>input_sequence_48812
--------------------------------------------------------------------------------
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------------------------------------------------------ATGAGCACCAAAGCCATTTCCCTCTA
TTTCTGTGTACCTGCTGCATTTCTGCTCTTCTTTGCCCATCTCAATAACCCAACCACTTCATTCCTTCGAGCCCTGCTTG
ATCTTGCAACACCATCCTTTCCATTTAATTTGCTCACAGTTCATTATTTTTCTAACTATCATTGCCATCGTGGTGCATAC
AACCCGCTTTGCAATGATTTCCCTCCGGACTTCCCACCGCCTGACACCGCAGCAACATCGATCTTCTGTGTCGATCCCAA
TGGCTGCTGTGACTTCACCACGGTGCAGTCCGCGGTTGATGCTGTGCCAAGATCCAGCCAAAAGAGGAATGTTCTGTGGA
TCAATAAGGGCATCTACCTGTAAGCAATTTTCCTTTGATCAGG---CTGGCAGCACTCCATGTCCAAAGTGCAAAATTGA
TAACTGTGCTGTTAATGAAGCTGCC---TTGTTACAGTGAGAAAGTGACAGTCCCTGCTACCAAGCCCAACATCACATTT
CAGGGGCAGGGATTTGATCTGACGGCGATCATGTGGAATGACACAGCTAACTCGTCACATGGAACCTTCTACAGCGCTTC
AGTTTCTGTCTTCGCCACCGGCTTTGTCGCGAAGAACATCAGCTTCATGGTAAGTTGGTAACTACAAACATCGCAGATCA
TGCTTCAGTTAAGCCACACTGCATGCACTTTGAGTAGCACTGTAACTCTGTTAATCATCCTGACACTAGAATGTAGCACC
AATTCCAAGACCCGGTGATGTCGGTGCTCAGGCAGTCGCTCTGAGGATCGGTGGTGACCAGGCGGCATTCTGGGGCTGTG
GCTTCTTTGGGGCACAAGATACACTGCACGATGACCGGGGCCGGCATTACTTCAAGGAATGTTTCATTCAGGGCTCCATT
GACTTCATCTTCGGAGATGCTAGGTCACTCTATGAGGTGAGTCAAAGTTATTTCTCAAGAACTGGAAGAAAAAGCACCGA
GTTTGTTCACTAATTGCTTGCTTCCACATGTGCACTCCTCAGAACTGCAGATTGATTTCCATAGCAGATCCTGTGCCTGC
AGGGGTGAGATCCATCACTGGTTCAGTTACTGCGCATGCCCGGGAATCCAACAAAGAAAACACCGGCTATTCATTTGTCA
ACTGCAGCATCGGCGGCACCGGGTGGATATGGCTCGGGCGAGCATGGAGACCTTACTCCCGTGTTGTATTCGCATACACT
ACGATGTCAAATATCATCGCCTCCGATGGATGGAATGATTGGAATGATCCTTCAAGAGATCAGTATGCCTCTCCTGAACT
GCTAGTGTTTTCTGGAATCAATTCAGAATGCACACTAACATCGGTTTGTTCTATGATTTCCATTGCCAGGAGTGTGTTTT
ATGGAGAGTACAAGTGTACAGGCGATGGCGCACACCTGGCGGGCAGAGTGCCGTATGCTCTTGAGCTCAGCGACGTGCAA
GCATTGCCTTACTTGAACACATCTTTTATTGACGGTGATCTATGGCTGAAACCATACTGCGACTCACTAATATCTGCATG
A-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------
>chr4A_1_TraesCS4A01G028000
GTAAGTTTACTAATA-CACAGTGGGGTTCCAGAAACTGGGCGGTTACTTTTATTGCTTCACAACAAATTACTGGGATTCC
AGGAACTGATGGATTACCAGTCCCCTGCTTGTCCGGATTCCTAAACTGGGGGACTGGACTT-CATTAGATGCTGATTTTT
CCTGTTCTGTATGTGCTGCATGCCTTTGTCAAAATCCGTGT--GGTTGAACGTCCCTAAAGTCATTCCACCTGTGTCCAC
AGGTGGCACTGGGAAGAAAGCATTTACGGCAGCTTGAGCTTGTCAAACCTAGTCATTATTA--------TAGATAAAAGT
GTCCACTTAGAATTCGTCTAGCTTTGGTGTTTTGACATCTGTTGCGAGATCTTGTGCCCTCTGTGATTTATCTGAACATG
CACATTAAATGCATCTGTGCAAGTCTTGGTTTAGATATGTCTGGTCATGCAAATTGTGGCAGTTGTTGCCCAGTGGTTGG
CTGGTCCTATGGGCTATGGCAGGCACACTATGAACCTTGTTTGAAGCAATATCATCTATAGCCTGTTTATTTCTGTCTTG
