>input_sequence_48537
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---------------ATGGCCTCCTACGACAAGGCCATGGAGTCGTACAAGAAGGCCGTCACCACGGCGGCCTCCCTCGC
GGCGTCCGCGATGCTGGTGCGGGGCGTCGTCAACGAGCTGGTGCCCTACGAGGTGCGTGACCTGCTCTTCTCCGGCATGG
GCTACCTTCGCTCGCACATGTCCTCCCAGCACACCATCATCATAGAGGAGACCGAGGGGTGGGCCAACAACCAGCTCTAC
GACGCCGCGCGGGCGTACCTGGCGACGCGGATCAACACCGACATGCAGCGCCTCCGGGTCAGCCGCGTCGACGAGACCAA
GAGCATGATGTTCAGCATGGAGGAGGGCGAAGAGATGGCCGATGTCCATGAGGGCACCGAGTTCAAGTGGCGCCTTGTCT
GCCGGGACAACTCCAGCGCCAGCAGCAGCAACACCAACGGCCGTGGCGGCAGCGGCAATTTCAAGCTTGAGGTCCGGTCC
TTCGAGATGAGCTTCCACAGGAAGCACAAGGACAAAGCACTTACCTCCTACCTCCCTCACATCCTCGCCGTGGCCAAGAA
AATCAAAGAGCAGAACAGGACGCTCAAGATCTACATGAACGAAGGTGAGTCATGGTTTGCCATTGATCTCCACCACCCAT
CAACCTTCAGCACGCTTGCCATGGATCACAAGCTCAAGCAGTCAGTCATGGATGATCTCGAGAGGTTTGTCAAGAGAAAG
GAATACTACAAGAAGATCGGCAAGGCATGGAAACGAGGGTACCTGCTGTATGGCCCACCTGGGACTGGCAAGTCAAGCAT
GATTGCAGCAATGGCCAATTACCTCAAATTTGATGTATATGATCTTGAGCTCACTGAGGTCAACTGGAACTCAACACTTC
GGAGGTTGCTCATCGGGATGACCAACCGGTCAATTCTTGTCATTGAGGACATCGACTGCACTGTCGAGCTGCAACAGCGG
GAGGAAGGTCAGGAGGGCACCAAATCCAACCCTTCAGAGGACAAGGTTAGATAGATACTTGGAATGATATTTCCCTTGCA
TTGCTTAGTTCC--TTAGTTTTCTTTCCATTCTGATGTCCTATGTGCTATCTCCAACAGGTGACACTATCCGGGCTACTC
AACTTCGTTGATGGGCTTTGGTCAACAAGTGGGGAGGAGAGGATAATTATCTTCACAACAAACTACAAAGAAAGGCTCGA
TCCTGCGCTTCTGCGCCCTGGCAGGATGGACATGCACATTCACATGGGGTACTGCTGCCCAGAGTCGTTCCGAATCTTGG
CCTCCAACTACCACTCTATAGATCACCATGCCACATACCCGGAGATAGAAGAATTGATCAAGGAGGTCATGGTGACTCCA
GCAGAGGTCGCAGAGGTGCTCATGAGGAATGAAGAGACGGACGTCGCACTCAAAGGT----CTTATCCAGTTCCTCAAGA
GAAAGAAAGATGGCGCTGGCAAACCGGAAAATGTGGACCAGGTGGCGAAGGAGGAAGAACAAGAGAAGGAGATGATGACG
AA--------------------------------------------------------AAGTGATGTCCCAGATAATGAA
GAT---CAGCAAGATGGGAGCAAAGA---ATGA-----------------------------------------------
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>chr3D_1_TraesCS3D01G218100
TGCTACTCGGGCGTCAACCGTTGTTAGTCAGCAGCAGCCGGACTCTCGCGGATGCTCGGCATGGAAACGTGACGGGGACA
CGAGACCAAAAGGAAACACGTAGT--AGACGGTTGTGAGCGCTGCAGAAATTTCCTACGGAAACTCGCAGCCAACTGCCG
ACAGCTACAAGT------------------------------------CTATGCAGACAGTTGTAAACTTGCTTTACCCT
GCACAA--------GGCTCCAAAAAAGAATTTAAAAAACGTCATTATGCGTGTGCATTTGCAAGGGTTTTCCCGCAACCA
TCCCATCTGTGTCTATCAGGCAGCATGTTAATCGTGCATACGTGTTCCTCGTGTAGTGCAACTTCAACAAATTTGAACAG
AGTGCCCAATAATAAAAAGCAAATTCGAACAGGAAATTCGCCCGTTTGTGTAATACATTCTTTTACAGTACCTGACAGCA
CCAAAAACAAAAGCATGTGCTTTCACTACCGGAGGCCTTGGAAA------------------------------------
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------------------------------------------CAAATATGGTCATGATTCTCAAGCACATACTACATCAT
TGGTTTATCGACAACGCATTCGAGTATCAACAGGAATACTAGTACTAGTACTCCTACTCAACAGCAGGCATGAAGAGACA
ACCATCTCCTCAAACTCAAAGTGGGGGTCCAGCAGGTAGTCGGTTCGGCTTCGAGGCCATTTC-TGGCGTT-GTTTAGCA
