>input_sequence_48444
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--------------------------------------ATGGCCATGTCCTCCAATCTCGCCCGCTCCCTCCCGGACAGC
CCTGCCGGGGACTTCCGTCCGGCGTCGCTGCTCTCGAAGATGGCGAGCCGTGGCCGACGCCCGTCTCAGCTAGTCACCTC
CGCGGTGTCGGCCGACGAAGCGCCGGCCAACATGTCGCCCGG------CTCCGTGGTCGGAGACATGGAGCGCGGCACTC
TCGCCGAGAAGACAGGCCGCTCCGACGGCCAGCTGACGTCGCGGTGGCGGGAGCTCCACGGCAGCAACGACTGGCAGGGG
CTACTGGACCCCATCGACACGGTGCTCCGGGGAGAGCTCATCCGGTACGGCGAGTTCGCGCAGGCCTGCTACGACTCCTT
TGACTACGACCGCTTCTCCCGCTACTCCGGCAGCTGCAAGTACCCGACGCGCACCTTCTTCCAGGACGTGGGTCTTGCCG
GCGTCGGCTACGAGGTCACCCGGTACCTCTACGCCACATGTCACCCAAGCTACCCAAACTTCAGCATCTGGAAGCACAAC
CCGGGCGACGACAAGCTGTGGAGCGAGTCCGCCACTTTCGTCGGCTTCGTCGCCGTGTCCACGGATGAGGAGACGGCGCG
CATTGGACGTCGGGACATCGCCGTCGCCTGGCGCGGCACCGTGACCCGGCTGGAGTGGGTGTCCGACCTGACGGCGATGC
TGAAGCCGCTCACTGCATGTGGGGTGCCGTGCCCCGACCCGAGCGTGAAGGTGGAGAGGGGGTTCGTCGACCTATACATC
GGCAAGGACCCAACGTGCCGGTTCAGCAGCTACTCGGCGCGCGAGCAGGTGCTCGCCGAGGTGCGGAAGCTGGTGGAGCG
ATACGCTGCGAGGGGCGAGGAGGTTGGCGTGACGGTCACCGGCCACAGCCTCGGCAGCGCGCTGGCCATGATCAGCGCCT
TCGACATCGCCGAGAGTGGAGCCAACGTGTCTCCGTCGGCCGGCGGCAAGAAAGCGCCGGTGTGCGTCTTCTCCTTCGCC
GGACCGCGCGTGGGGAACACCAGGTTCAAGGAGCGCTTCGAGGGGGAGCTGGGCGTGAAGGCGCTGCGCATCCGCAACGT
GCACGACATGGTGCCTAAGGTGCCCGGTTTTCTGTTCAACGAGGTGATATTCCCGGCGGTGCTGCTGCGGGTGGCGGATG
CGCTAAGGGTGCCGAGCGTGTACACCCACGTCGGCGTCGAGCTCGCGCTGGACCACATTGTGTCGCCATTCCTCAAACCC
ACCGGAGACCTGGCGAGCTACCACAACCTAGAGGCGCACCTCCACCTACTCGACGGCTACCGGGCACATGGCCAGCCGTT
CGAGCTCGGTGGAAGGGACCCGGCGCTGGTCAACAAGGCCGCCGACTTTCTTAGAGACGAGCACATGGTGCCTCCCGGGT
GGCGGCAGGAGGAGAATAAGGGCATGGTGAGGACGGAGGACGGACGATGGGCATTGTTGCAGCTTCCGAGGGATGTTGAA
GCTCACCCGGTCCCGGATGACATCGACATCCACCTCGCTGCGCTCGGCCTCCTTGTGCAGGAGCAAGATGGTATATGA--
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>chr3A_1_TraesCS3A01G498600
TTGAGGAATCCGTGTGTTTTCTTGTCCTGCTTGGACCGGTCCGCCCGAATACTTTCCGGCCGACATTCAATGCAACAGAG
ACAATTGTACACAGCGATGGATCCTTGCCGGCTGGTATTTTTGGCCGAGGAAATCACCATGTACAATAGATTGATTGATC
ATTTGTGGATACATGCATTAGTGA----------------------TTCCGGCGATCAAGCCGGTGGCGGTGGCCTCAT-
-------------------------------------AGGAAGCTGCAGCGACGACGCCGCGACTGATCAGGACATCATA
CCGCCGGTTCTGTGGCCTGCTGGTAGATTTGATGCCAGGTCGGGGGCTTGGAGCTCCCACTTGAAGGGCACTCAGACAGT
CAGGCTAGCTCTGATCGATATTGGGCATGCGCTGTTGATCATGGGCGATGGCAACGACGAGGCCTCACGAGGATCGTCAC
CGCGAGGGATTTGACAAATTAGGAAATGAAAATAATGACAAAACTACCCCGCTAATCAACGGCTGAGATGATTCAATACT
AC---------TCGCTTTCAGAGGTAGTATGATGCACCGTAAAAATTCTCAATTTCTAAATTTATTTCAGAATTTTCGAC
GATGCGCTTTCAGTGGGAGGAGCCGTTTTCATCGACGATTAGGCGTCTATGATGGCTTCGTAAATCTCAAGATGATATGT
CGATTCAGTCTCTCGGAGATGTTCATAGGAGTAGGTGTGCGTTCATAGGGATGAACATATGCGCATATGTATGAGTCAGT
ACTATGTTAAAAAAAATGATTCACAAAGCTAGCCAGGTGCATGCACATCTCAAAACCGAAAT------AAAGAAAAGCTT
TCTGCATGCATGTGCATCGGCGCATGTGGACCCTCCTGAAAGATCAGCTGTCAGCCTGGCCAGTGTACCACACGGACAGG
TGTACTGTATATATACACCAGACCAGACCCAACTGTTAAACCTCACACATCACAAATCACAATTCATAGCGCACAAGTAC
GTTCGTGCATAGTACATCTCGCGAGGACAGTAAC---AATGGCCATGTCCTCCAATCTCGCCCGCTCCCTCCCGGACAGC
