>input_sequence_48657
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-----------ATGCACAACAAGGCCCCCCACCCCATCCTGTACCGTACTCCCAATTCGCCGGCCAACAGATCTGCAGCC
ATGGAGAAGCAGAAGCTGCGCCGTCTCGTGCGAGGACCACGTAGGGCCGCCGGC--------------------------
-GAGCTGACCGCCCTCATAGTGGGCAGGCT---GGACACCCGCACCGCGCTCTCCACCGCCGTCCTCGCTAGGCGCTGGG
CGCGTGTTCCTCGTGACCTGCCCGCTCTCGACTTCAGGGTCAGCGACATACTCCCGCCAGAGTACGATCAGGCCGTCGCT
CTCCGCGAGGACAACCTGCCGCCTGACCCGGCCATGGCCGGGATGCTCGACGGTTTCCTGGCGCGCTGCGAGATGGGCAG
CACGAGGGCGTTGGCCGACGGAGTCACCAGCTTCTTGGCAGCCGACTGT------GACGGCGACGCACGTCGCCGCGTCA
AGACCCTCCGGCTCGAGTTCTTCCCCACGGATCACGGCGGCATCATCGAGCATCTGATCGCCGCCGCTGTCGGCTCGTGG
GGCGTGGAAGATCTGGAGATGGTCGTCAGACCAGCGTCCG---GCCATCATGATGG------GCCCGCCTACCCCTTCCC
--------CGACGACTGCCTCGGCGACGGCGGCAGGTCGCGCCTGCGCAGCCTGGCGCTGGGCAACACCACGCTCCCGCC
GCTGCACAGCTACGAGGCGCTCACCACGCTCGTCTTGCAAGGCGTGGCCGCGTCCACGCCCGTCGCCGTCTACGAGAGGC
TGTTCAGCGACCTCACACGGCTTCAGGTGCTGCATCTCATATCATGCAGCTGCACGGCGGACCTCGACCATCTGGTGGTC
GACGCACCGGGTTCAGCCATGAGGGAGCTCGTCGTGGAAGAATGCGCGTTCTCAAGGATCACGGTGCGCGCCCTCCCAAT
GCTCGCCCGCCTGGCGTGCATAGGCACGACCGTGGTGCTCAGGCTCGACTCCGTTCCGAACCTCACGCAGGTGAACCTCA
CATTCTGGGGGAGCAAGA-AGCCCTCGAACTTCCTCGGGAAGGCCCCAGCAGGGACGACGAGCCTCGTCCTCCGGTTCAC
CAGGCCAAGTAGATGGGTGGTGCCGATGCACCTGGCCACGCCGTTCCTCGGCCTGAAGAGGCTCCTCGTCGCCGACCTGC
CTTCCAACTGGGACGTCTCGTGGCCGCGCATGCTCGTGCTTGCCGCGCGGTCGCTCGAGGTCCTGCACAGCCATGTGGCT
CACTCCGACGAGAAGCAGGGAGAGGAGATAGCGTGGTGGCTCTGGCCGAGACCGAAGCGGAAGCTGCGGCATCGGAACAT
GAAGGAGGTGGTCATGATTGGATTCACGCAGACATCACGCCAGATAAAGTTCCTGAGGGATCTTGTGAGGATGTGCAGAT
CTTTACAACGCGTTGTTCTGCTCAGGGATGGCCAAGTGCAGTACAATGGACTCTGGGATTGGAAGATGGTCGGCCAGCCA
GAATGTCCATGGAGCACTCATGATAAAATGGCTGTAACGAAAATGATCGAGCCTGCGTCCAGGCCTCTGGTCGATGTAAT
CTTGGGATGA----------------------------------------------------------------------
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>chr2A_1_TraesCS2A01G189800
TGCAACTTCCGGGTGTGCCTCTTCTTCCTGAC------------------------------------------------
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----------------------------------GACCATG---------------------------------------
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-----------------------------------------------------TCCCTGAGCTACCCCAAGAGAGATGGC
GCTGGCAATGACACGAGGAGCCTGTCCAGCCTTGCTGACAGGCTCACTCTCTGGCAAT---------------------G
GCAGGAATGGATTGAGCTTCTGATCCTTCACTTGGAGGTCTTCTCCCTCGAGCAGCTCATCGACCGCTACTCACCCCCGC
GACACGGAGATGGCATGCCAACAAAAGAGCCTGGAACGGAGGGGCGCATCTTACTCAATGTGTCGGCCGAGCTCACCATT
TATGAGAATCGTTAGCCTCGAAAATCGGTGATGTCTCTGGAAGGCGTGTACTAAAATCCAGACGACGGCCGGATGCACCT
GATCGGCTGCCGAGATGTCCGGCTCCCACCGCAGAACTCGT---CGAGGAGCAGAGACCTCCGACTCTGAAGAAGGAATG
GACTGCTCCATCGAGGTGAAAGTCGAGTACCCAACAACGACGATGAACTGGTTCTGGCTCAATATGTCGGCGGCGAAGGT
TCAGATAGCAAGCACGAGGACGGCCACTGACCCGCTGTATTTCGGCGTGGTGAAGCTCAGGGCTCTGCCTGTCCTCTAC-
------CCGAAGCACCTGCCGGATGGGATTTACCATGGAACCGTCAATGGCATCCTCTGCATTGTGCTGCTGACGGCCAC
CATCGCCCTTGATCATGACAGTTGACAACTAGAAGTAAGAAAACACTCTGCATATATCCTTGTGAAGCCTATGTGCAGAT
