>input_sequence_48737
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------------------------------------------------------ATGGGCTTCCAGGTGGCGGCCGTCGT
GCCATCGCCGTGCCCGCCCTCGACTTCCTCGCGGTCCCCGTTCCTCGGTGGCGGCGGCGGCTGCGGCATGCTCGCGAGAT
CCTGGGCGCCCGGCGGTCTTGTGTCGCGCCGGCGAGGCGAGGGGCGGCCA------GCGAGGTGCGCGCTGAGTGCCAGC
ATAGATGGCGTGGGCGGCGGGGACATGGAGTTCTTGAGGCGGATAGAGGAGCTGGCGGCGTCGGCGGGGGTGCGGACGGC
GGGGTGCGGGTGGCCGCCGAGCCTGGAACAGAGCGCGAGCAGCGTCGGGCTGCCCCTGTCCCTTAGGATTCTGAAGCGGA
AGAAGCAGCAGCGGCG---GCAGCAGGTGCCGCCGCGGTCGCGGTGGGACGAGCGGCTGAGCCTG---------------
GGCTCCGCCGGCGAGTCGGTGGGCCGCGCCTTCTCCTCCATGGTGCTCATCGTGCGGGAGCTGCAGAGCTTCGCGCTGCA
G------CAGATGCTCTGCGAC---GACCTGCAGGCCGTCCTGGCGCGCGCCCACGGCGAGATGCAGGACTCGTTCGTCT
GGCTCTTCCAGCACATCTTCGCCGGCACCCCGGCGCTCATGCTCTCCCTCATGCTCCTCCTCGCCAACTTCACCGTCCAC
TCGATGAGCAACAGCGTCGCCGCCGCCGCC---------------------------GTCGCACCGACCCCGCCCGCTGC
CCCGGCTGCTACGGTGGTCGACACCCAGCACACCGAGCCAT------CCAACCCGCGGTTCGACGCGGCTTCCGTCAAGA
CGTTCTCTGCTGGCCGCACTGCTTCGGTCGGTGGGGGTAGCGGGGGTGGCGGCGATGTCCGGCCCGTCGCGGGAGCTTCC
GGCGACGACCGGGGGGACGAATCCCGCTACAGTCTAAGCCGCGTCGCACCAC---------AGCAACTAACGCCGCTGGC
GGGGACGGGCGTGGAGAATGTCGTGCCCGGCGCCGCCGCCGTGGACGAGCAGGCCATCTGGGAAAGGATGGTCGCGGAGG
CCTCGAGCATGCAGGCCGATGCGCGCGCCGACGAGTTGACGGACCCGGACGTGCTGGGGAACCTGGTCGCGCCGGTGGAG
GCGGAGATCGAGACGGAGGACGTCGGCG---AGTACGCGCGGACGGAGCAAAGGTACAAGCTGGCCGTGTCCGAGGAGCC
CAACAACTCGCTCATCCTCGCCAACTTCGCCCAATTCCTCTACATCACGCGGAAGGACCACAAGCGGTAGGTCCCCGCCT
CCCCGGCCA---CGCCCCCCAACTGTTCGACGAATTGCCAGTTCAATT-TTTTTACCGTGG-TATTGATCTGTCAACGTG
TCTGTTAATC--GCAGGGCGGAGCACTACTTCGAGCGGGCGGTGCGGGCGGA---GCCGACGGACGCGGAGGCGCTGAGC
CGGTACGCGACGTTCCTGTGGAAGGCGCGGGACGACGTCGAGGCGGCGGAGGAGACGTACCAGGAGGCCATCGCGGCCGA
CCCCGGCAACGCGCACTACGCCGCTGCGTACGCGCATTTCCTCTGGAACACCGGCGGCGAGGACACGTGCTTCCCCCTCG
ACTGA---------------------------------------------------------------------------
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----------------------------------------------------
>chr1B_1_TraesCS1B01G287500
CTATCACTGGTGCGGTATAGATTTTGTGTCAACCACATATTAAATTTCCCCGCAACAAAAAAAACCACATTAGAAATTGA
CTAAAATTATTTTTAACCGGCCAGTGAATCAAGTTGGAACATAAATTCTGGTTTATTTCCAAAATCAATTATCTCTGGTC
AAATATTAATTTCGTTTAAACTCACAAGAGAGGTAAAGTTACCATGAGTAGAACAAATACACAAGGATCGTCCGGCTTTA
TAATAAAGGTCCAAAACAAGTGTGATCAATAGGTCATAAAATTTCGTCGAAGAGGAGAAAACAGAAACAACAACAACGAA
CTAGACGTATAGAGTGACCTGCACATCTGTGGCTAAGTGCGCCGTGGCCTCAACAGCCGTGGCAACGGCATTGCCACGTG