CCTGCCGGGGACTTCCGTCCGGCGTCGCTGCTCTCGAAGATGGCGAGCCGTGGCCGACGCCCGTCTCAGCTAGTCACCTC
CGCGGTGTCGGCCGACGAAGCGCCGGCCAACATGTCGCCCGG------CTCCGTGGTCGGAGACATGGAGCGCGGCACTC
TCGCCGAGAAGACAGGCCGCTCCGACGGCCAGCTGACGTCGCGGTGGCGGGAGCTCCACGGCAGCAACGACTGGCAGGGG
CTACTGGACCCCATCGACACGGTGCTCCGGGGAGAGCTCATCCGGTACGGCGAGTTCGCGCAGGCCTGCTACGACTCCTT
TGACTACGACCGCTTCTCCCGCTACTCCGGCAGCTGCAAGTACCCGACGCGCACCTTCTTCCAGGACGTGGGTCTTGCCG
GCGTCGGCTACGAGGTCACCCGGTACCTCTACGCCACATGTCACCCAAGCTACCCAAACTTCAGCATCTGGAAGCACAAC
CCGGGCGACGACAAGCTGTGGAGCGAGTCCGCCACTTTCGTCGGCTTCGTCGCCGTGTCCACGGATGAGGAGACGGCGCG
CATTGGACGTCGGGACATCGCCGTCGCCTGGCGCGGCACCGTGACCCGGCTGGAGTGGGTGTCCGACCTGACGGCGATGC
TGAAGCCGCTCACTGCATGTGGGGTGCCGTGCCCCGACCCGAGCGTGAAGGTGGAGAGGGGGTTCGTCGACCTATACATC
GGCAAGGACCCAACGTGCCGGTTCAGCAGCTACTCGGCGCGCGAGCAGGTGCTCGCCGAGGTGCGGAAGCTGGTGGAGCG
ATACGCTGCGAGGGGCGAGGAGGTTGGCGTGACGGTCACCGGCCACAGCCTCGGCAGCGCGCTGGCCATGATCAGCGCCT
TCGACATCGCCGAGAGTGGAGCCAACGTGTCTCCGTCGGCCGGCGGCAAGAAAGCGCCGGTGTGCGTCTTCTCCTTCGCC
GGACCGCGCGTGGGGAACACCAGGTTCAAGGAGCGCTTCGAGGGGGAGCTGGGCGTGAAGGCGCTGCGCATCCGCAACGT
GCACGACATGGTGCCTAAGGTGCCCGGTTTTCTGTTCAACGAGGTGATATTCCCGGCGGTGCTGCTGCGGGTGGCGGATG
CGCTAAGGGTGCCGAGCGTGTACACCCACGTCGGCGTCGAGCTCGCGCTGGACCACATTGTGTCGCCATTCCTCAAACCC
ACCGGAGACCTGGCGAGCTACCACAACCTAGAGGCGCACCTCCACCTACTCGACGGCTACCGGGCACATGGCCAGCCGTT
CGAGCTCGGTGGAAGGGACCCGGCGCTGGTCAACAAGGCCGCCGACTTTCTTAGAGACGAGCACATGGTGCCTCCCGGGT
GGCGGCAGGAGGAGAATAAGGGCATGGTGAGGACGGAGGACGGACGATGGGCATTGTTGCAGCTTCCGAGGGATGTTGAA
GCTCACCCGGTCCCGGATGACATCGACATCCACCTCGCTGCGCTCGGCCTCCTTGTGCAGGAGCAAGATGGTATATGATC
GAGCACATGATTCATATAGCAAACCAAAGAGGATTCAGATTCCTTTCCAAGGATTTTCAATGTTTTGGAATCTAACTCTT
TTGTG---------------------------------------------------------------------------
--------------------------------------------------TGTTTATTGTCCTTTAGCTATTGCTGAAGT
TTTAGTTTGATCTCGAGTTTGTATCAATGTTTTTGAACTCTTAAACATCTAAATTGTTTACATTTCTTCACATGTCCCTC
TCATCGCTGTTATAGTCA-----------------------------------TTACATGGCAGCAGTTTCAGACACTAA
AAACGAAATTCAAAAGCTAAATCATCTGTAGTACTAGTGATTCTTTAAACACTATGAATGCATATTATTTATAGTATTCC
AGGACAATCATAGATCTCAGTATTTAAAAAAATTGCATG-TTTTTAATGTCTATTTTGTCTATTTTGAATTTATCTCATA
TTTCAGTAACTTTATGAATAGAATACATGTTATTTTGAATGTCAATTT-------GCCCTAATTTTTGTTTCCCATCTAG
TATATAGCAAAAAAAACCACCACATTACGGGTTAGGGCTGCAAAAAGCTACCACTTTTTTTCTATAATTTTCAAAAATCT
ACCACAAAATTGGCTGGCTGTTCCAAAAAACACTAATGACTTGATGATTAAAATTAGATCCGGATTATGACAGGGCGGGC
CCGCATGTTTGTTTGACCGCTAGGTTGACCCTTAAGTCTGATGTTATGACAAGTGGGCCCCCATGTCAGCTTCTTCTTTG
CCCCTTCTTCCCTAGAACCACCGACCTCATTTTCCTCCGTCAATGGCCATCATCAAGGGGAGCCGCGTCTGAAGCCATCG
GGAGGGGAGGTAGGGTAGGGGAGGAGGTGCACTTGAGACCGTCGGGAGGGGAGGATGAGCTCGCCGGCTCGAGCCCTGGC
CAGATCAGGCTGCCCACGGCCGGAATGTGCGTCCATGGCTGACCATGGCGGGGCTGCCGATGCAGTAGTGAGCAGCAGCC
GCAGCGACGGCGATGACAGCAGCGGCTGCGGGCAACAACAGTGAGC
>chr3A_1
TTGAGGAATCCGTGTGTTTTCTTGTCCTGCTTGGACCAGTCCGGCCGAATACTTTCCGGCCGACATTCAATGCAACAGAG