GCAGGTTAGGCCAATACCTTGTGTTGTTCGTTTTTTGTTGTCGATGTGAACAAATACTCCATGGGAATGATATGGTGCCA
TGCAAATCCGACGCGCAGCGGGCCTGAACTGCCCGCCAAGTCGAACTTCTCCCGCCAGCAGACGGTGCCGTGCGC-----
-AGACCTGAATTCCCCTCCGAATCGAACTCCCTGGGCGGACCTGAATTCCCCGCCAGATCCAACTTCTCTCTCAAGCAGA
CCTGACTATTTATGCACAACAAGGCCCCCCACCCCATCCTGTACCGTACTCCCAATTCGCCGGCCAACAGATCTGCAGCC
ATGGAGAAGCAGAAGCTGCGCCGTCTCGTGCGAGGACCACGTAGGGCCGCCGGC--------------------------
-GAGCTGACCGCCCTCATAGTGGGCAGGCT---GGACACCCGCACCGCGCTCTCCACCGCCGTCCTCGCTAGGCGCTGGG
CGCGTGTTCCTCGTGACCTGCCCGCTCTCGACTTCAGGGTCAGCGACATACTCCCGCCAGAGTACGATCAGGCCGTCGCT
CTCCGCGAGGACAACCTGCCGCCTGACCCGGCCATGGCCGGGATGCTCGACGGTTTCCTGGCGCGCTGCGAGATGGGCAG
CACGAGGGCGTTGGCCGACGGAGTCACCAGCTTCTTGGCAGCCGACTGT------GACGGCGACGCACGTCGCCGCGTCA
AGACCCTCCGGCTCGAGTTCTTCCCCACGGATCACGGCGGCATCATCGAGCATCTGATCGCCGCCGCTGTCGGCTCGTGG
GGCGTGGAAGATCTGGAGATGGTCGTCAGACCAGCGTCCG---GCCATCATGATGG------GCCCGCCTACCCCTTCCC
--------CGACGACTGCCTCGGCGACGGCGGCAGGTCGCGCCTGCGCAGCCTGGCGCTGGGCAACACCACGCTCCCGCC
GCTGCACAGCTACGAGGCGCTCACCACGCTCGTCTTGCAAGGCGTGGCCGCGTCCACGCCCGTCGCCGTCTACGAGAGGC
TGTTCAGCGACCTCACACGGCTTCAGGTGCTGCATCTCATATCATGCAGCTGCACGGCGGACCTCGACCATCTGGTGGTC
GACGCACCGGGTTCAGCCATGAGGGAGCTCGTCGTGGAAGAATGCGCGTTCTCAAGGATCACGGTGCGCGCCCTCCCAAT
GCTCGCCCGCCTGGCGTGCATAGGCACGACCGTGGTGCTCAGGCTCGACTCCGTTCCGAACCTCACGCAGGTGAACCTCA
CATTCTGGGGGAGCAAGA-AGCCCTCGAACTTCCTCGGGAAGGCCCCAGCAGGGACGACGAGCCTCGTCCTCCGGTTCAC
CAGGCCAAGTAGATGGGTGGTGCCGATGCACCTGGCCACGCCGTTCCTCGGCCTGAAGAGGCTCCTCGTCGCCGACCTGC
CTTCCAACTGGGACGTCTCGTGGCCGCGCATGCTCGTGCTTGCCGCGCGGTCGCTCGAGGTCCTGCACAGCCATGTGGCT
CACTCCGACGAGAAGCAGGGAGAGGAGATAGCGTGGTGGCTCTGGCCGAGACCGAAGCGGAAGCTGCGGCATCGGAACAT
GAAGGAGGTGGTCATGATTGGATTCACGCAGACATCACGCCAGATAAAGTTCCTGAGGGATCTTGTGAGGATGTGCAGAT
CTTTACAACGCGTTGTTCTGCTCAGGGATGGCCAAGTGCAGTACAATGGACTCTGGGATTGGAAGATGGTCGGCCAGCCA
GAATGTCCATGGAGCACTCATGATAAAATGGCTGTAACGAAAATGATCGAGCCTGCGTCCAGGCCTCTGGTCGATGTAAT
CTTGGGATGATCAATTTATTTGTTTCTAGTTATTGATGATAGTTGTTGGAAAAGCCTAGGGTTCTGTTGACTTATAAGAA
AGTGCGATATATGTACT-CCAAATTTTAACCTCAAATGGTCACCAATAACTAGAAGCTCTGACTAACCTTGAACTTCAAA
TCCGTCCAATTTGCAACTCTAAATTCTCAAAACCGTATAACTTACAACTCTGACTCCCCTTAAACCTGTTTTTGGCCAGT
TTTTTTTATTGGTACGCG--ACATGTCAGCCCCCTCTCTCTGTTTGTTCTTCCCACCCCCGACTCGCATCTCTCCCAACC
CCCGGCGGCGACCGGCGGCACCGCCACCAGATGCCCCCGACGCGGCTATCCAGCGGTGGCTGAGGAGCACAACATTGTCG
TGGGCGGTGAGCGCGGCGACAGATGTGTGGAGGTAGCTTGCCTCACGCGGCGCCATGAGGTGACACCAGCAGACATGGTC
GAGTTGTGGGAACTGCCCGGCATCCAGCGGGCCACCCCGTGACAGTGGCCGAAGTTGTTCTCCCTCACGAGTCACTTCAG
GCGCACGTCCTCCTCCGCTATCCACCTAGGCCGTGGCCTTAGGAGCACGGTGGACAATGCTCGATCTCCACGGCGGTAAA
GACACATGTGTGTGCGCCTCCGAGAGGAAGCGGACATTGATGAGTCGTTGAAGCCTTTCTCACTGGCGAGCCACTCAAGG
TGCGCATACTTGGTCGCCGCCAACTAGTGGCCACGGCTGGGGGCAACAGGAATTTGAATGGCCACGGCTGGGCATGGTGC
CAGATTTGCAGAAGAAGGGGTTGTGGGAGATCGTGCGATCGCTCGGGACATGATTGGTGTTGGGAAACGTAGTA------
---AAAAAATCATCATACGATCAAACCAGGAACACTATGAAGATGCATTAACGGTTTAGATCGGGTCGTTACCAACTCCA
AGTTGCAGCGGAATAAGAGTCGGTGTAGTCCATCGAACCTTCATGAACGATACCTCGAACTG
