>input_sequence_48370
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-----------------------------------------------------------------ATGGAGGGGGCGTCA
AACTGGGGACCGGCGGCGATGGAGGTCCAGGCGGCGCCCAAGGCCAAGTTCAAGATCCCGGTGGACGATGACAGCAAGGC
CACCGAGTTCTGGCTCTTCTCGTTCTCGAGGTCGCACATGAGCGCCTTCCACCTCTCGTGGTTCTCCTTCTTCTGCTGCT
TCGTGTCCACCTTTGCGGCGCCGCCGCTCATGCCGCTCATCCGGGACAACCTCGGCCTCACGGCCAAGGACATCGGCAAC
GCCGGGGTCGCGTCCGTCTCGGGCGCCGTCTTCGCGCGCCTCGCCATGGGCACGGCCTGCGACCTGGTCGGTCCCC----
----------------------------------GCCTGGCGTCGGCGGCCATCATACTGCTCACCACCCCCGCGGTCTA
CTGCACCTCCATCATCAACTCGGCCTCCTCCTTCCTGCTCGCGCGCTTCTTCACCGGCTTCTCGCTCGCTTCCTTCGTGT
CCACGCAGTTCTGGATGAGCTCCATGTTCTCGGCGCCCAAGGTGGGGCTGGCCAACGGCGTCGCGGGAGGCTGGGGCAAC
CTCGGCGGGGGCGCCGTGCAGCTCCTCATGCCCTTCGTCTTTGAGGCCGTCCGCAAGATAGGCAGCACCAAGTTCGTGGC
GTGGCGCGTCGCCTTCTTCATCCCGGGCATCATGCAGACGGTGTCGGCCATCGCGGTGCTGGCGCTCGGGCAGGACATGC
CGGACGGCAACTACCGCAAGCTGCACAAGTCCGGGGAGATGCACAAGGACAGCTTCGGCAACGTGCTGCGCCACGCGGTC
ACCAACTACCGCGCCTGGATCCTGGCGCTCACCTACGGCTACAGCTTCGGCGTGGAGCTGGCCGTGGACAACATCGTCGC
CGAGTACTTCTACGACCGCTTCGACGTCAACCTCCACACCGCCGGCCTCATCGCCGCCACCTTCGGGCTGGCCAACATCG
TGTCCCGCCCAGGCGGCGGGCTCATGTCCGACTGGCTGTCCCAGCGCTACGGCATGCGCGGCAGGCTGTGGGGGCTGTGG
GTGATGCAGACCATCGGCGGCGTCCTCTGCGTCGTGCTGGGCATCGTCGACTACTCCTTCGGCGCCTCCGTGGCCGTCAT
GATACTCTTCTCCTTGTTCTGCCAGGCCGCGTGCGGCCTCACCTTCGGCATCGTGCCCTTCGTGTCGCGCAGGTCGCTGG
GGCTCATCTCCGGCATGACCGGCGGCGGCGGCAACGTCGGCGCCGTGCTCACGCAGGTCATCTTCTTCAGGGGCGGCAAG
TACAAGACGGAGACGGGGATCATGTACATGGGTATCATGATCCTCGCATGCACGCTGCCCGTCGCCTTCATCTACTTCCC
GCAGTGGGGCGGCATGCTCGCCGGGCCGCGGCCGGGGGCGACCGCCGACGACTACTACAACGGGGAGTGGACCGCGGAGG
AGCGGGACAAGGGGTACAACGCTGCCACCAAGCGTTTCGCGGAGAACAGCGTGCGCGAGGGCGGCCGGAGGGCGGCGTCA
GGCAGCGACTCAAGGCACACCGTCCCCGTCGACGGCTCGCCGGCGCCGGCCGACGTGTGA--------------------
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>chr1D_1_TraesCS1D01G035700
CGTAGTCTAATGGCGCACTGGGCTTGTA---CTTTTTTTAGAAAACACACAAACTTA-ATACTCACTCCATCCCAAAATA
GGTGTTTCAAGCTTAGCACAACTTTGTACTAGAGTTAGTATAAAGTTGAGACACTTATTTTGGGACGGAGGGAGTACTAT
ATAAACTTATTAAAACAACACAA---TTTTTTTAAAGCATGAACACGTTGATATACTACATAAATAGTTTGTTAAAAGTG
TGAAATTTTAAAATTATATGAGAATT-TGTTTAAATATATGGACATTTATAAAATTACTTTTATTTTTTATTAAAATGCG
AACA-TTTTTTCAAATTATAAATTATATTCTTAATTTTTAATTTTATTATGTGTATTTCTGTTAAATTACTGCATAGGTA
TTTTATGAAATGATATGAACTTTTTAACGTAATTTGTTTTAAATATATATATATTTTTTGTAACATGATAATAATTTAAG
TAATTTTTAGAAAAATGAAATGAAAAAGAACAAACCCGCTGAAAACTGAGCCACACTGTAGTCCATTTTAGCCACACGGG
CTCGTTATTTTATCATTTTAGCCACACTGTGGTCCATGGCATGCTGGCCCGCCTCCTTAGCTTCACGGACGTATACAAAC
ACCATTTGAACCGTATATGCACGTCCATGCCAAGTTGTGGAACCAGTTCAATGTATTTTGCAAGTTCAGGCACTAAAGTG
CACATTCGTGACAAGTTCAAGCACCAGTGTTGTATTTACCTCTATTATTATCGTATGAGTATCGGCGTCGGCTTCGGCGA
GCCGCGATGGCGGCCTTCCAGGAACCCCGTTGGATCACCGCCGCAATGTTTATTCATG----CCTTGCCCTCTCGTCGTT
TCCAACTCCGGTCCAGTCGCACTATAAATACCCGCCGCACCGATGAGGCTGTCCGTACTACCACACCGGCACGTCCCAGG
TTGCCAACACCGCGCTG------AGGCACTTGCATTGCATTGGTAGCAGCTAGCTAGC------GATGGAGGGGGCGTCA