TGATGGTGACCTGCTATTTCTTTGGTTTACAACTTACTGGGATTAAGGTAACAAAATATATTCGCTTTTTGCCGAGC---
-------TCTTATATTTTCCTTTCTTCTGCTTTTATAGTTAAG-------------------------------------
------------------------------CACACCTCTTTCGCATGATCTCATGGT--CCTCTTTTGGATATGAGCATT
TGCTAATTGTCAGGGCGAACCAATCTTTGAAGCAACTACTTGATCAGATAATGCCTGGATTCTGACAGTGACATGAACCC
ACCTTTTCACTTCAGGAAATGCTTCATTGTTTAGATGATAGCTGTTCCTGTGGGCAACTGGCTTGTGC-GGCGTCTCAAG
CTTGAAGAAAGGAGATCGGTTGTTTGCAAGGCATGCAATTTAGGCTGCTTCTTAAAGCACATTCGATCCTGTTAAAATGC
CCTG--AGACCCATCTCATATTCCGAAGCAATAGTGAGACTTCCAGCCATACAAATGAGCACCAAAGCCATTTCCCTCTA
TTTCTGTGTACCTGCTGCATTTCTGCTCTTCTTTGCCCATCTCAATAACCCAACCACTTCATTCCTTCGAGCCCTGCTTG
ATCTTGCAACACCATCCTTTCCATTTAATTTGCTCACAGTTCATTATTTTTCTAACTATCATTGCCATCGTGGTGCATAC
AACCCGCTTTGCAATGATTTCCCTCCGGACTTCCCACCGCCTGACACCGCAGCAACATCGATCTTCTGTGTCGATCCCAA
TGGCTGCTGTGACTTCACCACGGTGCAGTCCGCGGTTGATGCTGTGCCAAGATCCAGCCAAAAGAGGAATGTTCTGTGGA
TCAATAAGGGCATCTACCTGTAAGCAATTTTCCTTTGATCAGG---CTGGCAGCACTCCATGTCCAAAGTGCAAAATTGA
TAACTGTGCTGTTAATGAAGCTGCC---TTGTTACAGTGAGAAAGTGACAGTCCCTGCTACCAAGCCCAACATCACATTT
CAGGGGCAGGGATTTGATCTGACGGCGATCATGTGGAATGACACAGCTAACTCGTCACATGGAACCTTCTACAGCGCTTC
AGTTTCTGTCTTCGCCACCGGCTTTGTCGCGAAGAACATCAGCTTCATGGTAAGTTGGTAACTACAAACATCGCAGATCA
TGCTTCAGTTAAGCCACACTGCATGCACTTTGAGTAGCACTGTAACTCTGTTAATCATCCTGACACTAGAATGTAGCACC
AATTCCAAGACCCGGTGATGTCGGTGCTCAGGCAGTCGCTCTGAGGATCGGTGGTGACCAGGCGGCATTCTGGGGCTGTG
GCTTCTTTGGGGCACAAGATACACTGCACGATGACCGGGGCCGGCATTACTTCAAGGAATGTTTCATTCAGGGCTCCATT
GACTTCATCTTCGGAGATGCTAGGTCACTCTATGAGGTGAGTCAAAGTTATTTCTCAAGAACTGGAAGAAAAAGCACCGA
GTTTGTTCACTAATTGCTTGCTTCCACATGTGCACTCCTCAGAACTGCAGATTGATTTCCATAGCAGATCCTGTGCCTGC
AGGGGTGAGATCCATCACTGGTTCAGTTACTGCGCATGCCCGGGAATCCAACAAAGAAAACACCGGCTATTCATTTGTCA
ACTGCAGCATCGGCGGCACCGGGTGGATATGGCTCGGGCGAGCATGGAGACCTTACTCCCGTGTTGTATTCGCATACACT
ACGATGTCAAATATCATCGCCTCCGATGGATGGAATGATTGGAATGATCCTTCAAGAGATCAGTATGCCTCTCCTGAACT
GCTAGTGTTTTCTGGAATCAATTCAGAATGCACACTAACATCGGTTTGTTCTATGATTTCCATTGCCAGGAGTGTGTTTT
ATGGAGAGTACAAGTGTACAGGCGATGGCGCACACCTGGCGGGCAGAGTGCCGTATGCTCTTGAGCTCAGCGACGTGCAA
GCATTGCCTTACTTGAACACATCTTTTATTGACGGTGATCTATGGCTGAAACCATACTGCGACTCACTAATATCTGCATG
AAGTCATAAATTCCCAGTTTAAAGTTATCTAGCATTGTATCACAGACAAGCAAAAGGAACAAGTTAGCACAAGTCCATTT
GTTGGATTCTCTCACATACCATATAGTACATTAAATCACCTGTGAAAAGTACATCATTTGGAATTTCAGAAATACTCCCT
CCGTCCCACAATATAAGAACGTTTTTGACACTAGTGTAGTGTCAAAAACGTTCTTATATTTTGGGACAGAGGGAGTATAT
TGGTTTCGACAAAGATTGGATTGTCCTCTGTCACTAATCTACATTTACTTGACCTGGTCATTGTAGCTGTAATATGCATA