>chr2A_1
TGCAACTTCCGGGTGTGCCTCTTCTTCCCGAC------------------------------------------------
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----------------------------------GACGATGTCGATTACCCGCCTTGACACCATGCTGGGACAGATAACC
GGCGTGGACGGAGCAGCCGGCGGAGTGGCACACCGGCCCCTCCTGTCGTTCCGGCAGCACATGAGCCCGCCACGCCTCTG
GGGCTACTATCCCGACGATGGCATACCGCTGGTGTCATACAAGTACAACTACACGAAGGTCAATCAGGCCGGCGGGCTGC
GCGAGAGGAGCGAATTGCCATCGGACTTCCGCAGGATCGTTGCCAAGTCTCTGTCCCTGAGCTACCCCAAGAGAGATGGC
ACTGGCAATGACAGGAGGAGCCTGTCCAGCCTCGCCGACAGGCTCACTCTCTGGTTCATGGCCATGCCAGACCTGTTCCG
ACAGGAATGGATTGAGCATCCGATCCTTCACTTGGAGGTCTTCTCCCTCGAGCAGGTCATCGACCGCTATTCACCCCGGC
AACACGGAGATGGCATACCAACAAAAGAGCCTGGAACGAAGGGGCGCATACTACTCAATGTTTCGGCCGAGCTCACCATT
TTTAAGGATCGTTGGCCTAAAAAATCAGTGATGTCTCTTGAAGGCGTGTAC---AATCCAGACGACGGCCGGATGCACCT
GATCGGCTGCCGAAATATCCGGCTCGCGCGGCAAAACTTGT---CCACGAGCAGAGACCTCGGACTC-GAAGAAGGGATG
GACTGTTCCATCGAGGTGAAAGTGGAGTACCC------------------------------------------------
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>chr2D_1
TGCAACTTCCGGGTGTGCCTCTTCTTCCCGAC------------------------------------------------
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----------------------------------GACGATGTCCATTACCGGCCTCGACACCATGCTGCGAGAGATAACC
GGCGTGGACGCAGCAGCCGGCGGAGTGGCATACCCGCCCCTCCTGTCGTTCCGGCAGCACATGAGCCCGCCACGCCTATG
GGGCTACTATCCCGACGATGGCATACCGCTGGTGTCATACAAATACAACTACGCGAAGGTCAATCAGGCCGGCGAGCTGC
GCCGGAGGAGCCAATTGCCGTCGCACTTCCGCAAGATCGTTGCGAAGTCTCTGT------------CCATGAGAGATGGC
GCTGGCAATGACAGGAGGAGCCTGTCCAGCCTCGCCGACAGGCTCACTCTCTGGTTCATGGCCATGCCAGACCTGTTCCG
GCAGGAATGGATTGAGCGTCCGATCCTTCACTTGGAGGTCTTCTCCCTCGAGCAGGTCATCGACCGCTATTCACCCCCGC
AACACGGGGATGGCAGACCAACAAAAGAGCCTGGAACGGAGGGGCGCATACTACTCAATGTGTCGGCCGAGCTCACCATT
TTTAAGGATCGTTGGCCCCAAAAATCAGTGATGTCGCTTGAAGGCGTGTAC---AATCCAGACGACGGTCGGATGCACCT
GATCGGCTGCCAAGATGTCCGGCTCCCGTGGCAAAACTCAT---CGACAAGCAGAGATCTGGGACTC-GAACAAGGGATG
GACTGCTCCATCGAGGTGAAAGTCGAGTACCCGCCGACCACGATGCACTTGTTTGTC------ATGTCGACGGCGAAGGT
GCAGATAGCGAGCACGAGGACGGCCGTCGACGCGCTGCATTTCAAGGCGGTGAAGCTCAGGGCTATGCCCTCG---TAC-
------CCGCAGCAGCGGCCCAGCGGGTTCTACCGAGGCGTCGTCAATGGCGTGCTCTGCATTGTACTGCTATCAGCCAC
GATCGC--------------------------------------------------------------------------
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>chr2B_1
TGCAACTTCCGGGTGTGCCTCTTCTTCCCGACTGTTGAGTATAATGTTTATTAGGAAAGACGAGATAGATTAGGATTTGT
TCTGGCTTGTCTTGTACTCTAAGTAGATGATTGTACTCCTATATATATGCCCATGAGGCTCAAGCAATACAACAAACTAT
TCCACCAAATCTTTCTCTCTCCCTTCTAACATGGTATCTATCGCAAGTTGATCCTAAACCCTAGCCGCCGCCGCTTCCGC
ACCCGCGCGCCGCCCCCAGGGCGGTCAGCCTCCATGACCGCCGCCGGGGGCCGCGCCGCCCGTACCTAGGGTTCGTCCGC
CGGCCGTGTTGGTCGGCTGCCCTAGAGAGTTTTTTTCCCGATCCTTTGATCCGGATTTCTCTCTCTCGCCGGTCGCCTTG
ATCGACGACTACTTTTTGGTTTTCCGGTCTATGTGATCCGGTTTGCGTCGCCCACCGCCGCCCTCGACCCCGTGCGCCTC
TACTCCAACACCGGCGCGATTGGCCGGCTTCTTCACCGACCCGGCGGCCTCGCGCGTCGTCCGCGCGTCGGCCCGCCGGT
