>input_sequence_48479
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------ATGGCGGAGGAGCACCACGGCGCCG
GCGCCGGCTTCTGGCTGCCGGACGAGTTCCTCGACGACGACTTCTTCTCCGACGAGAAGGCGGCGGCCGCCGCGGCGGCG
G---CGGCGGCCAGGAGCGACAGCGACGACGAGGACGGGCTCGAAGGGCTCTCGCGCCGCGTGGCCGCCCTCGACTGCGA
CGCCGGCGACCGCGCCATTCCCAAGGTTGGTTTTCGGTTGCCGGACTCTCGTCTCCTCGTCTCGTCGCTTCTTGGCCTGG
TTTGGGTTGGCATCCCTGTTTGTTGTCTTTGGAAGCATCTGATTGGTTGTTGTTTCTCTCTGTCTCTGCGTGTCTCGCGC
TCCAGGCGGAGGTGATGTCTGGGTCTCCGCAGTCCACGCTCTGCGTGCTGCAGGCCTCCGGGGAGGACAGCCCCACCGGC
GGCGGCTCGCAGGTCAGCTCGCCGCCGTCCTCGCCGCTGGAGCAGCGGCCGGCCGACCCATGGGACCTCCTGCACGAGGC
CGCCGGGCAGGTGGCCCGCCTCGGCGTGGACAGCATCCCCGTGCCTGTTGTTAACCCTCCTCCCATCCACGGCGCCGGCG
TCGCGCCGCCGGCGAGGAAGCCCTCTCCGCCGCTGCTTCCCTCCCCAAAGCCCGTCGGCCCTTACCAGTACCCGCCGAAC
AACTCGCTCGCACAGCGCCAGGCCCAAGTCGCTCGTGTGAGTTCCTCTGTCTTCTCATGCACCGTGCCGGCCAACTCTTG
CGCTTCGTTTCTCGCCGGAGTGATTATTCTCTGACGTTTTGTATGGTTTCGGGTTTCAGTTCCATCTCCTGAAGCAGCAG
CAGCTGATGAAGCACCAGCGGGAGCAGCAGCTGGCGATGGCGGCGGCCATGGCGTGGGGTTCCGCCGACGTCGGGCCGC-
--TCGGGCTGAGCCCCTCGGCCTGGCCGCCGCTGCAGAAGTCCCCGCACCACGCCCCACCGTCCGCGGCCGGCATGCGCG
CCGTGTTCCTCACCCCTCCGGGGGCCAAGCGCGAGTGCACCGGCACCGGCGTGTTCATCCCCCGGCAGGCCGGCGCGCCC
GCCGAGCCCAAGAAGAAACCAAGTGCGCCCCCTTTCTCGCCCCCACTTCCTTTGCCTGCCCCTGTCATGTCCCCCAAAAG
TATT-CTTAGCTAAAAATCCTGTGGCTCTGCTCGGCCTCAGGCTGCTCCACGGTCCTCCTCCCGGCGCGCGTCG------
-TGCAGGCGCTCAACCTCAACGTCGAAGACCTCGGCGCCCGC--------CCGTGCTACCCCGGAGCCTTCGTTCTTGAT
CACGGTGAGCAATCAATCCCTTCTGATTACGCACGCACTAGCAACGCCAATGATAATCGCATCTTTATTTTGGGTTATGA
AGATCCGTCAATGACTGACATTTCGAACTCGTT-------TCTTTGTGTCCTCACAGACGCGCTGGTGAGCCGGAGCAAC
GCGGTGCAGGCGAGCCAGAAGCGCGAGCACAACGCCAACGCCAAT---GCCGCCGCCGCGCACTCCCCGCCGCTCGCCGT
GGCGTGCGAGGTCAATCTCCCGCCGGAGTGGACGTACTGA----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
>chr3A_1_TraesCS3A01G364600
GTGACATGAGACGAGTACAAACTCCTGGGGCCCGACGCGGGTCTCGTGACGCACAAGCTTCTTCGTCGCGCACGCCAACG
CGGCAGTAATTTAATCACCACCACAAATAAGTATCACCCGAATGGTGGCATTTCGGTGGGGGCACGCTGGTTTCCGCGTG
AAACCACTTCCGTGAATGGTCCTCTTAATAACGCGCTGATCTGCCTA-TAGATCGCACGTTCGATTCGGTCCGGTGCCTT
GGTGTGAACCCCATGCAACTTTCCGCTGTTCATACGATGTTGTTTCGTCGCACACCCAACACTGCA--------------
-----------------------------ACCAAAATCACGACAT----TGCGAACGCGACGCCAGACAATTATT-----
-------------GGTGCCATTTCCAGAGGCAAAAGTCACA-----TGAGTTGAGCTGAGGCTCAGCCAGAAGGGGTGAC
AGACACGACGCGGCGAGG-----TGAGGTGAAACTGAAACCTCTCCGCCAGACGTTGCGCATGAGGGGGGAGCCGTAAAG
CGCAGCGCGAAAAGAGCTGGTTATTTTGGCCAGGTTACCATACTTAACCCG-GCCGG--TTAGAAACGCGGCCCCGAGGA
