>input_sequence_48369
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----------------------------------------ATGGCGACGCTGACTGTTGAGGACGTGCTGCGGGTGAATG
GCAGTCGCCGGTTCGCCGTCGCGCTGGCCGCCGCCTCCCCCTTCGGCTCTCTCGCCGACGCGCTACTCGCCGCCCGCCGC
ATCTGGCGCAACGAGGTACGTATGCCCAGGCATCCCCTCTGCACGTATCAATTCCTCTCACCTTCCCATACGAAGCAAAC
TGATCCTTCCATTCATGCGATCGGGAACGAACGAACAAATCAAGGTGGACGTGCCTGGATGGCTGGAGGCCTTCGCCGCC
AACCCGCCCCTCGGCACCACCTCCCTCTCCATCTCCAAGTCAGTTTCCTTACCTCTTCGTCTGCCATTTCTTCGCTTCTT
GCTGTCACTCATGGTCAGTCAGTCACTGCAGATGGAGCAAGGAGGAGCAATCAGTTGCGCGTTCCACGGCGACTCATTCG
ACTGCACAGGTCGCCGCGTTCCTTCTTTAAACCTGTTATGTGATTCATCTGACCTGATCGATTTGTGGACTCAATTAGCT
TTGCCTTCTTCAAACTGTTTGTTGCAGGACTTGTCCGAATGGAATGCCAAATACAGGGACAAGTTTGGGTTTGTCTTTCT
GATATGCGCAACTGGGAGGACCGCCCCCGAGGTCTTAGCTGAGCTCAAGGTCTGCATATATCCAAACTAAATTCCAGTTA
TGTATGATTTTTGTAATAGTTTTTTCAATTACCATCTCCTGCGCCGGCTATTTTTACGCTAAGATTTATAGGCACGTTTT
AGTTTTATGTTTCTTCCTGCATTTAATTGGTTTAGTTTTTTGGGATTTTCATTTCAGCTTTTCTTTATGTTTCTTTATGT
CATGCATAACTATAGTTGCCCGCACACAGGGGTGCAACTATATAGTTGCTAGTTCATGGACCATGCGCAACTGCAGTTGC
ATGCTCCATCAATCATGCACATATC---------TTTTTAAAAGGAAATCCAATCAAAAACGTGGGTTAAGGAAAAGCAA
AAGTGAAAGAAGACAAAAATGAAAATGCAACAACAACTGTTATCATGCCTGCCTGTTCGGGTCATCGAATCTCAATAATT
CATGGAACAGTAATTAGATTTTTGTTTGCTCTACAGTCTGTTATTACTTAGGTCATGTGGTATCGTGATCGTGATCCGTG
GAATACCGCGGGTCATGTCCTAATAATGGAACAGTGGTTGTTTTCTCAATGACAATAGTGATCC-------TTTTTGCAA
GTTTTGTGTCTAAACTAAATTCTCTACCTTTGGATTTTGATATCACTGGGGGTATTTAATATC--GAGTTCAGCCCTGAT
ATGGCGCATGGCGCTACA--------------AAAATCATATTACTAGAAAGCTTTGATACGACGATTCCCTTTCTATCT
ATGTAAATAATTGTTCTCAAGTGTGTCTTATCATCCTGCTTCTCTTTCCAGAGGCGTTATGCAAATAGGCTGATTGTTGA
ACTTGAGATTGCGGCAGCGGAAGAATTGAAGATAACTGAACTGCGTCTTGCAAAACTTTTCTCGCCAGAGACTGCAGCTC
C-CCGACTTCAGTTATTAGCCAACCAGTAA--------------------------------------------------
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>chr1A_1_TraesCS1A01G421400
CTGGGAGGGACACGGCGAAGGGCGCCGACTGATAGGCTGGGTTGGGCGCAGGGTAGGGGAGCAATTTGGGAGGCATGATG
TGAGCTGATTTGTCTCGTCCACGTGGTGGATATGTCCGCACCGACTCATATCCTCCTAGATTCGGGCTGGGTTGCTATCC
GGATTGCGCAGACATGTGTGAATAATTTGAGGAGGCCCGTTGGACTTGTGTTTTTGTTCGGATTGTGCGACCATGTCCAG
ACCGTCCGCCCGACGGAAAAGATTTGGGCTGTCCTTTGGAGATGCTCTAATTGTGGGCATCAAACTCTCATGGTATAATA
AGTGGGAAAGCACGTAGATTAGCTAGGATGCATCCCTTCTTAAAAAGAAAAAAAGCTAGGATGGCATCCCTTCTAAAAAA
GAAAAAAAGCTAGGATGGCATCCTGCATGGATGCTGGACGATATATATGGCTAGACACTCCTCCAGCTGATTTACGTACC
GCTGTAAACTTTGATATTATGTAATATAAAGGTAGCTTTTTTTTTGCGGAAAGCAATAAAGGTAGCGTTGGTTCTTCTGA
AGAAAAAAATCCCACAGTAATTATGTACTCTCTCCGTCTCACAATGTAAGATGTTTTTGTAACCTAATATATGCAACAAC