AACTGGGGACCGGCGGCGATGGAGGTCCAGGCGGCGCCCAAGGCCAAGTTCAAGATCCCGGTGGACGATGACAGCAAGGC
CACCGAGTTCTGGCTCTTCTCGTTCTCGAGGTCGCACATGAGCGCCTTCCACCTCTCGTGGTTCTCCTTCTTCTGCTGCT
TCGTGTCCACCTTTGCGGCGCCGCCGCTCATGCCGCTCATCCGGGACAACCTCGGCCTCACGGCCAAGGACATCGGCAAC
GCCGGGGTCGCGTCCGTCTCGGGCGCCGTCTTCGCGCGCCTCGCCATGGGCACGGCCTGCGACCTGGTCGGTCCCC----
----------------------------------GCCTGGCGTCGGCGGCCATCATACTGCTCACCACCCCCGCGGTCTA
CTGCACCTCCATCATCAACTCGGCCTCCTCCTTCCTGCTCGCGCGCTTCTTCACCGGCTTCTCGCTCGCTTCCTTCGTGT
CCACGCAGTTCTGGATGAGCTCCATGTTCTCGGCGCCCAAGGTGGGGCTGGCCAACGGCGTCGCGGGAGGCTGGGGCAAC
CTCGGCGGGGGCGCCGTGCAGCTCCTCATGCCCTTCGTCTTTGAGGCCGTCCGCAAGATAGGCAGCACCAAGTTCGTGGC
GTGGCGCGTCGCCTTCTTCATCCCGGGCATCATGCAGACGGTGTCGGCCATCGCGGTGCTGGCGCTCGGGCAGGACATGC
CGGACGGCAACTACCGCAAGCTGCACAAGTCCGGGGAGATGCACAAGGACAGCTTCGGCAACGTGCTGCGCCACGCGGTC
ACCAACTACCGCGCCTGGATCCTGGCGCTCACCTACGGCTACAGCTTCGGCGTGGAGCTGGCCGTGGACAACATCGTCGC
CGAGTACTTCTACGACCGCTTCGACGTCAACCTCCACACCGCCGGCCTCATCGCCGCCACCTTCGGGCTGGCCAACATCG
TGTCCCGCCCAGGCGGCGGGCTCATGTCCGACTGGCTGTCCCAGCGCTACGGCATGCGCGGCAGGCTGTGGGGGCTGTGG
GTGATGCAGACCATCGGCGGCGTCCTCTGCGTCGTGCTGGGCATCGTCGACTACTCCTTCGGCGCCTCCGTGGCCGTCAT
GATACTCTTCTCCTTGTTCTGCCAGGCCGCGTGCGGCCTCACCTTCGGCATCGTGCCCTTCGTGTCGCGCAGGTCGCTGG
GGCTCATCTCCGGCATGACCGGCGGCGGCGGCAACGTCGGCGCCGTGCTCACGCAGGTCATCTTCTTCAGGGGCGGCAAG
TACAAGACGGAGACGGGGATCATGTACATGGGTATCATGATCCTCGCATGCACGCTGCCCGTCGCCTTCATCTACTTCCC
GCAGTGGGGCGGCATGCTCGCCGGGCCGCGGCCGGGGGCGACCGCCGACGACTACTACAACGGGGAGTGGACCGCGGAGG
AGCGGGACAAGGGGTACAACGCTGCCACCAAGCGTTTCGCGGAGAACAGCGTGCGCGAGGGCGGCCGGAGGGCGGCGTCA
GGCAGCGACTCAAGGCACACCGTCCCCGTCGACGGCTCGCCGGCGCCGGCCGACGTGTGATGAAGAACTCAAGCTCAACG
AAGTAATCGCGATCGATCCAGTATATACATAATACGAC----------------------------------------TA
TATACGTACGTACG------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------TACCATATTTTATCTGATGAGAAAT--------CAACAACAAAAACACACCCAGATATAGAAAGCT
GATATAAATAGTTCATCTGTCCGGGAAGCCGATAAACTGAACTCGAGCTCATATGAGCTCGGTGAACATTAAAATCCAAA
AAAAATGAAAAATTCAAAAAATTCTAAAATTG------TTGTGCCAACATTTGAGAAATGTTTAGAATGCCTACAAATTT
TCATCGCAAAATAAAATTCGCTGAAGTCGTGACAAAAAAAAAAGATGCTCAAAAAAATTATTTTTGGAGTATTGATTTTT
TTTTGCCATGACTTCCACGAATATCATTTCATGATGAAACTTTGCAAGCATTGAATTTTTTTGTCAAATGCTGCCACATA
AAAAAATTCAAAAGCTTTTAATTTTAATTTCATTTTTTTGATTTTATTGTTTTCTCGAGCTAGCTGAGAAGGGCACTTCC
GATCTGGCGGAGCTTACGCTACAGGAAAATCACACCTCGCCATGAGACTAGACGTAACCTGAGTGTAAAAACTCGCCCAC
TAGGTAAGCCCATTACTATCTAACACTACTGGAATTTTAAATAATGCCCACGGCCCGCAGCCGCCGGCATAGGCTTATAC
CGACGACTATTGTCGACGCATGGCCGTCGGTATTGATCTTGTTGGGAATGACCTGTCAGACCGTCAGTATACAAAAGGCG
TCGGCATAGATCCCTATGTTGACGGCCTTACTCGTGCCGTCGACATGGAACCACCGTCGGCAAAAGAGAAGACAACACGA
CACATAAGGCCATAGTGGACATGTGTCGACGCCCGGGAGCAACCACATAGCAGTACACTGGTACAGCGACGTCCTAAACA
AACGGTTTAAAACCCCTTTCCGCGACGGCATTTGGAACCGTCGCCAAGTGAGTGTGTGCGATAGGGTGTCCTTC
>chr7D_1
CGTAGTCTAATGGTGCACTGGGCTTGTA---TTTTTTTTAGAAAACACACAAACTTATATACTCACTCCGTCCCAAAATA
GGTGTTTGAAGCTTAGCACAACTTTGTACTAGAGTTAGTATAAAGTTGAGACACTTATTTTGGGACGGAGGGAGTACTAT
ATAAACTTATTAAAACAACACA-G-TTTTTTTTAAAGCATGAACACGTTGATATACTACATAAATAGTTTGTTAAAAATG