G--GCGCACAACAAACACGCCGGCGCCACCACCACCGCAAACGCAATGGT-------------------AACCTTT----
--TACACTTTTGAACAAATCGCCCGGTAAATTTTGC--------------CCCCCCCCCTACCCTCTCTTTATAAACCAC
CCGCACATCCGCCCCTTTGACCTCCACATCGGCTCGCCGTCCGTCCTTGACATTCCCCCTCCCCCACCCC------GCCG
CTTTTCTCCGCCGTCCGTCCG---------------TCCGTCCGGTGAGATAAATACGC---------------------
-TTTGTGAGGAGTGAGAAGCATTAGCGGCAGGAGAGGCAGAGGGAGCCATCACCCG----GTACGTGTTGGGCGTAATTA
TCTCTTCCCCGAGCGGCGATTTCTGGCCTCCGTCCCCCGCCTTCGCGCGCGCCTATAATA--------TTCGGGTAGGGG
GTCGTTCCGTCCACGCTTCACGCAGAGGAGTTGGTTCCTTCTTCCTTGGGCGGAAATGGCGGAGGAGCACCACGGCGCCG
GCGCCGGCTTCTGGCTGCCGGACGAGTTCCTCGACGACGACTTCTTCTCCGACGAGAAGGCGGCGGCCGCCGCGGCGGCG
G---CGGCGGCCAGGAGCGACAGCGACGACGAGGACGGGCTCGAAGGGCTCTCGCGCCGCGTGGCCGCCCTCGACTGCGA
CGCCGGCGACCGCGCCATTCCCAAGGTTGGTTTTCGGTTGCCGGACTCTCGTCTCCTCGTCTCGTCGCTTCTTGGCCTGG
TTTGGGTTGGCATCCCTGTTTGTTGTCTTTGGAAGCATCTGATTGGTTGTTGTTTCTCTCTGTCTCTGCGTGTCTCGCGC
TCCAGGCGGAGGTGATGTCTGGGTCTCCGCAGTCCACGCTCTGCGTGCTGCAGGCCTCCGGGGAGGACAGCCCCACCGGC
GGCGGCTCGCAGGTCAGCTCGCCGCCGTCCTCGCCGCTGGAGCAGCGGCCGGCCGACCCATGGGACCTCCTGCACGAGGC
CGCCGGGCAGGTGGCCCGCCTCGGCGTGGACAGCATCCCCGTGCCTGTTGTTAACCCTCCTCCCATCCACGGCGCCGGCG
TCGCGCCGCCGGCGAGGAAGCCCTCTCCGCCGCTGCTTCCCTCCCCAAAGCCCGTCGGCCCTTACCAGTACCCGCCGAAC
AACTCGCTCGCACAGCGCCAGGCCCAAGTCGCTCGTGTGAGTTCCTCTGTCTTCTCATGCACCGTGCCGGCCAACTCTTG
CGCTTCGTTTCTCGCCGGAGTGATTATTCTCTGACGTTTTGTATGGTTTCGGGTTTCAGTTCCATCTCCTGAAGCAGCAG
CAGCTGATGAAGCACCAGCGGGAGCAGCAGCTGGCGATGGCGGCGGCCATGGCGTGGGGTTCCGCCGACGTCGGGCCGC-
--TCGGGCTGAGCCCCTCGGCCTGGCCGCCGCTGCAGAAGTCCCCGCACCACGCCCCACCGTCCGCGGCCGGCATGCGCG
CCGTGTTCCTCACCCCTCCGGGGGCCAAGCGCGAGTGCACCGGCACCGGCGTGTTCATCCCCCGGCAGGCCGGCGCGCCC
GCCGAGCCCAAGAAGAAACCAAGTGCGCCCCCTTTCTCGCCCCCACTTCCTTTGCCTGCCCCTGTCATGTCCCCCAAAAG
TATT-CTTAGCTAAAAATCCTGTGGCTCTGCTCGGCCTCAGGCTGCTCCACGGTCCTCCTCCCGGCGCGCGTCG------
-TGCAGGCGCTCAACCTCAACGTCGAAGACCTCGGCGCCCGC--------CCGTGCTACCCCGGAGCCTTCGTTCTTGAT
CACGGTGAGCAATCAATCCCTTCTGATTACGCACGCACTAGCAACGCCAATGATAATCGCATCTTTATTTTGGGTTATGA
AGATCCGTCAATGACTGACATTTCGAACTCGTT-------TCTTTGTGTCCTCACAGACGCGCTGGTGAGCCGGAGCAAC
GCGGTGCAGGCGAGCCAGAAGCGCGAGCACAACGCCAACGCCAAT---GCCGCCGCCGCGCACTCCCCGCCGCTCGCCGT
GGCGTGCGAGGTCAATCTCCCGCCGGAGTGGACGTACTGAGATGCATCGTCCGTC-------------------CGTCTC
CGTCTCCCCCCGTTTCCATGGATCACTGCCATATTTAAGTATTACTACGTATTACTATCATCATCGATGGTTAGCGCTAG
GTAGAAG-----------------TTAGCTAGAGGTAGGAGGCGGTGGCGGTAGC--------ATCAGCGTTAGGTGTTC
TTTTGTGCGTGCGTGCGTGGGTGCGTGTGGGTGATATATTGGTTATTTTGGGGGACGGTTGGTGCTG----GATGGATGG