ACAATTGTACACAGCGATGGATCCTTGCCGGCTG-TATTTTTGGCCGAGGAAATCACCATATACAATAGATTGATTGATC
ATTTGTGGATACATGCATTAGTGA----------------------TTCCGGCGATCAAGCCGGCGGCGGTGGCCTCAT-
-------------------------------------AGGAAGCTGCAGCGACGACGCCGCGACTGATCAGGACGTCGTA
CCGCCGGTTCTGTGGCCTGCTGGTAGATTTGATGCCAGGTCGGGGGCTTGGAGCTCCCACTTGAAGGGCACTCAGGCAGT
CAGGCTAGCTCTGATCGATATTGGGCATGCGCTGTTGATCATGGGCGATGGCAACGACGAGGCCTCACGAGGATCGTCGC
CGCGAGGGATTTGACAAATTATGAAATGAAAATAATGACAAAACTACCCCGCTAATCAACGGCTGAGATGATTCAATACT
AC---------TCGCTTTCAGAGGTAGTATGATGCATCGTAAAAAATCTC------------------------------
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>chr5A_1
TTGAGGAATCCGTGTGTTTTCTTGTCCTGCTTGGACCGGTCCGGCCGAATACTTTCCGGCCGACATTCAATGCAACAGAG
ACAATTATACACAACGATGGATCCTTGCCGGCTGGTATTTTTGGCCGAGGAAATCACCATGTACAATAGATTGATTGATC
ATTTGTGGATACATGCATTAGTGA----------------------TTCCGGCGATCAAGCCGGCGGCGGTGGCCTCAT-
-------------------------------------AGGAAGCTGCAGCGACGACGCCGCTACTGATCAGGACGTCGTA
CCGCCGGTTCTGTGGCCTGCTGGTAGATTTGATGCCAGGTCGGGGGCTTGGAGCTCCCACTTGAAGGGCACTCAGGCAGT
CAGGCTAGCTCTGATCGATATTGGGCATGCGCTGTTGATCATGGGCGATGGCAACGACGAGGCCTCACGAGGATCGTCAC
CGCGAGGGATTTGACAAATTAGGAAATGAAAATAATGACAAAACTACCCCGCTAATCAACGGCTGAGATGATTCAATACT
AC---------TCGCTTTCAGAGGTAGTATGATGCACCGTAAAAA-----------------------------------
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>chr7A_1
TTGAGGAATCTGTGTGTTTTCTTGTCCTGCTTGGACCGGTCCGGCTGAATACTTTCCGGCCGACATTCAATGCAACAGAG
ACAATTGTACACAGCGATGGATCCTTGCCGGCTGGTATTTTTGGCCGAGAAAATCACCATGTACAATAGATTGATTGATC
ATTTGTGGATACATGCATTAGTGA----------------------TTCCGGCGATCAAGCCGGCAGCGGTGGCCTCAT-
-------------------------------------AGGAAGCTGCAGCGACGATGCCGCGACTGATCAAGACGTCGTA
CCGCCGGTTCTGTGGCCTGCTGGTAGATTTGATGCCAGGTCGGGGGCTTGGAGCTCCCACTTGAAGGGCACTCAGGCAGT
CAGGCTAGCTCTGATCGATATTGGGCATGCGCTGTTGATCATGGGCGATGGCAACGACGAGGCCTCACAAGGATCGTCAC
CGCGAGGGATTTGACAAATTAGGAAATGAAAATAATGACAAAACTACCCCGCTAATCACCGGCTGAGATGATTCAATACT
ACTCGCTTTCATCGCTTTCAGAGGTAGTATGATGCACCGTAAATATCTC-------------------------------
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>chr1A_1
TTGAGGAATCCGTGTGTTTTCTTGTCCTGCTTGGACCGGT---------------CCGGCCGACATTCAATGCAACAGAG
ACAATTGTACACAGCGATGGATCCTTGCCGGCTGGTATTTTTGGCCGAGGAAATCACCATGTACAATAAATTGATTGATC
ATTTGTGGATACATGCATTAGTGA----------------------TTCCGGCGATCAAGCCGGCGGCAGTGGCCTCAT-
-------------------------------------AGAAAGCTGCAGCGACGACGCCGCGACTGATCAAGACGACGTA
CCGCCGGTTCTGTGGCCTGCTGGTAGATTTGATGCCAGGTCGGGGGCTTGGAGCTCCCACTTGAAAGGCACTCAGGCAGT
CAGGCTAGCTCTGATCGATATTAGGCATGCGCTGTTGATCATGGGCGATGGCAACGACGAGGCCTCACGAGGATCGTCAC
CGCGAGGGATTTGACAAATTAGGAAATGAAAATAATGACAAAAGTACCCCGCTAATCAACGGCTGAGATGATTCAATACT
GT---------TCACTTTCAGAGGTAGTATGATGCACCGTAAAAAATCTCAA----------------------------
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>chrUn_1
TTGAGGAATCCGTGTGTTTTCTTGTCCTGCTTGGACCGGTCCGGCCGAATACTTTCCGGCCGACATTCAGTGCAACAGAG
ACAATTGTACACAGCGATGGATCCTTGCCGGCCGGTATTTTTGGCCGAGGAAATCATCATGTACAATAGATTGATTGATC