TGAAATTTTAAAATTATATGAGAATT-TGTTTAAATATATGGACATTTATAAAATTACTTTTATTTTTTATTAAAATGCG
AACA-TTTTTTCAAATTATAAATTATATTCTTAATTTTTAATTTTATTATGTGTATTTCTGTTAAATTACTGCATAGGTA
TTTTATGAAATGATATGAACTTTTTAACGTAATTTGTTTTAAATATATGTATATTTTTTGTAACATGATAATAATTTAAG
TAATTTTTAGAAAAATTAAATGAAAAAGAACAAACCCGCTGAAAACTGAGCCACACTGTGGTCCATTTTAGCCACACGGG
CTCGTTATGTTAT-------------------------------------------------------------------
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--------------------------------------------------------------------------
>chr4D_1
CGTAGTCTAATGGCGCACTGGGCTTGTA---TTTTTTTTAGAAAACACACAAACTTATATACTCACTCCGTCCCAAAATA
GGTGTTTGAAGCTTAGCACAACTTTGTACTAGAGTTAGTATAAAGTTGAGACACTTATTTTGGGACGGAGGGAGTACTAT
ATAAAATTATTAAAACAACACAG---TTTTTTTAAAGCATGAACACGTTGATATACTACATAAATAGTTTGTTAAAAGTG
TGAAATTTTAAAATTATATGAGAATT-TGTTTAAATATATGGAAATTTATAAAATTACATTTATTTTTTATTAAAATGCG
AACA-TTTTTTCAAATTATAAATTATATTCTTAATTTTTAATTTTATTATGTGTATTTCTGTTAAATTACTGCATAGGTA
TTTTATGAAATGATATGAACTTTTTAACGTAATTTGTTTTAAATATATGTATATTTTTTGTAACATGATAATAATTTAAG
TAATTTTTAGAAAAATAAAATGAAAAAGAACAAACCCGCTGAAAACTGAGCCGCACTGTGGTCCATTTTAGCCACACGGG
CTCGTTATGTTAT-------------------------------------------------------------------
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--------------------------------------------------------------------------
>chr2D_1
CGTAGTCTAATGGCGCACTGGGCTTGTA---TTTTTTT-AGAAAACACACAAACTTATATACTCGCTCCATCCCAAAATA
GGTGTTTGAAGCTTAGCATAACTTTGTACTAGAGTTAGTATAAAGTTCAGACACTTATTTTGGGACGGAGGGAGTACTAT
ATAAACTTATTAAAACAACATA-G-TTTTTTTTAAAGCATGAACACGTTGATATACTACATAAATAGTTTGTTAAAAATG
TGAAATTTTAAAATTATGTGAGAATT-TTTTTAAATATATGAACATTTATAAAATTACTTTTATTTTTTATTAAAATGCG
AACA-TTTTTTCAAATTATAAATTATATTCTTAATTTTTTATTTTATTATGTGTATTTCTGTTAAATTACTGCATAGGTA
TTTTATGAAATGATATGAACTTTTTAACGTAATTTGTTTTAAATATATGTATATTTTCTGTAACGTGATAATAATTTAAG
TAATTTTTAGAAAAATGAAATGAAAAAGAACAAACCCGTTGAAAACTGAGCCACACTGTGGTCCATTTTAGCCACACGGG
CTCGTTATGTTAT-------------------------------------------------------------------
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>chr2D_1
CGTAGTCTAATGGCGCACTGGGCTTGTA---TTTTTTTTAGATAA-------------------ACTCCGTCCCAAAATA
GGTGTTTGAAGCTTAGCACAACTTTGTACTAGAGTTAGTATAAAGTTGAGACACTTATTTTGGGACGGAGGGAGTACTAT
ATAAACTTATTAAAACAACA---G-TTTTTTTTAAAGCATGAACACTTTGATATACTACATAAATAGTTTGTTAAAAATG
TGAAATTTTAAAATTATGTGAGAATT-TGTTTAAATATATGAACATTTATAAAATTACTTTTATTTTTTATTAAAATGCA
AACA-TTTTTTCAAATTATAAATTATATTCTTAATTTTTAATTTTATTATGTGTATTTCTGTTAAATTACTGCATCGGTA
TTTTATGAAATGATATGAACTTTTTAACGTAATTTGTTTTAAATATATGTATATTTTTTGTAACGTGATAATAATTTAAG
TAATTTTTAGAAAAATGAAATGAAAAAGAACAAACCCGTTGAAAACTGAGCCACACTGTGGTCCATTTTAGCCACACGGG
CTCGTTAT------------------------------------------------------------------------
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--------------------------------------------------------------------------
>chr7B_1
CGTAGTCTAATGGCGCACTGGGCTTGTA---TTTTTTT-AGAAAACACACAAACTTATATACTCACTCCGTCTCAAAATA
GGTGTTTGAAGCTTAGCACAACTTTATACTAGAGTTAGTATAAAGTTGAGACACTTATTTTGGGACGGAGGGAGTACTAT