ATGGATGGACGCCGACGAGCAAAC-----AACGGAGGAGAAACAAAATCCATGGCATGGCCTCCGTAGGTTGTTGCCGGG
AGGAATAATAAGTGTCGTCGTGGGTCCGACGAAGGAA----GAAGTTTCGGAGCTATGGCGCTGCCTGCCAAGTAGTTCT
TCTAGCTGTGTTAAGGTGATGAACTGACGAAGATTGGGAAAATATCGTCGGCGGTTCGGAAAGGCGTCGCTGTAAGATAT
AAGCAAGGAGGAAAGAAATAAGAGCTCCATGTTTCCATTTGTGCTTAAGGCTTGGAT--------------TGGATTTGC
GTTGTTGCAATTCCACTTCGGTCAGTCATGTGTACGCACGTACCATCATCATCCCTTTTGGCATCGCTCGGTTGCTTCGT
GAATAAGGAACCCCCATCTTCTATAATAAGGAAAGATATAGTGCTGTTTTTTGTTCGGTGCTTGGGC--------TTTTC
CTCCTTGTTACATTTC----TGTTTTGGAATTATTTTTGCATGTGAAATTGATCGAGTGTCC----------GTGATTAA
TTACACTTGGGAGGGAGTAGGTTCGACAGAGGTGACTTGAGGTGTTGGGTGCACTCCACTTGGG------------CGCA
AAAGTCTAATCATGTGACGTATAGTTGCTTAACAAGGGGGTGTGCTCGGTTCTTTGTTAATTGTATAGCTGATGGTTCCG
ACTGGAGTTAACGGGCCATCCGCCTCCGCAAGAATCTTCTTCCCCGGCCGGGCCGGGCCCCCCGGTATCTTGCATCTTCA
CGGCTCGTGTCGTCCTCTGACGGCG
>chr3B_1
GTGACACGAGTACAG--CAAACTCTTGGGCCCCGACGCGAGTCTCGTGACGCCCAAGCTTCTTCCTCGCGCACGCCAACG
CGGCAGTAATTTAATTACTACCACAAATAAGTATCACCAAAATGGTGGCATTTCGGTGGGGGCACGTTGTTTTCCGCGTG
AAACCACTTCTGTGAATGGTCCCTCTAATAACGCGCTGATCTGCCTA---GATCGCACGTTCGATTCGGTTCAGTGCCTT
GGTGTGAACCCCATGGAACTTTCCGCTGTTCATACGATGTTGTTTCGTCGCACATTAGCTGAACGACCACCCAACAACGC
AATGTACCAGTGGGTTGGGTCGGGTGGGTACCAAAATCACGACAT----TACGAACGCGACGCCAAAAAATCCATGAAGC
GAAACAATTATTGGGTGCCATTTCCAGAGGCAAAAGTCACA-----TGAGTTGAGGT-----TCAGCCAGAAGGGATGAC
ACGACGC---------GG-----TGAGGTGAAACTGAAACCTCTCCTCCAGACGCTGCGCAT-------GAGCCGTAAAG
CGCAGCGCGAAAAGAGCTGGTTATTTTGGCCATGTTACCATACTTAACCCTTGCCGG--TTAAAAACGCGGCCCCGAGGA
GAGGAGCACAAAAAACACGCCGGCGCCACCACCACCGCAAACGCAATCTCCATCCATGGCCCGGGGTAAAACTTTT----
--TACATTTTTGAACAATTCGCCCGGGGGTAACTCTTGCC-----------------CCTCCCCTTTCTTTATAAACCAC
CCGCACATCCATCCCTTTGACCTCCA-ATCGGCTCGCCGTCC----TTGACATTCCTCCTCCCCCACCCC------GCCG
CTTTTCTCCCCCGTCCGTCCGC--------CCGTCTTCCGTCCGGTGAGAGAGAGAGG--------GGAGATAAATACAG
-TTTGTGAGGAGTGAGAAGCATTAGTGGCAGGAGAGGCAGCCATCACCACCC-------CGTACGTGTTGGGCGTAATTA
TCTCTTCCCCGAGCGGCGATTTCTGGCCTCCGTCCCTCGCCCTCGCTCGCGCCTATAATA--------TTCGGGTAGGGG
GTCGTTCCGTCCACGCTTCACGCAGGCTG---------TTCCTTCTCGGGCTGAAATGGCGGAGGAGCACAACAGCGCGG
GCGCCGGCTTCTGGCTGCCGGACGAGTTCCTCGACGACGACTTCTTCTCCGACGAGAAGGCGGCGGCCGCCGCGGCGGCG
GCGTCGGCGGCCAGGAGCGACAGCGACGAGGAGGACGGGCTCGGCGGGCTCTCGCGCCGCGTGGCCGGCCTCGACTGCGA
CGCCGGCGACCGCGCCATTCCCAAGGTTGGTTTTCCGTTTCTGGACTCTCGTCC--------CGTCGCTTCTTGGCTTGG
TTTGGGTTGGCATCCCTGTTCCTG---TTTGGAAGCATCTGA----TTGTTGTTTCTCTC--TCTCTCCGTGTCTCGCGC