CGCCCCAACCCGCCGGCCTCGCGTCATGCGGCGGCCCTTCACCGTCGCCGTTCGCGTGACGGCCCGCCCGTCGATCTACG
CCGGCCGTGATCGCCCTGCTCCGACCGGGACTCCTGCATCACCCCGACCCGGCGGCCTCGCGCCATGCGGCGGCCAATCA
TAGCCGCCCTGCCACCTGTGGCTGCCGGCTTCATCTCGGACTCCGCCGCCACCACGTCTCCACCGAGCGGCGTCCCCGAC
CTCGCGCGCGATCGGCTTGATCACCCGCTCGCCGCCGCGATCCGCCTCATCTACGCCGCGCGACCGACCTGGCCCGTCGG
TTACGCGCGCCTCCGCAGGTCCCGTGAAGATCGTCCCCTAGTTCAGCGCGCCTCTCCACCGATCGAGCATCGGGCTGCCG
CTCCTTCGCCCCGTCGGGCCGCCGCCCCGTGGTTCTTCTCCCGGCTGCACCGACCTGCGTCACCGCTGCGTCGCCCCTTT
GGGCCATAGTGCCGCGGCCCGCGGTCCCCCGCTGCCCCGAAGGCGTCCGCTCTAGGCCGTCTCGTGGCTGCATCGACCCT
CGCGCCGCCGCTGCGTCGCCCCGTCGGGCCGTAGCGAGCATGGCACGCGGTCCACGCCGCCGTCCCGAGGCCGTCCCTGC
GGTTGCACCGACTCGCGAACTGCCGTTGCGTCGCCCCTTCGGGCCGCAGCGTCGCGGCCCGCGGTCTCCGCCGTCGCCCC
GACCCGCCTGCCGCCGCTGCGTCGCCCCTTTGGGCTGTAGCGCCGCGGCCCGCGGTCCACTCCGCCGTCACCGCGCGTCG
ATCTCCCGTGGTATGCGCCGCGCCGTCTCCCTTGGCGCGGGAACACCACCGTCCGTGCCGATCTTCGTCACGCTGTCAGG
GTTCTTCGCCTAATTCGAGCACCGCCGCCGCACTCCTAACCTAGCCGCCGCCGCCGCTCTTCTTTGGCCGCCGTCGCCGC
CCGTCCACCCCCTTCGTCTTCGTCCAAGCACCAGCCCGTCGCCAGCGTCGCCGTCATCTACCCCGACCACTTCGTCTACT
CCGACCACCGTTGGTGACATCGGCCCCGCGCCGATGGACGCCGCAATCGTCGTCGAGTTCTTCTCTGCTGGCCCCTCCGA
CTTCTCCGACATGGCGTACAGCTCGTGCAGGTCCCTCGTCTACGCATGCCCGGTGCTGGCAACACCGATGCGTGCCTTCA
TCCACGATGTGTCCCCGGGCCTGGCAAGCCTGGTCGACGCTTCGTCAACTTCGTCTTCGTCCGTCTACGCATGCCCGGTG
CTGGCAACACCGGTGTGTGCCTTCGTCCATGATGTGTCCCCGGGCTTGGCAAGCCCGACGCGACGCGTCGTCAACAACAT
CTTCTTCCCGGCGCACCTCTACTTCGACACCACTGCGTCCATGACTAACTCGGCGCCTCCTTGCGCCCGCGGCTCCACGG
CGACTTCCTCGACACCGGCCACCCCGACTCGACATCGACCACGACATTCGTCGCACGGCTACCTCGACCACGGCTCCACC
ACCATATGCTCTCGGCTACCTCGACAAACGGCATAAAGGGCTACCGCCTTGTTTGAGCAACCTCGTCGGTTTTCACTCCA
GCCACGACTCCGCGATGCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNGAGGGGATGTTGAGTATAGTGTTTATTAGTAAAGACGAGATAGACTAGGATTTGTTC
TGGCTTGTCTTGTACTCCAAGTAGATGATTGTACTCCTATATATATGCCCACGAGGCTCAAGCAATACAACGAACTATTC
CACCAAATCTCCCTCTCTCCCTTCTAACACCGACGACTATGTCGATTAACCGCCTCGACACAATGCTGGGACAGATAACC
GGCGTGGACGCAGCAGCCGGCGGAGTGGCACACCCGCCCCTCCCGTCGTTCCGGCAGCACATGAGCCCGCCACGCCTCTG
GGGCTACCATCCCGACGATGGCATACCGCGGGT---------GTACAACTACACGAAGGTCAATCAGGCCGGCGAGCTGC
GCCGGAGGAGCGAATTGCCATCGGACTTCCGCAAGACCCTCGCGAAGTCTCTGTCCCTGAGCTACCCCAAGAGAGATGGC
GCTGGCAATGACAGGAGGAGCCTGTCCAGCCTCGCCGACAGGCTCACTCTCTGGTTCATGGCCGTGCCAGACCTGTTCCG
GCAGGATTGGATTGAGCATCCGATCCTTCACTTGGAGGTCTTCTCCCTCGAGCAGGTCATCGACCGCTATTCACCCCCGC
AACACGGAGATGGCATACCAACCAAAAAGCCTGGAACGGAGAGGCGCATACTACTAAATATGTCGGCCGAGCTCACCATT
TTTAAGGATCGTTGGTCTCAAAAATCAGTGATGTCACTTGAAGGCGTGTAC---AATCCAGACGACGGTCGAATGCACCT
GATCGGCTGCCGAAATGTCCGGCTCCCACAGCAAAACTCGT---CGACAAGCAGAGACCTCGGACTC-GAAGAAGGGATG
GACTGCTCCATCGAGGTGAAAGTCGATTACCCTCCGACCACAATGCACTTGTTTGTC------ATGTCGACGGCGAAGGT
GCAGATAGTGAGCACGAGGACGGCCGTCGACCCGCTGCATTTC-------------------------------------
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>chr2D_254
TCT-----------------------------------------------------------------------------
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---------------------------------------------------TGCTCAATGTATCGGCCCAGCTCATCAAT