TATGAAACAAAAAACAGTCATGGTGAAAGAAATGATCTGCACATTAGATCTAATAAACCAATGAGAGAAAAGG-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----ATACATGTCTTTAAGATAGGTTCACAAGTGTGAGAAGAAAGTTCACAGTTGCAAATCGTTCTGAATACACATTTGG
TTGTTGCCTGCTATCTACTCTGTGCTTTCGGTAACATCAGCTGAACAGTTCATTTACATTGCATGAATAAC-------TG
GTGAGGTGGAAGAGAGACAAAGGAAAAAAGAGGTCTTGCCTTCTCTTAGCCAAGAGATTATCCCTTATG-AAGAAAGATA
AGAGATGTGTCATCATTATATGGGATTTTTTTTGTCTTCACATGTTTTCTATTTTTTTAATCATTTCATAATTTCAGGGT
CTTGTAAATTTGAATGGTAGAGATAACAATTGACTATAATACATTGTATAACATGTACTATTGCTTTCTCTAGATGATGT
GAAATACATAAGGAAAAGATTTCATCGATAATTGTATATGCCATACATAAATCAAAGTAACGCTACGATAGTTACTCATA
ACACGAAAATGCAATTTCTAGCT-ATTGCGAGTAATAGTGGTCGCTCGCTC----ACACGGTGCCCTGTTGTGGTCCAGG
CCAATAGCTAAACTTGCCTACACACTTTTTTTGTTTATATGATTTTTGAAATGTGAAAACAATTC
>chr4D_1
GTAAGTTTATTAAATGCACAACGGGGTTTCAGAAACTGGGTGGTTACTTTTATTTCTTCACAACAAATTACCGTGATTCC
AGGAACTGTTGGAT-ACCAGTCCCCTGCTTGTTCGGATTCCTGAACTGGGGGACTGGACTTCCATTCGATGCTGATATTT
TTTGTACTGTATGTGCTGCAGGCCTTTGTCGAAAACTGTGA--GGTTCAACCTCCTTAAAGTCATTCCACCTGTGTCCAC
AGGCGGCACTGGAAAGAAAACATTCACGGCAGCTTGAGCTTGTCAAAATTAGTATAGGTATAGTCGTATTAGATAAAAGT
GCCCACTTAGAATTCGTCTAGCTTTGGTGTTTTGACATCTGGTGCGAGATGTTGAGCCCTCTGTCATTTATCTGAATACG
CGCATTAAATGCATCCGTGCAA----------------GTCTGGTCATGCAAATTGTGGCAGTTGTTGCCCAGTGGTTGG
CTGGTCCTATGGGCTATGGCAGGCACACTATGAACCTTATTTGAAGCAATAGCATCTATATTCTGTTTATCTCTGTCTTG
TGATGGTGACGTGCTATTTCTTTGGTTTACATCTTATTGGGATTAAGGTAACAAAAC-------CTTTTTGCCGACCTCA
CAATTGGTCTTATTTTTTTCTTTCTTCTGTTTATATGGTTAACCGCGGATGTCAAAACTACTTGAATATATTCATCTTGT
TATCTGTTGTCCGAAAGAGATCATCATCCTCACACCTCTTTCGCATGATCTCATGGTTTCCTCTTTTGGATATGGGCATT
TGCTAATTGTCGCGGCGAACCAACCTTTGAAGCAACTACTTGATCAGATAATGCCTGGATTCTGACAGTGACATGAACCT
ACCTTTTCATTTCAGGAAATGCTTCATTGTTTAGATGATAGCTGTTCCTGTGGGCTACTGGCTTGTGCGGGCGTCTCAAG
CTTGAAGAAAGGAGATCGGTTGTTTGCAAGGCATGCAATTTAGGCTGCTTCTTAAAGCGCATTTGATCCTGTTAAAATGC
CCTC--AGACCCATCTCATATTCCGAAGCAATAGTGAGACTTCCAGCCATACAGATGAGCGCCAAAGCCATCTCCCTCTA
TTGCTGTGTACCTGCTGCATTTCTGCTCTTCTTTGCCCATCTCAATAACCCAACCACTTCATTCGTTCGAGCTCTGCTTG
ATCTTGCAACACCACTCCTTCCATTTAATTTCCTTACAGTTCATTATTTTTCTAACTATCATCGCCATCGTGGTTCGTAT
GACCCGCTCTGTGATGATTTCCCGCCAGACTTCCCACCGCCTAACACCGCAGCAACATCGATCTTCTGTGTCGATCCCAA
CGGCTGCTGCGACTTCACCACAGTGCAGTCCGCGGTTGATGCTGTGCCAAGATCCAGCCAAAAGAGGAACGTTGTGTGGA
TCAACAAGGGCATCTATTTGTAACCAATTTTTCTTTGATCATACTCCTAACATCACTTCATGTTCAAAGTGCAAAATTAA
TAAGTGTGCTGTTAATGAAGCTGCATTGTTATTACAGTGAGAAAGTAACAGTCCCTGCTACAAAGCCCAACATCACATTT
CAGGGGCAGGGATTTGATCTGACGGCAATCATGTGGAACGACACCGCCAACTCATCACATGGAACCTTCTACAGCGCTTC
