>input_sequence_48492
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---------------------------------------------------ATGGCCTCCTACGACAAGGCCATGGAGTC
GTACAAGAAGGCCGTCACCACGGCGGCCTCCCTCGCGGCGTCCGCGATGCTGGTGCGGGGCGTCGTCAACGAGCTGGTGC
CGTACGAGGTGCGTGACCTGCTCTTCTCCGGCATGGGCTACCTTCGCTCGCACATGTCGTCCCAGCACACCATCATCATA
GAGGAGACCGAGGGGTGGGCCAACAACCAGCTCTACGACGCCGCCCGGGCGTACCTTGCGACGCGGATCAACACCGACAT
GCAGCGCCTCCGGGTCAGCCGCGTCGACGAGACCAAGAGCATGATGTTCAGCATGGAGGAGGGCGAAGAGATGGCCGATG
TCCATGAGGGCACCGAGTTCAAGTGGCGCCTTGTCTGCCGGGACAACTCCAGCGCCAGCAGCAGCAACGCCAACGGCCGT
GGCGGCAGCGGCAATTTCAAGCTTGAGGTCCGGTCCTTCGAGATGAGCTTCCACAGGAAGCACAAGGACAAAGCACTTAC
CTCCTACCTCCCTCACATCCTCGCCGTGGCCAAGAAAATCAAAGAGCAGAACAGGACGCTCAAGATCTACATGAACGAAG
GTGAGTCATGGTTTGCCATTGATCTCCACCACCCATCAACCTTCAGCACGCTTGCCATGGATCACAAGCTCAAGCAGTCA
GTCATGGATGATCTCGAGAGGTTTGTCAAGAGAAAGGAATACTACAAGAAGATCGGCAAGGCGTGGAAACGAGGGTACCT
GCTGTATGGCCCACCTGGGACTGGCAAGTCAAGCATGATTGCAGCAATGGCCAATTACCTCAAATTTGATGTATATGATC
TTGAGCTCACTGAGGTCAACTGGAACTCAACACTTCGGAGGTTGCTCATCGGGATGACCAACCGGTCAATTCTTGTCATT
GAGGACATCGACTGCACTGTCGAGCTGCAACAGCGGGAGGAAGGTCAGGAGGGCACCAAATCCAACCCTTCAGAGGACAA
GGTTAGATAGACACTTGGAATGATACTTCCCTTGCATTGCTGAGTTCCTATTAGTTTTCTTTCCATTCTGATGTCCTATG
TGCTATCTCCAACAGGTGACACTATCCGGGCTACTCAACTTCGTTGATGGGCTTTGGTCAACAAGTGGGGAGGAGAGGAT
AATTATCTTCACAACAAATTACAAAGAAAGGCTCGATCCTGCGCTTCTGCGCCCTGGCAGGATGGACATGCACATTCACA
TGGGGTACTGCTGCCCAGAGTCGTTTCGAATCTTGGCCTCCAACTACCACTCTATAGATCACCATGCCACATACCCGGAG
ATCGAAGAATTGATCAAGGAGGTCATGGTGACTCCAGCAGAGGTCGCAGAGGTGCTCATGAGGAATGAAGAGACGGACGT
CGCACTTGAAGGT----CTTATCCAGTTCCTCAAGAGAAAGAAAGATGGCGCTGGCAAACAGGAAAATGTGGACCAGGTA
GCAAAGGAGGAAGAACAAGAGAAAGAGATGATGACAAAAAGTGATGTTCCAGACAATCAAGAT---CAGCAAGATGGGAG
CAAA----------------------------------------------------------------GA---ATGA---
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---------------------------------------------------
>chr3A_1_TraesCS3A01G215000
CTCGCATACGCCGGGCATGGAAACGTGACGGGGACACGAGACCAAAAGGAAACACGTAGTATAGACGGTTGTGAGAGCTG
CAGAAAATTCCTATGGAAACTCGCCGCCAACTGCCGACAGCTACAAGTGGCAGACTATTCATCACGCAAACTTGGCCGTC
AAGTCTATGCAGACAGTTGTAAACTTGCTTTACCCTGCACAA--------GGCTCCAAAAAAGCAT-CAAAAAACGTCAT
TGTGCGTGTGCATTTGCAAGGGTTTCCCCGCAACCATCCCATCTGTGCCTGTCAGGCAGCATGTTAATCGTGCATACGTG
TTCCTCGTGTGGTGCAACTTCAACAAATTTGAACAGAGCGCCCAGTAATAAAAAGCAAATACGAACAGGAAATTCACCCG
TTTGTGT-ATGCATTCTTTTACAGCGCCTGACAGCACCAAAA-CAAAAGCATGTGCTTTCACTACCGTGGGCCCTGGAAA
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------------------------------------------------------------------------------CA
AATATGCTCATGATTCTCAAGCACATACTACATCATTGGTTTGTCGACAACGCATTCTAGTATCAACAGGAATACTAGTA
CTAGTACTCCTACTCAACAGCAGGCATGAAGAGACAACCATCTCCTCAAACGCAAAGTGGGGGTCCAGCAGGTAGTCGGT