ATTTGTGGATGCATGCATTATTGACATATGTGATCAGCCGGTTGTTTTCCGGCGATCAAGCCGGCGGCTGTGGCCGCTGC
ACACAAACGACGAACGACAACATCGGGAACACTTCAGAGGAAGCTGCAGCGACGACGCCGCGACTGATCAGGACGCTGTA
CCACCGGTTCTGTGGCCTGCTGGTAGATTTAATGCCAGGTGGGGGGCTTGGAG---------------------------
-AGGCTAGCTCTGATCGATATTGGCCATGCGCTGTTGATCATGGGCGATGGCAACGACGAGGCCTCACGAGGATCGTCAC
CGTGAGGGATTTGACAAATTAGGAAATGAAAATAATGACAAAACTATCCCGTTAATCAACGGCTGAGATGATTTAATACT
AC---------TCGCTTCCAGAGGTAGTATGATGCACCGTAAAAAATCTC------------------------------
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>chr3B_745
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-------------AAATGGTTCACAAAGCTAGCTAGGTGCACGCACCTTTCAAAAAAGAAAAAGAGAAAAAGAAAAGCTT
GCTGCATGCATGTGCATCGGCGCATGGGGACACTCCTGAAAGATTAGCTGTCAGCCTGGCCAGTGTACCACACCGACAGC
TGTGGTGTATATATAC-----ACCAGACCCAAGTGTTAAACCTCACGATTCAG--------------AGCGCACAAGTAC
GTACGTGCATAGTACATCTCGCGAGCACAGTAACAATAATGGCCATGTCCTCCAACCTCGCCCGCTCCCTCCCGGACAGC
CCTGCCGGGGACTTGCGTCCCGCGTCGCTGCTCTCGAAGATGGCGAGCCGTGGCCGACGCCCGTCTCAGCTAGTCACCTC
CGCGGTGTCGACCGACGAAGCGCCAGCCAACATGTCGCCCGG------CTCCGTGGTCGGAGACATGGAGCGCGGCACTC
TCGCCGAGAAGACCGGCCGCTCCGACGGCCAGCTGACGTCGCGATGGCGGGAGCTCCACGGCAGCAACGATTGGCAGGGG
CTGCTGGACCCCATCGACACGGTGCTCCGGGGAGAGCTCATCCGGTACGGGGAGTTCGCGCAGGCTTGCTACGACTCCTT
CGACTACGACCGCTTCTCCCGCTACTCCGGTAGCTGCAAGTACCCGACGCGCACCTTCTTCCAGGACGTCGGTCTTGCCG
GCGTCGGCTACGAGGTCACCCGGTACCTCTACGCCACATCTCACCCAAGCTACCCAAACTTCAGCATCTGGAAGCACAAC
CCGGGCGACGACAAGCTGTGGAGCGAGTCCGCCACTTTCATCGGCTTCGTCGCCGTGTCCACGGATGAGGAGACGGCGCG
CATTGGACGTCGGGACATCGCCGTCGCCTGGCGCGGCACCGTGACCCGGCTGGAGTGGGTGGCCGACCTGACGGCGATGC
TGAAGCCGCTCTCTGCCTGTGGTGTGCCGTGCCCCGACCCGAGCGTGAAGGTGGAGAGGGGGTTCGTCGACCTATACATC
GGCAAGGACCCGACGTGCCGGTTCAGCAGCTACTCGGCGCGCGAGCAGGTGCTCGCCGAGGTGCGGAAGCTGGTGGAGCG
ATACGCTGGGAGGGGCGAGGAGGTTGGCGTGACGGTCACCGGCCACAGCCTCGGCAGCGCGCTGGCCATGCTCAGCGCCT
TCGACATCGCCGAGAGTGGAGCGAACGTGTCTCCATCGGCCGGCGGCAAGAAAGCGCCGGTGTGCGTCTTCTCCTTCGCC
GGACCGCGCGTGGGGAACACCAGGTTCAAGCAGCGCTTCGAGGGGGAGCTGGGCGTGAAGGCGCTGCGCATCCGCAACGT
GCACGACATGGTGCCCAAGGTGCCCGGTTTTTTGTTCAACGAGGTGATATTCCCGGCGGTGCTGCTGCGGGTGGCGGATG
CGCTAAGGGTGCCGAGCGTGTACACCCACGTCGGCGTCGAGCTCGTGCTGGACCATATTGTGTCGCCATTCCTCAAACCC
ACCGGAGACCTGGCTAGCTACCACAACCTAGAGGCGCACCTCCACCTGCTCGACGGCTACCGGGCACATGGCCAGCCGTT
CGAGCTCGGTGGAAGGGACCCGGCGCTGGTCAACAAGGCCGCCGACTTTCTTAGAGACGAGCACATGGTGCCTCCCGGGT
GGCGGCAGGAGGAGAACAAGGGCATGGTGAGGACGGAGGGCGGACGATGGGCATTGCTGCAGCTTCCGAGGGATGTTGAA
GCTCACCCGGTCCCGGATGACATTGCCATCCACCTCGCTGCGCTCGGCCTCCTTGTGCAGGAGCAAGATGGTATATGATC
GAGGACAAGATTCATATAGCAAGCCAAAGAGGAATCAAAATCGTTGCCATGGATTTTCAATGTTTTGAAATGTAACTGTT
TTGTACTCCCTCCGTCCGGAAATACTTGTCATCAAAATGAATAAAAGGGGATGTATCTAAATGTATTTTAGTTCTACATA
CATCCTTTTTTGTTCATTTTGATGACAAGTATTTTCGGACAGAGGGAGTATGTTTATTGTCTTTTAGCTATTGCTGAAGT
TTTAGTTTGACCTCGAGTTTGTATCAATGTTTTTGAACTCTTAAACATCTAATTTGTTTACATTTCTTCACATGTCCGTC
TCATAGCTGTTATAGTTTGTATCAATGTTTTTGACCTCGAGTTTGTATCAATGTTACATGGCAGCGGTTTCATACACTAA
