>input_sequence_48478
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------ATTATTTGTGCTCTGTATG
GTTGAGGAGAGAGGAAGAATTCATCACGAATTGCAAAGGTGAACATTTGTTGCCACT------------------TTTCT
TTGCCGAACCCTGAATAAA---TCGCTCCATCGACCGTCACTCAGGTCAGGTCACGCACGCTCTCTCCAAGTCTCCATTC
CTGTCCTGTGTTGCCCGTCTCGTCTCCCTTGCACGA--------------------------------------------
---TCTGACACGAAATTCTCGTCTCTGCCAAACACAACCATACATACGTTTCCATGGCGATCAGCAGCAGAGCAGCAGCC
TGTGCCGCGCTCGCCTTCCCGAGCACCGCCGCCGCCGCCGCGCCACCCTCGAGCGTCTCCGTGAACCGGAGAGCTCGGCC
GAGGAAGGCGTTGGCAGCCGTGGCGCGCGCGACCAGCGCTGGCGGCGCGGTGCTGGACCCGCCGGCCTTCGACCAGTCCC
AGCTCGACACCCTCCCCCCAGCACAAGAAGGTGCGCATTCAG---CAACGCCGAACCAAAACCAAAACCAAAACCAAATT
GATATTGATATTGAGCTCTCCATTTCTGATGCTCGGTGCGCTGATATTGATAATGGCGTCGTGTCA--TTGCATGCAGGA
GGAGACACGGGGAGGCTCAAGGACCGCAAGGGCACCGGCAGCGGCGACAGCTACAAGGTGCTGCTCCTGGACGACCCGCG
CCACACCGAGAAGCACGGTACGTATCCTTTTCTTCTTCTTCTCCTGCAATGTTTTCTGATGTCTCGATGGACTCATGGTT
GGCCGCCGTCTTTACCACC------------------------GTGCGTGTGCGTGTGCTGTGATGTGCAGTGGAGACGG
CGCTGCCGCAGGTGGTGCCGTCCGTGACCCCCGAGGCGGCGCGGCAGCTCTTCCACGAGTCCCGCCAGAAAGGCGCCGCG
CTCGTCATCGTCGCCGTCAAGGTACGTACATACACGCATGCCCGCACTGCTTTCATTTAGCTCATTCAGTCAATC-AATA
GCTAGCGCCCCGTTT-----------------TAAATTTCTGTTGAGCCAACACCAACCTACTACAGTCCACTACAGCTC
CAAGACTTGGAGGACACTCCCTAACTT-TTCCCTTTTCTCCTACTGTACATGTTATGAGTAGGCCATGGCTAGAATAGAT
ATACTACTAGTGAC----TTTTTGGAGTATTTTAATTTAAGAGATACTGCTCTCATGATGGCTGAACAGGAGCATGCCGA
GTTCTACGCGCAGATGATGGTCCGCCACGGGCTCCGATCCGCCATCGAGCCCGAATCCGACATGGCAGCTTAACCTACCG
GTGTTTTCCAGGGACGGTGCACCCGG--CCATTTTCGGCGCTGGGTTTTGGAGGGCCGACGCATT-----TCATCCAGCA
GTACCGGAGGGAATTCCTTTTTTCTCATGCGACCAGCTAGCAGCAGCAGCAGCAGTGTCAGCGTGCATTGCGCAACCTCT
CAGAATGTAATCATGTTTTTTTATTTGCAAATGAGAATGTAATCATCATGTACTAACAGTAAGTGAAACCAACGAGATTC
GGATGAGTGGTTCTGCGAACAAACCGATTCCATTGGTTTTGCAGCGCATTTTTCTTTCTAC-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>chr3A_1_TraesCS3A01G352300
CTGTTAACTATCAAGTGGTCTGATGTCGTTTGTTCTGGTCAAGTGATTGCGCATATCTGGAGTATATAGGAATTTTTTGG
TTTTTGTTCATGAACTCGTTGAGCCGTTTGAGA-----CTTTCGGCTCAAGAATTTCATGGGATATA--GAGGATAAAAA
GCTGGTATACGGAAATCCATTTTTGTACTT----TATATTGTAAAAAAATGGTGCATCGAACGCTGTGTTCTTCGTGCCC
ACAG--ACAGTATATGGAAATATATATGACACTCTAGTCGCCCAGTTTTCTGCTGTTACTACGTTGTTGGATATCATCCA
CTAATATGTTTTCTAAATGCGTGTTTTTTTTGT-GGTCGCTTGTACTCCTAGTTGGTATTCTTTCATCTTTTCTTTGAGT
CTTACTTTCACCTTCAGTCGAATCTATCCGATTGCTTAGGGTCTCTTTGATTCAAAGAATTTTCATAGGATGTTTGAAGG