TCGGCTTTGAGGCCATTTC-TAGCGTTTGTTTTGCACGGCCACCCAAGGAACATGGCCGTGCCATTAGGAAAAAACC-CA
CCAAGTAGTGTGATGCCATTTTTCTACTTTGGCCAAGGCCTCCTTTCTGGACAACGCACCACTCAGACCAATACTACAGT
ATTATTTAGCTTGACTGACTCACCCGTCATCCAACCACTTCCACGCAAACCAAGCCAGCTATAAAACCGCGCGCCAGCTA
AACGCCCCCATTCAACACCGACCAGCACCATCACTGCTTGGAAGGTTCAAATCTCCCAGCACTACTTGGTCTTGAAGGAA
AGTGAGAGGCGAAAGCAGAGGAGTGACTTTGCCCCTAGCCCGCCGCCGGCCATGGCCTCCTACGACAAGGCCATGGAGTC
GTACAAGAAGGCCGTCACCACGGCGGCCTCCCTCGCGGCGTCCGCGATGCTGGTGCGGGGCGTCGTCAACGAGCTGGTGC
CGTACGAGGTGCGTGACCTGCTCTTCTCCGGCATGGGCTACCTTCGCTCGCACATGTCGTCCCAGCACACCATCATCATA
GAGGAGACCGAGGGGTGGGCCAACAACCAGCTCTACGACGCCGCCCGGGCGTACCTTGCGACGCGGATCAACACCGACAT
GCAGCGCCTCCGGGTCAGCCGCGTCGACGAGACCAAGAGCATGATGTTCAGCATGGAGGAGGGCGAAGAGATGGCCGATG
TCCATGAGGGCACCGAGTTCAAGTGGCGCCTTGTCTGCCGGGACAACTCCAGCGCCAGCAGCAGCAACGCCAACGGCCGT
GGCGGCAGCGGCAATTTCAAGCTTGAGGTCCGGTCCTTCGAGATGAGCTTCCACAGGAAGCACAAGGACAAAGCACTTAC
CTCCTACCTCCCTCACATCCTCGCCGTGGCCAAGAAAATCAAAGAGCAGAACAGGACGCTCAAGATCTACATGAACGAAG
GTGAGTCATGGTTTGCCATTGATCTCCACCACCCATCAACCTTCAGCACGCTTGCCATGGATCACAAGCTCAAGCAGTCA
GTCATGGATGATCTCGAGAGGTTTGTCAAGAGAAAGGAATACTACAAGAAGATCGGCAAGGCGTGGAAACGAGGGTACCT
GCTGTATGGCCCACCTGGGACTGGCAAGTCAAGCATGATTGCAGCAATGGCCAATTACCTCAAATTTGATGTATATGATC
TTGAGCTCACTGAGGTCAACTGGAACTCAACACTTCGGAGGTTGCTCATCGGGATGACCAACCGGTCAATTCTTGTCATT
GAGGACATCGACTGCACTGTCGAGCTGCAACAGCGGGAGGAAGGTCAGGAGGGCACCAAATCCAACCCTTCAGAGGACAA
GGTTAGATAGACACTTGGAATGATACTTCCCTTGCATTGCTGAGTTCCTATTAGTTTTCTTTCCATTCTGATGTCCTATG
TGCTATCTCCAACAGGTGACACTATCCGGGCTACTCAACTTCGTTGATGGGCTTTGGTCAACAAGTGGGGAGGAGAGGAT
AATTATCTTCACAACAAATTACAAAGAAAGGCTCGATCCTGCGCTTCTGCGCCCTGGCAGGATGGACATGCACATTCACA
TGGGGTACTGCTGCCCAGAGTCGTTTCGAATCTTGGCCTCCAACTACCACTCTATAGATCACCATGCCACATACCCGGAG
ATCGAAGAATTGATCAAGGAGGTCATGGTGACTCCAGCAGAGGTCGCAGAGGTGCTCATGAGGAATGAAGAGACGGACGT
CGCACTTGAAGGT----CTTATCCAGTTCCTCAAGAGAAAGAAAGATGGCGCTGGCAAACAGGAAAATGTGGACCAGGTA
GCAAAGGAGGAAGAACAAGAGAAAGAGATGATGACAAAAAGTGATGTTCCAGACAATCAAGAT---CAGCAAGATGGGAG
CAAA----------------------------------------------------------------GA---ATGATGT
GTATACAGTGCGAATATCGTACAATTAGTGCCAGGAACTTCGGGCAACAATGTATCATTTTGCTATAATAAGAGATCAAT
TTTGGTAACAATAAGATAATCTGGTATTGTGAACAGTTATACCATTTGAATGCATATTAACCCAGTTATGAAATGAGTAT
TGGTAG---CTATTTCAATGCAGAAATACTGTTCAATATAAGCAGTCTACAAGATTCAAATAATCAATTTTGTCAAGACT
CAAACCTAATGATTTTAAAGGAAACTTAGCATGTCTGGCTTCTAATAACACAT-TCCAAATCAGTCTTCAGTACAAGTGT
TCACCCCATTTTCTTCTCGTAGGTCATACTCGACAATTAGACCAAGATTGTCAACAAACTTGTGATACACTTGGCACCCT
GCGCACTGTGTGTGCAGTGCATGTTAGAAAATAATGAGCAGCATATCTCAGAAAATAAATGAGCATAGACATGGTCTTGT
TTTAATA---T--TAAAAAAGAGAGTGGTAGGCAGATAAGGTCCGTACTAATATAAGCAAAGCTGCTGGCTGTACAAAT-
--TAAGTAAATATAAACACACTGAACAATTTACCTGAAGAAAAACTGTTCCTCTTTCATAGGCCACCCTGTTTATCAAAC
GTTTTGTCCTTGCGTCACATTTATTACATGTAAACTGAACAAGCAAGCTTCTTCTAGGCAGCTTTATATCAAAACTAGCT
