>input_sequence_48328
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-----------------------------------------------------------CCCCAGATCCAAACCGCCGCC
ACCCAGAAATTCAAGCACCCCTCCCACGCCTCCCTCCATCGGCCAACCCCGTCCAGGTTCCGGACCGCCATGTCGTCGTG
GTTTCC--------GTCCTCCTACTACGACGAGGATGACGTCAAGCCGGCGGTGACGACGCATTGGCGCCGTGACTAT--
----GGCTACGGCTACGGCGGGGGAGTCGCCGGGGAGGACGTCAAGCCGCGTCCGGGTCCTCCGGGAGCAGGAGCAGGAG
CAGGCCGAGGTGTACATGGACAGGACGATCGGGCGGCGCTCTCTTGGCCGGCGGCCGAGGAGTTCAAGTCGACGCTGCGC
ACGCAGGAGTCCCTCGCCGGCCTCCGCACCAGGTACGGCATCCCGGAGGGGTTCGGCCTGCACCTCGCCGGCCCCGCCCA
GGCAGTGTGCGCGCCGCCCCCTCCCGCCGCTCGCGGAGCCCGAGGCGGCGCCGCGGCGGTGCCGATCTGCGTGCACACGC
AGGCGTTCGCCGCGGGCATGCGCCTGCCGCTGCACCCCTTCTTCAGCGACGCGCTCGCGCACTTCGGCATCGCCCCGTCG
CAGCTCGCGCCCAACGGGTGGCGCGTCCTGGCCGGCTTCGCGGTGCTCTGCCACTTCCGCGGCGCCGGCGCGCCCTCCTT
GCCGGTGTTCCGCCACTTCTTCGCCCTCACGCCGCTCCCCAACGGGAAGGGCTGGTTCTCCTTCCGCTCCAGGGAGAGCG
TCCCGTCGCTCTTCACCGGGCTCCCCACGTCCGTCAAGGGGTGGAAGGAGGAGTTCCTGCTCGTGTCGCCTCCGCCGGGC
GCGCCCTGGAAGTGCCCCGTGCGGTGGGGCTCCCCGACGAAGGAGGCGACGAGCGACCCCATGCTCACCGGCAACGATGC
GGCCGTGGCGTGCCGGCTGTCGCAGGGGCAGGGCGTCGTCGACCTTAAGACCTACCTCTCCGAGAGCAACCTCGTCGCCG
CCAAGATTAGCCGCGCCCCGGCGTGTGTCGGTACGTATGCGTGTCATTACTG--TAGGCACATGTGGATAGATGGATGGA
GTGGAGAATGTTT-AACGTTGGATTGTTTCTGTGCGCAGGGACGGGAGCTTCCCAAGGCGCAGCGCCACCGACGGCCTCA
GGGAAGAAGAGAAAGGTGGCTGCTCCTGCTGGTGCTGCTGTTGCTGGCGGCGGCGGCGGCGTCGGCGACGTGCTTCGTTC
GGAGCTGCGCGCGAAGGAGATGGCCCTCTCCAAGGCCAAGGGCGAGATCAGCCAGCTGAAGAAGGAGCTGGGCGATGCCA
AGAAGAGGGAGCTTGCCGAGGCGCAGCAGGCACTGGCCTACGCGGCGCAGGTGCTCAAGCCGGAAGGCGGCGGGAAGGGC
GCGGGGGCCGGCAAGCGGCGTCGTGGCGCCCAGTGATCACGTACGTCGTGACCAACGGTGGGCCGAGTGCAGTCGGCTGC
TGGGTCGAGGTTTTTAGCAGACGTAGTTATGTTTGAGTTGGCTGCTGAGGTCGCGTTGCAACAAATTACGAACTTAGAAA
TTTGTGGAGTTCTGCAAGAAAAAAATGTTGAAATC---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------
>chr1D_1_TraesCS1D01G112700
TGAGTATAAGCATTCATGACTTGGCTTTTACCGATGATGTTGTCTGGAAGCTTCGAAGAGAAGAAGATTCAGAAGAATCA
CACAGTGTAGGAATGCATCTTAACAAAGCATTAATTCGCGTGGTAAGAGGGACATACATGTTCATTTGGTATGTGTGCAA
GTGAGTTTATTTTATGAAGGACGAAAACAATGTGTGTTGTGATGGTAGATTTAAGGGTTAAGTGCCAAAAATTGTGTCAA
CTATGTAATAAGATATTTAAGTATTGATGAACAATATATAAGTTGATGCCCATGAAAACAAATGTCGATGCAAACATTAT
AGGCACAATGAGAGAAAAAGAAGACAAGCTAAGCCTAAGAGTGAATGAGTGAGTGAGTGAAGATGGGAGTCCCACATGCA