ATCCCCATGATCATGCAGTGCCTACACGGTTGCATGATATGAACAAATTCCCGGTTATGATTCATGAAAACAAAATGTGT
CCGCACGGTAAGTCTGGATTTTGAACTATGATTTACAAAGAACACAAACAGTTCAATTGACATTCAAACCTTCTTTACTT
ATGGGTTGAGTCCCGGAGTTGAACTCTACGAGTGTTCATCAAAGGGTTGAGAGATGTTCCTACAAAATCACAAAAAAGCT
AAGAAGTGGATTTTCCACCCAAAAAGTGCCAAGA-TTTTTTGCTATGACCCAAATACGGTTAGAAGTTTTTTCATCTTGA
TCACACTACACTCCAAGGCACGAACAGTGACACTACAACTAGGCCGCTTCACGTTCACGGGAGGCCGGCCAAGACGGCAA
GACGCGCACGCCCCTCC-GGATCT------CCTTGGTTAAAAGCCCCCGACGCGTTCCCTCCGTTTGCTCGCATCCAGCG
AGTCGCCTCCTTCGACGGCCGTGCGCGGTTTTCCACACCTCCCTCGCGCTCGCGGTGCTGATCTCGAGGCCCAACCAGAG
GCCGAGGGTTGTCGCCGCGCGCAGGGAAGGGGA------CCAGACAAGCTTGCCATGGGCTTCCAGGTGGCGGCCGTCGT
GCCATCGCCGTGCCCGCCCTCGACTTCCTCGCGGTCCCCGTTCCTCGGTGGCGGCGGCGGCTGCGGCATGCTCGCGAGAT
CCTGGGCGCCCGGCGGTCTTGTGTCGCGCCGGCGAGGCGAGGGGCGGCCA------GCGAGGTGCGCGCTGAGTGCCAGC
ATAGATGGCGTGGGCGGCGGGGACATGGAGTTCTTGAGGCGGATAGAGGAGCTGGCGGCGTCGGCGGGGGTGCGGACGGC
GGGGTGCGGGTGGCCGCCGAGCCTGGAACAGAGCGCGAGCAGCGTCGGGCTGCCCCTGTCCCTTAGGATTCTGAAGCGGA
AGAAGCAGCAGCGGCG---GCAGCAGGTGCCGCCGCGGTCGCGGTGGGACGAGCGGCTGAGCCTG---------------
GGCTCCGCCGGCGAGTCGGTGGGCCGCGCCTTCTCCTCCATGGTGCTCATCGTGCGGGAGCTGCAGAGCTTCGCGCTGCA
G------CAGATGCTCTGCGAC---GACCTGCAGGCCGTCCTGGCGCGCGCCCACGGCGAGATGCAGGACTCGTTCGTCT
GGCTCTTCCAGCACATCTTCGCCGGCACCCCGGCGCTCATGCTCTCCCTCATGCTCCTCCTCGCCAACTTCACCGTCCAC
TCGATGAGCAACAGCGTCGCCGCCGCCGCC---------------------------GTCGCACCGACCCCGCCCGCTGC
CCCGGCTGCTACGGTGGTCGACACCCAGCACACCGAGCCAT------CCAACCCGCGGTTCGACGCGGCTTCCGTCAAGA
CGTTCTCTGCTGGCCGCACTGCTTCGGTCGGTGGGGGTAGCGGGGGTGGCGGCGATGTCCGGCCCGTCGCGGGAGCTTCC
GGCGACGACCGGGGGGACGAATCCCGCTACAGTCTAAGCCGCGTCGCACCAC---------AGCAACTAACGCCGCTGGC
GGGGACGGGCGTGGAGAATGTCGTGCCCGGCGCCGCCGCCGTGGACGAGCAGGCCATCTGGGAAAGGATGGTCGCGGAGG
CCTCGAGCATGCAGGCCGATGCGCGCGCCGACGAGTTGACGGACCCGGACGTGCTGGGGAACCTGGTCGCGCCGGTGGAG
GCGGAGATCGAGACGGAGGACGTCGGCG---AGTACGCGCGGACGGAGCAAAGGTACAAGCTGGCCGTGTCCGAGGAGCC
CAACAACTCGCTCATCCTCGCCAACTTCGCCCAATTCCTCTACATCACGCGGAAGGACCACAAGCGGTAGGTCCCCGCCT
CCCCGGCCA---CGCCCCCCAACTGTTCGACGAATTGCCAGTTCAATT-TTTTTACCGTGG-TATTGATCTGTCAACGTG
TCTGTTAATC--GCAGGGCGGAGCACTACTTCGAGCGGGCGGTGCGGGCGGA---GCCGACGGACGCGGAGGCGCTGAGC
CGGTACGCGACGTTCCTGTGGAAGGCGCGGGACGACGTCGAGGCGGCGGAGGAGACGTACCAGGAGGCCATCGCGGCCGA
CCCCGGCAACGCGCACTACGCCGCTGCGTACGCGCATTTCCTCTGGAACACCGGCGGCGAGGACACGTGCTTCCCCCTCG
ACTGACGCGCGGAGGAGGGGCCGTGTTCTTGCGCCTGCCGCGGTGGAGGCCGGCACGAGGCGAGACGCCGAGAGCACGGC
ACCATGGCCAGGCTAGTGGGCGGTGGATTGGAGCTGGGCTAACACATCATGATCCGTTTACTTAGTAGATTGAGTAGGAG