TCCTGCGATATCACATAAGAAACGTAGGTTGTTTTAAAGCTATTCTAGTCAACCGGTTAATCCGCAGTATGATGCTTCAA
TTTCAGCGATAATAGGTAAATGGTGTAAAAAA-TGCAGAAATAATATTCAATCAAAAGTATCACCATTTCAAAATGACTC
A-CCATCATCGAGAACAAGAGTTATTTCTGTTCATTTATTCCCACCAGTGTGACAACAAGTGTGTTCTCATACAATACAA
TTTAATGTTATATGATGGATGAATATTTACATCATTAAGCTTTCAGTCTAC
>chr3B_1
CTCGCATACACGGGGCATGGAAACGTGACGGGGCCATGAGACCAAAAGGAAACACGTAGTA--GACGGTTGTGAGAGCTG
CAGAAATTTCCTATGGAAACTCGCAGCCAACTGCCGACAGCTACAAGTGGCAGACTATTGATCACGCAAACTTGGCCGTC
AAGTCTATGCAGACAGTTGTAAACTTGCTTTACCCTGCACAACAGCACAAGGCTCCAAAAAAAGCA-TAAAAAACGTCAT
TATGCGTGTGCATTTGCAAGGGTTTTCCCGCAACCATCCCATCTCTGTCTATCAGGCAGCATGTTAATCGTGCATACGTA
TTCCTGGTGTGGTGCAACTTCAACAAATTTGAACAGAGTGACCAATAATAAAAAGCAAATTCGAACAGGAAATTCACCCG
TTTGTGT-ATACATTCTTTAACAGCGCCTGACAGCACCAAAA-CCAAAGCACGTGCTTTCACTACCGGGGGCCTTGGAAA
ACATCCTTAGGCTGGTCACAATGGGGAGGAACTTAGAAGTAACATCACACACTCCAATACAACTTTGCTTATGTGGCACG
TATTTAATGAAGAGAGAGGTACTTGTGGTAACTAGTTAAGTTACCGGAACATCACACACTCCAAGAAACAATGAGTCTAT
AACCTAATAAATACATCCTTGCATGACACTACATAAATGTTCCTACCCACTATGGAGGTAGTAACATAGTCTAGGGAAGT
GTGAAGTTATTAGCTTATGTTCTTGCCCATTGTGACCAGCCTTAAAAAACATTTAGATGTGAATTAGACAAACTGAAACA
AATATGCTCATGATTCTCAAGCACATACTACATCATTGGTTTATCGAGTACGCATTCGAGTATCAACAGGAATACTAGTA
CTAGTACTCCTACTCAACAGCAGGTATAAAGAGACAACCATCTCCTCAAACTC-AAGTGGGGGTCCAGCAGTTAGTCGGT
TCGGCTTTGAGGCCATTTGTTAGCGTTTGTTTTGCACGGCCACCCAAGGAACATGGCCGTGCCATTAGAAAAAAAAAACA
CCAAGTAGTGTGATGCCATTTTTCTACTTTGGCCAAGGCCTCCTTTCTGGA-AACGCACCACTCAGACCAATAC---AGT
ATCATTTAGCTTGACTGACTCGCCCGTCACCCAACCACTTTGACGCAAACCAAACCAGCTATAAAACCTCGCGCCAGCTA
AACGCCCCCATTCAACACCGACCAGCACGATCACTGCTTGGAAGGTTCAAATCTCCCAACACTACTTGGTCTTGAAGGAA
AGTGAGAGGCGAAAGCAGAGTAGTGACTTTGCCCGTAGCCCGCCGCCGGCCATGGCCTCCTACGACAAGGCCATGGAGTC
GTACAAGAAGGCCGTCACCACGGCGGCCTCCCTCGCGGCGTCCGCGATGCTGGTGCGCGGCGTCGTCAACGAGCTGGTGC
CGTACGAGGTGCGTGACCTGCTCTTCTCCGGCATGGGCTACCTTCGCTCGCACATGTCCTCCCAGCACACCATCATCATA
GCGGAGACCGAGGGGTGGGCCAACAACCAGCTCTACGACGCCGCGCGGGCGTACCTGGCGACGCGGATCAACACCGACAT
GCAGCGCCTCCGGGTCAGCCGCGTCGACGAGACCAAGAGCATGATGTTCAGCATGGAGGAGGGCGAAGAGATGGCCGATG
TCCATGAGGGCACCGAATTCAAGTGGCGCCTTGTCTGCCGGGACAACTCCAGCGCCAGCAGCAGCAACGGCAATGGCCGT
GGCGGCAGCGGCAATTTCAAGCTTGAGGTCCGGTCCTTCGAGATGAGCTTCCACAGGAAGCACAAGGACAAAGCACTTAC
CTCCTACCTCCCTCACATCCTCGCCGTGGCCAAGAAAATCAAAGAGCAGAACAGGACGCTCAAGATCTACATGAACGAAG
GTGAGTCGTGGTTTGCCATTGATCTCCACCACCCATCAACCTTCAGCACGCTTGCCATGGATCACAAGCTCAAGCAGTCA
GTCATGGATGATCTCGAGAGGTTTGTCAAGAGAAAGGAATACTACAAGAAGATCGGCAAGGCATGGAAACGAGGGTACCT
GCTGTATGGCCCACCTGGGACTGGCAAGTCAAGCATGATTGCAGCAATGGCCAATTACCTCAAATTTGATGTATATGATC
TTGAGCTCACTGAGGTCAACTGGAACTCAACACTTCGGAGGTTGCTCATCGGGATGACCAACCGGTCAATTCTTGTCATT
GAGGACATCGACTGCACTGTCGAGCTGCAACAGCGGGAGGAAGGCCAGGAGGGCACCAAATCCAACCCTTCAGAGGACAA
GGTTAGATAGATACTTGGAATGATATTTCCCTTGCATTGCTTAATTCCTTG--GTTTTCTTTCCATTCTGATGTCCTATG