AAACGAAATTCAAAAGCTAAATCATGTGTAGTACTAGGGATTCCATAAACACTATAAATGCATATTATTTAAAATATTCC
AGGACAATCATAGATCTCGGTATTTCAAAAAATTGCATG-TTTT-AATGTCTATTT-TCTTTATTTGAATTTCTCTCATA
ATTCAGTAACTTTATAAATAGAATACATGTTATTTTG-------------------------------------------
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>chr3A_1097
CGCCGCCT------------------------------------------------------------------------
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-----------------------------------------------------------------GTCTCATGTCACGTC
GGCGGTGTCAGCCGACGAAGCGCCACCGACCAAGGAGAAGAAGGCGGACTCCTTCGTCGGAGACATGGAACGTGGCACCC
TGGCCGAGGATTCCGGCCGCTCCGACGGCGAGCTGACGTCGCGGTGGCGGGAGATGCACGGCTGCAACGACTGGGACGGC
CTGCTGGACCCCATCGACAGGACGCTCCGCGGGGAGCTCATCCGGTACGGCGAGTTCTCGCAGGCCTGCTACGACTCCTT
CGACTACGACCGATACTCCCGCTACGCCGGCACCTGCAAGTACCCCCAGGAGTCCTTCTTCAAGGACGTCGGCCTCGCCG
GCGTCGGTTACCAGGTCGCCCGCTACCTCTACGCCACCTCCCACGCCCGCTTCCCCAGCTTCGGCGTCCGGAAGCACAAC
CCCAGCGACGACAGGATGTGGAGCGAGACGGGCACCTTCATCGGCTTCATCGCCGTGTCCACCGACGAGGAGACGGCCCG
CATCGGCCGCCGGGACATCGCCGTCGCCTGGCGAGGCACCGTCACAAAGCTCGAGTGGATCTCCGACATAACCGCGTTCC
TCAAGCCTGTCGGCCAGTTCGGGCTGCCGTGCCCTGACCCCAGCGTCAAGGTGGAGGAGGGTTTCGCGGAGCTTTACACC
AGCAAGAACCCGGATTGCAAGTACTGCAAATACTCGGCGCGGGAGCAGGTGCTCGCCGAGGTGCGGAAGCTGGTGGAGCG
GTACACCGGGCAGGGCGAGGAGGTGAGCGTCACCGTCACAGGCCACAGCCTCGGCGCCGCGCTGGCCGTGCTCTGTGCCT
ACGACATCGCCGAGACACGAGCCAACGTGTCCA------CCGGCGGTGCCAAGGCGCCCGTTTGTGTCTTCTCCTACTCG
GGCCCGCGCGTTGGGAACCCCATGTTCAGGGAGCGGTTCGAGGGGGAGCTGGGCGTGAAGGCGCTGCGCATCCTCAACGT
GCACGACTCGGTGCCCAAGGTGCCCGGCA---TCTTCACCGAGGCCGTCCTCCCCATGCCGCTGCTGCGCGTGGCCGGCG
CGCTCGGCCTGCCCAGCGTCTACTCCCACATCGGCGTGGAGCTGGCGCTCGACCACAAGCTCTCGCCGTTCCTCAAGGAC
GTCTTCGACCTCGCGTGCTACCACAACCTAGAGGCGCACCTCCACCTTCTCGACGGCTACCAGGGCCGCGGCAAGGAGTT
CAAGCTCGGGGGCAGGGATCCCGCGCTCGTCAACAAGGCCGCCGACTTCCTCATGGACGAGCACATGGTGCCCGACGGGT
GGCGCCAGGAGTTGAACAAGGGCATGGTCAGGACCGAGGACGGGCGGTGG------------------------------
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>chr3D_1097
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------------------------------------------------------CGACGCCCGTCGTCTCATGTCACGTC
GGCGGTGTCAGCCGACGAAGCGCCACCGACCAAGGAGAAGAAGGCGGACTCCTTCGTCGGGGACATGGAGCGCGGCACCC
TGGCTGAGGAGTCCGGCCGCTCCGACGGCGAGCTGACGTCGCGGTGGCGGGAGATGCACGGCTGCAACGACTGGGACGGC
CTGCTGGACCCCATCGACAGGACGCTCCGCGGGGAGCTCATCCGCTACGGCGAGTTCTCGCAGGCCTGTTACGACTCCTT
CGACTACGACCGCTACTCCCGCTACGCCGGCACCTGCAAGTACGCCCAGGACTCCTTCTTCAAGAACGTCGGCCTCGCCG
GCGTCGGCTACGACGTCACCCGCTACCTCTACGCCACCTCGCACGCCCGCTTCCCCAGCTTCGGCGTCCAGAAGCACAAC
CCCAGCGATGACCGGATGTGGAGCGAGACCGGTACCTTCATCGGCTTCATCGCCGTGTCCACGGACGAAGAGACGGCGCG
CATCGGCCGCCGGGACATCGCCGTCGCCTGGCGAGGCACCGTCACAAAGCTCGAGTGGATCGCCGACATAACCGCGTTCC
TCAAGCCCATCGGCCAGTTTGGGCTGCCGTGCCCTGACCCGAGCGTGAAGGTGGAGGAGGGCTTCGCGGAGCTCTACACC
AGCAAGAACCCCGACTGCAAGTACTGCAAGTACTCGGCGCGGGAGCAGGTGCTCGCCGAGGTGCGGAAGCTGGTGGAGCG