ATTAGAATCCGTAGGAATTTTTCCTACGTTGATCGTTTGATTCGTAGGATTGAATCCTGTAGGATTATTTCTTTTGCAAG
AATTCTAACATCCACTCCAACCTCTTGAAAGAAATCCTTTATTTTTTTCGTGACACAATCAAACAAACTTAAATCCTATA
GGGATCACAATCAAACAAACTTAAATCCTATAGGATCCAATGGACATGTCATTCCATTTCTGCGTTTTCCCTATTTCTGT
GTTTTTGCGATCTTATGAATCAAAGAGGCCCTTAAGACGCACACG-----------------------------------
--------------------------------------TGCAATTTTCTTGTGGTCGGTTCTGGATCCTTACCGGCGTCT
GGGTTTGTATTGTTTCTGGAACGTTCCAGCAAGACCCGTTTGCTGGCGATGGCCAGAAGACAAGA--TGTGGTCGTTGCC
GGCCAACTTAGATGTGTGGCGAGATCTGGGCCGTCAGAACTCTGGATTGTTCCAGATGCGCGTTGT-AATGCGCACAGTT
GTAGCGGTACCTCTTCG-----------TTTCGATTAAGACAGCGCTGTGTTTACCGCTGGATTATTTGTGCTCTGTATG
GTTGAGGAGAGAGGAAGAATTCATCACGAATTGCAAAGGTGAACATTTGTTGCCACT------------------TTTCT
TTGCCGAACCCTGAATAAA---TCGCTCCATCGACCGTCACTCAGGTCAGGTCACGCACGCTCTCTCCAAGTCTCCATTC
CTGTCCTGTGTTGCCCGTCTCGTCTCCCTTGCACGA--------------------------------------------
---TCTGACACGAAATTCTCGTCTCTGCCAAACACAACCATACATACGTTTCCATGGCGATCAGCAGCAGAGCAGCAGCC
TGTGCCGCGCTCGCCTTCCCGAGCACCGCCGCCGCCGCCGCGCCACCCTCGAGCGTCTCCGTGAACCGGAGAGCTCGGCC
GAGGAAGGCGTTGGCAGCCGTGGCGCGCGCGACCAGCGCTGGCGGCGCGGTGCTGGACCCGCCGGCCTTCGACCAGTCCC
AGCTCGACACCCTCCCCCCAGCACAAGAAGGTGCGCATTCAG---CAACGCCGAACCAAAACCAAAACCAAAACCAAATT
GATATTGATATTGAGCTCTCCATTTCTGATGCTCGGTGCGCTGATATTGATAATGGCGTCGTGTCA--TTGCATGCAGGA
GGAGACACGGGGAGGCTCAAGGACCGCAAGGGCACCGGCAGCGGCGACAGCTACAAGGTGCTGCTCCTGGACGACCCGCG
CCACACCGAGAAGCACGGTACGTATCCTTTTCTTCTTCTTCTCCTGCAATGTTTTCTGATGTCTCGATGGACTCATGGTT
GGCCGCCGTCTTTACCACC------------------------GTGCGTGTGCGTGTGCTGTGATGTGCAGTGGAGACGG
CGCTGCCGCAGGTGGTGCCGTCCGTGACCCCCGAGGCGGCGCGGCAGCTCTTCCACGAGTCCCGCCAGAAAGGCGCCGCG
CTCGTCATCGTCGCCGTCAAGGTACGTACATACACGCATGCCCGCACTGCTTTCATTTAGCTCATTCAGTCAATC-AATA
GCTAGCGCCCCGTTT-----------------TAAATTTCTGTTGAGCCAACACCAACCTACTACAGTCCACTACAGCTC
CAAGACTTGGAGGACACTCCCTAACTT-TTCCCTTTTCTCCTACTGTACATGTTATGAGTAGGCCATGGCTAGAATAGAT
ATACTACTAGTGAC----TTTTTGGAGTATTTTAATTTAAGAGATACTGCTCTCATGATGGCTGAACAGGAGCATGCCGA
GTTCTACGCGCAGATGATGGTCCGCCACGGGCTCCGATCCGCCATCGAGCCCGAATCCGACATGGCAGCTTAACCTACCG
GTGTTTTCCAGGGACGGTGCACCCGG--CCATTTTCGGCGCTGGGTTTTGGAGGGCCGACGCATT-----TCATCCAGCA
GTACCGGAGGGAATTCCTTTTTTCTCATGCGACCAGCTAGCAGCAGCAGCAGCAGTGTCAGCGTGCATTGCGCAACCTCT
CAGAATGTAATCATGTTTTTTTATTTGCAAATGAGAATGTAATCATCATGTACTAACAGTAAGTGAAACCAACGAGATTC
GGATGAGTGGTTCTGCGAACAAACCGATTCCATTGGTTTTGCAGCGCATTTTTCTTTCTACTCCCTTCGTTCCTAAATAT
TTATCTTTCTAAAGATTTCAACAAGTGACAGAGCAAAATGAATGAATCTACATTATAAAATATGTCTATATACATCTGTA