TTTGAGAATCGTTGGCCTCGAAAATCGGGGATGTCTCTGGAATGCGCGTAC---AATCCAGACGACGGCCGGATGCACCT
GATCGGCTGCCGAGATGTCCGGCTCCCACCGCAGAACTCGTCAACGACGAGCAGAGACCTCGGACTC-GAAGAAGGAATG
GAC---------------------------CCAACAACGACGATGCACTCGTTCTGGCTCAATATGTTGGCGGCCAAGGT
TCAGATAGCAAGCACGAGGACGGCCACTGACCCGCTGTATTTCGGCGTGGTGAAGCTCAGGGCTCTGCCTGTCCTCTACC
CGAAGGCCGAAGCACCTGCCGGATGGGATTTACCATGGGACCGTTAATGGCATCCTCTGCATTGTGCTGCTGACGGCCAC
CATCGCCCTTGATCATGACAGTTGACAACTAGAAGTAAGCAAACACGTTGCATATATTC-TGTGAAGCCTATGTGCAGAT
GCAGGTTAGGCCAATACCTTGTGTTGTTCGTTTTTTGTCGTCGATGTGAACAAATACTCCATGGGAATGATATGGTGCCA
TGTAAATCCGACGCGCAGCGGGCCTGAACTGCCCGCCAAGTCGAACTTCTCCCGCCAGCAGACGGTGCCGTGCGCTTGCG
CAGACCTGAATTCCCCTCCTAATCGAACTCCCTGGGCGGACCTGAATTCCCCGTCAGATCCAACTTCTCTCTCAGGCAGA
CCTGACTATTTATGCACCACAAGGCCCCCCACCTCATG--------------------------CACCAAATCTGCAACC
ATGGAGAAGCAGAAGCTGCGCCGTCTCGTGCGAGCACCACGCAGGGCCGCCGGCGAGGACCGCCTGAGCGCCCTTCCTGA
CGAGCTGATCGGCCTCATTGTGGGCAGGCT---GGACACCCGCACCGCGCTCTCCACCGCCGTCCTCGCTAGGCGCTGGG
CGCGTGTTCCTCGTGACCTGCCCGCTCTCGACTTCAGGGTCAGCGACATACTCCCGCCAGAGTACGATCAGGCCGTCGCT
CTCCGCGAGGACAACCTGCCGCCTGACCCGGCCATGGCCGGGATCCGCGACGGTTTCTTGGCGCGCTGCGAGATGGGCAG
CACGAGGGCGTTGGCCGACGGAGTCACCAGCTTCTTGGCAGCCGACTGT------GACGGCGACGCACCTCGCCGCGTCA
AGACCCTCTGGCTCGAGTTATTCCCCACGGATCACGGCGGCTGCATCGAGCGTCTGATCGCCGCCGCTGTCGGCTCATGG
GGCGTGGAAGATCTGGAGATGGTCGTCAGACCAGCGTCCG---GCCATCATGATGG------GCCCGCCTACCCCTTCCC
--------CGACGACTGCCTCGACGACGGCGGGAGGTCGCGCCTTCGCAGCCTGACGCTCGGCAACACCACGCTCCCGCC
GCTGCACAGCTACGAGGCGCTCACCACGCTCGTCTTGCAAGGCGTGGCCGCGTCCACGCCCGTCGCCGTCTACGAGAGGC
TGTTCAGCGACCTCACACGGCTTCAGGTGCTGCATCTCATCTCATGCAGCCGCACGGCGGACCTCGGTCATCT-------
---------GGTTCAGCTATGAGGGAGCTCGTCGTGGAAGAATGCGCGTTCTCAAGGATCACGGTACGCGCCCTCCCAAT
GCTCGCCCGCCTGGCGTGCATAGGCACGACCGTGGTGCTCAGGCTCGACTCCGCTCCGAACCTCACGCAGGTGAACCTCA
CATTCTGGGG-AGCAAGA-AACCCTCGAACTTCCTCGGGAAGGCCCCAGCTGCGACGACGAGCCTCGTCCTCCGGTTCAC
CGGGCCAAGTAGATGGGTGGTGCCGATGCACCTGGCCACGCCGTTCCTCGGCCTGAAGAGGCTCCTCGTTGCTGACCTGC
CTTCGAATTGGGACGTCTCGTGGCCGCGCGTGCTCGTGCTTGCCGCACGGTCGCTCGAGGTCCTGCACATTCATGTGGCT
CACTCCGACGAGAAGCAGGGAGAGGAGATAGCGTGGTGGCTCTGGCCGAGACCGAAGCGGAAGCTGCGGCAACGGAACAT
GAAGGAGGTGGTCATGATTGGATTCACGCAGACATCACGCCAGATACAGTTCTTGAGGGATCTTGTGAAGATGTGCAGAT
CTTTACAACGTGTTGTTCTGCTCAGGGATGGCCAAGTGCGGTACAATGGACTCTGGGATTGGAAGATGGTCGGCCAACCA
GAATGTCCATGGAGCACTCATGATAAAGTGGCGGTGACGAAAATGATCAAGCCTGCGTCCAGGCCTCTGGTCGATGTAAT
CTTGGGATGATCAA-TTATTTGTTTCTATTTATTGATGATAGTTGTTGGAAAAGCCTAGGGTTCTGTTGACTTATGACAA
AGTGTGATA-----------------------------------------------------------------------
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>chr1D_1119
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-------------------------------------------------CCGAC--------------------------
-GACCTGCTCCGCCTCATAGTGAGCAGGCTGGAGGACACCCGCACTGCGCTCTCGACCGCCGTCCTCTCCCGGCGATGGG
CGCATATCCCCCGCGAGCTGCCGGCGCTGGACTTGAAGGTGGGCGACATACTCCCGCCGGAGTACAACCAGACCATCGAC