ATAAACTTATTAAAACAACACAA---TTTTTTTAAAGCATGAACACGTTGATATACTACATAAATAGTTTGTTAAAAATG
TGAAATTTTAAAATTATATGAGAATTTTGTTTAAATATATGAACATTTATAAAATTACTTTTATTTTTTATTAAAATGCG
AACA-TTCTTTCAAATTATAAATTATATTCTTAATTTTTAATTTTATTATGTGTATTTCTGTTAAATTACTGCATAGGTA
TTTTATGAAATGATATGAAA-TTTTAACGTAATTTGTTTTAAATATATGTATATTTTTTGTAACGTGATAATAATTTAAA
TAATTCTTAGAAAAATGTAATGAAAAAGAACAAACCCGTTGAAAACTGAGCCACAC------------------------
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--------------------------------------------------------------------------
>chr7D_3
--TAGTCTAATGGCGCACTGGGCTTGTATTTTTTTTTT-AGAAAACACACAAACTTATATACTCACTCCGTCCCAAAATA
GGTGTTTGAAGCTTAGCACAACTTTGTACTAGAGTTAGTATAAAGTTGAGACACTTATTTTGGGACGGAGGGAGTACTAT
ATAAACTTATTAAAACAACACAGG-TTTTTTTTAAAGCATGAACACGTTGATATACTACAGAAATAGTTTGTTAAAAATG
TGAAATTTTAAAATTATATGAGAATT-TGTTTAAATATATGGACATTTATAAAATTACTTTTATTTTTTATTAAAATGTG
AACA-TTTTTTCAAATTATAAATTATATTCTTAATTTTTAATTTTATTATGTGTATTTCTGTTAAATTATTGCATAGGTA
TTTTATGAAATGATATGAACTTTTTAACGTAATTTGTTTGAAATATATGTATATTTTTTGTAACATGATAATAATTTAAG
TATTTTTTAGAAAAATGAAATGAAAAAGAACAAACCCGCTGAAAACTGAGCCACACTGTGGTCCATTTTAGCCATACGGG
CTCGTTATGTTAT-------------------------------------------------------------------
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--------------------------------------------------------------------------
>chr5B_7
------CTAATGGCGCACTGGGCTTGTAT--TTTTTTT-AGAAAACACACAAACTTATATACTCACTCCGTCCCAAAATA
AGTATGTGAAGCTTAGCACAACTTTGTACTAGAGTTAGTATAAAGTTGAGACACTTATTTTGGGACAGAGGAAGTACTAT
ATAAACTTATTAAA-CAACATA-GTTTTTTGTTAAAGCATGAACACGTTGATATACTACATAAATAATTTGTTAAAAATG
TGAAATTTTAAAATTATATGAGAATT-TATTTAAATATATGAACGTTTCTAAAATTACTTTATTTTTTTATTAAAATGCG
AACATTTTTT--AAACTATAAATTATATTCTTAATTTGTAATTTTATTATGTGTATTTCTGTTAAATTACTGCATAGGTA
TTTTATGAAATGATATGAACTTTTTAACGTAATTTGTTTTAAATATATTTATATTTTTTGTAACATGATAATAATTTAAG
TAATTTTTAGAATAATGAAATGAAAAAGAACAAACCCGTTGAAAACTGAGCCACATTGTGGTTCATTTTAGCCACACGGG
CTCGTTA-------------------------------------------------------------------------
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>chr2D_61
----------------------------------------------------------------ACTCCGTCCCAAAATA
GGTGTTTGAAGCTTAGCACAACTTTGTACTAGAGTTAGTATAAAGTTGAGACACTTATTTTGGGACGGAGGGAGTACTAT
ATAAACTTATTAAAACAA--TA-G-TTTTTTTCAAAGCATGAACACGTTGATATACTACATAAATAGTTTGTTAAAAATG
TGAAATTTTAAAATTATGTGAGAATT-TATTTAAATATATGAACATTTATAAAATTACTTTTATTTTTTATTAAAATGCG
AACATTTTTTTCAAATTATAAATTATATTCTTAATTTTTAACTTTATTATGTGTATTTCTGTTAAATTACTGCATCGGTA
TTTTATGAAATGATATGAACTTTTTAACGCAATTTGTTTTAAATATATGTATATTTTTTGTAACGTGATAATAATTTAAG
TAATTTTTAGAAAAATGAAATGAAAAAGAACAAACCCGTTGAAAACTGAGCCACACTGTGGTCCATTTTAGCCACACGGG
CTCGTTATGTTAT-------------------------------------------------------------------
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>chrUn_754
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------------------------------------------TATTATTATCGTATGAGTATCGGCGTCGGCTTCGGCGA