TGTGTTAGTTCATTAGGAACGGAGGAAGTAGATAGTAGTAGTAGTACGTCATTTCGGGTCTGCGAGCCAGAGCGTCGAAA
TGGTTCAGCCAGCGTACCGCGCCACACACCCCGACGTCGTAGCATGCATTTTTTTT------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------CT
GGATATCTGGCATGTCGACACGTCGGGAGTCGGGACCAGGACCAGAGGTTCGCATAGGGCCTGCGCGCACG----CAGGC
GGCATCATTCCGCTCCGTAGCGACACGCATACGCACGGCAAGCCCCACCACACGAGTTCATTCGTTCGTTCGG-------
--------------GCAGAGCTCAACGTGAGATAC---GTACTACTC---------AAAAAAAGGGTTCCAATTTCCAAA
TGGAAGTGCATTCTGTATGCGTGTAA---GAA----CCAAACATGGCGCTTTCGTGTTCCCCGAAGCAATC---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------TCTCTCTG
CTTTCTTTTCTTTCCCCGTGCGTGC--------------------------A---TGTTATTCTTTCCGGGAAGACTGCC
CTCTGCCGCCGGCAGT--------CTAGTAGTGCCACCGCCAGCCATCATCACAGCT-CTGCAAAGCCCTTTTGCCGCTA
ATCACAGCG----------GCAGGTTCTTAATCCCATTCTCCTTTCTAGCA----------------------GCAGCTC
AGCTCCTTCGGGTCGTCAACTGGCCAGTTTACCCA--CCAGCGGGCCTCAGGCTCGCCATGTCCCGTGTATGCTGAGCGC
ATCGGGAACCATGGCTAGCCAGCACAGGTCACCC---GCGGTGGTTCGGCCGCCCCTTTCGTCCACAGCGCGCGCGAGCA
GGACGTACGGGACGCCGCTAGCTGCCGCGGCGCACAGCGGGCAGATGCGCGCCGCGAATTATTATTTTGGCGCTGCCCCG
CTAGCTCCCGCCACTGCCAGTCTAGTCT-CGCCACCACCCCACGTTTCCCTCCCAGGCTCCAGCCCCATGTGCCCCATCG
CAGC
>chr3D_1
CTGTTAACTATCAAGTGGTCTGATGTCGTTTGTTCTGGTCAAGTGATTGCGCATATCTGGAGTATATAGGAACTTTTGA-
TTTTTGTTCATGA-CTTGCTGAGCCGGTGTGACATCATCTTTCGGCTCAAGAATTTCATGGG--ATA--GAGGATAAAAA
GCTGGTATACGGAAATGCATTTTTGTACTT----TATATTGTAGAT---TGGTGAACCGAACATTGTGTTCTTCGTGTCC
ACAGATACAGTATATGGAAATATATATGACACTCTCGTCGCCC-GTTTTCTGCTGTTACTACGTTGTTGGATATCATACA
CTAATATGTTCTCTAAATGCGTGTTTTTTTTGTTGGTCGCTTGTAGTTGGAATTCT------------------------
-TTACTTTCACCTTGAGTCAAATGTATCCGATTGCTTA------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------AGATGCACAAG-----------------------------------
--------------------------------------TGCAATTTTCTCGTGGTTGTTTCTGGATCCTTACCGGCGTCT
GGGTTTGTATTGTTTCTGGAACGTTCCAGCAAGGCCCGTTTGCTGTCGATGGCCAGAAGGCGAGA--TGTGGTCGTTGCC
GGCCAGTGT-GATATGTGGCGAGATCTGGGCCGTTAGAACTCTGGATTGTTCCAGATGCGCGTTCT-AATTCGTACAGTT
GTAGCAGTACTTGTTCGTCTCTTTCTGCTTTCGATTAAGACAGCGCAGTGTTTACCGCTGGATTATGTGTGCTCTGTATG
GTTCAGGAGAGAGGAAGAATTCATCACGAATAGCAAAGGTAAACACGGACGCGAAATTCCTGACATCTTTGGCACTTTCT
TTGCCGAACCTGAATAAATCGCTCGCTCCATCGACTGTCACTCAGGTCACGCGCGCCCTGTCTGTGTTTCT---------
---------------CGTCTCGTCTCCCTTGCGCGA--------------------------------------------
---TCTGACACGAAATTCTCGTCGAACG------CAACCATACATCCGCTTCCATGGCGATCAGCAGCAGAGCTGCAGCT