GTACACCGGGCAGGGCGAGGAGGTGAGCGTCACCGTCACCGGCCACAGCCTCGGCGCCGCGCTTGCCGTGCTCTGCGCCT
ACGACATCGCCGAGACGCGCGCCAACGTGTCTA------CCGGAGGTGCCAAGGCCCCGGTCTGCGTCTTCTCCTACTCG
GGCCCGCGCGTGGGGAACCCCATGTTCAGGGAGCGGTTCGAGGGCGAGCTGGGCGTGAAGGCGCTGCGCATCCTGAACGT
GCACGACTCGGTGCCCAAGGTGCCCGGCA---TCTTCACCGAAGCCGTCCTCCCGATGCCGTTGCTGCGGATCGCCGGGG
CTCTCGGCCTGCCCAGCGTCTACTCCCACATCGGCGTGGAGCTGGCGCTCGACCACAAGCTCTCGCCCTTCCTCAAGGAC
GTCTTCGACCTCGCGTGCTACCACAACCTCGAAGCGCACCTCCACCTTCTCGACGGCTACCAGGGCCGCGGCAAGGAGTT
CAAGCTCGGGGGTAGGGACCCGGCACTCGTGAACAAGGCCGCCGACTTCCTCATGGACGAGCACATGGTGCCTGACGGGT
GGCGCCAGGAGTTGAACAAGGGCATGGTCAGGACGGAGGATGGGCGGTGGATGCTGCCGCATCGCCCGAGGAATGTTGAG
GAACAC------CCAGAAGACACCGATCTCCACCTCGCTGAGCTCGGCCT------------------------------
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>chr3B_1166
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-------------------------------------------------TCCTTCGTGGGAGACATGGAGCGCGGCACCC
TGGCGGAGGAGTCCGGCCGCTCCGACGGCGAGCTGACGTCGCGGTGGCGGGAGATGCACGGCTGCAACGACTGGGACGGC
CTGTTGGACCCCATCGACAGGACGCTCCGCGGGGAGCTCATCCGGTACGGCGAGTTCTCTCAGGCCTGCTACGACTCCTT
CGACTACGACCGCTACTCCCGCTACGCCGGCACCTGCAAGTACGCCCAGGAGTCCTTCTTCAAGGACGTCGGCCTCGCCG
GCGTTGGCTACGAGGTCGCCCGCTACCTCTACGCCACCTCCCACGCCCGCTTCCCCAGCTTCGGCGTCAAGAAGCACAAC
CCCAGCGACGACCGGATGTGGAGCGAGACCGGCACCTTCATCGGCTTCATCGCCGTGTCCACCGACGAGGAGACGGCCCG
CATCGGCCGCCGGGACATCGCCGTCGCCTGGCGGGGCACCGTCACAAAGCTCGAGTGGATCGCCGACGTAACCGCGTTCC
TCAAACCTGTCGGCCAGTTCGGGCTGCCGTGCCCTGATCCGAGCGTCAAGGTTGAGGAAGGGTTCGCCGAGCTCTACACT
AGCAAGAACCCGGACTGCAAGTACTGCAAGTACTCGGCGCGGGAGCAGGTGCTCGCCGAGGTGCGGAAGCTGGTGGAGCG
GTACACCGCGCAGGGCGAGGAGGTGAGCGTGACGGTCACCGGCCACAGCCTCGGCGCCGCGCTGGCCGTGCTCTGCGCCT
ACGACATCGCCGAGACACGCGTCAACGTGTCCA------CCACCGGCGCCAAGGCGCCCGTCTGCGTCTTCTCCTACTCC
GGCCCGCGCGTCGGGAACCCCATGTTCAGGGAGCGCTTCGAGGGGGAGCTGGGCGTGAAGGCGCTGCGCATCCTCAACGT
GCACGACTCGGTGCCCAAGGTGCCCGGCA---TCTTCACCGAGGCCGTCCTCCCCATGCCGTTGCTGCGCGTGGCCGGCG
CGCTCGGCCTGCCCAGCGTCTACTCCCACATCGGCGTGGAGCTGGCGCTCGACCACAAGCTGTCGCCGTTCCTCAAGGAC
GTCTTCGACCTCGCGTGCTACCACAACCTCGAGGCGCACCTCCACCTTCTCGACGGCTACCAGGGCCGCGGCAAGGAGTT
CAAGCTCGGGGGCAGGGATCCTGCGCTCGTCAACAAGGCCGCCGACTTCCTCATGGATGAGCACATGGTGCCCGACGGGT
GGCGCCAGGAGTTGAACAAGGGCATGGTCAGGACCGAGGATGGGCGGTGGATGCTGCCGCATCGCCCGAGGAATGTTGAG
GAACAC------CCCGAAGACACCGATCTCCACCTCGCTGAGCTCGGCCTC-----------------------------
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>chr3A_1380
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-----------------------ACGCCGGCAGCTGCAGATACCCGAAGGAGTCCTTCTTCTCCGACGTCGGCCTTGCCG
GCGTCGGCTACGAGGTCACTTGCTGCCTCTATGCTACCTCACACATTAGCTTCCCAAGCTTCGGCATCCGGAAGCACAAC
CCTAGCGACGACAGGATGTGGAGCGAGACTGGCACCTTCATCGGCTTTGTGGCCGTGTCGACAGACGAGGAGACGGCCCG
GATCGGCCGCCGGGATATCGCCGTTGCTTGGCGCGGCACCGTGACACGGCTGGAGTGGATCGCCGACCTGACCGCGTTCC
TCAAGCCGCTCAGCCAGTTTGGGCTGCCGTGCAGAGACCCGAGGGTAAAGGTGGAAGAGGGGTTCGCCGAACTCTACACC
AGCAAAAACCCGGACTGCAAGTATTGCAAGTACTCGGCGCGGGAGCAGGTGCTCGCCGAGGTGCGGAAGCTGGTGGAGCG