GCCGCGATGGCGGCCTTCCACGGACCCCGTTGGATCACCGCCGCAATGTTTATTCATGGGACCCTTGCCCTCTCGTCGTT
CTCAACTCCGGTCCAGCCGCACTATACATAGCCGCCGCACCGATGAGGCTCTCCGTACTACCACACCGGCACGTTCCAAG
TTGCCAACACCGGCCGCTCAGGTAGGTACTTGCATTGCACTGGTAGCAGCTAGCTAGCTAGGGCGATGGAGGGAGCGGCG
GCCAT---------GGAGATGGAGGTGCAGGCGGCGCCCAAGGCCAAGTTCAGGATTCCGGTGGACGACGACAGCAAGGC
CACCGAGTTCTGGCTCTTCTCCTTCGCGAGGCCGCACATGAGCGCCTTCCACCTCTCGTGGTTCTCCTTCTTCTGCTGCT
TCGTCTCCACCTTCGCGGCGCCGCCGCTCATGCCGCTCATCCGGGACAACCTCGGCCTCACCGCCAAGGACATCGGCAAC
GCCGGGGTCGCGTCCGTGTCGGGCGCCGTCTTCGCGCGCCTCGCCATGGGCACGGCCTGCGACCTGGTCGGGCCCC----
----------------------------------GCCTGGCGTCGGCGGCCATCATACTGCTCACCACCCCCGCCGTCTA
CTGCACCTCCATCATCAATTCGGCCTCCTCCTTCCTGCTCGCGCGCTTCTTCACCGGCTTCTCGCTCGCCTCCTTCGTGT
CCACGCAGTTCTGGATGAGCTCCATGTTCTCGGCGCCCAAGGTGGGGCTGGCCAACGGCGTCGCGGGCGGCTGGGGCAAC
CTCGGCGGGGGCGCCGTGCAGCTCCTCATGCCCTTCGTCTTTGAGGCCGTCCGCAAGATGGGCAGCACCAAGTTCGTGGC
GTGGCGCGTGGCCTTCTTCATCCCGGGCATCATGCAGACGGTGTCGGCCATCGCGGTGCTGGCGCTCGGGCAGGACATGC
CGGACGGCAACTACCGGAAGCTGCACAAGAGCGGGGAGATGCACAAGGACAGCTTCGGCAACGTGCTGCGCCACGCGGTC
ACCAACTACCGCGCCTGGATCCTGGCGCTCACCTACGGCTACAGCTTCGGCGTGGAGCTCGCCGTGGACAACATCGTCGC
CGAGTACTTCTACGACCGCTTCGACGTCAACCTCAAAACCGCCGGCCTCATCGCCGCCACCTTCGGGCTGGCCAACATCG
TGTCCCGCCCAGGCGGCGGGCTCATGTCCGACTGGCTGTCCCAGCGCTACGGCATGCGCGGCAGGCTGTGGGGGTTGTGG
GTGATGCAGACCATTGGCGGCGTCCTCTGCGTCGTGCTGGGCATCGTCGACTACTCCTTCGGCGCCTCCGTGGCCGTCAT
GATACTCTTCTCCCTCTTCTGCCAGGCCGCGTGCGGCCTCACCTTTGGCATCGTGCCCTTCGTGTCGCGCAGGTCGCTGG
GGCTCATCTCCGGCATGACCGGCGGCGGCGGCAACGTGGGCGCCGTGCTCACGCAGGTCATCTTCTTCAGGGGCGGCAAG
TACAAGACGGAGACGGGGATCATGTACATGGGTATCATGATCCTCGCATGCACGCTGCCCGTCGCCTTCATCTACTTCCC
GCAGTGGGGCGGCATGCTCGCCGGGCCAAGGAAGGGGGCCACCGCCGACGACTACTACAACGGGGAGTGGACCGCCGAGG
AGCGGGAGAAGGGGTACAACGCTGCCACCAAGCGTTTCGCCGAGAACAGCGTGCGCGAGGGCGGCCGGAGGGCGGCGTCG
GGCAGCCGCTCAAGGCACACCGTCCCCGTCGACAGCTCGCCGGCGCCGGCCGACGTGTAAAGTA---------CTCCATA
AATTAATCGCGACCGATCCATCCATCCATCGAGTGGAATACATAATGAGTGATCGAGCATATTACCTACCTACGTACGTA
TATACGTACCTACCTACTCTACGTTCGAACGATCCATCCGTCCGGCCGGCCGTATTGCTGTGTTTATGGTCGTGAATATA
TGATGTACTGCCGTTCTTCTTTTTCGTGGGGCACTCGTGTCACTGCTACGGCAGACAAACTTATCCTCCTGTTTTTCGTT
AAAAAAAATGGATCTACCATATTTTATGTGATGAGATGAGAAATCAACAACAACAAAATCACAAGCAAATATAGAAAGCT
GATATAAATAGTTCATCTGGCCCGGAAGCCGATAAACTGAGCTCGACCTCATATGGGCTCGGTGAACAGTGAGATCCAAA
ATATATAAGAAAAAAAACGGAAAACTCTGATTTTTTTTTTGTGGCAGCATTTGACAAGTGTTTAAAATGCGTGCAAAATT
TCATCACAAAATAGCATTCATGAAAGTCATGACAAAAAAA----------------------------------------
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>chr3A_983
GGTAG---------------------------------------------------------------------------
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-------------------------------------------------CTAGCTAGCTGGTGAGATGGAGGGGGAGTCG
AAG------CCGGCGGCGATGGGGGTGCAGGCGGCGCCCAAGGGCAAGTTCAGGATGCCGGTGGACTCGGACAACAAGGC
CACCGAGTTCTGGCTCTTCTCGTTCGCGAGGCCGCACATGAGCGCCTTCCACCTCTCGTGGTTCTCCTTCTTCTGCTGCT
TCGTCTCCACCTTCGCGGCGCCGCCGCTCCTGCCGCTCATCCGGGACAACCTTGGCCTCACGGGCAAGGACATCGGCAAC