TGTTCAGGGGGCGGTGTGGTGGTGATCTGGGAGTCCGCGGTGCCGTGTTTCCCGCCCCGGGAATACGGCAGCCGGAGCTT
TTGGCCGTGCAGATGTGAGGGCG-AAGTCCCGATGAGCTTGTCGGTCATCTCCCTGGCATGCAATGGGTGGCTGTAGGCT
GGTGGTGGCGCAGTGAGGAGGAAGAAGGGGGAGTGGTGG---CACGGACGTTTGGATACGCTGCGTGTAGCAACTTGCGT
CCGGTAATTATGGTGTGTAGTATATGAGCAAAAGAACAAGTGAATAATAAGAAGGTGATGGTGATCTCGGTGCAATCTTT
CTCGGATGTTTCATATTTGTACTCTAGCCTCT-GGGA-TTGGAGCGCCCAAGGTGCAAGTGAGAACGTTTTTTGGGCACA
GATATCGATTTGTAGCTAGTTGCACGTTCCCGT-TGATCGATTAGTGTTGCTAGCAGCATATGGTTACTGATTATCGCCG
ATGTTTAGAGCATCTCAAGCCGATCTTAAGTTTTTCGTTTCGACTCAATAAACAAGCCGATCTCAAGCCGATGTTTAGAT
CATTGGTGATGTACCAAAAGCTCCAACGTCTCTCTCATCTTCAATGATCATGTTGTGAAAGATGCAACATATCATTATTT
TTTCATAGGACATGTGGGTTGCAATACTCGGAAGGACCACGAACAATGACAAAGTGCTTCCGAAGCACACCAAACTCTCT
CTCAACATCCTTGTCAATTCTTGACACATTGCAAAGTGGGATCTCACGTTGCCTTCGATGGGTTTACAGTTTTCTCCCCC
AATGTACTCCTCACTCCTCAGCTTAAACCATTCATCATACTTTTCCACAACT
>chr1A_561
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ATGGGTTGAGGGCCATAGTTGAACTCTACGAGCGTTCATCAAAAAGTTGAGAGATGTTCCTACAAAATCACAAAAAGGCT
AAGAAGTGAATTTTCCACCAAAAAATTCCAAGATCTTTTTTGCTATGGCCAAAATACGGTTAGAACTATTTTCATCTTGA
TCACACTACACTCCAAGGCACAAACAGTGACACTACAACTAGGCCGCTTCACATTCACGGGAGGCCGGCCAAGGCGGCAA
GACGCGCACGCCCCTCCTGGATCT------CCTTGGTTAAAAGCACCCGACGCGTTCCCTCGTC-TGCTCGCATCCAGCC
AGCCGCCTCCTTCGACGGCCGTGCGCGG-TTTTCACACCTCCCTCGCGCCCGCGGTGCTGATCTCGAGGCCCAACCAGAG
GCCGAGGGCTCTCGCCGCGCGCAGGGAAGGGGACTAGGACCAGACAACCTAGCCATGGGCTTCCAGGTTGCGGCCGTCGT
GCCGTCGCCGTGCGCGCCCTCGACCTCCTCGCGGTCCCCGTTCCTTG---------------GCGGCAGGCTCATGAGAT
CCTGGGCGCCCGGCGGTCTTGTGTCTCGCCGGCGTGGCGAGGGGCGGCCCGCGGGCGCGAGGTGCGCGCTGAGTGCCAGC
ATAGATGGCGTGGGCGGCGGGGACATGGAGTTCTTGAGGCGGATCGAGGAGCTAGCGGCGTCGGCGGGGGTGCGGACGGC
GGGGTGCGGGTGGCCGCCGAGCCTGGAGCGGAGCGCGAGCGGCGTCGGGCTGCCCCTGTCTCTTCGGATGCTGAAGCGGA
AGAAGCAGCAGCGGCGGCAGCAGCAGGTGCCGCAGCCGTCGCGGTGGGACGGGCGGCTCCGCCTG---------------
GGCTCCGCCGGCGAGTCGGTGGGCCGCGCCTTCTCCTCCATGGTGCTCATCGTGCGGGAGCTGCAGAGCTTCGCGCTGCA
G------CAGATGCTCTGCGAC---GACCTGCAGGCCGTCCTGGCGCGCGCCCACGGCGAGATGCAGGACTCGTTCGTCT
GGCTCTTCCAGCACATCTTCGCCGGCACCCCGGCGCTCATGCTCTCCCTCATGCTCCTCCTCGCCAACTTCACCGTCCAC
TCCATGAGCAACAGCGTCGCCGCCGCCGCC---------------------------G----------------------
--CGGCTGCCGCAGTGGTTGACGCCCAGCACACCGAGCCGT------CCAACCCGCGGTTCGACGCGGCTTCGGTCAAGA
CGTTCTCTGCTGGCCGGACCGCCTCGGTCGGTGGGGGCAGCGGGAGTGGCGGCGATGTCCGGCCCGTCGCGGGCGCTTCC
GGCGACGACCGGTGGGACGAATCCCGCTACAGTCTGAGCCGCGTCGCGCCAC---------AGCAACTAACGCCGCTGGC