TGCTATCTCCAACAGGTGACACTATCCGGGCTACTCAACTTCGTTGATGGGCTTTGGTCCACAAGTGGGGAGGAGAGGAT
AATTATCTTCACAACAAACTACAAAGAGAGGCTCGATCCTGCGCTTCTGCGCCCTGGCAGGATGGACATGCACATTCACA
TGGGGTACTGCTGCCCAGAGTCGTTTCGAATCTTGGCCTCCAACTACCACTCTA-AGATCACCATGTCACATACCCGGAG
ATCGAAGAAATGATCAAGGAGGTCATGGTGACTCCAGCAGAGGTCGCAGAGGTGCTCATGAGGAATGAAGAGACGGACGT
CGCACTCAAAGGT----CTTATCCAGTTCCTCAAGAGAAAGAAAGATGGTGCTGGCAAACCGGAAAATGTGGACCAGGTA
GCGAAGGAGGAAGAACAAGAGAAAGAGATGATGGCACAAAGTGATGTTCCAGACAATCAAGAT---CAGCAAGATGGGAG
CAAA----------------------------------------------------------------GA---ATGATGT
GTATTTAGTGCGAATATCATACAATTAGTGCCAGAAACTTCGAGCAACAATGTATCATTTTGCTATAATAAGAGATCAAT
TTTGGTAACAATAAGATAATCTGGTATTGTGCACAGTTATACTATTTGAGTGCATATAAACCCAGTTATGAAATGAGTAT
TGGTAG---CTATTTCAATGCAGAAATACTGTTCAATATAAGCAGTCTACAAGGTTCAAATAATC-----TGTCAAGACT
CAAACCTAATGTTTTTAGAGGAAACTTAGCATGTCTGGCTTCTAATAACACAT-TCCAAATCAGTCTTCAGTACAAGTGT
TCACCCCATTTTCTTCTCGTAGGTCATACTCGACAATTAGACCAAGATTGTCAACAAACTTGTGATACACCTGGCACCCT
GCGCACTGTGTGTGCAGTGCATGTTAGAAAATAATAAGCAGTATATCTCACAAAATAAATGAGCACAGACATGGTCTTGT
TTTAATA---T--AAAAAAAGAGAGTGGTAGGCAGATAAGGTCCGTACTAATATAAGCAAAGCTGCTGGCTGTACAAAT-
--TAAGTAAATATAAACACACTGAACAATTTACCTGAAGAAAAACTGTTCCTCTTTCATAGGCCACCCTGTTTATCAAAC
GTTTTGTCCTTGCATCACATTTATTACATGTAAACTGAACAAGCAAGCTTCTTCTAGGCAGCTTTATATCAAAACTAGCT
TCCTGCAATATGACATAAGAAACGTATGTTGTTTTAAAGCTATTCTAGTCAACCGGTTAATCCGCAGTATGATGCTTCAA
TTTCAGCGATAATAGGTAAATGGTGTAAAAAAATACAGAAATAATATTCAATCAAAAGTATCACCATTTCAAAATGACTC
A-CCATCATCGAGAACAAGAGTTATTTCTGTTCACTTATTCCCACCAGTGTGACAACAAGTGTGTTTTCATACAATACAA
TTTAATGTTATATGATGGATGAATATTTACATCATTAAGCTTTCGGTCTAC
>chr3D_14
-------------GGCATGGAAACGTGACGGGGACACGAGACCAAAAGGAAACACGTAGTA--GACGGTTGTGAGCGCTG
CAGAAATTTCCTACGGAAACTCGCAGCCAACTGCCGACAGCTACAA----------------------------------
--GTCTATGCAGACAGTTGTAAACTTGCTTTACCCTGCACAA--------GGCTCCAAAAAAGAATTTAAAAAACGTCAT
TATGCGTGTGCATTTGCAAGGGTTTTCCCGCAACCATCCCATCTGTGTCTATCAGGCAGCATGTTAATCGTGCATACGTG
TTCCTCGTGTAGTGCAACTTCAACAAATTTGAACAGAGTGCCCAATAATAAAAAGCAAATTCGAACAGGAAATTCGCCCG
TTTGTGTAATACATTCTTTTACAGTACCTGACAGCACCAAAAACAAAAGCATGTGCTTTCACTACCGGAGGCCTTGGAAA
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------------------------------------------------------------------------------CA
AATATGGTCATGATTCTCAAGCACATACTACATCATTGGTTTATCGACAACGCATTCGAGTATCAACAGGAATACTAGTA
CTAGTACTCCTACTCAACAGCAGGCATGAAGAGACAACCATCTCCTCAAACTCAAAGTGGGGGTCCAGCAGGTAGTCGGT
TCGGCTTCGAGGCCATTTC-TGGCGTT-GTTTAGCACGGCCACCCAAGGAACATGGCCGTGCCATTAGAAAAAACCC-CA
CCAAGTAGTGTGATGCCATTTTTCTACTTTGGCCAAGGCCTCCTTTCTGGACAACGCACCACTCAGACCAATG-------
-TTATTTAGCTTGACTGACTCGCCCGTCACCCAACCACTTCGACGCAAACCAAGCCAGCTATAAAACCGCGCGCCAGCTA
AACGCCCCCATTCAACACCGACCAGCACCATCACTGCTTGGAAGGTTCAAATCTCCCAGCACTACTTGGTCTTGAAGGAA