GCCGGGATCGCGTCCGTGTCCGGCGCCGTGTTCGCGCGTCTCGCCATGGGCACGGCCTGCGACCTGGTCGGGCCCC----
----------------------------------GCCTGGCGTCCGCGGCCATCATACTGCTCACCACCCCCGCGGTGTA
CTGCTCGGCCATCATCGACTCCGCGTCGTCCTTCCTGCTCGTGCGCTTCTTCACGGGCTTCTCGCTCGCCTCCTTCGTGT
CCACGCAGTTCTGGATGAGCTCCATGTTCTCGTCGCCCAAGGTGGGGCTGGCCAACGGCGTCGCGGGAGGCTGGGGCAAC
CTCGGCGGGGGCGCCGTGCAGTTCATCATGCCGCTCGTGTACGAGATCGTCCGCAAGATCGGCAGCACGGACTTCGTCGC
GTGGCGCATCGCCTTCTTCATCCCGGGCATCATGCAGACGTTCTCGGCCATCGCCGTGCTGGCGTTCGGGCAGGACATGC
CGGACGGCAACTACCGTAAGCTGCACAAGAGCGGGGAGATGCACAAGGACAGCTTCGGCAACGTGCTGCGCCACGCGGTC
ACCAACTACCGCGCCTGGATCCTGGCGCTCACCTACGGCTACTGCTTCGGCGTCGAGCTCGCCGTCGACAACATCGTGGC
GCAGTACTTCTACGACCGCTTCGACGTGAACCTCCACACGGCCGGGCTCATCGCCGCCAGCTTCGGGATGGCCAACATCA
TCTCCCGCCCCGGCGGCGGGCTCATGTCCGACTGGCTGTCCGACCGGTTCGGCATGCGCGGCAGGCTGTGGGGGCTGTGG
GTCGTGCAGACCATCGGCGGCGTCCTCTGCGTGGTGCTCGGCGTCGTCGACTACTCGTTCGGCGCGTCGGTGGCCGTCAT
GATACTCTTCTCCTTCTTCGTGCAGGCCGCGTGCGGGCTCACGTTCGGCATCGTGCCGTTCGTGTCGCGGCGGTCGCTGG
GGCTCATCTCCGGGATGACCGGCGGGGGCGGCAACGTGGGGGCCGTGCTGACGCAGGTCATCTTCTTCCGCGGCACCAAG
TACAAGACGGAGACGGGGATCATGTACATGGGGCTGATGATCCTGGCGTGCACGCTGCCCATCACGCTCATCTACTTCCC
GCAGTGGGGCGGCATGTTCGCCGGGCCGCGGAAGGGGGCGACGGCGGAGGAGTACTACAGCCAGGAGTGGACCGAGGAGG
AGCGGGCCAAGGGGTACAGCGCCGCGACCGAGCGTTTCGCGGAGAACAGCGTGCGTGAGGGCGGGCGGAGGGCGGCGTCG
GGCAGCCAGTCAAGGCACACCGTCCCCGTCGACGGGTCGCCGGC------------------------------------
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>chr3B_1025
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---------CCGGCGGCGATGGGGGTGCAGGCGGCGCCCAAGGGCAAGTTCAGGATCCCGGTGGACTCCGACAACAAGGC
CACCGAGTTCTGGCTCTTCTCGTTCGCGAGGCCGCACATGAGCGCTTTCCACCTCTCGTGGTTCTCCTTCTTCTGCTGCT
TCGTCTCCACCTTCGCCGCGCCGCCGCTCCTGCCGCTCATCCGGGACAACCTCGGCCTCACGGGCAAGGACATCGGCAAC
GCCGGGATCGCGTCCGTGTCGGGAGCCGTGTTCGCGCGTCTCGCCATGGGCACGGCCTGCGACCTGGTCGGGCCCC----
----------------------------------GCCTGGCGTCCGCGGCCATCATACTGCTCACCACCCCCGCGGTGTA
CTGCTCCGCCATCATCGACTCCGCGTCGTCGTTCCTGCTCGTGCGCTTCTTCACGGGCTTCTCGCTCGCCTCCTTCGTGT
CCACGCAGTTCTGGATGAGCTCCATGTTCTCGTCGCCCAAGGTGGGGCTGGCCAACGGCGTCGCCGGCGGCTGGGGCAAC
CTCGGCGGGGGCGCCGTGCAGTTCATCATGCCGCTCGTGTTCGAGGTCGTCCGCAAGATCGGCAGCACGGACTTCGTCGC
GTGGCGCGTCGCCTTCTTCATCCCGGGCATCATGCAGACGTTCTCGGCCATCGCCGTGCTGGCGTTCGGGCAGGACATGC
CGGACGGCAACTACCGTAAGCTGCACAAGAGCGGGGAGATGCACAAGGACAGCTTCGGCAACGTGCTGCGCCACGCGGTC
ACCAACTACCGGGCCTGGATCCTGGCGCTCACCTACGGCTACTGCTTCGGCGTCGAGCTCGCCGTCGACAACATCGTGGC
GCAGTACTTCTACGACCGCTTCGACGTGAACCTCCACACGGCCGGACTCATCGCCGCCAGCTTCGGGATGGCCAACATCA
TCTCCCGCCCCGGCGGCGGGCTCATGTCCGACTGGCTCTCCGACCGGTTCGGCATGCGCGGCAGGCTGTGGGGACTGTGG
ATCGTGCAGACCATCGGCGGCATCCTCTGCGTGGTGCTCGGCGTCGTCGACTACTCGTTCGGCGCGTCGGTGGCCGTCAT
GATACTCTTCTCCTTCTTCGTGCAGGCCGCGTGCGGGCTCACCTTCGGCATCGTGCCGTTCGTCTCGCGGCGGTCGCTGG
GGCTCATCTCCGGAATGACCGGCGGGGGCGGCAACGTGGGGGCCGTGCTGACGCAGGTCATCTTCTTCCGCGGCACCACG
TACAAGACGGAGACGGGGATCATGTACATGGGGCTGATGATCCTGGCGTGCACGCTGCCCATCACGCTCATCTACTTCCC
GCAGTGGGGCGGCATGTTCGCCGGGCCGCGGAAGGGGGCGACGGCGGAGGAGTACTACAGCCAGGAGTGGACCGAGGAGG