TCCAGGCGGAGGTGATGTCTGGGTCTCCGCAGTCCACGCTCTGCGTGCTGCAGGCCTCGGGGGAGGACAGCCCCACCGGC
GGCGCCTCGCAGGTCAGCTCGCCGCCGTCCTCGCCGCTGGAGCAGCAGCCGGCCGACCCATGGGACCTGCTGCACGAGGC
GGCCGGCCAGGTGGCCCGCCTGGGCGTGGACAGCGTCCCCGTGCCTGTC---AACACTCCCCCCATCCATGGCACCGGCG
TCGCGCCGCCGGCGAGGAAGACCTCTCCGCCGCTGCTTCCGTCCCCAAAGCCCGTCGGCCCTTACCAGTACCCGCCGAAC
AACTCGCTCGCCCAGCGCCAGGCCCAAGTCGCTCGTGTGAGTTCCTCTGTCATACACCGCCTTCAA----CAAGCTGTTC
CGCTTCGTTTCTCCCGG----GATTATTCTCTGACGTTTTATATGATTTCGGGTTTCAGTTTCATCTCCTGAAGCAGCAG
CAGCTGATGAAGCACCAGCGGGAGCAGCAGCTGGCCATGGCGGCGGCCATGGCGTGGGGCTCCACCGACGTCGGGCCGC-
--TCGGGCTGAGCCCCTCGGCCTGGCCGCCGCTGCAGAAGTCCCCGCACCACGCCCCACCCTCCGCGGCCGGCATGCGCG
CCGTGTTCCTCACCCCACCCGGGGCCAAGCGCGAGTGCACCGGCACCGGCGTGTTCATCCCCCGGCAGGCCGGCGCGCCC
GCCGAGCCCAAGAAGAAACCAAGTGCGCCCCCTTTCTCGCCCCCACTTCCTTTGCCTGT-CCTGTCATGTCCCCCAAAAG
TATTATTTAGCTAAAAATCCTGCGGTTCTGCTTGGCCTCAGGCTGCTCCACGGTTCTCCTCCCGGCGCGCGTCG------
-TGCAGGCGCTCAATCTCAACGTCGAGGACCTCGGCGCCCGC--------CCTTGCTACCCCGGAGCCTTCGTTCTTGAT
CACGGTAAGCAATTAATCCCTTCTCATT----ACGCACTAGCAACGCCAATGATAATCGCATCTTTATTTGGGGTTATGA
AGATCCATCAATGAC----ATGTCGAACTCCTTTTATATTTTGT------CTCGCAGACGCGCTGGTCAGCCGGAGCAAC
GCGATGCAGGCGAGCCAGAAGCGCGAGCACAACGCCAATGCCA------CCGCCGCCGCGCACTCCCCGCCGCTCGCCGT
GGCCTGCGAGGTCAATCTCCCGCAGGAGTGGACGTACTGAGACGCATCGCCCGTCTC-----------------------
-----CCCCCCGTTTCCATGGATTACTACCATATTTAATAT--------TACTATTACTATTATCGATGGTTAGCGCTAG
TTAGAAG-----------------TTAGCTAGAGGTAGGAGGCGGTGGCGGTAGCGTCGATCGATCAGCGTTAGGCGTTC
TTTTGTGCGTGCGTGCGTGCGTGT-----GGTGATATATTGGTTATTTTGGAGGACGGTTGGTGATG----GATGGGCGC
GGACG----------------AAC-----AACGGAGGAGAAACAAAATCCATGGC-----CTCCGTAGGTTGCTGCTGGG
AGGAAATAAAAGTGTCGTGGTTCCGAC-------GAA----GAAATTTCGGAGGTATGGTGCTGCCTGCTAGTTCTAGC-
TCTCGCTGTGT-AAAGGC-------GATGATGATCGGGAAAATATCATCGGCCGTTCGGAAAGGTGTCGCTGTAAGATAT
AAGT--------AAGAAATAAGAGCTCCATGTTTCCATTAG---------------T--------------TGGATTTGC
TTTGTTGCAATTCCACTTCAGTCATGTGTACCATCAT----------ATCATCCCTTTTGGCATCGTTCGGTTGCTTCAT
GAATAAGGAACCCCTCTCTTCTATAATAAGGAAAGATATAGTGGTGTTTTTTGTTCGGTGCTTGGGC--------TTTTC
CTCATTGTTGCATTT-----TGTTTCCGAATTATTTTTCCATGTGAAATTGGGCGAGTGTCATACTAGCTCAGTGATTAA
TTACACTT-----GGAGTAGGTTGAACAG-----AGGTGAGGTGGTGGGTGCAGTCCACTTGTGCTGCTACCTCCACGCA
AAAGTCTAATCATGTGACGTACAGTTGCTTAGGAAGATGGTGTACTATGTTCTTTCTTAATTGTATAGTTGATGGTTCCA
ATTGGAATTAACGGGCCATCCGCCTCCGAAAGAATCTTCTCCGGTCGC---------CCCCCCGGTATCTTGCATCTTCA
CGGCTCATGTCATGGTCTGACAGCG
>chr3D_73