GGGGACGGGCGCGGAGAATGTCGTGCCCGACGCCGGCGCCGTGGACGAGCAGGCCATCTGGGAAAAGATGGTCGCGGAGG
CCTCGAGCATGCAGGCCGACGCGCGCGCCGACGAGCTGACGGACCCGGGCGTGCTGGGGAACCTGGTCGCGCCGGTGGAG
GCGGAGATCGAGACGGAGGACGCCGGCGGCGAGTACGCGCGGACGGAGCAGCGGTACGAGCTGGCCGTGTCCGAGGAGCC
CAACAACTCGCTCATCCTCGCCAACTTCGCCCAATTCCTCTACATCACGCGCAAGGACCACAAGCGGTAGGCCTTCG---
-----GTCA---CGCCCCCCAGTTGTTCGACGAATTGCCCGTC----CATTTTCACCGTGGTTATTGATCTGTCGACGTA
TCTCTTAATC--ACAGGGCGGAGCACTACTTCGAGCGGGCGGTGCGGGCGGA---GCCGGCGGACGCGGAGGCGCTGAGC
CGGTACGCGACGTTCCTGTGGAGGGCGCGGGACGACGCCGAGGCGGCGGAGGAGACGTTCCAGCAGGCCATCGCGGCCGA
CCCCGGCAACGCGCACTACGCCGCCGCCTACGCGCATTTCCTCTGGAACACCGGCGGCGAGGACACGTGCTTCCCCCTCG
ACTGACGCCCG------------TGTTCTTGCGCCGCCCGCGGTGGATGCCGGCGCGAGGCGAGACGCCGAGAGCACGGC
ACCATGGCCGGACTAGTGGGCGGTGGATTGGAGCTGGGCTAACACATGATGATCCGTTTACTTAGTAGATTGAGTAGGAG
CGTTCAGGGGGCGGTGAGGCGGTGATCCGGGAGTCCGTGGCGCCGTGTTTCCCGTCCCGGGAATACGGCGACCGGAGCTT
TTGGCCGGGCAGACGTGAGGGCG-AAGTCCCGATGAGCTTGCCGGTCATCTCCCTGGCATGCAATGGGTGGCTGTAGGCT
GGCGGTGGCGCAGTGGGGAGGAAGAAGGGTGAGTGGTGGTGGCATGGATGTTTGGATATGTTGTGTGTAGCAACTTGCGT
CCGTTAATTATGGTGTGTAGTATATGAGCAAAAGAACAAGTGAATAATAAGAAGGTGATGGTGATCGCGGTGCAATCTTT
CTCGGATCTTTCGTATTTGTACTCTAGCCTCTGGGGA-TTGGAGTGCCCAAGGTGCAAAA--------------------
---ATCGATTTGTAGCTAGTTGCACGTTCCCCGCTGATCGATTAGTGTTGCTAGCAGTATATGGTTACTGATTATCGCCG
ATGTTTAGAGCATCTCAAGCGGATCTTAAGCTTTTCGTTTTGA-------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------------
>chr1D_609
--------------------------------------------------------------------------------
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------------------------------------------------GAGAGATGTTCCTACAAAATCACAAAAATAGT
AAGAAGTGAATTTTCCACCAAAAAGTTCCAAGAT-TTTTTTGCTGTCACCAACATACGGTCAGAAGTTTTTTCATCCTGA
TCACACTACACTCCAACGCACAAACAGTGGCACTACAACCAGGCCGCTTCACGTTCACGGGAGGCCGGTCAAGACGGCAA
GACGCGCACGCCCCTCCGGGCTCCGGATCCCCTTGGTTAAAAGCCCCCGACGCGTTCCCTCGTC-TGCTCGCATCCAGCG
AGCCGCCTCCTTCGACGGCCGTGCGCGG-TTTTCACACCTCCCTCGCGCTCGCGGTGCTGATCTCGAGGCCCAACCAGAG
GCCGAGGGCTCTCGCCGCGCGCAGGGAAGGGG------ACCAGACAAGCTTGCCATGGGCTTCCAGGTCGCCGCCGTCGT
GCCATCCCCGTGCGCGCCCTCGACCTCCTCGCGGTCCCCGTTCCTCGGCGGCGG------CTGCGGCGTGCTCGCGAGAT
CCTGCGCGCCCGGCGGCCTTGCGGCCCGCCGGCGTGGCGAGGGGCGGCCCGCG------AGGTGCGCGCTGAGTGCTAGC
ATAGATGGCGTGGGCGGCGGGGACATGGAGTTCTTGAGGCGGATCGAGGAGCTGGCGGCGTCGGCGGGGGTGCGGACGGC
GGGGTGCGGGTGGCCGCCGAGCCTGGAGCGGAGCGCGAGCGGCGTCGGGCTGCCCCTGTCTCTTCGGATGCTGAAGCGGA