AGCGGGCCAAGGGGTACAGCGCCGCGACCGAGCGTTTCGCGGAGAACAGCGTGCGCGAGGGCGGTCGGAGGGCGGCGTCG
GGCAGCCAGTCAAGGCACACCGTCCCCGTCGACGGGTCGCCGGC------------------------------------
--------------------------------------------------------------------------------
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>chr3D_1025
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------CCGGCGGCGATGGGGGTGCAGGCGGCGTCCAAGGGCAAGTTCAGGATCCCGGTGGACTCCGACAACAAGGC
CACCGAGTTCTGGCTCTTCTCGTTCGCGAGGCCGCACATGAGCGCCTTCCACCTCTCGTGGTTCTCCTTCTTCTGCTGCT
TCGTCTCCACCTTCGCCGCGCCGCCGCTCCTGCCGCTCATCCGGGACAACCTCGGCCTCACCGGCAAGGACATCGGCAAC
GCCGGGATCGCGTCCGTGTCGGGCGCCGTGTTCGCGCGTCTCGCCATGGGCACGGCCTGCGACCTGGTCGGGCCCC----
----------------------------------GCCTGGCGTCCGCGGCCATCATACTGCTCACCACCCCCGCGGTGTA
CTGCTCGGCCATCATCGACTCTGCGTCGTCGTTCCTGCTCGTGCGCTTCTTCACGGGCTTCTCGCTCGCCTCCTTCGTGT
CCACGCAGTTCTGGATGAGCTCCATGTTCTCGTCGCCCAAGGTGGGGCTGGCCAACGGCGTCGCCGGCGGATGGGGCAAC
CTCGGCGGGGGCGCCGTGCAGTTCATCATGCCGCTCGTGTTCGAGGTCGTCCGCAAGATCGGCAGCACGGACTTCGTCGC
GTGGCGCGTCGCCTTCTTCATCCCGGGCATCATGCAGACGTTCTCGGCCATCGCCGTGCTGGCGTTCGGGCAGGACATGC
CGGACGGCAACTACCGTAAGCTGCACAAGAGCGGGGAGATGCACAAGGACAGCTTCGGCAACGTGCTGCGCCACGCGGTC
ACCAACTACCGCGCCTGGATCCTGGCGCTCACCTACGGCTACTGCTTCGGCGTCGAGCTCGCCGTCGACAACATCGTGGC
GCAGTACTTCTACGACCGCTTCGACGTGAACCTCCACACGGCCGGACTCATCGCCGCCAGCTTCGGGATGGCCAACATCA
TCTCCCGCCCCGGCGGCGGGCTCATGTCCGACTGGCTCTCCGACCGGTTCGGCATGCGCGGCAGGCTGTGGGGGCTGTGG
ATCGTGCAGACCATCGGCGGCATCCTCTGCGTGGTGCTCGGCGTCGTCGACTACTCGTTCGGCGCGTCGGTGGCCGTCAT
GATACTCTTCTCCTTCTTCGTGCAGGCCGCGTGCGGGCTCACCTTCGGCATCGTGCCGTTCGTCTCGCGGCGGTCGCTGG
GGCTCATCTCCGGAATGACCGGCGGGGGCGGCAACGTGGGGGCCGTGCTGACGCAGGTCATCTTCTTCCGCGGCACCACG
TACAAGACGGAGACGGGGATCATGTACATGGGGCTGATGATCCTGGCGTGCACGCTGCCCATCACGCTCATCTACTTCCC
GCAGTGGGGCGGCATGTTCGCCGGGCCGCGGAAGGGGGCGACGGCGGAGGAGTACTACAGCCAGGAGTGGACCGAGGAGG
AGCGGGCCAAGGGGTACAGCGCCGCGACCGAGCGTTTCGCGGAGAACAGCGTGCGCGAGGGCGGGCGGAGGGCGACGTCG
GGCAGCCAGTCAAGGCACACCGTCCCCGTCGACGGGTCGCCGGC------------------------------------
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>chr7D_1218
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------GGGACAACCTCGGCCTCACGGCCAAGGACATCGGCAAC
GCCGGGGTCGCTTCCGTCTCGGGTGCCGTCTTCGCGCGTCTCGCCATGGGCACGGCTTGCGACCTGGTCGGGCCCCGCCT
GGCGTCGGCGGCCATCATACTGCTCACCACCCCCGCCTGGCGTCGGCGGCCATCATACTGCTCACCACCCCCGCCGTCTA
CTGCACGTCCATCATCAACTCGGCGTCCTCCTTCCTGCTCGTGCGCTTCTTCACCGGCTTCTCGCTCGCCTCCTTCGTGT
CCACGCAGTTCTGGATGAGCTCCATGTTCTCGACGCCCAAGGTGGGTCTGGCCAACGGCGACGCGGGCGGCTGGGGCAAC
CTCGGCGGCGGCGCCGTGCAGCTCCTCATGCCCGTCGTCTTTGAGGCCGTCCGCAAGATCGGCAGCACCAAGTTCGTGGC
GTGGCGCGTGGCCTTCTTCATCCCGGGCATCATGCAGACGGTGTCGGCCATCTTGGTGCTGGCGCTTGGGCAGGACATGC
CGGACGGCAACTACCGCATGATGC--------------------------------------------------------
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--------------------------------------------------------------------------
>SNPs
-------------------------------S------------------------------------------------
