATGCCATAATCATTGTTTATTTCATCCTATTTTATTTTTACTTGGACCTCATTGTAATCAAGATTTTATCCTG
TCTTGAAACCTTGCTAAAACCTCATAATATTACCATGGAGTTCAAATGGGTGTTTGGCTGGTTCCCTTGGCGCTCTAATA
ACTCGGTCACTAGCATAGCACTATCTGTCATCATTCCATTTCACAGTTATTTTTCATATACGCTATGCATAGATTAATTA
AACAATGAAACAGACTACAAAAACTCGATATTTTCAGTACAAAATGCGATTGTTTCTTACGCTTATTTATTTTATATGTT
CTCAGCTACTTGTATGCAAGGAGTCCATGGAAGGTTGCAAATATGTGAATATGGAGATGAGCGATGAAGAAACGGAAGAG
GAGTATGAATCACGCAAGAAGGCGGAGTGGTGCTGTGGAGCCTGATCTATGTGTTGTTGACTCGTAGGATGTGTTTGTGT
TCACTCTCAAGATTTC---ATGTGCTTGTGTTTCCTCTCATATACGTTGGGCCGGGTGTTTCTCCTAAAAAGTTTTGTCC
AGAGTTAAGTAGATGCATGCCCAGAGTTATTTTTTGTCCAAAGTTTCCTCTGGGAGATTAGAAAGCATGTCTATGTTCTC
ATCATTTTTCTGAATCTGTAGAAACCAAGTTTCAGTGGGAAATTTGATGTGGATGAGAAAAATCTTTACTGTTGC-TTCC
ACTCTTTTGAATTTTATTACAGCTCAGAACAAATCTTTTGAATTTTATGCATTTTGCAATTTGATCACATCCTCCCTCCG
TCCGAAAAAGTTTGTCCCTCAAATGGATGTATCTCATCATTTGAGGGACAAGCTTGGGACAAGCTTTTTTGGACGGAGTA
CATATTATTGGTTCTCTGCACGTCTAAGCTGAATGGTATACC--TTTTTAATGTTTATTATGTAATGTGAAATGGCATTT
AATAAATTTACACAGCCCCC--GCTAATTTTCTTGACAGAAATCCACTCTTTTCCAATCCGACTGGACCACCCTAGTCAG
GAACCAAGGAATTACATCAAAAGAGCCTCTCTTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNAAGAGAGGTACTTCCTGTAAAGAAATATAAGAGTGTTTGGATCACTACTTTAGT
GATCTAAACACTA
>chr5D_89
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--------TAGTTTGTAATGGAATCTCTCAAAATACTTATATTTATGAACAGTCAATACGCTGGATTAACGCTTCAAATT
ATAAAACGATCTCGCAAGCCGTGGCAGTAAATATATTGCCATAAACATTCAACCAAGACAGAGAAGCCATTAAATAGTCG
AGGATTCGACAGTGACCTTGTCTAATGTCTATGCAGCACAGGGGCAGGCCACTCGGTCGCACCCTGGCCAGTAGGCACCA
CTCCGGTCCTTTTCAGCTCAGCT----------CGTCCTCTCTTTACTGCTTCTTCTTCTTCTTCCTCCTCTCGTCCCCT
CGAAGCCTCAGCCATGGGAG--------------------------CCATCCATCCCAAGAGAGCTTCCCCCTCAAGCTG
GACCTCTGCGCGCCGCGCACCCCCGCCCGCGCGGCTGTCTCAGTTGATTTAACCCCAATGCCTT----------------
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----GAGACATGGGAGGTCTCACTCCGTGCGGCAACGCAGC------------------------CACGGATGGGAGGCC
TGGGGCTGACAGAGGGCCCGGAGAGGGGCGCGTTGGGTGTTTGACAGGTGGGCCCCCGGATAAACCCATCCGTCCCCACC
TCCCAATTCCCCTCCCCCCGATCCCCACCAC---------CGGCTAGGGTTATGGAGATGGCCAAGCCGCCCCGCCCGCC
------------CGCCCGCCCGCGAGTGGTCGCCTCCCGGAAGGACCACGGCGGCGGGGGCGTTCGCCAGCCGCCGCGTG
GCCACGGCCCTCCGCGCGCGCGCCTACCGCCAGCCTCGGCGCCCGCGCCCGCGCCCTCTGCGTCCGGCCTCCTCCCGCCG
GCCTCGGCGTCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGGCCTCCTCCCGCTTACCACGGCGCCCTCGACCGCGACCCCTGCGCCCGA
CCTCCCCCCGCGTACGCCAGCGCGCTCGCACTCGGTCCCTGAGCC-----------CGCCCGCCTCGGCGCCCTCGCCCG
CCGCCCCTGCACCCGACATCCCCCCGCCGGACTGGGTGCCCTGGTACATGGCCCCAGCGTCCTGGTACATGACCCATGAG
CGCGCTCA---------------------------------CCTCCCGCTGGCCTCTGCGCCCTCACACACGGCCCCTGC
GCCCGCCCTCGTCCTGCCGCCCACGGCGCCATCGACCGCGACCCCCGAGCCCTGCG---ACTACAGCGCCATGGTGAGCT
TCACACATCTCCTCACCTGCCCATCCAGAGTCTGAATGATTTGTTCCGTGCAACCAATAAA----TTGATCTCTTCTGTG
CAGCTCTTGGGTCCACGTGTATATGCTCGTCCTCTTCCTCT------------CGCCACCAGCGTTACTACAGCAGCTCT
CTTACCGCCACCT---ACAGCTAACCCTGTGAGTAACTGCCATGCGTTGCTCTCCTTTCACAAACAAGTTCGTAACAATG