GAATAACTTTGGACTGTCCCCTCAAAAATAAATAATTTTACACTGAAAATAAACAAGCATTCAGTCGTGTTCTGTTTTGT
TTTCACGTGTTTTATTGTTTGGTAAACTACTCTTTTCTCGTGCGCCCATTTTTCCTATTCCACTCCGGTTGCTCCTAATT
TGTCTTTCCCATAGTACAAATCATGAGGTCCCGCACACCCTCGATGGTCGGCAGCAGCTGCCCCTGAGGCAGACACGCAT
TTTCCTCGTGGCAGGGCCCTATAACTAGCCCCCAAAGGTTTGCTGCTGGAGCAAGCACGCATTCTCTCGTGCACTGGCAG
ATGCTCGTCTTGCTCACTGGAGCAGTCACCAGTGAGAGAGATGGCGACGCTGACTGTTGAGGACGTGCTGCGGGTGAATG
GCAGTCGCCGGTTCGCCGTCGCGCTGGCCGCCGCCTCCCCCTTCGGCTCTCTCGCCGACGCGCTACTCGCCGCCCGCCGC
ATCTGGCGCAACGAGGTACGTATGCCCAGGCATCCCCTCTGCACGTATCAATTCCTCTCACCTTCCCATACGAAGCAAAC
TGATCCTTCCATTCATGCGATCGGGAACGAACGAACAAATCAAGGTGGACGTGCCTGGATGGCTGGAGGCCTTCGCCGCC
AACCCGCCCCTCGGCACCACCTCCCTCTCCATCTCCAAGTCAGTTTCCTTACCTCTTCGTCTGCCATTTCTTCGCTTCTT
GCTGTCACTCATGGTCAGTCAGTCACTGCAGATGGAGCAAGGAGGAGCAATCAGTTGCGCGTTCCACGGCGACTCATTCG
ACTGCACAGGTCGCCGCGTTCCTTCTTTAAACCTGTTATGTGATTCATCTGACCTGATCGATTTGTGGACTCAATTAGCT
TTGCCTTCTTCAAACTGTTTGTTGCAGGACTTGTCCGAATGGAATGCCAAATACAGGGACAAGTTTGGGTTTGTCTTTCT
GATATGCGCAACTGGGAGGACCGCCCCCGAGGTCTTAGCTGAGCTCAAGGTCTGCATATATCCAAACTAAATTCCAGTTA
TGTATGATTTTTGTAATAGTTTTTTCAATTACCATCTCCTGCGCCGGCTATTTTTACGCTAAGATTTATAGGCACGTTTT
AGTTTTATGTTTCTTCCTGCATTTAATTGGTTTAGTTTTTTGGGATTTTCATTTCAGCTTTTCTTTATGTTTCTTTATGT
CATGCATAACTATAGTTGCCCGCACACAGGGGTGCAACTATATAGTTGCTAGTTCATGGACCATGCGCAACTGCAGTTGC
ATGCTCCATCAATCATGCACATATC---------TTTTTAAAAGGAAATCCAATCAAAAACGTGGGTTAAGGAAAAGCAA
AAGTGAAAGAAGACAAAAATGAAAATGCAACAACAACTGTTATCATGCCTGCCTGTTCGGGTCATCGAATCTCAATAATT
CATGGAACAGTAATTAGATTTTTGTTTGCTCTACAGTCTGTTATTACTTAGGTCATGTGGTATCGTGATCGTGATCCGTG
GAATACCGCGGGTCATGTCCTAATAATGGAACAGTGGTTGTTTTCTCAATGACAATAGTGATCC-------TTTTTGCAA
GTTTTGTGTCTAAACTAAATTCTCTACCTTTGGATTTTGATATCACTGGGGGTATTTAATATC--GAGTTCAGCCCTGAT
ATGGCGCATGGCGCTACA--------------AAAATCATATTACTAGAAAGCTTTGATACGACGATTCCCTTTCTATCT
ATGTAAATAATTGTTCTCAAGTGTGTCTTATCATCCTGCTTCTCTTTCCAGAGGCGTTATGCAAATAGGCTGATTGTTGA
ACTTGAGATTGCGGCAGCGGAAGAATTGAAGATAACTGAACTGCGTCTTGCAAAACTTTTCTCGCCAGAGACTGCAGCTC
C-CCGACTTCAGTTATTAGCCAACCAGTAAAAACATCAGGTATTGGATAAACTATATATGTTGACACATTTTCCACTACT
AGTTTGAG--CCTTTTTTCCTCTACTAGTTTGAGCCTTTTTTCCCTGATGTGTCATATAATCGAAGCTTCAGAGATATTG
GTCTCACATGCT---CTTGTTTTCTTGAAAATGATAGCCATCGAAACTGTTCTC--CCCCTCCACTCCTCAAATTCCCTA
ACTCTACTCCATGCTATAGTATTTCTAGAGCTCCATACGCCAAATCCTGTTTACATAACATGTTCAGCAACTAGCTCAAC
TGCAGTCCATACATTGGTGTGCCAACATCCTGATTACACAATAAGCCCAGCCTGACTCACTTGGTGTGCCAAAGAACAGT
TAACAAAAATGCAGTGCAGACAAAACTTATTACAGAAATAATACTGGAACAAAATAAGATTTCACACATAACC-AAATTT