GGTTTCTGTTTTCGCAGCCGGCTTTGTCGCGAAGAACATCAGCTTCATTGTAA--------CCGCGAACACTGCAGATCA
TGTTTCAGTTAAGCCACACTGCATGCACCTTGAGTAGCACTCTAACTCTCTTAATCATCTTGACACCAGAATGTAGCACC
AATTCCAAGACCCGGAGATGTCGGTGCTCAGGCGGTCGCTCTGAGGATCGGCGGTGACCAGGCGGCATTCTGGGGCTGTG
GCTTCTTTGGGGCACAAGATACACTGCACGATGATCGGGGCCGGCATTACTTCAAGGAATGTTTCATTCAGGGCTCCATC
GACTTCATCTTCGGAGATGCTAGGTCACTCTATGAGGTGAGTCAAAGTTATTTCTCAAGGACTGGAAGAAAAAGCACTGA
GTTCGTTCACTAATTCCTTGCTTCCACATGTGTACTCCTCAGAACTGCAGATTGATTTCCATAGCAGATCCTGTGCCTGC
AGGGGTGAGATCCATCACAGGTTCAGTTACTGCACATGCCCGGGAATCCAACCAAGAAAACACCGGGTATTCATTTGTCA
ACTGCAGCATCGGTGGCACCGGGTGGATATGGCTCGGGCGAGCGTGGAGACCTTACTCCCGTGTTGTATTCGCATACACT
TCGATGTCAAATATCATCGCCTCCGATGGATGGAATGATTGGAATGATCCTTCAAGAGATCAGTATGCCTCTCCTGTACT
GCTAGTGTTTTCTGGAATCAATTCAGAATGCACGCTAACATCGGTTTGTTCTATGATTTCCATTGCCAGGAGTGTGTTTT
ATGGAGAGTACAAGTGTACAGGCGATGGCGCACACCTGGCGGGCAGAGTGCCGTACGCTCTTGAGCTCAGCGACGTGCAA
GCATTGCCTTACTTGAACACATCTTTTATCGACGGTGATCTATGGCTGAAACCATACTGCGACTCACTAATATCTGCATG
AAGTCATAAATTCCCAGTTTAAAGTTATGTAGCATTGTATCACAGACAAGCAAAAGGAACAAGTTAGCACAAATCCATTT
GTTGGATTCTCTCACATACCATATAGTACATTAAATCACCTGGGAAAAGTACATCATTTGGAATTTCAGAAATG------
-----------------------------------------------------------------------------TAT
TGATTTCGACAAAGATTGGATTGTCCTCTGTCACTAATCTACATTTACTTGACCTGGTCATTGTAGCTGTAATATGCATA
TATGAAACAAAAAACAGTCATGGTGAAAGAAATGATCTGCACATTAGATCTAATAAACCAATGAGAGAAAAGG-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----ATACATGTCTTTAAGATAGGTTCTCAAGTGTGAGAAGAAAGTTCATAGTTGCAAATCGTTCTGAATACACATTTGG
TTGTTGCCTGCTATCTACTCTGCGCTTCGGGTAACATCAGCTGAACAGTTCATTTACATCGCATGAATAAC-------TG
GTGAGGTGGAAGAGAGAGAAAGGAAAAAAGAGGTCTTGCCTTCTCTTAGCCAAGAGATTATCTCTAATCAAAGAAAGATA
AG------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------ATATGCCATACATAAATCAAAGTAACGCTACAATAGTTACCCATA
ACACGAAAACGCAATTTCTCGCTAATTGCAAGTAATAGTGGTCGCTTGCTCGCCTACACGGTGCCCTGTTGTGGTCTAGG
CCAATAGCTAAACTCGCCTACACGCTTTTTTTGTTTA----------------------------
>chr4B_29
-----------------------------CAGAAACTGGGTGGTTACTTTTATTTCTTTACAATAAATTACCGTGATTCC
AGGAACTGTTGGAT-ACCGGTCCCCTGCTTGTTCGGATTCCTGAACTGGGGGGCTGGACTTCCATTCGATGCTGATATTT
TTTGTTCAGTATGTGCTGCTGGCCTTTGTTGAAAACTGTGAGAGGTTCAACCTCCTTAAAGTCATTCCACCTGTGTCCAC
AGGTGGCACTGGAAAGAAAACATTCAAGGCAGCTTGAGCTTGTCAAAATTAGTATAGGTATAGTCGTATTAGATAAAAGT
GTCCACTTAGAATTCGTCTAGCTTTGGTGTTTTGACATCTGGTGCGAGATGTTGAGCCCTCTGTCATTTATCTGAATATG
CGCATTAAATGCATCCGTTCAA----------------GTCTGGTCATGCAAATTGTGGCAGTTGTTGCCCAGTGGTTGG