TGTACCGCACTCGGTTTCCCGAGCACCACCGCCGCCGCCCCG---CCCTCGAGCGTCTCCGTGAACCGGAGAGCTCAGCC
GAGGAAGGCGGTGGCAGCCGTGGCCCGCGCGACCAGCGCTGGCGGCGCGGTGCTGGACCCGCCGGCCTTCGACCAGTCCC
AGCTCGACACCCTTCCCCCAGCACAAGAAGGTGCGCATTCAGCAACAACGCCGAACCAAAACCAAATCATCGTT------
----------TCGAGCTCTCCATTCCTGATGCTCGGTGCGCTGATACTGACATTGCG---TTGTGCCGTTGCATGCAGGA
GGAGACACGGGGAGGCTCAAGGACCGCAAGGGCACCGGCAGCGGCGACAGCTACAAGGTGCTGCTCCTAGACGACCCGCG
CCACACCGAGAAGCACGGTATGCA-----TTCTCCTTCTTCTCCTCCTCGATCGACCCTGGCAGTGGTGGTG--------
----------------------CGTTTTTCCTTACTGC--------CGTGTGTGTGTGCTGTG-----CAGTGGAGACGG
CGTTGCCGCAGGTGGTGCCGTCGGTGACGGCCGAGGCGGCGCGGCAGCTCTTCCACGAGTCCCGCCAGAAAGGCGCCGCG
CTGGTCATCGTCGCCGTCAAGGTACATACC-ACACGCATGCCCGCCCGCCCCCCCTTTACTTACTTCAGTCCGTCGAATA
GCTAGCGCGCGGCGTGCACACCTCCGTATTAATAAATCTCAGTTGAGCCAGCACGTCTCGATCTGCTG------CAGCTC
CAAGACTTGGAGGACACTCTC-AACTTGTTTCCCTTTCTCCT--TATATATTATGGGGGTAGGGTATGGCTTAGATATAG
TGG-TACTAGTAGC----TTTTTGGGCTAGTTTAATTTAAGAGATT---CTGTCATGATGGCTGAACAGGAGCATGCCGA
GTTCTACGCGCAGATGATGGTTCGCCACGGGCTACGATCTGCCATCGAGCCCGAGTCCGACATGGCATCTTAACTTAACC
GTGTTTTCAGAGACAAGGGAGCACCTGCCCATCCTCGGCGCTGGGTTTTGGAGGACCGACGCATCTCTTCTCATCCCATA
GGACCGGAGGCAAATTCAGCTAGTGCTAGTGTGTAAGCTCTGAGCATTT-------------------------------
----ATGTAATCACATGTAACATCA--------------------------------AGTAAGTGAAACCAACGAGATTC
AGACAGAGAAGCTCCG--------------------------AGCACATTTC-CCATGGCG-------------------
--------------------------------------------------------------------------------
---------------------------------------------------TTCCACGTCTGCCAGCCAGCGCGTCGAAA
TGCATGGCTCTGTCCAGTGAT-------GCCACACATCCCAGCATGCGATTTTCTGGGTGTCTG----------------
-------------------------GTAACATCAAGTAGGTGAAGCCAAAGAGATTCAGAGAAGTGATCGTGCGCGCAAA
CTCCTGCCGCTGGTTTTGTGGCACATTTTGTATGGCATTCCGGATGTGCCAGTCACTCATACGTACATTCTTGGGTGCCT
GGTAATCTGGTATGTCGACACGTCGG---TTGGGACTAGGACCAGAGCTTTGCATAGGGCCTGCACGCACGCACGTAGGC
GACATCATTCCGTTCCGTAGCGACACACGGCAAGC-------CCCCACCACACGAGTTCGTTCGTTCGCTGGGCGCA---
--------------GCAGAGCTCAACGTGAGATACTATGAACTACTC---------AAAAAAGGG------------CCA
TGGAAGTGTATAGAGAAATGCGTGCTAGAACCGAGCCCAAACGTGCTGCTTTCGGGTTCCCCTAAGCGGCAAATTTGACC
CGTGGACGAAATCAGATCACAGAATAAACTGCCCGTGAAACTATTTCACGCGGCTGACCTTTTTATGACGCCTGACACGA
AGGCGCCACACTAGCCACACTATACTGTGCAACGCCTCACAGATAGGCGCTACACGCCTGGCCAGCGTTGCAACCCAGAC
TGCCTAAAAATTGCTAAGTCATTGTGCAGAGCCTAAGAGCTAGGCGTTGCACTGTATAGTGTGGCGCCTAGCTCTCAGGC