ATCACATGTTCAAATATCACACGCAAGAAAAA-TTCTCACAGTTTCGCCACCAAATGGAATACTGATAGCACACACAATC
AAATTTATCATAGTATCAAATATTTCACACAAGAAAATTTCTCACCTCG--------------------GTGAAAAATGT
ATCTTTTGAA--TTTGACACTTCTTCGTCACAATGAGGCATCGACTGCATTGCTTCATATTCTCTAGTGCCTTTAGAAGA
CAGTTGCATAATGGACAATTGAGA-AACCAAGCCATGTATAGAGATCAGC-----CCCAATACGTTAAGCCAAGTTATTA
AAA-AAACAAAATTGTTGAAAAAATATTTTTCT-CTCTATTTTGACCAAGCCATGTAGCATTCAAATCATTGAGTAGATT
GTTTT-----------------AGTCAAAAGAACTGTAATATCAGCCGAAGAACTTGCTTGAAGGAAATAATTAAGCAAG
AATGCAGTGGCATTATCCAATTTAAACAACTACATGCACCTCACTTCACACATGTAGGTTACTGAATTAAATCAAATAGA
ATGGCACCAAATAAGTAATGAGCAAGTAGCATGTTTTGCCAGGAGT
>chr1B_1884
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-------------------------------------------AGTTGCTCGTTCGTGGACCGTGCGCAACTGCAGTTGC
ATGCTCCATCAATCGTGCGCAACTATCTTTACATTTTTGTAAATGAAATGCAATCAAAAAGTCTATTATTAGCCCATC--
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-------------------------------------------TTTCTTGTGTCATGTGGTATCCTGATCCA------TG
GAATACCACGGTTCAAGTACTAATAATGGAACAACGGCTGTTTTCTCAATGACAATAATGACCTTCCTCGGTTTTTACAA
GTTTTGTGTTGAAACAAAATTCTCTTCCTTTGGCTTTTGACATCATTGGGATTATTAAATATTTTGAGTTTAGCCCTGAT
CTGGCGCATTGCGCTCTCTATGATTTGATCACAAAATCATATTACTAGAAAGCTTTGATATCATGATTTCCTTTCTATCT
CTGTAAATAAATGTTCTCAATTGAGTCTTACTATTTTTTCTCTCTTTCTAGAGGCGTTATGCAAATAGGTTGATTGTTGA
GCTTGAGATTGCGGCAGAGGAAGAACTCAAGATAACTGAGTTGCGCCTTGCAAAGCTTTTCTCGTCAGATTCTGCTGCTC
CACCGACTTCAGTTTTTGGCCAACCGGATAAAACATCAGGTATTGAATAAATTATATATGTTGACACTTTTTGTAGCCAA
ATAAACATCTCCTTTTCCTCTCCACTAGTTTGTGCCTTTTTTTCCTATGTA-TCGTATAATCGAAGCTTCAAAGATATTG
TTCTCACATGCTGATCTTGTTTTCGTTAAAATGATAGTCATATAAACTGTTTCGGTCCCATCTAGTCCTCAAATTGCCTA
AATTTACTCCGCGCTCCAGGAAATCTAGT--TCCACACGGCAAATCCTGATTGCATAATATGTTTGGCAACTGGCTCCAC
TTCACTCTATACATTGGTGTGCCAACATCCTGATTACACAATAAGCTCATCCTAACTCACTTGTTTTGTCAAGGAACAAT
TCACAAAATGAA--TGCAAACAAAAGTTATCACAAAAATAATTTTGGAGTGAAATAAAATTTCACACAGAATCAAAATTT
ATCACAGGTTCAAATATCACACACAAGAAAAAATTCTCACATCATCGCCACCAAATGGAATATTGATACACATAGTA---
AAATTTATCATAGTTTAAAATTTTACACGCAAGAAAATTTCTCACTCGGTGCAAAATGTGCATTGGATTGTGAAAATTGT
ATTTTTTTTCAGTTTGACACTTCTTCATCACTATGAGGTGTCAACTGCATTGCTTTATCTTCTGTAGTGACTTGAGAAGC
TAGCTGCATTATGACCAATAGAGGCAAACAAGCCATGTATATAGACCAGTCAATACCCAATACCTTAGGCCTGGTTATTT
TAAGAAACAAAATTATTGAAAAATATAAAATTTCCTCTATTTTTACCAATCCATGTAGCATCAAAATCAGTGAGAAAATG
AGAATAGCACCTGGATAATTTAAGTCCAAAGAATTGTAATAGTGTCCAAAGAACTTGCTT-AAGGAAATTAATAACCCAG
ATGATAGTGGCATTATCAAATTTAAACAACTGCAGGCACCTCACCTCAAACATGTAGGTTACTGAATTAAATCAATTAGA
ATGGCACCACATAAGTAATGAGCAATCAGGATATGTTGCCATGAGT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S----S------S-----------------