AGTGAGAGGCAAAAGCAGAGGAGTGACTTTGCCCGTAGCCCGCCGCCGGCCATGGCCTCCTACGACAAGGCCATGGAGTC
GTACAAGAAGGCCGTCACCACGGCGGCCTCCCTCGCGGCGTCCGCGATGCTGGTGCGGGGCGTCGTCAACGAGCTGGTGC
CCTACGAGGTGCGTGACCTGCTCTTCTCCGGCATGGGCTACCTTCGCTCGCACATGTCCTCCCAGCACACCATCATCATA
GAGGAGACCGAGGGGTGGGCCAACAACCAGCTCTACGACGCCGCGCGGGCGTACCTGGCGACGCGGATCAACACCGACAT
GCAGCGCCTCCGGGTCAGCCGCGTCGACGAGACCAAGAGCATGATGTTCAGCATGGAGGAGGGCGAAGAGATGGCCGATG
TCCATGAGGGCACCGAGTTCAAGTGGCGCCTTGTCTGCCGGGACAACTCCAGCGCCAGCAGCAGCAACACCAACGGCCGT
GGCGGCAGCGGCAATTTCAAGCTTGAGGTCCGGTCCTTCGAGATGAGCTTCCACAGGAAGCACAAGGACAAAGCACTTAC
CTCCTACCTCCCTCACATCCTCGCCGTGGCCAAGAAAATCAAAGAGCAGAACAGGACGCTCAAGATCTACATGAACGAAG
GTGAGTCATGGTTTGCCATTGATCTCCACCACCCATCAACCTTCAGCACGCTTGCCATGGATCACAAGCTCAAGCAGTCA
GTCATGGATGATCTCGAGAGGTTTGTCAAGAGAAAGGAATACTACAAGAAGATCGGCAAGGCATGGAAACGAGGGTACCT
GCTGTATGGCCCACCTGGGACTGGCAAGTCAAGCATGATTGCAGCAATGGCCAATTACCTCAAATTTGATGTATATGATC
TTGAGCTCACTGAGGTCAACTGGAACTCAACACTTCGGAGGTTGCTCATCGGGATGACCAACCGGTCAATTCTTGTCATT
GAGGACATCGACTGCACTGTCGAGCTGCAACAGCGGGAGGAAGGTCAGGAGGGCACCAAATCCAACCCTTCAGAGGACAA
GGTTAGATAGATACTTGGAATGATATTTCCCTTGCATTGCTTAGTTCC--TTAGTTTTCTTTCCATTCTGATGTCCTATG
TGCTATCTCCAACAGGTGACACTATCCGGGCTACTCAACTTCGTTGATGGGCTTTGGTCAACAAGTGGGGAGGAGAGGAT
AATTATCTTCACAACAAACTACAAAGAAAGGCTCGATCCTGCGCTTCTGCGCCCTGGCAGGATGGACATGCACATTCACA
TGGGGTACTGCTGCCCAGAGTCGTTCCGAATCTTGGCCTCCAACTACCACTCTATAGATCACCATGCCACATACCCGGAG
ATAGAAGAATTGATCAAGGAGGTCATGGTGACTCCAGCAGAGGTCGCAGAGGTGCTCATGAGGAATGAAGAGACGGACGT
CGCACTCAAAGGT----CTTATCCAGTTCCTCAAGAGAAAGAAAGATGGCGCTGGCAAACCGGAAAATGTGGACCAGGTG
GCGAAGGAGGAAGAACAAGAGAAGGAGATGATGACGAAAAGTGATGTCCCAGATAATGAAGAT---CAGCAAGATGGGAG
CAAA----------------------------------------------------------------GA---ATGATGT
GTATACAGTGTGAATATCATACAATTAGTGCCAGGAACTTCGAGCAACAATGTATCATTTTGCTATAATAAGAGATCAAT
TTTGGTAACAATAAAATAATCTGGTATTGTGAACAGTTATACTATTTGAGTGCATATAAACCCAGTTATGAACTCAGTAT
TGGTAG---TTATTTCAATGCAGAAATACTGTTCAATATAAGCAGTCAACAAGGTTGAAATAATCAATTTTGTCAAGACT
CAAACCTAATGTTTTTAGAGGAAACTTAGCATGTCTGGCTTCTAATAACACTTCTCCAAATCAGTCTTCAGTACAAGTGT
TCACACCATTTTCTTCTCGTAGGTCATACTCGACAATTAGACCAAGATTGTCAACAAACTTGTGATACACCTGGCACCCT
GCACACTGTGTGTGCAGTGCATGTTAGAAAATAATGAACAGCATATCTCCGAAAATAAATGAGCATAGACATGGTCTTGT
TTTAATAC-----TAAAAAAGAGAGCGGTAGGCAGATAAGGTCCGTACTAATATAAGCAAAGCTGTTGGCTGTACAAAT-
--TAAGTAA--ATAAACACACTGAACAATTTACCTGAAGAAAAACTGTTCCTCTTTCATAGCCCACCCTGTTTATCAAAC
GTTTTGTCCTTGCATCACATTTATTACATGTAAACTGAACAAGCAAGCTTCTTCTAGGAAGCTTTATATCAAAACTAGCT
TCCTGCAATATCACATAAGAAATGTATGTTGTTTTAAAGCCATTCCAGCCAACCGGTTAATCCGCGGTATGATGCTTCAA
TTTCAGGGATAATAGGTAAATGGTGTAAAAAA-TACAGAAGTAAGATTCAATCAAAAGTATCACCATTTCAAAGTGACTC
AACCACCATTGAGAACAAGAG----TTCTGTTCAGTTATTCCCACCAGTGTGGCAACAAGTGTGTTTTCATACAATACAA
TT-------------------------------------------------