------------------------------------------------------------------------CGCCAGCG
CGACAGTAATTTAATTAATTCCTACCGCAAACAATACCTGAATGATGGCATTTCGGTGGGGGCACGCTGGTTTCCGCGTG
AAGCCACTTCCGTGAATGGTCCCTCTAATAACGCGCTGATCTGCCTAGTAGATCGCATGTTCGACTCGGTTCAGTGCCTT
GGTGTGAACCCCATGGAACTTTCTGCTGTTCATACGTTGTTGTTTCGTCGCACATTAGCTGAACGGCCATCCAACAATGC
GCCTGCACAGCGGGTTGGGTCGGGTGAGTGCCAAAATCACGACATTGAGTACGAACGCGACGCCAAAAAAACCATGAAGC
AGAACAATTATTGGGTGCCATGTCCAGAGGCAAAAGTCACATGAGCTGAGTTGAGGT-----TCAGCCAGAAGGGATGAC
ACGACGC---------GGCGAGGTGAGGTGAAACTGAAACCTCTCCTCCAGACGTTGCGCAT-------GAGCCGTA---
--------GAAAAGAGCTGGTTAATTTAGCCATGTTACCATACTTAACCCCGCCGGTTATTAGAAACGCGGCCCCGTGGA
G--GAGCACAAAAAACACGCCGGCGCCACCACCACCGCAAACGCAATGGT-------------------ATTAACCTTTT
ACTACATTTTTGAACAATTCGGCCGGGGGTAACTTTTGCCCCTCTCTCCTCCCCTCCCCTCCCCTTTCTTTATAAACCAC
CCGCACATCCACCCCTTCGACCTCCACATCGGCTCGCCGTCC----TTGACATTCCTCCTCCCCCACCCCACCCCCGCCG
CTTTTCTCCGCCGTCCGTCCGTCCGTCCGTCCGTCTTCCGTCCGGTGAGAGAGAGAGAGAGGGAGAGGAGATAAATACAC
TTTTGTGGGGAGTGAGAAGCATTAGCGGCAG---AGGGAGCCATCACCCTTCGCCACCGCGTACGTGTTGGGCGTAATTA
TATCTTCCCCGAGCGGCGATTTCTGGCCTCCGTCCCTCGCCCTCGCTCGCGCCTATAATATTCGTTCGTTCGGGTAGGGG
GTCGTTCCGTCCACGCTTCACGCAGAGGAGTTGGTTCCTT-CTTCCTTGGCGGAAATGGCGGAGGAGCACCACGGCGCCG
GCGCCGGCTTCTGGCTGCCGGACGAGTTCCTCGACGACGACTTCTTCTCCGACGAGAAGGCGGCGGCCGCGGCGGCGGCG
TCGGCGGCGGCCAGGAGCGACAGCGACGACGAGGAGGGGCTCGGCGGGCTCTCGCGCCGCGTGGCCGGCCTCGACTGCGG
CGCCGGCGACCGCGCCATTCCCAAGGTTGGTTTTCGGTTACCTGACT--------CTCGTCTCGTCGCTTCTTGGTTTGG
TCTGGGTTGGCATCCCTGTTTGTTGCCTTTGGAAGCATCTGA----TTGTTGTTTCTCCCTGTCTCTCCGTGTCTCGCGC
TCCAGGCGGAGGTGATGTCTGGGTCTCCGCAGTCCACGCTCTGCGTGCTGCAGGCCTCCGGGGAGGACAGCCCCACCGGC
GGCGCCTCGCAGGTCAGCTCGCCGCCGTCCTCGCCGCTGGAGCAGCAGCCGGCCGACCCTTGGGACCTGCTGCACGAGGC
GGCCGGCCAGGTGGCCCGCCTCGGCGTGGACAGCATCCCCGTGCCTGTC---AACCCTCCTCCCATCCATGGCGCCGGCG
TCGCGCCGCCGGCGAGGAAGCCCTCTCCGCCGCTGCTTCCGTCCCCAAAGCCCGTCGGCCATTACCAGTACCCGCCGAAC
AACTCGCTCGCCCAGCGCCAGGCGCAAGTCGCCCGTGTGAGTTCCTCTGTCATACACCGCCTTGCACAAT----CTGTTC
CGCTTCGTCTCTCCGGG----GATTATTCTCTGACGTTCTGTATGATTTGTGGTTTCAGTTCCATCTCCTGAAGCAGCAG
CAGCTGATGAAGCACCAGAGGGAGCAGCAGCTGGCCATGGCGGCGGCCATGGCGTGGGGCTCCGCCGACGTCGGGCCGC-
--TGGGGCTGAGCCCCTCGGCCTGGCCGCCGCTGCAGAAGTCCCCGCACCACGCCCCACCATCCGCGGCCGGCATGCGCG
CCGTTTTCCTGACCCCACCCGGAGCCAAGCGCGAGTGCACCGGCACCGGCGTGTTCATCCCCCGGCAGGCCGGCGCGCCC
GCCGAGCCCAAGAAGAAACCAAGTGCGCATCCTTTTCCGCCCCCACTTCCGT----TGC-CCTGCCCTGTCCCCCAAAAG
TATT-TTTAGCTAAAAGTCCTGTGGTTCTGCTTGGCCTCAGGCTGCTCCACGGTTCTCCTCCCGGCGCGCGTCG------