T-------------------------------ACATGGAAGCATCTCGCTTCATGACATTGCGCTAATTGAACAACATAC
CGCAATCGCCAATGTGTTGAGGTGGGTGAAGGAAGATAACATAAGAAGTCTTACATATATGATATATATATGTTCATATT
TAAC-TTCT-----------------------------------------------------------------------
--------------------------------------------------------------------------------
----GGCAAATTATTGATAGAGAAAAAAG--GTAGTACATAGGGTCACTTCATTTTTTGTTTGAG---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------TGCCATGCCTCCTGGCGAACGTTCGATGGTTATGAGAGTTTTAT-AAAAAATCTAACCGC
GCAAACTCGGATGATCCACTAGTTCTTACTTCTGG-AAAG--AAAGAAAAAACTATACAAATTAACATTTGTTGTTGAAA
TGGAGTACTATATCTCCAAGCGCTTGAACGAAGTAAATTCAAGTTTGAAATTTGAAATCAAATGCCTAAAGAAGATGGAG
TCTCTTTTTTTAGGGTAGAAGATGAAGTCACTGTA---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------ACGTTCTTGATAAAGTCC
AACGCAATCTTCTGCTGCAGTCGAATCGCTCGCTCATGATCCGTTTCCACTTTCCATAAAACAAGCCAACCTTCCACCGG
AAGGAAGCCCCCACGAACGTTAAAAGTG----GCCCGCCCGTTCCTTCCTCTCCCCACACCCCAGATCCAAACCGCCGCC
ACCCAGAAATTCAAGCACCCCTCCCACGCCTCCCTCCATCGGCCAACCCCGTCCAGGTTCCGGACCGCCATGTCGTCGTG
GTTTCC--------GTCCTCCTACTACGACGAGGATGACGTCAAGCCGGCGGTGACGACGCATTGGCGCCGTGACTAT--
----GGCTACGGCTACGGCGGGGGAGTCGCCGGGGAGGACGTCAAGCCGCGTCCGGGTCCTCCGGGAGCAGGAGCAGGAG
CAGGCCGAGGTGTACATGGACAGGACGATCGGGCGGCGCTCTCTTGGCCGGCGGCCGAGGAGTTCAAGTCGACGCTGCGC
ACGCAGGAGTCCCTCGCCGGCCTCCGCACCAGGTACGGCATCCCGGAGGGGTTCGGCCTGCACCTCGCCGGCCCCGCCCA
GGCAGTGTGCGCGCCGCCCCCTCCCGCCGCTCGCGGAGCCCGAGGCGGCGCCGCGGCGGTGCCGATCTGCGTGCACACGC
AGGCGTTCGCCGCGGGCATGCGCCTGCCGCTGCACCCCTTCTTCAGCGACGCGCTCGCGCACTTCGGCATCGCCCCGTCG
CAGCTCGCGCCCAACGGGTGGCGCGTCCTGGCCGGCTTCGCGGTGCTCTGCCACTTCCGCGGCGCCGGCGCGCCCTCCTT
GCCGGTGTTCCGCCACTTCTTCGCCCTCACGCCGCTCCCCAACGGGAAGGGCTGGTTCTCCTTCCGCTCCAGGGAGAGCG
TCCCGTCGCTCTTCACCGGGCTCCCCACGTCCGTCAAGGGGTGGAAGGAGGAGTTCCTGCTCGTGTCGCCTCCGCCGGGC
GCGCCCTGGAAGTGCCCCGTGCGGTGGGGCTCCCCGACGAAGGAGGCGACGAGCGACCCCATGCTCACCGGCAACGATGC
GGCCGTGGCGTGCCGGCTGTCGCAGGGGCAGGGCGTCGTCGACCTTAAGACCTACCTCTCCGAGAGCAACCTCGTCGCCG
CCAAGATTAGCCGCGCCCCGGCGTGTGTCGGTACGTATGCGTGTCATTACTG--TAGGCACATGTGGATAGATGGATGGA
GTGGAGAATGTTT-AACGTTGGATTGTTTCTGTGCGCAGGGACGGGAGCTTCCCAAGGCGCAGCGCCACCGACGGCCTCA
GGGAAGAAGAGAAAGGTGGCTGCTCCTGCTGGTGCTGCTGTTGCTGGCGGCGGCGGCGGCGTCGGCGACGTGCTTCGTTC
GGAGCTGCGCGCGAAGGAGATGGCCCTCTCCAAGGCCAAGGGCGAGATCAGCCAGCTGAAGAAGGAGCTGGGCGATGCCA