CTGGTCCTATGGGCTATGGCAGGCACACTATGAACCTTATTTGAAGCAATAGCATCTATATCCTGTTTATTTCTGTCTTG
TGATGGTGACGTGCTATTTCTTTGGTTTACATCTTATTGGGATTAAGGTAACAAAAC-------CTTTTTGCCGACCTCA
CAGTTGGTCTTATCTTTTTCTTTCTTCTGTTTATATGGTTAACCGCGGATGTCAAAACTACTTGAATATATTCATCTTGT
TATCTGTTGTCCGAAAGAGATTATCATCCTCACACCTCTTTCGCATGATCTCATGGTTTCCTCTTTTGGATATGGGCATT
TGCTAATTGTCGCGGCGAACCAACCTTTGAAGCAACTACTTGATCAGATAATGCCTGGATTCTGACAGTGACATGAACCT
ACCTTTTCATTTCAGGAAATGCTTCATTGTTTAGATGATAGCTGTTCCTGTGGGCTACTGGCTTGTGC-GGCGTCTCAAG
CTTGAAGAAAGGATATCGGTTGTTTGCAAGGCATGCAATTTAGGCTGCTTCTTAAAGCGCATTTGATCCTGTTAAAATGC
CCTCTCAGACCCATCTCATATTCCGAAGCAACAGTGAGACTTCCAGCCATACAAATGAGCGCCAAAGCCATCTCCCTCTA
TTGCTGTATACCTGCTGCATTTCTGCTCTTCTTTGCCCATCTCAATAACCCAACCACTTCATTCCTTCGAGCTCTGCTTG
ATCTTGCAACACCACCCCTAACATTTAATTTGCTTACTGTTCATTATTTTTCTAACTATCATCGCCATCTTGGTTCGTAT
AACCCGCTCTGTGATGATTTCCCGCCAGACTTCCCACCGCCTAACACCGCAGCAACATCGATCTTCTGTGTCGACCCCAA
CGGCTGCTGCGACTTCACCACAGTGCAGTCCGCGGTTGATGCTGTGCCAAGATCCAGCCAAAAGAGGAACGTTGTGTGGA
TCAACAAGGGCATCTATTTGTAAGCAATTTTTGTTTGATCATACTCCTAACATCACTTCATGTTCAAAGTGCAAAGTTAA
TAAGTGTGCTGTTAATGAAGCTGCATTGTTATTACAGTGAGAAAGTAACAGTCCCTGCTACAAAGCCCAACATCACATTC
CAGGGGCAGGGATTTGATCTGACGGCAATCATGTGGAACGACACCGCCAACTCATCACATGGAACCTTCTACAGCGCTTC
GGTTTCTGTTTTCGCAGCCGGCTTTGTCGCAAAGAACATCAGCTTCATTGTAA--------CTGCGAACACTGCAGATCA
TGTTTCAGTTAAGCCACACTGCATGAACCTTGAGTAGCACT-TAACTCTCTTAATCATCTTGACACCAGAATGTAGCACC
AATTCCAAGACCCGGAGATGTTGGTGCTCAGGCAGTCGCTCTGAGGATCGGCAGTGACCAGGCGGCATTCTGGGGCTGCG
GCTTCTTTGGGGCACAAGATACACTGCACGATGATCGGGGCCGGCATTACTTCAAGGAATGTTTCATTCAGGGCTCCATC
GACTTCATCTTCGGAGATGCTAGGTCACTCTATGAGGTGAGTCAAAGTTATTTCTCAAGGACTGGAAGAAAAAGCACCGA
GTTTGTTCACTAATTCCTTGCTTCCACATGTGTACTCCTCAGAACTGCAGATTGATTTCGATAGCAGATCCTGTGCCTGC
AGGGGTGAGATCCATCACTGGTTCAGTTACTGCGCATGCCCGGGAATCCAACTTAGAAAACACCGGCTATTCATTTGTCG
ACTGCAGCATCGGCGGCACCGGGTGGATATGGCTTGGGCGAGCGTGGAGACCTTACTCCCGTGTTGTATTTGCATACACT
TCGATGTCAAATATCATCGCCTCCGATGGATGGAATGATTGGAGTGATCCTTCAAGAGATCAGTATGTCTCTCCTGCACT
GCTAGTGTTTTCTGGAATCAATTCAGAATGCACGCTAA---------GTTCGATGATTTCCATTGCCAGGAGTGTGTTTT
ATGGAGAGTACAAGTGTACAGGCGATGGCGCACACCTGGCGGGCAGAGTGCCGTACGCTCTTGAGCTCAGCGACCTGCAA
GCATTGCCTTACTTGAACACATCTTTTATTGACGGTGACCTATGGCTGAAACCATACTACGACTCACTAATATCTGCATG
AAGACATAAATTCCCAGTTTAAAGTTATCCAGCATTATATCACAGACAAGCAAAAGGAACAAGTTAGCACAAATCCATTT
GTTGGATTCTCTCACATACCATATAGTACACTAAATCACCTGTGAAAAGTACGTCATTTGGAATTTCAGAAATA------
-----------------------------------------------------------------------------TAT