GCTGCACTAGTGGTTGCACTACAAAATGAAGCAACCACTAGTGCAACGCCTAGAAGCTAGGCGCTACACTGTATAGAGTG
ACGCCTAGCTCTCAAGCGCTGCACACTGACTTAGTAATTTTCGGATCACACGGGTGCGACGCTGGCCAGGCGTGTAGCGC
CTATCTGTGAGGCCTTGCACAGTGTAGTGTGGCGCCTTCGTGTCGGACGTCACACAAAAAAGTCAGCCGCGTGAAATAGT
TTCACGGGCAGTTCATTCTGTGATTTGATTTCGTCCATAGGTCAAACTTATCAATTTTGCCCCTCGAAGCATTCTCTCTG
CTTTCTTTCCTTTCCCCGTGCGTGCTGTGCTGCAATCATGCGGCAGTCAGCATGTTGTTATTCTTTCCGGGAAGACTGCC
CTCTGCCGCCGGCAGTAGTAGTAGT--GTAGTACCACCGCTCGCCATCATCACAGCTCCTGCAAAGCCCTTTTGCCGCTA
ATCACAGCTGCGACAGGCAGCAGATTCTTAATCCCATCCCCCTTTCTAGCAGCAGGCGGCAATGTTCGCAGCTGCAGCTC
AGCTCCTCCGGGTCGTCA----GCCGGTTTACCCACTCCAGCGC---------------------------G--------
-TCGGGAACCAGGGGTGAGCAACACAGGTCACTCCCGGCGGTGGTTCGGCCGCCCCTTTCGTCCACAGCACGCGCGAGCA
GG----ACGGGACGCCGCTAGCTGCCGCGGC----------CAGATGCGCGCCGCGAATTATTATTTTGGCGCTGCCCCG
CAACCTCCCGCCACTGCCAGTCTACTCTCCGCCACCACCCCACGTTTCCCTCC---------------------------
----
>chr3B_1
CTGCTAACTATCAGGTGGTCTGAGGCCGTTTGTTCTGGTCAAGTGATTGCGCGTGTCTGGAGTATATAGGAACTTTTTGG
TTTTTGGTCATGA-CTTGTTGAGCCGTTGCGACATCATGTTTCGGTTCAAGAGTTTCAGGGG--ATATAGAGGATAAAAA
GCTGGTATACGGAAATGCATTTTTGTACTTCTATTATATTGTAAAT---TGTTGA-------------------------
-------------ATGGAAATATATTTCGTCCCTTGCCCT-----TTTTCTGCTGCTACAAGGTTGTTGAATATCATCCA
CTAGTATGAT-------------TTTTTTTTGT-GGTTGCTTGTGGGTATA----GTATTCTTTCATCTTTTCTCTGAAT
----------------------------------CTTAGGGCCTCTTTGATTCATAGGATTGGGAATAGGAAAAATATAG
GATTGGGATGTCATGCTCATCTTC-----------------------------ATCCTATAGGATTCTTTCAAAGAGTTT
TGAGTGAATGGAAAAATTCTTGTAGGA-----------------------------------------------------
--------------------------------------------------------------------------------
-----TTCAATCCTTTGAATCAAACAGCAACATAGGAAAGAATCCTAAGGATTATAATCCTTAAAAAAAATACTATGTAA
ATCCTTTGAATCAAAGGATATTTCTCAAGAAACACAAATGCAATTTGCTCATGGTTGGTTCTGGATCCTTACCGGCGTTT
-GGTTTCTATCGCTTCTGGAACGCTCCAGCAAGACCCGTTCGCT-------GCCAGAAAACAAGATGTGTGGTCTTTGCC
AGCCAATGC-GGTGTGTGGCGACCTTGGG--------------GGATTGTTCCAGATGCGCGTTTGCAATTCGTACAGTT
GTAGCACCGCTTGTCCCTTTCCGCTCCTTTTGCCTAGGACTCGTAGCTAAAACTGCATCTCGCTATTTGTTATCTGTATG
GCTTAGGAGAGAGGAAGAATTCACCACGAATAGCAAACCGCAA-----ACACGAAATTCCTGGCAT-TTTGGCACTTTCT
TTGCTGAACCCTGAATAAA---TCCTAGCACCGTC-GTTACTCACGGCACACGCTCCCCATCCTTTG-------------
------------------CTCGTCTCCCTTGCACGAAGCCCCGATCTAACGCACGCGGCTGCGTGGTGAACACAAAGCCC
CGGTCTGACACGAAAATCTCGTCGCCGCAG--------CATACTGACGTCCCCATGGCGATCAGCAGCAGAGCAGCAGCC
TGTGCCGCGCTCACCTTCCCGAGCACCGCCGCCGCCG---CGCCACCCTCGAGCGTCTCCGTGAACCCGAGAGCTCAGCC