AAATGCTCATCGCTATCAAACGTTCCACCACATTGAACCGGCAAAAACATCATATCACTGACTAGGTTTTTTCTTCTTTC
TTGGTGTAAGACTTGAAACTTGACTGAGTTCTCTGAGCCAAATTGGTTAGCTGATCTTGCACGAGTTCAAAGTCTTGAGG
TTTTGGCATTTCCATCTGTGAGCATTGTTGGGCTCCTGCATTTTGGGTTAATAGGAGAGTCAGATACTTTGATCTCATC-
--ATCTTTGTTGTCCCCAAGATTAAAATTTATCGTATGAGTTGCCTTAAGATCATCAGTTGGGCTCCTGCATTTTGTGTT
-ATGTGTGCTCGATTGTGGCAACTCTCCTGGTTGCTGGACGACAATGATCACTTCCATCGCTCATGATGTCTTTGCACAT
CACCTTAAGATTGAATTCCTTTCTTTAGGAACGTGTCATGGCCTGGAATATCAAAGAACAAGGGAACATTAATACTGGAA
AAGAAATAGTGGCTGCAGCCTGCAGCAATGATAGTTATGATGAGATGTGAATACATGAAATAACTTGCTATTTTTGCCTT
CTTCAACCATTCACTATCCTGGTCGATGGTACCTCTCTTATTATTCCACCTGGCACCTGTCACCTTTTGCATATATTTGT
CCATAATATGTTATAATCATTATTTATTTCATCCTATTTGTTGA----------CTCATTGTAAACAAGATTTGTCCTCT
CTTTGAAACCTTGCGAAAACCTCATAATA-TACCATGGAGTTCAAATGGGTGTTTGGCTGGTTCCCTTGCCGCTCTAATA
ACTCGGTCACTAGCATAGCACTGTCTGTCATCATTCCATTTCACAGTTATTTTTCATATATGTTATGCATAGATTAATTA
AACAATGAAACAGACTACAAAAACTCGATATTTTCAGTACACAATACGATTGTTTCTTACGCTTATTTATTTTATATGTT
CTCAGCTACTTGTATGCAAGGAGTCTATGGAAGGTTGCAAATGTG--AATTTGGAGATGAGCGATGAAGAAACGGAAGAG
GAGTATGAATCGCGCAAGAAGGCGGAGTGGTGCTGTGGAGCCTGATCTATGTGTTGTTGACTCTCAGGATCTGTTTGTGC
CCACTCACAAGATGTCTTGATGTGCTTGTGTTTCCTCTCAGATACGTTGGGCCGGGTGTTTCTCCTAAGAAGTTTTGTCC
AGAGTTAAGTAGATGCATG-----------------TCCATAATACTCTGTTGGAGGTTAGAAAGCATGTATATGTTCTC
ATCATTTTTCTGAATCTGGTGAAACCAAGTTTTCCTGGGAAATTTGATGTGGCTGAGAAAAATCTTCACTATGGCTTTCC
ACTCTTTTGAATTTTATTACAGCTCAAAAAATATCTTTTGAATTTTATGCGTTTTGCAATTTGATCCCAT----------
-------------------------------------------------------------------------------A
CATATTATTGGTTCTCTGCACGTCTAAACTGAATGGTATACCTTTTTTTAATGTTTATTATGGAATCTGAAATGGCATTT
AATAAATTCACACAGCCCCCTTGCTAATTTTCTTGACAGAAATCCACTCTTT----------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS------------S-------S---------S--S--------------------S-----------S-----
--------------------------------------------------S-----------------------------
-----------------SS-SS-SS--S-SSS---------S-S--------------S---S-----------------
-----------------------SSSSSSSSSS----------------S-----------------------S------
-----------------S--SSSSSSSSSSSSSSSSSSSSSSSSSS-----------S---------S------------
----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS---S----------SSS-SS-S-SS-SS-SSS-SS-SSSSSSSSSSSSSSSSSSSSSSSSS--------------S
-----------------S---S-------S-S-----S--S----S------S--S------------S--S------SS
S--SS-S-S---SS-----------------SSSSSSSSS-------------------------------S-------S
SSSSSSSSSSSS--S-----S--SSSS--S--------------------------------------------------
-----------S---------S---------S------S-SS--S--S-----SS-S-----S-S--------S----SS
-------S------------------------------------------------------------------------
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-----------------------S-------S---S---------SSSSSSSSSSS----S---S----S-------S-S
----S-----S----S-S-------------S--------S--------------S---------S-----------SS-