-TGCAGGCGCTCAACCTCAACGTCGAGGACCTCGGCGCCCGC--------CCGTGCTACCCCGGAGCCTTCGTTCTTGAT
CACGGTAAGCAATCAACCCCTTCTCATTACGCACGTACTGGCAACGGCAATGATAATCGCATCTTTATTCGGGGTTATGA
AGATCCATCAATGAC----ATTTCGAACTGCTT-------CTGT------CTCGCAGACGCGCTGGTGAGCCGGAGCAAC
GCGATGCAGGCGAGCCAGAAGCGAGAGCACAACGCCAACGCCAATGCCGCCGCCGCCGCGCACTCCCCGTCCCTCGCCGT
GGCGTGCGAGGTCAATCTCCCGCCGGAGTGGACGTACTGAGATGCATCGTCCGTC-------------------CG--TC
CGTCTCCCCCCGTTTCCATGGATTGCTGCCATATTTAAGTATTACTCA----TATTACCATTATCGATGGTTAGCGCTAG
GTAGAAG-----------------TTAGCTAGAGGTAGGAGGCGGTGGCGGTAGC--------ATCAGCGTTAGGTGTTC
TTTTGTGCGTGCGT--------GT-----GGTGATATATTGGTTATTTTGGAGGACGGTTGGTGATGGATGGATGGGCGC
CGACG----------------AACGAACAAACGGAGGAGAAACAAAATCCATGGC-----CTCCGTAGGTTGTTGCCGGG
AGGAATAATAAGTGTCGTGGCTCCGAC-------GAAGGAGGAAATTTCGGAGGTATGGTGCTGCCCGCTCAGTAGTTCT
TCTAGCTGTGT-AAGGTGATGAACTGACGATGATTGGGAAAATATCGTCGGCGGTTTGGAAAGGCGTCGCTGTAAGATAT
AAGTAAGGAAGAAAGAAATAAGAGCTCCATGTTTCCATTAG---------------TGCCTACTGCTGCCTTGGGTTTGC
TTTGTTGCAATTCCACTTCGGTCATGTGTACTATCAT----------GTCATCCCTTTTGGCATCGTTCGGTTGCTTCAT
GAATAAGGAACCCCTCTCTTCTATAATAAGGAAAGATATAGTGGTGTTTTTTTTTCGGTGCTTCGGCCGAAAGCCTTTTC
TTCCTCCTTGCATTTTGTTTTGTTTTTGAAATATTTTTGCATGTGAAATTGGACTAGTGTCATC---GCTCAGTGATTAA
CTAGACTT-----GGAGTAGGTTGAACAGGGGCGAGGTGAGGTGGTGGGTGTACTCCACTTGCGCA------------CA
AAAGTCTAATCATGTGACGTACGGTTGCTTAACACGATGGTGTAGTCTGTTCTTTCTTAATTGTATAGCTGATGGTTCCG
ATTGGAATTAACGGGCCATCCGCCTCC-AAAGAATCTTCTCCCCCGGTCGGGCCGGGCCCCCCGGTATCTTGCATCTTCA
CGGCTCGTGTCATGGTCTGACAGCG
>chr6D_1883
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------TCCACCGATGTCGGGCCGCC
GCTCGGGCTGAACCCCTCGGCCTGGCCGCCACTGTAGAAGTCCTCACACCATGCT---CCATCTGCGGCCGACATGCGCG
TCGTGTTCATCACCCTTCCTGGAGCCCAGCGCGAGTGCACTGGCACCGGCGTGTTTACCCCTGTGCGCCGAGCCG-----
-----GCCCAAGAAGAAACCAGGTGCGTCCCCTTGTCGGCCCCTCCTTCTTTTGCTTG------------CCCCCGAAAG
TAAT-TTTAGTTAAAATTC--GTGGTTCTGCTTGACCTCAGGCTCCTCCACGGTTCTTCTCCTGTCGCGCGTCGTCCGTT
GTGCAGGATTTGAATCTCAATGTCGAGGACCTTGGTGCCCGTCCTTCAGTCCTTGCTATCCCGGGGCCTTCCTTCTTGAT
CATGGTACTGAGTTCA----TTCTCATT----ACGCACTAGCAATGTCAATGAG------ACCTTTCTTTGTGGTTATGA
ATAGCAAT-----------ATTTCGAATTCCTT-------TTGT------CTCACAGACGCACTGGTCAGACGGAGCAAC
GCGATGTAGGCCAGCTAGAAGTGCGAGCACTATGT------CAAT---GCCACCGCTGCGCATTCCAGGCCACTCGCCGT
GGCCTGAAAGGTCAATCTCCCGCACGAGTGGACGTATTGAGATGCATATTGCTCTCTTCTCTGCGACCAAGCATCG--AC
CGTCTCCCCTGGTTTCCATGGATCACTATA----------------------------TTTAATTGATCGTTAGCACTAG