AAGGAAGGCGATGGCAGCCGTGGCGCGCGCGACCAGGGCTGGCGGCGCGGTGCTGGACCCGCCGGCCTTCGACCAGTCCC
AGCTCGACACCCTTCCCCCAGCACAAGAAGGTGCGCATTCAGCAACAACGCCGAACCAAAACCAAATCATCGTT------
----------TTGAGCTCTCCATTTCTGATGCTCGGTGCGCCGATATTGCTATATTGCGTTTGTGTCGTTGCATGCAGGA
GGAGACACGGGGAGGCTCAAGGACCGGAAGGGCACCGGCAGCGGCGACAGCTACAAGGTGCTGCTCCTAGACGACCCGCG
CCACACCGAGAAGCACGGTAGGTATC-TTATTTTTTTCTCCTCCTTCTCGATCGATCCCGGTAGTTGACTAGTGGTGGAA
TGAATGGACCGATGAAGCAATCCGTCTTTCCTTACCACCGGGTGTGTCTGTGCGTGTGCTGTT-----CAGTGGAGACGG
CGTTGCCGCAGGTGGTGCCGTCCGTGACGGCCGAGGCGGCGCGGCAGCTCTTCCACGAGTCCCGGCAGAAAGGCGCCGCG
ATGGTCATCGTCGCCGTCAAGGTAC-TACC-ACACGCATGCCCGCACGCCTCCGTTTTA---------------------
----------------------------------AATTTCAGTTGAG--------------------------------C
CAAGACTTGGAGGACACTCTTTAACTTGTTTCCCTTTCTCCT--TATATATTATGGGGGTAGGGTATGGCTTAGATATAG
TGG-TGGTAGTACTAGCTTTTTGGGGATATTTTAATTTAAGAGATA---CTCTCATGATGGCTGAACAGGAGCATGCCGA
GTTCTACGCGCAGATGATGGTTCGCCACGGGCTCCGATCTGCCATCGAGCCCGAATCCGACATGGCAGCTTAACTTAACC
GTGTTTTCAGAGACAA--GAGCACCTGCC------CGGCGCTGGGTTTTGGAGGACCG----------------------
------GAGGCAATTTCAGCTAGTGCTAGTATGTAAGCTCTGAGCATTT-------------------------------
----ATGTAATCACATGTAACATCA--------------------------------AGTAAGTGAAACCAACGAGATTC
AGACATAGAAGCTCCG--------------------------AGCACATTTTTCCATGGCG-------------------
--------------------------------------------------------------------------------
---------------------------------------------------TTTCACGTCTGCCAGCCAGCGCATCGAAA
TGCATGGTTCTGTCCAGTGACGC---CAGCCACACATCCCATCATGCGATTTTCTGGGTGAAGGTAGTGCTTTAAACGCT
CTTATAGTATTTTTTCATGAAGGGAGTAACATTAAGTAAGTGAAGCCAAAGAGAATCAGAGAAGTGACTGTGCGCACAGA
ATCCTGCCAGCCAGCCAGCACGTCGAAATG-----------GGCTGAGCTAGCGTATCATACTTGCATTCTTGAGTCTTG
GGTGC-CTGGTATGTCGACACGTCGG---TCAGGACTAGGACCAGAGCTTTGCATAGGGCCTGC--GCGCGCACGCAGGC
GACATCATTCCGTTCCGTGGCGACACGCATACGCACGGCAAGCCCCACCACACGAGTTGGTTCGTTCGTTCGTTCGTTCG
TTGGGCGCTGTAGTGCAGAGCTCAACGTGAGATAC---GCACCACTGCTTGAGAAAAAAAAGGGG------------AAA
TGGAAGCGCATTCTCTATGCGTGTACTACGAA----CCAAACATGGCGCTTTCGGGTTCCCCGAAGCAATC---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------TCTCTCTG
CTTTCTTTCCTTTCCCCGTGCGTGCTGTGCTGCAATCATGCGGCAGTCAGCA---TGTTATTCTTTCCGGGAAGACTGCC
CTCTGCCGCCGGCAGTCTAGTAGACTAGTAGTGCCACCGCCCGCCATCATCACAGC-CCTGCAAAGCCCTTTTGCCGCTA
ATCACAGCGG---CAGGCAGCATGTTCTTAATCCCATTCTCCTTTCTAGTAGC---CGGCAATATTTGCAGCTGCAGCTC