AGAAGCAGCAGCGGCG---GCAGCAGGTACCGCAGCCGTCGCGGTGGGACGAGCGCTTCCGCCTG---------------
GGCTCCGCCGGCGAGTCGGTGGGCCGCGCCTTCTCCTCCATGGTGCTCATCGTGCGGGAGCTGCAGAGCTTCGCGCTGCA
G------CAGATGCTCTGCGAC---GACCTGCAGACCGTCCTGGCGCGCGCCCACGGCGAGATGCAGGACTCGTTCGTCT
GGCTCTTCCAGCACATCTTCGCCGGCACCCCGGCGCTCATGCTCTCCCTCATGCTCCTCCTCGCCAACTTCACCGTCCAT
TCGATGAGCAACAGCGTCGCCGCTGCCGCC---------------------------GTCGCGCCGACGCCGCCC-----
----GCTGCTACGGTGGTCGACACCCAGCACACCGAGCCAT------CGAACCCGCGGTTCGACGCGGCTTCCGTCAAGA
CGTTCTCTTCTGGTCGCACTGCCTCGGTCGGTGGGGGCAGCGGGGGTGGCGGCGATGTCCGGCCCGTCGCCGGCGCTTCC
GGCGATGACCGGCGGGACGAATCCCGCTACAGTCTGAGCCGCGTCGCGCCAC---------AGCAACTAACGCCGCTGGC
GGGAACGGGCGCGGAGAATATCGTGCCCGACGCCGCAGCCGTGGACGAACAGGCCATCTGGGAAAGGATGGTCGCGGAGG
CCTCGAGCATGCAGGCCAATGCGCGCGCCGACGAGTTGACGGACCCGGACGTGCTGGGGAACCTGGTCGCGCCGGTGGAG
GCGGAGATCGAGACGGAGGACGCCGGCG---AGTACGCGCGGACGGAGCAGAGGTACGAGCTGGCCGTGTCCGAGGAGCC
CAACAACTCGCTCATCCTCGCCAACTTCGCCCAATTCCTCTACATCACGCGGAAGGACCACAAGCGGTAGGTCCCCG---
-----GCCA---CGCCCCCCAACTGTTCGACGAATTGCGGGTTCAATTTTTTTTACCGTGG-TATTGATTTGTCAACGTG
TCTGTTAATC--GCAGGGCGGAGCACTACTTCGAGCGGGCGGTGCGGGCGGA---GCCGGCGGACGCGGAGGCGCTGAGC
CGGTACGCGACGTTCCTGTGGAGGGCGCGGGACGACGTCGAGGCGGCGGAGGAGACGTACCAGCAGGCCATCGCGGCCGA
CCCCGGCAACGCGCACTACGCCGCCGCGTACGCGCATTTCCTCTGGAACACCGGCGGCGAGGACACGTGCTTCCCCCTCG
ACTGACGCGCG------------TGTTCTTGCGCCGGCCGCGGTGGATGCCGGCACGAGGCGAGACGCCGAGAGCACGGC
ACCATGGCCAGGCTAGTGGGCGGTGGATTGGAGCTGGGCTAACACATCATGATCCGTTTACTTAGTAGATTGAGTAGGAG
CGTTCAGGGGGCGGTGGGGTGGTGCTCCGGGAGTCCGTGGTGCCGTGTTTCCCGCCCCAGGAATACGGCGACCGGAGCTT
TTGGCCGGGCAGATGCGAGGGCGAAAGTCCCGATGAGCTTGTCGGTCATCTCCCTGGCATGCAGTGGGTGGCTGTAGGCT
GGTGGTGCCACAGCGGGGAGGAAGAAAGGCGA---GTGGTGGCATGGACGTTTGAATATGTTGTGTGTAGCAACTTGCGT
CCGGTAATTACGGTGTGTAGTATATGAGCAAAAGAACAAGTGAATAATAAGAAGGTGATGGTGATCTCGGTGCAATCTTT
CTCGGATCTTTCCTATTTGTACTCTAGCCTCTAGGGATTTGGAGTGCCCAAGGTGCAAGTGAGAACGTTTTGTGGGCACA
AAATTCGATTTGTAGCTAGTTGCACGTTCCCCGCTGATCGATTAGTGTTGCTAGCAGTATATGGTTACTGATTATCGCCG
ATGTTTAGAGCATCTCAAGCCGACCTTAAGTTTTTCGTATTGACT-----------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------
>chr3B_1257
CGGCG---------------------------------------------------------------------------
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--GCTGCGGCTGGCCGGCGAGCGTAGAGCGGAGCGCCAGCAGCGTCGGTCTGCCGCTGTCGCTCAGGATGCTCAAGCGCA
AGAAGCGGCAGCAGGG---GCAGCGCGGC------------CGGTGGGACGAGCGGCTGCTCGACCGCGCGGGCGAGTCC
GGCTCCGGCCGCGGTGCGGTGGGGCGGGCGTTCTCGTCCATGGTGCTCATCATCCGGGAGCTCCAGAGCTTCGCGCTGCA