CGGCCACCCAAGGAACATGGCCGTGCCATTAGAAAAAACCC-CACCAAGTAGTGTGATGCCATTTTTCTACTTTGGCCAA
GGCCTCCTTTCTGGACAACGCACCACTCAGACCAATG--------TTATTTAGCTTGACTGACTCGCCCGTCACCCAACC
ACTTCGACGCAAACCAAGCCAGCTATAAAACCGCGCGCCAGCTAAACGCCCCCATTCAACACCGACCAGCACCATCACTG
CTTGGAAGGTTCAAATCTCCCAGCACTACTTGGTCTTGAAGGAAAGTGAGAGGCAAAAGCAGAGGAGTGACTTTGCCCGT
AGCCCGCCGCCGGCCATGGCCTCCTACGACAAGGCCATGGAGTCGTACAAGAAGGCCGTCACCACGGCGGCCTCCCTCGC
GGCGTCCGCGATGCTGGTGCGGGGCGTCGTCAACGAGCTGGTGCCCTACGAGGTGCGTGACCTGCTCTTCTCCGGCATGG
GCTACCTTCGCTCGCACATGTCCTCCCAGCACACCATCATCATAGAGGAGACCGAGGGGTGGGCCAACAACCAGCTCTAC
GACGCCGCGCGGGCGTACCTGGCGACGCGGATCAACACCGACATGCAGCGCCTCCGGGTCAGCCGCGTCGACGAGACCAA
GAGCATGATGTTCAGCATGGAGGAGGGCGAAGAGATGGCCGATGTCCATGAGGGCACCGAGTTCAAGTGGCGCCTTGTCT
GCCGGGACAACTCCAGCGCCAGCAGCAGCAACACCAACGGCCGTGGCGGCAGCGGCAATTTCAAGCTTGAGGTCCGGTCC
TTCGAGATGAGCTTCCACAGGAAGCACAAGGACAAAGCACTTACCTCCTACCTCCCTCACATCCTCGCCGTGGCCAAGAA
AATCAAAGAGCAGAACAGGACGCTCAAGATCTACATGAACGAAGGTGAGTCATGGTTTGCCATTGATCTCCACCACCCAT
CAACCTTCAGCACGCTTGCCATGGATCACAAGCTCAAGCAGTCAGTCATGGATGATCTCGAGAGGTTTGTCAAGAGAAAG
GAATACTACAAGAAGATCGGCAAGGCATGGAAACGAGGGTACCTGCTGTATGGCCCACCTGGGACTGGCAAGTCAAGCAT
GATTGCAGCAATGGCCAATTACCTCAAATTTGATGTATATGATCTTGAGCTCACTGAGGTCAACTGGAACTCAACACTTC
GGAGGTTGCTCATCGGGATGACCAACCGGTCAATTCTTGTCATTGAGGACATCGACTGCACTGTCGAGCTGCAACAGCGG
GAGGAAGGTCAGGAGGGCACCAAATCCAACCCTTCAGAGGACAAGGTTAGATAGATACTTGGAATGATATTTCCCTTGCA
TTGCTTAGTTCC--TTAGTTTTCTTTCCATTCTGATGTCCTATGTGCTATCTCCAACAGGTGACACTATCCGGGCTACTC
AACTTCGTTGATGGGCTTTGGTCAACAAGTGGGGAGGAGAGGATAATTATCTTCACAACAAACTACAAAGAAAGGCTCGA
TCCTGCGCTTCTGCGCCCTGGCAGGATGGACATGCACATTCACATGGGGTACTGCTGCCCAGAGTCGTTCCGAATCTTGG
CCTCCAACTACCACTCTATAGATCACCATGCCACATACCCGGAGATAGAAGAATTGATCAAGGAGGTCATGGTGACTCCA
GCAGAGGTCGCAGAGGTGCTCATGAGGAATGAAGAGACGGACGTCGCACTCAAAGGT----CTTATCCAGTTCCTCAAGA
GAAAGAAAGATGGCGCTGGCAAACCGGAAAATGTGGACCAGGTGGCGAAGGAGGAAGAACAAGAGAAGGAGATGATGACG
AA--------------------------------------------------------AAGTGATGTCCCAGATAATGAA
GAT---CAGCAAGATGGGAGCAAAGA---ATGATGTGTATACAGTGTGAATATCATACAATTAGTGCCAGGAACTTCGAG
CAACAATGTATCATTTTGCTATAATAAGAGATCAATTTTGGTAACAATAAAATAATCTGGTATTGTGAACAGTTATACTA
TTTGAGTGCATATAAACCCAGTTATGAACTCAGTATTGGTA---GTTATTTCAATGCAGAAATACTGTTCAATATAAGCA
GTCAACAAGGTTGAAATAATCAATTTTGTCAAGACTCAAACCTAATGTTTTTAGAGGAAACTTAGCATGTCTGGCTTCTA
ATAACACTTCTCCAAATCAGTCTTCAGTACAAGTGTTCACACCATTTTCTTCTCGTAGGTCATACTCGACAATTAGACCA
AGATTGTCAACAAACTTGTGATACACCTGGCACCCTGCACACTGTGTGTGCAGTGCATGTTAGAAAATAATGAACAGCAT
ATCTCCGAAAATAAATGAGCATAGACATGGTCTTGTTTTAATAC-----TAAAAAAGAGAGCGGTAGGCAGATAAGGTCC
GTACTAATATAAGCAAAGCTGTTGGCTGTACAAAT---TAAGTAA--ATAAACACACTGAACAATTTACCTGAAGAAAAA
CTGTTCCTCTTTCATAGCCCACCCTGTTTATCAAACGTTTTGTCCTTGCATCACATTTATTACATGTAAACTGAACAAGC