-------S------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------S-------------------------------
-----------------------------------------------------------S--------------------
--------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------------
--------------------S-S---------------------------------------------------------
SS--------------S---------S---S-------------------S-----------------------S---S-
------------SS-SS---------S------------S---------------------------------------S
---SSSSSS-----------------S-------------------------S---------------S-----------
-------------------------S-----S------------------------------------------------
----S--------S------------------------------------------------------------------
-----------------------------------------------------------------------S--------
--------------------------------------------------------------------------------
---------------------------------------------------------------------S----------
--------------------------------------------------------------------------------
-----------------------------------------------------------S--------------------
--------------------------------------------------------------------------------
-----------------------------SS-------------------------------------------------
-----------------------------------------------------------S--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------S----------------------------------------------------------------
-------------------------------------S------------------------------------------
--------------------------------------------------------------------------------
-------------------------------SS-----------------------------------------------
-------------------------------------------------------------------------------S
------S---------------------------------------------------S-S-S-SSSSSSSSS---S-SS
--S---------S-------SSSSSSSSSSS-SSS--S------------------------------------------
---------S---S------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------S--------SSS-------------------S----SS--S------------
-------------------S--S-----------------S-----S--------S------------S-S-S-------
-S-S--S-S---SSS--SSS-SSSSSSSSS-S-----------S--S-------S--S------S-----S-S----S--
-----S-------SS----SSSS-----S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_675
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------TATGCACGTCCATGCCAAGT---------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------
>reverse_2567
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------GACTCAAGGCACACCGTCC-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------
>forward_679
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------CACGTCCATGCCAAGTTGTG-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------
>reverse_2621
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------TGAAGAACTCAAGCTCAACG
A-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------