GATGCGGCAGGCGCTCTTCTACGAGGACATGCAGAGCGTGCTCGCGCGCGTGCACGCCGAGATGGACGCCTCCTTCGTCT
GGCTCTTCCAGCACATCTTCGCCGGCACCCCCGCCCTCATGGTCTCCGTCATGCTCCTCCTCGCCAACTTCACCGTCTAC
TCCATGGGTGACAACATCGCGATGGCGGCCAACCTCCCGCCTCCCCAGCCCACCGTGG----------------------
--CGGCCGTCGCAATGCTCGACGCCCAGCACGCGGAGCAGTCCCGTCCCGATCAGCGGTTCGACAGTGTGTCGCTCAACA
TGTTCTCCATTGGCCGCACGGCCTCGGTGGACGGGAACAGCGGCGGCGGTGGCAAGGCTCCGCCGGTTGCCGGGGCCACC
GGCGACGATCGCTCGGACGAATCCTCGTACCGGCAAAGCGGCGCGGTGCTTCCCCAGGACGAGTCACAGGCGACGCCGGT
GGGGGCGGCCGCGGAGGACACGGA------------------GGACGAGCTGGTCATCTGGAAAAGGATAGCCGACGAGG
CGACGAGAATGCAGGCGAGCGTGCGCGTGGAGGCTCTGATGGACCCGGACATCCTGGGGCAGCTCGTCGCGCCGGTGGAG
GCGAAGCTGGACACGGAGGACGTGGC---CGACTACGCGAGGACGGAGCAGAGATACGCGATGGCCGTGTCCGAGGAGCC
CAGCAACGCGCTGCTGCTCGCCAACTTCGCGCAGTTCCTGTACCTGGTGCAGCGCGATCACGACCGGTAGGCGCCGC---
-----GCCATGGCGCCATCAAACTGTTCGACACAATGTCATCG----TTTTTTCACCGTCGCTGACGGGCGGTGGTTTCT
TCATGG--TC--GCAGGGCGGAGCACTACTTCAAGCGGGCGGTGCGCGCGGAGCAGCCGGCGGACGCGGAGACGCTGGGG
TGGTACGCGACGTTCCTGTGGAAGGCGCGCAACGACCTGGCGGCCGCGGAGGAGACGTTCCAGGAGGCCATCGCCGCCGA
GCCGAGCAACGGGCACCACGCGGCGGCCTACGCGCACTTCCTGTGGAACACGGGCGGCGAGGACACATGCTACCCCCTCG
ACTGACGCGCG---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------------
>chr3D_1257
CGGCG---------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--GCTGCGGCTGGCCGGCGAGCGTGGAGCGGAGCGCCAGCAGCGTCGGCCTGCCGCTGTCGCTCAGGATGCTCAAGCGCA
AGAAGCGGCAGCAGGG---GCAGCGCGGC------------CGGTGGGACGAGCGGCTGCTCGACCGCGCCGGCGAGTCC
GGCTCCGGCCGCGGCGCTGTGGGACGGGCGTTCTCGTCCATGGTGCTCATCATCCGGGAGCTCCAGAGCTTCGCGCTGCA
GATGCGGCAGGCGCTCTTCTACGAGGACATGCAGAGCGTGCTCGCGCGCGTCCACGCCGAGATGGACGCCTCCTTCGTCT
GGCTCTTCCAGCACATCTTCGCCGGCACCCCCGCCCTCATGGTCTCCGTCATGATCCTCCTCGCCAACTTCACCGTCTAC
TCCATGGGTGACAATATCGCGATGGCCGCCAACCTCCCGCCTCCCCAGCCCACCGTTG----------------------
--CGGCCGTCGCAATGCTCGACGCCCAGCACGCGGAGCAGTCCCGTCCCGATCAGCGGTTCGACAGCGTGTCGCTCAACA
TGTTCTCCATTGGCCGCACGGCCTCGGTGGACGGGAGCAGCGGCGGCGGTGGCAAGGCTCCGCCGGTCGCCGGGGCCACC
GGCGACGATCGCTCGGACGAATCCTCGTACCGGCAAAGCGGCGCGGTGCTTCCTCAGGACGAGTCACAGGCGACGCCGGT
GGGGGCGGCCGCGGAGGACACGGA------------------GGACGAGCTGGTCATCTGGAAAAGGATAGCCGACGAGG
CGACGAGAATGCAGGCGAGCGTGCGCGTGGAGGCTCTGATGGACCCGGACATCCTGGGGCAGCTCGTCGCGCCGGTGGAG
GCGAAGCTGGACACGGAGGACGTGGC---CGATTACGCGAGGACGGAGCAGAGATACGCGATGGCCGTGTCCGAGGAGCC
CAGCAACGCGCTGCTGCTCGCCAACTTCGCGCAGTTCCTGTACCTGGTGCAGCGCGATCACGACCGGTACGTGCCGC---
-----GCCATGGCGCCACCAACCTGTTCGACGCAATGTCATCG----TTTTTTCACCGCCGCTGACGGGCGGTGGTTTCT