AGCTCCTTCGGGTCGTCA----GCCAGTTTACCCACTCCAGCGGGCCTCATGCTCGCCATGTCCCGTGCATG--------
-TCGGGAACCATAGCTAGCCAGCACAGGTCACTCACGGCGGTGGTTCGGCCGCCCCTTTCCTCCA-------------CA
GG----ACGGGACGCCGCTAGCTGCCGCGGCGCACAGCGGGCAGATGGGCGCCGCGAATTATTATTTTGGCGCTGCCCCG
CTAGCTCCCGCCACTGCCTGTCTACTCT-CGCCACCACCCCACGTTTCCGTCCCAGGCTCCAGCCCCATGTGCCCC----
----
>SNPs
------------------------------------------------------------------------S-------
-------------S--S-----------SSSSS-----------------------------SS----------------
----------------S----------------------------SSSS-----S-S-----SS-------------S--
-----------------------------------S-------S------------------------------------
----------S----------------------------------S-SS--S--S-------------------S---S-
S-------------S----S---S-----------------S------------S--S---SSS-SSS-SSSSSSS-SS-
SS-S-SSSSSSS-S-SSSS-S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S-------S----SSSSSSSSS
SSSSSS--SSSSS-SSSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS-S-S---S-S---------S--SSS-S-----S------------------------------------------
-------------------------------------------------S-----S------------------------
---------------------------------------------S----------------------------------
------SS-S------------------------S-----------------------------S-----S--S------
-----S----S-S---------------------------------S---------------------------------
---S---------------------------S--------S----SSSSSSSSS-S------------------------
-----------------------------------S-------------S-SSSSS-S--SS--S-SSSSSSSSSSSSSS
SSSSSSSSSSSSSSS-----------------------------------------------------------------
-----------------------S-S--SSSSSS----------------------------------------------
---------------------------------------S------------------------------------S---
----------S---------------------------------------------------------------------
-------------S----------------------------------------------------S-SSSSSSSSSSSS
SSSSSSSSSS------------------------------------------S--SSSSSS---SS--------------
--------------------------------------------------------------------S-----------
--------------------S-----S------------------S-SSSS-SSS-SSSS--SSS-S----S-SS---SS
S-SSSSSSS-SS-SSSS-S--------------------------------------------SSSSS------------
--S-------------------------SS--------------------------------------------------
--S----------------------S---SS----------------SS--SS-S----SS-SS-------SS-------