GTACGCCGGGCAGGGTGAGGAGGTGAGCGTGACGGTCACCGACCACAGCCTCGGCAGCGCGCTGGCCATGATAAACGCCT
TCGACATCGCCGAGACGGGCGCCAACGTGTCCCCATCGGCCGGCGGCGCCAAGGCGCTGGTGTGCGTCTTCTCCTTCTCA
GGCCCGCGCGTGGGGAACACCAAGTTCAGAGAGCGGTTCGAGGGGGAGCTGGGCGTGAAGGCGCTGCGCATCCTCAACGT
GCATGACACGGTGCCCAAGGTGCCCGGCG---TGTTCACCGAGGCGGTCCTCCCGATGCCGCTGCTGCGCGCCGCAGACG
CGCTGGGGCTGCCAAGCGTGTACTCCCACATCGGCGTGGAACTGGCGCTCGACCACAGCCTGTCGCCCTTCCTCAAGAAC
ACATTGGACCTGGCTAACTACCACAACCTTGAGGCGCACCTCCACCTTCTGGACGGCTTTGTGGGGCGGGCACGGGAGTT
CAAGCTCGGCGGCAGAGACCCGGCGCTGGTGAACAAGGCGGCGGACTTCCTGAGGGACGAGCACATGGTGCCGCCCGGGT
GGCGGCAGGATGCAAACAAGGGCATGGTCAGGTCAGAGGA----------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------
>chrUn_2908
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-------------------------------ATTGCATGTTTTT-AATGTCTATTG-GTTTATTTTGAATTTCTCTCATG
TTTTAGGAACTTTATGAATAGAATACATGTTACTTTGGAGGTTTCCTGTTCTATCGCCTAATTTTCCGTTTCCCATTGAG
TATATAAGAAAAAACT--ACCACATTACGGGTTAGGGCTACAAAAAACTATCACTTTTTTTAAT---TTTTCAAAAATCT
ACCACAAAATTGGCTGGCTGTTCCAAAAAACACTAATGACTCGATGATTAAAATTTGATCCAGATTATGACAGGGCGGGC
CCACATGTTTGTTTGACCGCTAAGTAGACCGTTAAGTCTGACGTTATGACAAGTGGGCCCTCATGTCAGCTTCTTCTTTG
CCCCATCTTCCCTAGGACCACTGGCCTCATTTTCCTCCGTCAATGGACATCATCGAGGGGAGCCGCGTCTAAGGCCATCA
GGA-GGGAGGCAGGGTAGGGGAGGAGGTGCACTTGAGACCGTCGGGAGGGGAGGATGAGCTCGCTAGCTCGAGCCCCGGC
CAGATCAGGCTGCCCACGGCCGCGATGCGCGTCCATGGCTGACCATGGCGGGGCTGCCGACGCAGCAGTGAGCAGCAGCC
GCAG------------------------------------------
>SNPs
-------------------------------------------S------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------S---------------
--------------------------------------------------------------------------S--S--
---------------------------------------------------------------------------S----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS-----S--------------S-------S----S-S------SS----S------------------
S-------------------------S----S------------S----------------------------S-----S
---SS-----------SSSSS-----------S-------------SSS---SSSSSSSSSSSSSSS-------------
--S----------------------S-----------------------------S------------------------
--------------S-----S-----------------------------------------------------------
------------------------S-------------------------------------------------------
-------------S------------------------------------------------------------------
--S-----------------------------------------------------------------------------
S--------------------------------------------------------------------S----------
---------------------------------------S----------------------------------------
---------------------------------------S----------------------------------------
--------------------------------------------------------------------------------
----------------S---------------------------------------------------------------