-S-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------S--------S-----SS-------
--S--S----S-------------------S--S------S----S---------SSSS------S--S---------S-
----SSSS-SS--S-SS-SSSS-S-SSSSS-S--------S-----SS-------SS---SSSSS---------------
--------S-----S-----S---------SS---SS---SSSSSSSSSSSSS------S-----SS----------SS-
---------S--SSSS-----------S-------S-----S-S-S-SSS------------------------------
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------------------------------------------------------------------------------SS
SS-------S------------S-----S-----------S---------------------------------------
S---S-------S-S-------------S---------S-------------------S---SS----------SS----
-----------S--------------S----S---S------------------S--S-----S----------------
-------------------------------S-----------S------------------------------------
----S----SS-----------------------S---S---------------------------------------S-
----------SS---------S-----------------SS-SSSSSSSSSSSS----------S--------SSS-SSS
SS------------S--------------S---------------------------------------S----------
----------------------S-------------------------------------S-S-----------------
-----------------------------------------S---S----------------------------------
-------------------------S----------------S--SS---S-----------------------------
-----------S---------------------------------------------------SS-----S--------S
S-----S------S--------------------------S---------------------------S-----------
-------------------SSSSSSSSSSSSSSSSS----S-S-SSS--S-S----S-------------S---------
------------------SS------------SSS-----------------S-------------S---S-S-------
--------------------------S--S-S------------------S---------------S---SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
---------------------------S----------------------------------S---S-------------
--------S-------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS
>forward_422
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--AAGCCTCAGCCATGGAAGAC----------------------------------------------------------
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>reverse_1712
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-------------------------------ATGGGTGCCTTGGTACATGG-----------------------------
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>forward_961
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-------------------------------------------------------------AAACCCACCCATCCCCAAT
C-------------------------------------------------------------------------------
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>reverse_3641
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----------------------------------------TTGAGGGACAAGCTTGGGAC--------------------
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