CTTCGCGAGCGTAACTTGCCGGGTGACA---------CGGGGAGCCTGGACGGTCTCATGGCGCACTGGGAGCTCCGCAG
CACGAGGACGTTCACCGACAGCATCGCTAGCCTCGTGGCAGCGGGCGGTAGTAGCGACGGCGACGCACGCCGGCGCGCCA
AGACCCTCCGGCTCGAGTTTTTCTCCGCGAACGACGGCGGCTGCATCGATCGCCTGGTCGCCGCCGCCGTCGGCGCGTGG
GGGGTGGACGATCTGGAGATCGTCGCCAGGCCAGCGTCCTCCTGCCATCATGAAGGTAACGCGCCAGCCCACCGCTTCCC
--------CCACGACCTCCTCGACGACGGCGGCAGGTCACGCCTCCGCAGCCTGACTCTGGGCAACTGCACGCTCCCGCC
GCTGCACACCTACGAGGCGCTCACCACGCTCGTCTTGCAAGACGTGGCCGCGTCCACGCCCGTCGCCGTGTACGAGAGGC
TGTTCACCGACTGCACACGGCTTGAGGTGCTGCATCTCAAATCTTGCGGCTGCACGGAGGACCTTGACCATCTTGTGGTC
GACGCGCCGGGTTCAGCGATCAGGGAGCTCCTCGTGGAGGAATGCGCATTTTCAGAGATCACGCTGCACGCCCTCCCAAT
GCTCGCCCGCCTGGCATGCCTTGGCAGAACCATGATGCTCAGGTTCGGCTCCGTTCCTAGCCTCACGCACCTAAACCTCA
CATTCTGGGA-AGACGGCGAACCCCTGGACTTCCTCCGCAAAGCCCCAGCAGCCACCACCAACCTCGTCCTCCGGTTCAC
CGGGCCGAGTAGATGGGTCGTGCCGATGCACCTGGCCACACCGTTCCGCGGCCTCAAGCGGCTCCTCGTCGCCGACCTGC
CTTCGAATTGGGATGTCTCGTGGCCGCGCATCCTCCTCTTCTTCGCGCGGTCGCTCGAGGTCCTGCACATCCACGTGGCT
CACTCCGACGATGAACCAGGAGAGGATATATGGTGGTTGAACATACGGAAGAAGCTGCG------GCGGCACCGGCACAT
GAAGGAGCTGGTCATCATTGGATTCGCGCCGACACCGCGCCAGAAACTGTTGGTGAAGGATGCTTTGAGCATGTGCAGAT
CTTTGCAACGCCTTGTTCTGCTCAGGGATGGCCATGTGCGATACAATGGACTCTGGGAGTGGGAGATGGTCGGGCAGCCA
GACTGTCCGTGGAGCGCTGATGATACAATGGCGGTGACAAAACTGATCAACTCTGCATCCAAGCCTCTCCTTGATGTGAT
CTTGGGATGAT---------------------------------------------------------------------
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>chr1B_1119
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-------------------------------------------------CCGAC--------------------------
-GACCTGCTGCGCCTCATAGTGAGCAGGCTGGAGGACACCCGCACCGCGCTCTCGACCGCCGTTCTCTCCCGGCGATGGG
CGCATATCCCCCGCGAGCTGCCGGCGCTGGACTTGAAGGTGAGCGACATACTCCCGCCAGAGTACAGCCAGACCGTCGAC
CTTCGCGAGCGCAACTTGCCGGGTGACA---------CCGGGAGCCTGGACGGTCTCATGGCGCACTGGGAGCTCCGCAG
CACGAGGGCGTTCACCGACAGCATCGCTAGCTTCGTGGCAGCGGACGGTAGTAGCGACGGCGACGCACGCCGGCGCGCCA
AGACCCTCCGGCTCGAGTTTTTCTCCGCGAACGACGTCGCCTGCATCGATCGCCTGGTCGCGGCCGCCGTCGGCGCGTGG
GGGGTGGACGATCTGGAGATCGTCGCCAGGCCAGCGTCCTCCTGCCATCATGACGGTGACGCGCCAGCCTACTGCTTCCC
CCACGAGGCCACGACCTCCTCGACGACGACGGCAGGTCGCGCCTCCGCAGCCTGACTCTGGGCAACTGCATGCTCCCGCC
GCTGCACACCTACGAGGCTCTCACGACGCTCGTCTTGCAAGACGTGGCCGCGTCCACGCCCGTCGCCGTGTACGAGAGGC
TGTTCAGCGACTGCACACGGCTTGAGGTGCTGCATCTCAAATCTTGCGGCTGCACGGAGGACCTTGGCCATCTTGTGGTC
GACGCGCCGGGTTCAGCGATCAGGGAGCTCCTCGTGGAGGAATGCGCATTTTCAGAGATCACGCTGCACGCCCTCCCAAT
GCTCGCCCGCCTGGCATGCCTTGGCAGAACCGTGATGCTCAGGTTCGGCTCCGTTCCGAGCCTCACGCACCTAAACCTCA
CATTCTGGGA-AGATGACGAACCCCTGGACTTCCTCCGCAAAGCCCCAGCAGCCACCACCAACCTCGTCCTCCGGTTCAC
CGGGCCGAGTAGATGGGTCGTGCCGATGCACCTGGCCACGCCGTTCCGCGGCCTCAAGCGGCTCCTCGTCGCCGACCTGC
CTTCGAATTGGGATGTCTCGTGGCCGCGCATCCTCCTCTTCTTCGCGCGGTCGCTCGAGGTCCTGCACATCCACGTGGCT
CACTCCGACGATGAACCAGGAGAGGATATATGGTGGCTGAACATACGGAAGAAGCTGCG------GCGGCACCGGCACAT
GAAGGAGCTGGTCATAATTGGATTCGCGCCAACACCGCGCCAGAAACTGCTGGTGAAGGATGCTTTGAGCATGTGCAGAT