>chr1D_2341
AAATGATTGATGTGTATACAGTGTGAATATCATACAACTAAATCGAAGAACTTCCAGCAACAATATATCATTTTACTATA
ATATGAGATCAATTTTGGTAACAATAAGATAATCTGCTATTGTGAACTGTGATACCATTTGAGTGCATATAAACTCAGTT
ATGAACTGAGTAAGCTATTTGAATGCACAAATAATGTTCAATATAAGCAGTCTACAAGGTTCAAATAATCAGTCTACAAG
TATTTGTGCATTGAAATATAAGCAGTCTCCA-------------------------------------------------
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------------------------------------GCAGAGGTAGCAGAGGTGCTCATGAGGAACGAAGTGACAGACAT
CGCACTTGAAGGTCTTACTTATCCAGTTCCTCAAGAGAAAGAAAGATGGTGCTGGCAAAACAGAAAATGTGGACCAGGTG
GCCAAGGAGGAAGAACAAGAGATAGAGATGATGACAAAAAATGATGTCCCAGACAATCAAGATAACCAGCAAGATGGGAG
CAAA----------------------------------------------------------------GA---ATGATGT
GTATATAGTGTGAATATCATACAGTTAGTGCCAGGAACTTCCAGCAACTATGTATCATTTTGCTATAATAAGAGATCAAT
TTTGATAACAATAAGATAATCTGGTACTGTGCACTGTGATACTA-TTGAGTGCATGTAAGCTCAGTTATGAACTGAGTA-
----AG---TTATTTCAATGCACAAATATCGTTCAATATAAGCAGTCTACAAGGTTCCAATAATCAATGTTGTCAAAAC-
---------------TAGAGGAAACCTAGCATGCCTGGCTTCG-----CACAT-TCCAAATCAGTCTTCAGTACAAGTGT
TCACCCCATTTTCTTCTCGTAGGTCATACTCGACAATTAGGCCAAGATTGTCAACAAACTTGTGATACACCTGGCACCCA
GCGCACTGTGTGTGCAGTGCATGTTAGAAAGTAATGAACAGCATATCTCAGAAAATAAATGAGAATAGACATGGACTTGT
TTAATA--TTAAAAAAAAGAGAGCGCGGTAGGCAGATAAGGTCAGTACTAATATAAGCAAAGCTGCTGGATGTACAATGT
AATAAGTAA--ATAAACACGCTGAACAATTTACCTGAAGAAAAACGGTTCCTCTTTCATAGGCCACCCTGTTTATCAAAC
GCTCTGTCCTTGCATCACATTTAGTACATGTAAACTGAACAAGCAAGCTTCTTCTAGGAAGCTTTATATCAAAACTAGCT
TCCTGCAATATCACATAAGAAACACATGTTGTTTTAAAGCCATTCTAGACAACAGGTTAATCCACAGTATGATGATTCAA
TTTCA---------------------------------------------------------------------------
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---------------------------------------------------
>chr1A_2341
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-------------------------------CTCCAGCAGAGATAGCAGAGGTGCTCATGAGGAATGAAGAGACAGACAT
CACACTCGAAGGTCTTACTTATCCAGTTCCTCCAGGGAAAGAAAGATGGCGCTGGCAAAACAGAAAATGTGGACCAGGTG
GCCAAAGAGGAAGAACAAGAGAG---------------AAGTGATGTTCCAGACAATCAAGAT---CAGCAAGATAGGAG
GACCAGGTGGCCAAAGAGGAAGAACAAGAGAGAAGTGATGTTCCAGACAATCAAGATCAGCAAGATAGGA---GTAATGT
GTATACAATGCGAATATCATACAATTAGTGCCAGGAACTTCCAGCAACAATGTATCGTTTTTCTATAAC--GATATCAAT
TTTGGTAACAATAAGGTAATCTGGTATCGTGAATTGTGATACAATTTGAGTGCATACAAACCAAGTTATGAACTGAGTA-
----AGCTGCTATTTCAATGCACAAATACTGTTCAATATAAGCAGTCTACAAGGTTCAAATAGTCAATGTAGTCAAAACT
CAAACCTAGTATATTTAAAGGAAACTTAGCATGCCTGGCTTCTATG-ACACAT-TCCAAATCAGTCTTCAGTACAAGTGT
TCACCCCATTTTCTTCTCGTAGGTCATACTCGACAATTAGGCCAAGATTGTCAACAAACTTGTGATACACCTGGCACCCA
GCGCACTGTGTGTGCAGTGCATGTTAGAAAGTAATGAACAGCATATCTCAGAAAATAAATGAGAATAGACATGGACTTGT
TTAATA--TTA--AAAAAGAGAGCGCGGTAGGCAGATAAGGTCAGTACTAATATAAGCAAAGCTGCTGGATGTACAATGC
AAT---TAA--ATAAATACTCTGAACAATTTACCTGAAGAAAAACTGTTCCTCTTTCATAGGCCACCCTGTTTATCAAAC