CCATGGTCGCATGCAGGGCGGAGCACTACTTCAAGCGGGCGGTGCGCGCGGAGCAGCCGGCGGACGCGGAGACGCTGGGG
TGGTACGCGACGTTCCTGTGGAAGGCGCGCAACGACCTGGCGGCCGCGGAGGAGACGTTCCAGGAGGCCATCGCCGCCGA
GCCCAGCAACGGGCACCACGCGGCGGCCTACGCGCACTTCCTGTGGAACACGGGCGGCGAGGACACATGCTACCCCCTCG
ACTGACGCGCG---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------
>chr3A_1257
CGGCG---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--GCTGCGGCTGGCCGGCCAGCGTGGAGAGGAGCGCCAGCAGCGTCGGGCTGCCGCTGTCGCTCAGGATGCTCAAGCGCA
AGAAACGGCAGCAGGG---CCAGCGCGGC------------CGGTGGGACGAGCGGCTGCTCGACCGCGCCGGCGAGTCC
GGCTCCGGCCGCGGCGCTGTGGGACGGGCGTTCTCCTCCATGGTGCTCATCATCCGGGAGCTCCAGAGCTTCGCGCTGCA
GATGCGGCAGACGCTCTTCTACGAGGACATGCAGAGCGTGCTGGCGCGCGTCCACGCCGAGATGGACGCCTCCTTCGTCT
GGCTCTTCCAGCACATCTTCGCCGGCACCCCCGCCCTCATGGTCTCCGTCATGCTCCTCCTCGCCAACTTCACCGTCTAC
TCCATGGGCGACAACATCGCGATGGCCGCCAACCTCCCGCCTCCCCAGCCCACCGTGG----------------------
--CGGCCGTCGCAATGCTCGACGCCCAGCACGCGGAGCAGTCCCGTCCCGATCAGCGGTTCGACAGCGTGTCGCTCAACA
TGTTCTCCATTGGCCGCACGGCCTCGGTGGACGGGAACAGCGGCGGCGGCGGCAAGGCTCCGCCGGTCGCCGGGGCCACC
GGCGACGATCGCTCGGACGAATCCTCGTACCGGCAAAGCGGCGCGGTGCTTCCACAGGACGAGTCACAGGCGACGCCGGT
GGGGGCGGCCGCGGAGGACACGGA------------------GGACGAGCTCATCATCTGGAAAAGGATAGCCGACGAGG
CGACGAGAATGCAGGCGAGCGTGCGCGTGGAGGCGCTGATGGACCCGGACATCCTGGCGCAGCTCGTCGCGCCGGTGGAG
GCGAAGATGGACACGGAGGACCTGGC---CGACCACGCGAAGACGGAGCAGAGATACGCGATGGCCGTGTCCGAGGAGCC
GAGCAACGCGCTGCTGCTCGCCAACTTCGCGCAGTTCCTGTACCTGGTGCAGCGCGATCACGACCGGTACGTGCCCC---
-----GCCATGGCGCCACCAAACTGTTCGACACAATGTCATCG----TCTTTTCACCGTCGCTGACGGGCGGTGGTTTTT
CCTG---ATC--GCAGGGCGGAGCATTACTTCAAGCGGGCGGTGCGCGCGGAGCAGCCGGCGGACGCGGAGACGCTGGGG
TGGTACGCTACGTTCCTGTGGAAGGCGCGCAACGACCTGGCGGCCGCGGAGGAGACGTTCCAGGAGGCCATTGCCGCCGA
GCCCAGCAACGGGCACCACGCGGCGGCCTACGCGCACTTCCTGTGGAACACGGGCGGCGAGGACACATGCTACCCCCTCG
ACTGACGCGCG---------------------------------------------------------------------
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----------------------------------------------------
>SNPs
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
----------SS--SS----------------S----------SS-------------------------------S---
--------S----------S-----S-S-S-SSS----------------S-----------------------------
---------------------S----------------------------------------------------------
-------------------------------------------------------------SSSS---------------