AAGCTTCTTCTAGGAAGCTTTATATCAAAACTAGCTTCCTGCAATATCACATAAGAAATGTATGTTGTTTTAAAGCCATT
CCAGCCAACCGGTTAATCCGCGGTATGATGCTTCAATTTCAGGGATAATAGGTAAATGGTGTAAAAAA-TACAGAAGTAA
GATTCAATCAAAAGTATCACCATTTCAAAGTGACTCAACCACCATTGAGAACAAGAG----TTCTGTTCAGTTATTCCCA
CCAGTGTGGCAACAAGTGTGTTTTCATACAATACAATTCACTCTGTTACTCCCTCCTTCCCAAAATATAAGGCGTCAGTT
GACTTTTCCAG
>chr3A_1
TGCTACTCGGGCGTCAACCGTTGTTAGTCAGCAGCAGCCGGACTCTCGCATACGCCGGGCATGGAAACGTGACGGGGACA
CGAGACCAAAAGGAAACACGTAGTATAGACGGTTGTGAGAGCTGCAGAAAATTCCTATGGAAACTCGCCGCCAACTGCCG
ACAGCTACAAGTGGCAGACTATTCATCACGCAAACTTGGCCGTCAAGTCTATGCAGACAGTTGTAAACTTGCTTTACCCT
GCACAA--------GGCTCCAAAAAAGCAT-CAAAAAACGTCATTGTGCGTGTGCATTTGCAAGGGTTTCCCCGCAACCA
TCCCATCTGTGCCTGTCAGGCAGCATGTTAATCGTGCATACGTGTTCCTCGTGTGGTGCAACTTCAACAAATTTGAACAG
AGCGCCCAGTAATAAAAAGCAAATACGAACAGGAAATTCACCCGTTTGTGTA-TGCATTCTTTTACAGCGCCTGACAGCA
CC-AAAACAAAAGCATGTGCTTTCACTACCGTGGGCCCTGGAAA------------------------------------
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------------------------------------------CAAATATGCTCATGATTCTCAAGCACATACTACATCAT
TGGTTTGTCGACAACGCATTCTAGTATCAACAGGAATACTAGTACTAGTACTCCTACTCAACAGCAGGCATGAAGAGACA
ACCATCTCCTCAAACGCAAAGTGGGGGTCCAGCAGGTAGTCGGTTCGGCTTTGAGGCCATTTC-TAGCGTTTGTTTTGCA
CGGCCACCCAAGGAACATGGCCGTGCCATTAGGAAAAAACC-CACCAAGTAGTGTGATGCCATTTTTCTACTTTGGCCAA
GGCCTCCTTTCTGGACAACGCACCACTCAGACCAATACTACAGTATTATTTAGCTTGACTGACTCACCCGTCATCCAACC
ACTTCCACGCAAACCAAGCCAGCTATAAAACCGCGCGCCAGCTAAACGCCCCCATTCAACACCGACCAGCACCATCACTG
CTTGGAAGGTTCAAATCTCCCAGCACTACTTGGTCTTGAAGGAAAGTGAGAGGCGAAAGCAGAGGAGTGACTTTGCCCCT
AGCCCGCCGCCGGCCATGGCCTCCTACGACAAGGCCATGGAGTCGTACAAGAAGGCCGTCACCACGGCGGCCTCCCTCGC
GGCGTCCGCGATGCTGGTGCGGGGCGTCGTCAACGAGCTGGTGCCGTACGAGGTGCGTGACCTGCTCTTCTCCGGCATGG
GCTACCTTCGCTCGCACATGTCGTCCCAGCACACCATCATCATAGAGGAGACCGAGGGGTGGGCCAACAACCAGCTCTAC
GACGCCGCCCGGGCGTACCTTGCGACGCGGATCAACACCGACATGCAGCGCCTCCGGGTCAGCCGCGTCGACGAGACCAA
GAGCATGATGTTCAGCATGGAGGAGGGCGAAGAGATGGCCGATGTCCATGAGGGCACCGAGTTCAAGTGGCGCCTTGTCT
GCCGGGACAACTCCAGCGCCAGCAGCAGCAACGCCAACGGCCGTGGCGGCAGCGGCAATTTCAAGCTTGAGGTCCGGTCC
TTCGAGATGAGCTTCCACAGGAAGCACAAGGACAAAGCACTTACCTCCTACCTCCCTCACATCCTCGCCGTGGCCAAGAA
AATCAAAGAGCAGAACAGGACGCTCAAGATCTACATGAACGAAGGTGAGTCATGGTTTGCCATTGATCTCCACCACCCAT
CAACCTTCAGCACGCTTGCCATGGATCACAAGCTCAAGCAGTCAGTCATGGATGATCTCGAGAGGTTTGTCAAGAGAAAG
GAATACTACAAGAAGATCGGCAAGGCGTGGAAACGAGGGTACCTGCTGTATGGCCCACCTGGGACTGGCAAGTCAAGCAT
GATTGCAGCAATGGCCAATTACCTCAAATTTGATGTATATGATCTTGAGCTCACTGAGGTCAACTGGAACTCAACACTTC
GGAGGTTGCTCATCGGGATGACCAACCGGTCAATTCTTGTCATTGAGGACATCGACTGCACTGTCGAGCTGCAACAGCGG
GAGGAAGGTCAGGAGGGCACCAAATCCAACCCTTCAGAGGACAAGGTTAGATAGACACTTGGAATGATACTTCCCTTGCA
TTGCTGAGTTCCTATTAGTTTTCTTTCCATTCTGATGTCCTATGTGCTATCTCCAACAGGTGACACTATCCGGGCTACTC
AACTTCGTTGATGGGCTTTGGTCAACAAGTGGGGAGGAGAGGATAATTATCTTCACAACAAATTACAAAGAAAGGCTCGA