GCTCTGTCCTTGCATCACATTTAGTACATGTAAACTTCACAAGCAAGCTTCTTCTAGGAAGCTTTATATCAAAACTAGCT
TCCTGCAATATCAGATAAGAAACATATGTTGTTTTAAAGCCATTCTAGACAACAGGTTAATCCGCAGTATGACGATTCAA
TTTCA---------------------------------------------------------------------------
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---------------------------------------------------
>chr1B_2403
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-----------------CTTATCCAGTTCCTCCAGGGAAAGAAAGATGGCGCTGGCAAAACAGAAAATGTGGAGCAGGTG
GCCAAAGAGGAAGAAAAAGAGA-------------AAAAAGTGATGTTCCAGACAATCAAGAT---CAACAAGATGGGAG
CAAA----------------------------------------------------------------GAATGATGATGT
GCATACAGTGCGAATATCATACAATTAGTGCCAGCAACTTCCAGCAACAATGTATCGTTTTTCTATAATGAGAGCAAT-T
TTTGGTAACAATAAGGTAATCTGGTATTGTGAATTGTGATACTATTTGAGTCCATATAAACCCAGTTATGAACTGAGTA-
----AGCTGCTATTTCAATGCACAAATACTGTTCAATATAAGCAGTCTACAAGGTTCAAATAGTCAATGTTGTCAAGACT
CAAACCTAGTATATTTAGAGGAAACTTAGCATGCCTGGCTTCTATG-ACACAT-TCCAAATCAGTCTTCAGCACAAGTGT
TCACCCCATTTTCTTCTCGTAGGTCATACTCGACAATTAGGCCAAGATTGTCAACAAACTTGTGATACACCTGGCACCCA
GCGCACTGTGTGTGCAGTGCATGTTAGAAAGTAATGAACAGCATATCTCAGAAAATAAATGAGAATAGACATGGACTTGT
TTAATACTTTT--AAAAAAAGAGTGCGGTAGGCAGGTAAGGTCAGTACTAATATAAGCAAAGCTGCTGGATGTACAATGC
AAT---TAA--ATAAATACTCTCAACAATTTACCTGAAGAAACACGGTTCCTCTTTCATAGGCCACCCTGTTTATCAAAC
GCTCTGTCCTTGCATCACATTTAGTACATGTAAACTGAACAAGCAAGCTTCTTCTAGGAAGCTTTATATCAAAACTAGCT
TCCTGCAATATCACATAAGAAATGTA------------------------------------------------------
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---------------------------------------------------
>SNPs
---------S-S-------------------------------------------------S------------------
------S-----------------S----------------------------------S--------------------
---------------------------------------------------------------S---S------------
-S-----------------------S---------------------S--S-----------------------------
--------------------------------------S-----S---------------S-------------------
----------S--------------------------------------------------------S-----S------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------S--------------S----------------------
---------------------------------------------------S----------------------------
--------------------------------------------------------------------S-----------
--------------------------------------------------------------------------SSS---
---------------------S-------S-----------S--------------------------------------
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----------------------------------S---------------------------------------------
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----------------------------------------------------------S---------------------
--------------------------------------------S-----------S-----------------------
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--------------------------------------------------------------S-----------------
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-----------S-------------S---------------S-------S------------------------------
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------------------S-------------------------------------------------------------
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------------------------------------------------------------S-------------------
--S-----------------------------------------------------------------------------
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------------------S-----------------------S-------------------------------------
------------------------------------------S------S-------S----------------------
-----------------------------------------------------S--------------------------
-----------S--------------------------------------------------------------------
----------------------------------------------------------------------S---------
--------------------------------------------------------------------------------
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-------------S------------------------------------------------------------------
------S-------------------S-----------------------------------------------------
----------------------------------S---------------------------------------------
----------------------------------S-------------------------------S-------------
--------------------------------------------S------
>forward_291
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------AACCATCCCATCTGTGCCTG-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------
>reverse_1499
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------GTCCCAGCACACCATCATCA--
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------
>forward_1315
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------CAGAGGAGTGACTTTGCCCC---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------
>reverse_2346
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------CTTCCCTTGCATTGCTGAGT-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------
>forward_2063
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------ACAAGAAGATCGGCAAGGCG-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---------------------------------------------------
>reverse_3875
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------TTTATTCCCACCAGTGTGACA-------------------------
---------------------------------------------------