-----------S--------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------S---------------------------------------------
--------------------------------------------------------------------------------
---------------S---------------S------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------S--------------------------------
--------------------------------------------------------------------------------
----------------S---------------------------------------S-----------------------
--------------------------------------------------------------------------------
---S---S--------------S----------S---S-S--S--S---S-----------------S---S-----S--
----S---------------------------------------------------------------------------
-------------------------------------------------------------S------------------
----------S-----------------------------------------S------------------------S--
----S-----------SS-----------------------------------------------S------S-------
-------------------------S-----------S-----SS----------S---------------S-S------
------------------S------S------------------S-----------S--S------------S-------
-------------------------------------S-S--SSSS-S----------SS-S---SS---------SS--
------SS------SSSS---------------------S------S---S----------SSSSSS-------------
-----------------------------------------S-------------S-----S------------------
--S-------------------S--S----S----------S------------------S-------------------
----S----------S-----S-S----------------------S-------S---------------S-S------S
---S------S-----------------------------------------------------SS----------S---
----------------------SS---S--------------------------------S----S--------------
----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_673
--------------------------------------------------------------------------------
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-------------TGGGAGGAGCCGTTTTCATC-----------------------------------------------
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----------------------------------------------
>reverse_2537
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--------------------------------------------------------TTGCAGCTTCCGAGGGATG-----
--------------------------------------------------------------------------------
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----------------------------------------------
>forward_842
--------------------------------------------------------------------------------
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----------------------ACAAAGCTAGCCAGGTGCAT--------------------------------------
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----------------------------------------------
>reverse_2977
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----------------CATTACATGGCAGCAGTTTCAGA-----------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------