TCCTGCGCTTCTGCGCCCTGGCAGGATGGACATGCACATTCACATGGGGTACTGCTGCCCAGAGTCGTTTCGAATCTTGG
CCTCCAACTACCACTCTATAGATCACCATGCCACATACCCGGAGATCGAAGAATTGATCAAGGAGGTCATGGTGACTCCA
GCAGAGGTCGCAGAGGTGCTCATGAGGAATGAAGAGACGGACGTCGCACTTGAAGGT----CTTATCCAGTTCCTCAAGA
GAAAGAAAGATGGCGCTGGCAAACAGGAAAATGTGGACCAGGTAGCAAAGGAGGAAGAACAAGAGAAAGAGATGATGACA
AA--------------------------------------------------------AAGTGATGTTCCAGACAATCAA
GAT---CAGCAAGATGGGAGCAAAGA---ATGATGTGTATACAGTGCGAATATCGTACAATTAGTGCCAGGAACTTCGGG
CAACAATGTATCATTTTGCTATAATAAGAGATCAATTTTGGTAACAATAAGATAATCTGGTATTGTGAACAGTTATACCA
TTTGAATGCATATTAACCCAGTTATGAAATGAGTATTGGTA---GCTATTTCAATGCAGAAATACTGTTCAATATAAGCA
GTCTACAAGATTCAAATAATCAATTTTGTCAAGACTCAAACCTAATGATTTTAAAGGAAACTTAGCATGTCTGGCTTCTA
ATAACACAT-TCCAAATCAGTCTTCAGTACAAGTGTTCACCCCATTTTCTTCTCGTAGGTCATACTCGACAATTAGACCA
AGATTGTCAACAAACTTGTGATACACTTGGCACCCTGCGCACTGTGTGTGCAGTGCATGTTAGAAAATAATGAGCAGCAT
ATCTCAGAAAATAAATGAGCATAGACATGGTCTTGTTTTAATA---T--TAAAAAAGAGAGTGGTAGGCAGATAAGGTCC
GTACTAATATAAGCAAAGCTGCTGGCTGTACAAAT---TAAGTAAATATAAACACACTGAACAATTTACCTGAAGAAAAA
CTGTTCCTCTTTCATAGGCCACCCTGTTTATCAAACGTTTTGTCCTTGCGTCACATTTATTACATGTAAACTGAACAAGC
AAGCTTCTTCTAGGCAGCTTTATATCAAAACTAGCTTCCTGCGATATCACATAAGAAACGTAGGTTGTTTTAAAGCTATT
CTAGTCAACCGGTTAATCCGCAGTATGATGCTTCAATTTCAGCGATAATAGGTAAATGGTGTAAAAAA-TGCAGAAATAA
TATTCAATCAAAAGTATCACCATTTCAAAATGACTCA-CCATCATCGAGAACAAGAGTTATTTCTGTTCATTTATTCCCA
CCAGTGTGACAACAAGTGTGTTCTCATACAATACAATT------------------------------------------
-----------
>chr3B_1
TGCTACTCGGGCGTCAACCGTTGTTAGTCAGCAGCAGCCGGACTCTCGCATACACGGGGCATGGAAACGTGACGGGGCCA
TGAGACCAAAAGGAAACACGTAGTA--GACGGTTGTGAGAGCTGCAGAAATTTCCTATGGAAACTCGCAGCCAACTGCCG
ACAGCTACAAGTGGCAGACTATTGATCACGCAAACTTGGCCGTCAAGTCTATGCAGACAGTTGTAAACTTGCTTTACCCT
GCACAACAGCACAAGGCTCCAAAAAAAGCA-TAAAAAACGTCATTATGCGTGTGCATTTGCAAGGGTTTTCCCGCAACCA
TCCCATCTCTGTCTATCAGGCAGCATGTTAATCGTGCATACGTATTCCTGGTGTGGTGCAACTTCAACAAATTTGAACAG
AGTGACCAATAATAAAAAGCAAATTCGAACAGGAAATTCACCCGTTTGTGTA-TACATTCTTTAACAGCGCCTGACAGCA
CC-AAAACCAAAGCACGTGCTTTCACTACCGGGGGCCTTGGAAAACATCCTTAGGCTGGTCACAATGGGGAGGAACTTAG
AAGTAACATCACACACTCCAATACAACTTTGCTTATGTGGCACGTATTTAATGAAGAGAGAGGTACTTGTGGTAACTAGT
TAAGTTACCGGAACATCACACACTCCAAGAAACAATGAGTCTATAACCTAATAAATACATCCTTGCATGACACTACATAA
ATGTTCCTACCCACTATGGAGGTAGTAACATAGTCTAGGGAAGTGTGAAGTTATTAGCTTATGTTCTTGCCCATTGTGAC
CAGCCTTAAAAAACATTTAGATGTGAATTAGACAAACTGAAACAAATATGCTCATGATTCTCAAGCACATACTACATCAT
TGGTTTATCGAGTACGCATTCGAGTATCAACAGGAATACTAGTACTAGTACTCCTACTCAACAGCAGGTATAAAGAGACA
ACCATCTCCTCAAACTC-AAGTGGGGGTCCAGCAGTTAGTCGGTTCGGCTTTGAGGCCATTTGTTAGCGTTTGTTTTGCA
CGGCCACCCAAGGAACATGGCCGTGCCATTAGAAAAAAAAAACACCAAGTAGTGTGATGCCATTTTTCTACTTTGGCCAA
GGCCTCCTTTCTGGA-AACGCACCACTCAGACCAATAC---AGTATCATTTAGCTTGACTGACTCGCCCGTCACCCAACC