CTTTGCAACGCCTTGTTCTGCTCAGGGATGGCCATGTGCGATACAATGGACTCTGGGAGTGGGAGATGGTCGGGCAGCCA
GCCTGTCCGTGGAGCGCTGATGATACTATGGCGGTGACAAAACTGATCAAGTCTGCATCCGAGCCTCTCCTTGATGTGAT
CTTGGGATGAT---------------------------------------------------------------------
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>chr2D_2614
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------------------------------------------------------------------------------AA
AGTGTGATATATGTACTTCCAAGTTTTAACCTCAAATCGTCACCAATGTCTAAAAAAC------AACCTTGAACTTCAAA
TTCGTCCAATTTGCAACGCTAAAGTCTCAAAACCGTACAACTTACAACTCAGACTCCCCTTAAACCTGTTTTTGGTCAGT
TTTTTT-ATTGGTACGCATCACCTGTCAGCCCCTTCTCTCCCTTTGTTCTTCCCACCCCTGACTCGCATCCTTCCCAACC
CCCGTCGGCGACCGGCGGCACCGCCACCAGATGCCCCCGGTGCGGCTATCCAGCGGTGGCTGGGGAGCATAACATTCTCG
CGGGTAGTGAGGGCGGCGACAGATGTGTGGAGGTAGCTTGCCTCACGTGGTGCCATGAGGTGACGCCAGCAAACACGGTA
GAGTTGTGGGAAGTGCCCGGCATCCGGCGGGCCACCCGGTGACAGTGGCCGAAGTTATTCTCCCTCACGAGTCACTTCAT
GCGCACGTCCTCCTCCGCCATCCACCTAGGACATGGCCTTAGGAGCACGGTGGACATCGCTCAATCTCCTCGGTGGTAAC
GAGACATGTGTGTGCGCCTCCGGAAGGAAGCGGACATCGATGAGTCGTTGAAGCCTTTCTCGCTGGCGAGCAACTCAAGG
TGCGCATACTCGGTTGCCGCCAACTAGTGGCCACGGCTGGGGGCAACAGGAATTTGAATGGCCATGGCTGGGCATGGAGC
TGTATTTGGAGAAGAAGGGGTTGCGGGAGATCGTGCAATCGCTCGGGAGGTGATTGGTGTTGGGAAACGTAGTAGAAAAC
AAAAAAAAATCATCCTACGATCAAACAAGGTACACTATGAAGATGCATTAATGGTTTAGAGCGGGTCGTTACCAACTCCG
AGTTGCAGCAGAATAAGAGTCGATGTAG----------------------------------
>SNPs
----------------------------S---------------------------------------------------
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-------------------------------------S------------------------------------------
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-------------S------------------S--S------------------SSSS----------------------
-----------------S--S----------------------------------S-------------S----------
S---------------S--------------------------------SS-----------------------------
-S-----------S-------------------------------------SSS--------------------------
-----------------------------------------------S-------------S-----S------------
---------------------------------------------S---S------------------------------
--------------------------------------------------------------------------------
--------------------------------------S-----------------------------------------
---------------------------------------S------SS---------S-S--------------------
--------------------------------------S-----------------------------------------
--S-----------------------------------------------------------------------------
-------------------S---------------------------------S--------------------S-----
-----------------S---------------S---SSSSSSSSSSSSSSSSSSSSSSSSSSS--S--S-------S--
----------------------------------S------S--------------------------------------
--------S--S--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------S------------S----------------------