TGATTTCAACAAAGATTGGATTGTCCTGTGTCACTAATCTACATTTACTTGACCCGGTCATTGTAGCTGTAATATGCATA
TA----ACAAAAAACAGTCGTGGTGAAACAAATGATCTGCACATTAGTTCTAATAAACCAATGAGAGAAAAGAATACATG
TCAGTCTGCTGCGCTTGTAGCGTCTATGAGATTGTAACCTAAACTAAATGTTTTTGCTTCTCCTCTCCTCTCTGGGTCTT
TGTTGTAAATGTACTCTGGTTATTAATGAAAAGGTTTAGGCCGGCGTAAGCCCGCCGTAGCATCGTCAAAAAAGAAAGAA
AAGAATACATGTCTTTAAGATAGGTTCTCAAGTGTGAGAAGAAAGTTCACAGTTGCGAATCGTTCTGAATACACATTTGG
TTGTTGCCTGCTATCTACTCTGCGCTTTCGGTAACATCAGCTGAACAGTTCATTTACATTGCATGAAAAGCTGGTGAGTG
GTGAGGTTGAAGAGAGAGAAAGGAAAAAAGAGGTCTTGCCTTCTCTTAGCCAAGAGACTATC------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------
>SNPs
---------S---SS-----SS------S-----------S-------------S----------------S-S------
--------S-----S-----------------S---------S-----------------------S---------S---
SS------------------S---------S---S-S---S------S---S---S------------------------
------------S------S----S----------------------SS----SSSSS-SS-------------------
-----------------------------------------S--------S---S---------S-----------S---
-S-------------S------SSSSSSSSSSSSSSSS------------------------------------------
--------------------------------------S------------S--------S-------------------
----------S--------------------S----S-------------------SSSSSSSS-----------S----
-------------S----S----------S--S---S-----S-------------------------------------
--------------------------------------------------------------------------S-----
-----------SS----------S-------------------------------------------------------S
---------S---------------------------------------------S------------------------
----------------------------------------------------------S----S----------------
---S--------------------------------------------------------S----------S--------
--S---------------------------------------------------------------------S-------
--------------S--S----------------S---------------------------S-----------S-S--S
--------S--SS----------S--S---------------S-------------------------------------
S--------S-----------S-----------------------------------------------S---S------
----S-----------SS-------------S---------SS-----SS--S----S-----S--------------S-
---S--------------------S-----S---------------S--------------S------------------
--------------------------S-----------S-----S--S-----S--------------------------
S--------S-----SS-------------------------------S----SSSSSSSS--S-S----SS--------
--S-------------------------S------------S-------S---------S------S-------------
---------------S-----------------------------------S----------------------------
----------------------------------S--------------------------------------------S
-----------------------------------------------------------S--------------------
---------------S----------------S-----------------------------------------------
----------------------------------------------------S---------------------------
-------------------------------------------S------------------------------------
S---------------------------------------------------------------------------S---
---------------------------------S----------------------------------------------
-------------------------------------------------------S------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------S-------
--------------------------------------------------------------------------SSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---
--S-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------S----------------------------------------------------
----------------------S---------------------------------------------------------
-----------------S--------------------------------------------S--S--S-----------
--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------S--------S----
---------S---------S---------S----------------S-----------------------------S---
--------------S--------S-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_260
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
AGGTGGCACTGGGAAGAAAG------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------
>reverse_1275
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------GCATAC
AACCCGCTTTGCAA------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------
>forward_936
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------GATAGCTGTTCCTGTGGGCA------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------
>reverse_2096
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------GCTTGCTTCCACATGTGCAC---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------
>forward_1493
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------TCCTTTGATCAGGCTGGCAG---------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------
>reverse_2795
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------CTCCCT
CCGTCCCACAATAT------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------