AGAAGAGGGAGCTTGCCGAGGCGCAGCAGGCACTGGCCTACGCGGCGCAGGTGCTCAAGCCGGAAGGCGGCGGGAAGGGC
GCGGGGGCCGGCAAGCGGCGTCGTGGCGCCCAGTGATCACGTACGTCGTGACCAACGGTGGGCCGAGTGCAGTCGGCTGC
TGGGTCGAGGTTTTTAGCAGACGTAGTTATGTTTGAGTTGGCTGCTGAGGTCGCGTTGCAACAAATTACGAACTTAGAAA
TTTGTGGAGTTCTGCAAGAAAAAAATGTTGAAATCTGC-------------TTGGTTGATGATTCTCACGTTGTTAGCAA
AAGT-------ACATTTTGATACGTAGGTAATATGTATTTTCTTCAT----ACCCGAAATGTTTCACCACATTTTAATCA
CCACTAGCCTAATTGAAGCTCAGAAATTCCCCTTCATTCCAAAATACTTGTCATACTTAAACTAAAACCACGTCAAGTAT
TTTGGAACGAAGAATGTACTTAGCATAGGTGTGCACTTTTAGAAAACTACTCCCTCTGTCCGAAAATACTTGTCATCAAA
ATAGACAAAAATAGTTATATCTAGAACTAAAACACATCTAGATACATCTCCTTTTATCCATTTTGATGACAAGTATTTTC
GAACGGAGGGAGTATTTGATCGAGCCAGTAGCCGCCTCGTCCCTAGGCTTGAGAATTCAGGGGCCCGGGGTCGAAATAAG
AACCCACCGCCCCTCAATATAAATATATGGAAATATGAATCTATGCATGTATGTACTTTTTTAGTCTGCGTCTAAATTTT
GAGTGTGGCTAGGTATCAGTCAAGTGACATAATATGCAAGAGAGAAAAAGGAAAAACTGATTTTTTTTATGCACGGATCT
TAATGTAAGATCTCATGGATATAGCATCAACTATCGATTGAGACTTAGCAAGACTGATAAGTTTTGTCTTAGAGTCAAAT
ATCTTTAATTTGACCCAACTTACAGAAAAAAGTATCAACATTCAGTAGCAAATAAATATCATTAGTTTCATATTACATAT
ATTTGGTATTGTAGATGTTGATATTTTTTTAATATAAGTTTGATCAAAGTTTACAAAAATTTGACTTGACACAAATCTTA
CAACAGAGGGAGTATATAGTAATGCCCTTTAACATTTGCTTTTGCTAAGTCTCAGTTGATTCAGACCTTTTTATGTCCCA
GTCGATACTATATTCCTTTGATCTTGCATTGAGATTTGTACAATGTTTTTTTCCTTTAGTTTTTCCTTTTTTCTTCTTAT
ATGTATGTCACTTGACTGA
>chr1A_1
TGAGCATAAGCATTCATGACTTGGGTTTTAGCGATGATGTTGACTGGAAGCTTCAAAGGGAGGAAGATTCAAAAGAACCA
CATAGCGTAGGAATGCATCTTAACAAAACATC--------TGGTAAGAGGGACATACATGTTCATTTGGTATGTGTGAAA
GTGAATGTATTTTATGAAGGAAGAAAACAATGTGTTTTGTGGTGGTAGATTTAAGGGTTAAGAGCAAAAAATTGTGTTAA
CTATATGGTAAGATGTTTAAGTATGGATGAATAATATAAGTTGATGT---CCTTAAAACAAATGTTGATGCAA------T
AGGCACAATGACAAAAAACGAAGACAAGCTAAGCCTAAG--------AGTGAGTGAG-----------------------
T-------------------------------ACATGGAAGCATCTCGCTTCATGACATTGCGCTAATTGAACAACATAC
CACAATCATGAATGTGTTGAGGTGGGTGGAGGAAGATAACATAAGAAGTCTTACATGTATGATCTATATATGTTTATATT
TAAC-TTTGGTTACAAATTCATCGAAATGTGTAAAGAAACATTACACCAAAACTTAGTTTTCTTTTTGGTGCCTACATAA
GTGCAAGTCGAAGAACCAAGCACATGATTTATTTATGAGTCATATGTATGTTTTAAGTCAACTCGAACAAAAGCTAGCAT
CAAGGGCAAACTATTGATAGAGAAAAAAGTAGTAGTACACAAAGTCACTTCATTTTTAGATACAAACGACATGATGGAGT
GTGTGTATCTAAACTTTTCAAACTTTGGCTACGTAAAAGATATTAGATCCGTCAACTAAAAATAACAATACCATTTTATC