GTAGATCTTAGCTAGAAGTATACCTTAGCTAGAAGTAGGAGGCGGTGGCAGTAGC--------ATCAGCGTTAGGTGTTC
TTTTGTGTGTG---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
>SNPs
------S---SSS--SS-------S----S---------S------------S-----------S---------------
---------------S--S-------------------S-----------------------------------------
----------------------SSS---------------------------------------------S-S-------
---------------S--------------------------------------SSSSSSSSSSS---------------
--------------------------------------------------S--------------S-S---SSS------
-------------------------------------------------------S-SSSSS-------------S----
-SSSSSSSSSSSSSSS------------------------------S---------------SSSSSSS-----------
--------------------------------S-----------------S-----------------------------
----S------S------------------------------------------------------------S-------
------S----------S--------SSSSSSS-SS------------------S-----S----S--------------
----------S-------------------------------SSSS----------S-----------------------
--------------------------------------------------S-S-S-S-S---------------------
----------------------------------------SSSSSS-----SS--S------------------------
------------------------------------S----S----S---------------------------------
-----------------------------------------S-S------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------SS----------------------S------------
---------------------------------------S-------------SS---------------------S---
-------------------------S----------------SSSS---------------------S------------
--------------------------------------------------------------------------------
----S-----------------------------------------S---------------------S-----------
S-----S-----------------------------------------SSSS-----------------S----------
----------------------------------------S---------------------------------------
-----------S---------------------------------------S-SSSSS--SSS-SS-SSS-S-S--S--S
-------------S-S-SSSS------------------------S----------------------------------
-----------------------------------S-----------------------S--------------------
------------------------------------------------------------S-------------------
-------------------S------------------------------------------------------------
-----------------------------------------------------------S--------------------
-----S-------------------S------S---------------------S-------------------------