ACTTTGACGCAAACCAAACCAGCTATAAAACCTCGCGCCAGCTAAACGCCCCCATTCAACACCGACCAGCACGATCACTG
CTTGGAAGGTTCAAATCTCCCAACACTACTTGGTCTTGAAGGAAAGTGAGAGGCGAAAGCAGAGTAGTGACTTTGCCCGT
AGCCCGCCGCCGGCCATGGCCTCCTACGACAAGGCCATGGAGTCGTACAAGAAGGCCGTCACCACGGCGGCCTCCCTCGC
GGCGTCCGCGATGCTGGTGCGCGGCGTCGTCAACGAGCTGGTGCCGTACGAGGTGCGTGACCTGCTCTTCTCCGGCATGG
GCTACCTTCGCTCGCACATGTCCTCCCAGCACACCATCATCATAGCGGAGACCGAGGGGTGGGCCAACAACCAGCTCTAC
GACGCCGCGCGGGCGTACCTGGCGACGCGGATCAACACCGACATGCAGCGCCTCCGGGTCAGCCGCGTCGACGAGACCAA
GAGCATGATGTTCAGCATGGAGGAGGGCGAAGAGATGGCCGATGTCCATGAGGGCACCGAATTCAAGTGGCGCCTTGTCT
GCCGGGACAACTCCAGCGCCAGCAGCAGCAACGGCAATGGCCGTGGCGGCAGCGGCAATTTCAAGCTTGAGGTCCGGTCC
TTCGAGATGAGCTTCCACAGGAAGCACAAGGACAAAGCACTTACCTCCTACCTCCCTCACATCCTCGCCGTGGCCAAGAA
AATCAAAGAGCAGAACAGGACGCTCAAGATCTACATGAACGAAGGTGAGTCGTGGTTTGCCATTGATCTCCACCACCCAT
CAACCTTCAGCACGCTTGCCATGGATCACAAGCTCAAGCAGTCAGTCATGGATGATCTCGAGAGGTTTGTCAAGAGAAAG
GAATACTACAAGAAGATCGGCAAGGCATGGAAACGAGGGTACCTGCTGTATGGCCCACCTGGGACTGGCAAGTCAAGCAT
GATTGCAGCAATGGCCAATTACCTCAAATTTGATGTATATGATCTTGAGCTCACTGAGGTCAACTGGAACTCAACACTTC
GGAGGTTGCTCATCGGGATGACCAACCGGTCAATTCTTGTCATTGAGGACATCGACTGCACTGTCGAGCTGCAACAGCGG
GAGGAAGGCCAGGAGGGCACCAAATCCAACCCTTCAGAGGACAAGGTTAGATAGATACTTGGAATGATATTTCCCTTGCA
TTGCTTAATTCCTTG--GTTTTCTTTCCATTCTGATGTCCTATGTGCTATCTCCAACAGGTGACACTATCCGGGCTACTC
AACTTCGTTGATGGGCTTTGGTCCACAAGTGGGGAGGAGAGGATAATTATCTTCACAACAAACTACAAAGAGAGGCTCGA
TCCTGCGCTTCTGCGCCCTGGCAGGATGGACATGCACATTCACATGGGGTACTGCTGCCCAGAGTCGTTTCGAATCTTGG
CCTCCAACTACCACTCTA-AGATCACCATGTCACATACCCGGAGATCGAAGAAATGATCAAGGAGGTCATGGTGACTCCA
GCAGAGGTCGCAGAGGTGCTCATGAGGAATGAAGAGACGGACGTCGCACTCAAAGGT----CTTATCCAGTTCCTCAAGA
GAAAGAAAGATGGTGCTGGCAAACCGGAAAATGTGGACCAGGTAGCGAAGGAGGAAGAACAAGAGAAAGAGATGATGGCA
CA--------------------------------------------------------AAGTGATGTTCCAGACAATCAA
GAT---CAGCAAGATGGGAGCAAAGA---ATGATGTGTATTTAGTGCGAATATCATACAATTAGTGCCAGAAACTTCGAG
CAACAATGTATCATTTTGCTATAATAAGAGATCAATTTTGGTAACAATAAGATAATCTGGTATTGTGCACAGTTATACTA
TTTGAGTGCATATAAACCCAGTTATGAAATGAGTATTGGTA---GCTATTTCAATGCAGAAATACTGTTCAATATAAGCA
GTCTACAAGGTTCAAATAATC-----TGTCAAGACTCAAACCTAATGTTTTTAGAGGAAACTTAGCATGTCTGGCTTCTA
ATAACACAT-TCCAAATCAGTCTTCAGTACAAGTGTTCACCCCATTTTCTTCTCGTAGGTCATACTCGACAATTAGACCA
AGATTGTCAACAAACTTGTGATACACCTGGCACCCTGCGCACTGTGTGTGCAGTGCATGTTAGAAAATAATAAGCAGTAT
ATCTCACAAAATAAATGAGCACAGACATGGTCTTGTTTTAATA---T--AAAAAAAGAGAGTGGTAGGCAGATAAGGTCC
GTACTAATATAAGCAAAGCTGCTGGCTGTACAAAT---TAAGTAAATATAAACACACTGAACAATTTACCTGAAGAAAAA
CTGTTCCTCTTTCATAGGCCACCCTGTTTATCAAACGTTTTGTCCTTGCATCACATTTATTACATGTAAACTGAACAAGC
AAGCTTCTTCTAGGCAGCTTTATATCAAAACTAGCTTCCTGCAATATGACATAAGAAACGTATGTTGTTTTAAAGCTATT
CTAGTCAACCGGTTAATCCGCAGTATGATGCTTCAATTTCAGCGATAATAGGTAAATGGTGTAAAAAAATACAGAAATAA