CTTCTTTAATCTTTTTCAAAATACCTCATTTATAGTTTCTATAAATGCATGTT-CATCTAAATAATAATACTCAAAATTG
TGTACCCACTTACTCGGC--------------------------------------------------------------
-----------AAAACAAACTTTTTTATGGCAA-TTTAGATGTCGCGAGAATAAACAAATTTAGTTAGCAAGCCCGACAA
ATCCTGACAAAAACAAATAAACTGGATGAA------TTTGCCATGCTTGCCAACTAAACTTGCCATCGAAAA-AAAAAAA
TGCCATGCAAATCGTTCACGTGACATGCCTCCTGGTGAACGTTCGAGGGTTATGAGGGTTTCCTAAAAAAATCTAACCGC
ACAAACACA----------------TTACCTCTGG-AAAAGAAAAAAAAACCCTATACAAATCAACATTTCTTTAAATAG
GGTAC-----TATATCCCAGCGCTTGAATGAAGATGGG------------------------------------------
-------------------------AGTCACTGTA---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------ACGTTCTTGATTAAGTCC
AACGCAATCTTCTCCTGCAGTCGAATCGCTCGCTCATGATCCGTTTCCACTTTCCATAAAACAAGCC-------------
-AGGAAGCCCCCACGAACGTTAAAAGTG----GCCCGCCCGTTCGTTCCTCT-------CCCCAGATCCAAACCGCCGCC
ACCCAGAAATTCAAGC-------------CTCCCTCCATCGGCCAACCCCGTCCAGATTCCGGACCGCCATGTCGTCGTG
GTTTCC--------GTCCTCCTACTACGACGAGGATGACGTCAAGCCGGCGGTGACGACGCATTGGCGCCGTGACTATGG
CTACGGCTACGGCTACGGCGGGGGAGTCGCCGGGGAGGACGTCAAGCCGCGTCCGGGTCCTCCGAGAGCAGGAGCAGGAG
CAGGCCGAGGTGTACATGGACAGGACGATCGGGCGGCGCTCTCTTGGCCGGCGGCTGAGGAGTTCAAGTCGACGCTGCGC
ACGCAGTAGTCCCTCGCCGGCCTCCGCACCAGGTACGGCATCCCGGAGGGGTTCGGCCTGCACCTCGCCGGCCCCGCCCA
GGCAGCGTGCGTGCCGCCCCCTCCCGCCGCGCGCGGAGCCCGAGGCGGCGCCGCGGCGGTGCCGATCTGCGTGCACACGC
AGGCGTTCGCCGCGGGCATGCGCCTGCCGCTGCACCCCTTCTTCAGCGACGCGCTCGCGCACTTCGGCATCGCGCCGTCG
CAGCTCGCGCCCAACGGGTGGCGCGTCCTGGCCGGGTTCGCGGTGCTCTGCCACTTCCGCGGCGCCGGCGCGCCCTCCCT
GCCCGTGTTCCGCCACTTCTTCGCCCTCACGCCGCTCCCCAACGGGAAGGGCTGGTTCTCCTTCCGCTCCAGGGAGAGCG
TCCCGGCGCTCTTCACCGGGCTCCCCACGTCCGTCAAGGGGTGGAAGGAGGAGTTCCTGCTCGTGTCGCCTCCGCCGGGC
GCGCCCTGGCGGTGCCCCGTGCGGTGGGGCTCCCCGACGAAGGAGGCGACGAGCGACCCCATGCTCACCGGCAGCGATGC
GGCCGTGGCGTGCCGGCTGTCGCAGGGGCAGGGCGTCGTCGACCTGAAGACGTACCTGTCCGAGAGCAACCTCGTCGCCG
CCAAGATTAGCCGCGCCCCGGCGTGTCTCGGTACGTATGGGTGTCACTACTGTATAGGCACATGTGGATAGATGGATGGA
GTGGAGAATGTTCTAATGTTGGATTGTTTCTGTGCGCAGGGACGGGAGCTTCCCAAGGTGCAGCGCCGCCCACGGCCACA
GGGAAGAAGAGAAAGGCGGCTGCTCCTGCTGGTG------------GTGGCGGC---GGCGGCGGCGACGTGCTTCGCTC
GGAGCTGCGCGCGAAGGAGATGGCTCTGTCCAAGGCCAAGGGCGAGATCAGCCAGCTGAAGAAGGAGCTGGGCAATGCCA
AGAAGAGGGAGCTTGCGGAGGCGCAGCAGGCACTGGCCTACGCGGCGCAGGTGCTCAAGCCGGAAGGCGGCGGGAAGGGA
GCGGGGGCCGGCAAGCGGCGTCGTGGCGCCGAGTGATCACGTACGTCGTGACCAACGGTGGGCCGAGTGCACTCGGCTGC