--S-------------------------S---S-----------------------------------------------
--------S-S---------------------------------------------------------S-----------
-------------S----------S-----------------------S-----SSSSSS--------------------
-------------------------S--------S--------------S------------------------------
--------------------------------------------S-----------------------------------
---------------------------S-S------------------------------S--------S----------
---------------------------------S--S----------------------S--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------S-----S------SSSSS
SS------------------------------------------------------------------------------
----------------------S--------------S-----------------------------------S------
------------S----------------------------------S--------------------------------
-----------S-----------------S--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------S------S----------------------
-----------------------------------------------------------------------------SSS
SSSSS---------------------------------------------------------------------------
-----------------------------------------------------------S--------------------
--------------------------------------------------------------------------------
------------------------S-------------------------------------------------------
-----------SSSSSSSSSSSS------------S-----------S--------------------------------
--------------------------------------------------------------------------------
S---------------S----------S---------S-------------------------------SS---------
-------S------------------------------------------------------------------------
---------------S-------------S--------------S-------------S-S--S----------------
--------------------------------------------------------------------------------
-------S----S-------------------------------S--------------------------S--------
S-S----------------------------SS------------------------S----------------------
----------------------------------------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_742
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--ACACTACACTCCAAGGCACG----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------
>reverse_2817
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------TGGTGGTGATCTGGGAGTCC--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------