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-------------------S---------------------SS--------S----------------------------
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----------------------S---------------------S---------S-------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------S------
-----S-----------S--------------------------------------------------------------
--------------------------------------------------------------------------------
----------S---------S-------------------------------S---------------------------
-S------------------------------------------------------------------------------
----S--S-------------------------------------------------------------S----------
-----------------------------------------------------------------------S--------
----------------------------------------------S-----S---------------------------
---------------------------------------S----------------------------------------
--------------------------------S--S------------S-------------------------------
--------------S-------------S----------------------------------------------S-S--
----S-----------------S--------------S---------SS---S--SSSSSSSSS----------------
-S---------------S-----S-------------S------------S------------------------S----
------S----------S----S----------S------SS-----------------S----------SS--------
----S----------------------------------SS---------------------S------S------S---
S---SS-----S-----------------------------------S--S-------------S------S---S---S
------------S------------S-----------S------------------S----------------------S
------------------S-----------S-S-----------------------SS----S------S---S-----S
--S-------------------SS-------------S-----------------------S---------S--------
----------S---S-------------------------------------------------S------------S--
SSS-----S--------------S------------S-----------SS------------------------------
--------------S-----------S---S--------------------S--------S------------------S
---------S------------S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_2598
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------------------GCCTCTTCTTCCTGACGACC------------------------------------------
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>reverse_4891
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----------GAGCAAGAAGCCCTCGAACT--------------------------------------------------
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>forward_3780
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CAGACCTGAATTCCCCTCCG------------------------------------------------------------
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>reverse_5721
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----------------------------------------TGTTTGTTCTTCCCACCCCC--------------------
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