--------------S---S--SS-S-------------SS---S-----S----------SSSSSS-SSSS-SSS-S-SS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S---SS-------------S-----SSSSSSSS--
-------S---S---S--S--------------SS--S-------------------S---S-S------------S---
---------SS----S---------S-------S------S----S----SS----S-----S-------S---------
S--------S-----SSS------------------------------------------SS-S----S-----------
S---------S---------S--S------SS--SS-SSS--------S--------------------S----------
S----------------S-------S-S-----------SS----S--------S---------S----SS----S----
--------------S--S-------S-SS----------------S-----S---------------S----SS-SSSSS
-SSSSS-S--------SSS---S---------S---------S---SSSSSS--S----------------S--------
S-----------------------S-S----------S---SS--------SSS-----S--S-S----------S----
-S-S------SS---SS--S-SS-----SSS----S---S---------S--S-----S-----SS------S----S--
-S--S--S--------------------------------------S--S---S---------S-S--S---S-----S-
-S------SSSSSS----S------S----S---S-------SS----SSS------S----------S--S--------
------S---------------S------------------SSS------------------S-----SSSSSSSS-SSS
--------------S-S----S--S---S----------------SSS----------------------------S---
--S----SSS----------------S----S------SS--S------------S--S----S-----S---S-----S
S--S-----S---SS----S---S---S-------------S---S---S-------------S---S---SS------S
S-------------S--------SSSSSSS-S-----------S-----S-----------SS------S----S-S--S
SSSS----------------------S------S-------SSSS--S------------S--------S-S---S-S--
-SSSS------------S-------------S--S---------S---S--------------------------S----
---------S---------------SS--S--S-S------S----
>forward_67
-----------------------------------------------GCAGGGTAGGGGAGCAATTT-------------
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>reverse_1718
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-------------------------------------CCTGCGCCGGCTATTTTTAC-----------------------
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>forward_1315
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---------------ACCACCTCCCTCTCCATCTC---------------------------------------------
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>reverse_2762
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-----------------------------------------CGAAACTGTTCTCCCCCTCC-------------------
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