--------------------------S-----------------------------------------------------
------S-----------------S---------------------------------------------S---------
------S--------SSSS-----------S----------SS-SSSSSS------------------------------
---S----------------------------------------------------------------------------
----------------------------------------------------------------------------SS--
----------------------------------------------SSS--S--S--S---S------------------
--------------------------------------------------------------------------------
-------------------S---SSSSSS----------------------S------------S-----------SS-S
SSSSSSSSSSSSSSSSSSSSS----------------------------------SSSSS--------------------
------------------S--SSSSS-SSSSSSS----------S--------S-----S---------S----------
-----------S------------------S-------------------------------------------------
---S-----S-----------------------------S-SSSSSSSSSSSSSSS------------------------
S-----------------------SSSS-SSSSS-SSSSSSSSSSSS-------------------S-----------S-
--------------SS---------------------------S------------------------------------
---------S-----S----------S------------------------SS--------S------------------
--------SSSSS----------SS----S--S--SS-------S-----------------S-----------------
---------------------S--------------SS-----S---S-------S------------------------
-S----S---------------------S-----------S---------------------------------------
-----------S-SS------S---
>forward_65
---------------------------------------------GTGACGCACAAGCTTCTTCG---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
>reverse_1732
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------TAACCCTCCTCCCATCCACG---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
>forward_296
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------ATGTTGTTTCGTCGCACACC------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
>reverse_2300
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------CCCTGTCATGTCCCCCAAAA-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
>forward_1934
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------CTCTTG
CGCTTCGTTTCTCG------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
>reverse_3142
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------GGGTCCGACGAAGGAAGAAG---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