TATTCAATCAAAAGTATCACCATTTCAAAATGACTCA-CCATCATCGAGAACAAGAGTTATTTCTGTTCACTTATTCCCA
CCAGTGTGACAACAAGTGTGTTTTCATACAATACAATT------------------------------------------
-----------
>chr1D_2339
AAATGATTGATGTGTATACAGTGTGAATATCATACAACTAAATCGAAGAACTTCCAGCAACAATATATCATTTTACTATA
ATATGAGATCAATTTTGGTAACAATAAGATAATCTGCTATTGTGAACTGTGATACCATTTGAGTGCATATAAACTCAGTT
ATGAACTGAGTAAGCTATTTGAATGCACAAATAATGTTCAATATAAGCAGTCTACAAGGTTCAAATAATCAGTCTACAAG
TATTTGTGCATTGAAATATAAGCAGTCTCCA-------------------------------------------------
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GCAGAGGTAGCAGAGGTGCTCATGAGGAACGAAGTGACAGACATCGCACTTGAAGGTCTTACTTATCCAGTTCCTCAAGA
GAAAGAAAGATGGTGCTGGCAAAACAGAAAATGTGGACCAGGTGGCCAAGGAGGAAGAACAAGAGATAGAGATGATGACA
AA--------------------------------------------------------AAATGATGTCCCAGACAATCAA
GATAACCAGCAAGATGGGAGCAAAGA---ATGATGTGTATATAGTGTGAATATCATACAGTTAGTGCCAGGAACTTCCAG
CAACTATGTATCATTTTGCTATAATAAGAGATCAATTTTGATAACAATAAGATAATCTGGTACTGTGCACTGTGATACTA
T-TGAGTGCATGTAAGCTCAGTTATGAACTGAGTA-----A---GTTATTTCAATGCACAAATATCGTTCAATATAAGCA
GTCTACAAGGTTCCAATAATCAATGTTGTCAAAAC----------------TAGAGGAAACCTAGCATGCCTGGCTTCG-
----CACAT-TCCAAATCAGTCTTCAGTACAAGTGTTCACCCCATTTTCTTCTCGTAGGTCATACTCGACAATTAGGCCA
AGATTGTCAACAAACTTGTGATACACCTGGCACCCAGCGCACTGTGTGTGCAGTGCATGTTAGAAAGTAATGAACAGCAT
ATCTCAGAAAATAAATGAGAATAGACATGGACTTGTTTAATA--TTAAAAAAAAGAGAGCGCGGTAGGCAGATAAGGTCA
GTACTAATATAAGCAAAGCTGCTGGATGTACAATGTAATAAGTAA--ATAAACACGCTGAACAATTTACCTGAAGAAAAA
CGGTTCCTCTTTCATAGGCCACCCTGTTTATCAAACGCTCTGTCCTTGCATCACATTTAGTACATGTAAACTGAACAAGC
AAGCTTCTTCTAGGAAGCTTTATATCAAAACTAGCTTCCTGCAATATCACATAAGAAACACATGTTGTTTTAAAGCCATT
CTAGACAACAGGTTAATCCACAGTATGATGATTCAATTTCA---------------------------------------
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>chr1A_2339
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---------------------------------------------------------------------------CTCCA
GCAGAGATAGCAGAGGTGCTCATGAGGAATGAAGAGACAGACATCACACTCGAAGGTCTTACTTATCCAGTTCCTCCAGG
GAAAGAAAGATGGCGCTGGCAAAACAGAAAATGTGGACCAGGTGGCCAAAGAGGAAGAACAAGAGAGAAGTGATGTTCCA
GACAATCAAGATCAGCAAGATAGGAGGACCAGGTGGCCAAAGAGGAAGAACAAGAGAGAAGTGATGTTCCAGACAATCAA
GAT---CAGCAAGATAGGAGTA----------ATGTGTATACAATGCGAATATCATACAATTAGTGCCAGGAACTTCCAG
CAACAATGTATCGTTTTTCTATAAC--GATATCAATTTTGGTAACAATAAGGTAATCTGGTATCGTGAATTGTGATACAA
TTTGAGTGCATACAAACCAAGTTATGAACTGAGTA-----AGCTGCTATTTCAATGCACAAATACTGTTCAATATAAGCA
GTCTACAAGGTTCAAATAGTCAATGTAGTCAAAACTCAAACCTAGTATATTTAAAGGAAACTTAGCATGCCTGGCTTCTA
TG-ACACAT-TCCAAATCAGTCTTCAGTACAAGTGTTCACCCCATTTTCTTCTCGTAGGTCATACTCGACAATTAGGCCA
AGATTGTCAACAAACTTGTGATACACCTGGCACCCAGCGCACTGTGTGTGCAGTGCATGTTAGAAAGTAATGAACAGCAT
ATCTCAGAAAATAAATGAGAATAGACATGGACTTGTTTAATA--TTA--AAAAAGAGAGCGCGGTAGGCAGATAAGGTCA