--------S-S-SS--------------------------S---------S---SSSS-S-SSSSSSSSSSSSS------
-------------------S----------S--S--------SS-S--S--SS-SS-S-----SS------SSS---S-S
SSSS-------SS------------SS-------------------SSS-------------------------------
---------------------S-----------------S----------------------------------S--S-S
--------SSS-SSSS-S-SS-S-SS------SS--------------------S---------S-----------SSS-
-S--------S----S-SSS-SSSS-SS-S-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS---------SS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------
S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S--------SS-SSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----SS------S------S---------
--SS-SSSS-S-SSS-SS-SSS-SSS--S--SS--S--SS-------SS----S-S------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--SS------S---------------SSS-------S----------S--S-------------S---------------
-S----------S----------------------------------------------S--------------------
---------------------------------------S----------------------S--SSSSSSSSSSSS---
-------------------------S----------------------------S-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------S-----------------------------------------------------------------------
-----------------------------------------S--------------------------------------
--------------------------------------------------------------------------------
------------------SSSS----------------------------S-----------------S---SSSSSSSS
S-------------------------------S------------------------------------S----------
--SSSS--------------------------------------------------------------------------
------------------------S---------------------------------------------------SSSS
SSSS
>forward_1025
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------ATTGTTCCAGATGCGCGTTG---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>reverse_2629
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------TGCGCAACCTCT
CAGAATGT------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>forward_2422
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--TCTACGCGCAGATGATGGTC----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>reverse_4202
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------AGCCATCATCACAGCTCTGC-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