GTACTAATATAAGCAAAGCTGCTGGATGTACAATGCAAT---TAA--ATAAATACTCTGAACAATTTACCTGAAGAAAAA
CTGTTCCTCTTTCATAGGCCACCCTGTTTATCAAACGCTCTGTCCTTGCATCACATTTAGTACATGTAAACTTCACAAGC
AAGCTTCTTCTAGGAAGCTTTATATCAAAACTAGCTTCCTGCAATATCAGATAAGAAACATATGTTGTTTTAAAGCCATT
CTAGACAACAGGTTAATCCGCAGTATGACGATTCAATTTCA---------------------------------------
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>chr1B_2401
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-------------------------------------------------------------CTTATCCAGTTCCTCCAGG
GAAAGAAAGATGGCGCTGGCAAAACAGAAAATGTGGAGCAGGTGGCCAAAGAGGAAGAAAAAGAGA-------------A
AA--------------------------------------------------------AAGTGATGTTCCAGACAATCAA
GAT---CAACAAGATGGGAGCAAAGAATGATGATGTGCATACAGTGCGAATATCATACAATTAGTGCCAGCAACTTCCAG
CAACAATGTATCGTTTTTCTATAATGAGAGCAAT-TTTTGGTAACAATAAGGTAATCTGGTATTGTGAATTGTGATACTA
TTTGAGTCCATATAAACCCAGTTATGAACTGAGTA-----AGCTGCTATTTCAATGCACAAATACTGTTCAATATAAGCA
GTCTACAAGGTTCAAATAGTCAATGTTGTCAAGACTCAAACCTAGTATATTTAGAGGAAACTTAGCATGCCTGGCTTCTA
TG-ACACAT-TCCAAATCAGTCTTCAGCACAAGTGTTCACCCCATTTTCTTCTCGTAGGTCATACTCGACAATTAGGCCA
AGATTGTCAACAAACTTGTGATACACCTGGCACCCAGCGCACTGTGTGTGCAGTGCATGTTAGAAAGTAATGAACAGCAT
ATCTCAGAAAATAAATGAGAATAGACATGGACTTGTTTAATACTTTT--AAAAAAAGAGTGCGGTAGGCAGGTAAGGTCA
GTACTAATATAAGCAAAGCTGCTGGATGTACAATGCAAT---TAA--ATAAATACTCTCAACAATTTACCTGAAGAAACA
CGGTTCCTCTTTCATAGGCCACCCTGTTTATCAAACGCTCTGTCCTTGCATCACATTTAGTACATGTAAACTGAACAAGC
AAGCTTCTTCTAGGAAGCTTTATATCAAAACTAGCTTCCTGCAATATCACATAAGAAATGTATG----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------
>SNPs
-------------------------------------------------SS----SS-----------------------
---------------------------------------S-----------------S----------------------
--------------------------------------------------------------------------------
---------------------------S--S-------------------------------------------------
------------------------------------------------------S-------------------------
---------------------------------------S------------S---------------SS----------
--S-----------------------------S-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------S-----------------------------
--------------------------------------------------------------------------------
---------------------------------------------------S-------------S----------S---
--------------------------------------S-----------------------------------------
------------------------------------S-------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------S-------------------------
--------------------------------------------------------------------------------
---------------------------------------------S----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------S-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------S----------
----------------------------------------------S---------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------S-----------S
-------------------------------------------------------------------------S---S--
--------------------------------------------------------------------------------
--------------------------------------------------S-----------------------------
------------------------------S-------------------------------------------------
---S--------S-------------------------------------------------------------------
-------S-S------------------------------S---------------------------------------
--------------------------------------S-----------------------------------------
-----S-------------------------------------S------------------------------------
---------------------S----------------------------------------------------------
-----------------S--------------------------------------------------------------
--------------------------------------------------------------------------------
-S--S----------------S--------------------S---------------------------------S---
S----------------------------S-------S---S---S------------------------S---------
--------S-----------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS
>forward_1012
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------CAGGTAGTCGGTTCGGCTTC----------------------------
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>reverse_2630
--------------------------------------------------------------------------------
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---------------------------------------------------------------------CCGAATCTTGG
CCTCCAACT-----------------------------------------------------------------------
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>forward_1157
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-----------------ACGCACCACTCAGACCAATG-------------------------------------------
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>reverse_2958
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-----------------------------------------------------------------------------GAA
GATCAGCAAGATGGGAGC--------------------------------------------------------------
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>forward_2687
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--------------------------CATGCCACATACCCGGAGATA---------------------------------
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>reverse_3962
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-----------------------------------------TCTGTTACTCCCTCCTTCCCA------------------
-----------