TGGGTCGAGGTTTTTAGCAAACGTAGTTATGTTTGAGTTGGCTGCCGA-GTCGCGTTGCAACAAATTACGAACTTAGAAA
TTTGTGGACTTCTGCA--AAAAAATTATTGAAATCTGCCTTGAGGTT-GAGTTGGTTGATGATTCTCACATTGGTAGCAA
AAAAGTAGTTAACATTTTGATACGGAGGTAATATTTTCTTTCTTCAATTCAACCTGAAATGTTTCACCACATTTTAATCA
CCACTAGCCTAATTGAAGTTCGGAAATTCCCCTTCATTCCAAAATAATTGTCATATTTAAACTAAAACCACG--------
--------------------------------------------------------------------------------
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-------------------
>chr1B_65
----------------------------------------------------------------AGATTCAGAAGAACCA
CACAGTGTAGGAATGCATCTTCA-AAAGCATTAATTCGCGTGGTAAGAGGGACATACATGTTCATTTGGTATGTGTGCAA
GTGAGTGTATTTTATGAAGGAAGAAAACAATGTGTGATGTGGTGGTACATTTAAGGGTTAAGAGCAAAAA-TTGTGTCAA
CTATGTAATAAGCTGTATAAGTACTGACGGACAATATATAAATTGATGCCCCTAAAAACAAATCTTGATGCAA-CATTAT
ATGCATAATGATAT-AAAAGAAGACAAGCTAAGCCTAAG--------AGTGAGTGAG-----------------------
TGAGTGAGTGAAGATGGGAGCCCCACATGCATACATGGAAGGATCTTGCTTCATGACATTGCGCTAATTGAATAACATAT
CACAATCGCCAATGTGTTGAGGTGGGTAGAGGAAGATAATATAATAAGTCTTACATATATGATCTATATATGATTATATT
TCACTTTTGGTTGCAAATTTATCGAAAGGTGTAAAGAAACATTACACCAAAGCTTATTTTCCTTTTTGGTGCCTACATAA
GTGCAAGTGGAAGAACCCAACACATGATTTATTTATGAGTCATATGTATGTTTTAAGTCAACTCGAACAAAATCTAACAT
CAAGGGCAAATTATTGATAGAGAAAAAAG--GTAGTACATAAAGTCACTTCATTTTTACATATAAACGGCATGTTGGGGT
CTGTGTAGCTAAACTTTTCAAACTGC--CTATATAAGAGATATTAGATCGGCCAACTAAAAATAACAATACCATTTTATC
CTTCACTAATCTTTTTCAAATACCATCATTTATAGTTTCTATATAAGTATGTAACATATAAATAATAATAATCTAAATTG
TGTACCGACTTACTAAAATGAATAGACATATAGCATAATAACGATATCAAAAGGAATACTATTGTGTTACATCCCCTGCG
ATGGCACGGCGAAAAGAACATTTTCGATGGCAATTTTAGTTGTCGCCAGAATAGTCAAATTTTGTCAGCAAGCACGGCAA
ATCCTGACAAAAAAATAAAATTAAACTTGACGGATTTTTGCCATGCTTGCCAACTAAACTTGGCATTCATAGGAAAAAAT
TGTCATGCAAATTGTTCGCTTGCCATGCCTTCTAGCGAATGTTCGATGGTTATGAGGATTCTAT-AAAAAATCTAGCCGC
GCAAACACGAGTGATCCACTAGTTATTACCCCTGGAAAAG--AAAGAAAAAGCTATACAAATCAACATTTTTCTAAAATA
A-GAGTACTATATCTCCGAGCGCTTGAATGGAGTAAATTCAAGTTTGAAATTTGAAATCAAATGCCTAAAGAAGATGGAG
TCACCGTAACGTTTTTTTTTGACCTGGAACCACTTGGATCCCATTACTCAACTGGCTCAGCGACATCGCTGGCCACCAAC
GCGCATACATCGTTAGGCACAGCCTCCATCCACAGACAGTGAGGTACCTGGCCATTACTCCCCAATGCAGCAAGTGCATG
GGCAACCTTATTACAATCTCGAGGAGCAAACACATAGTTTACGATATTAAAACTAAGACGAATAAACTGGCGAATGTCTC
TATAGAATGCCTTCAGGAGCTCGATCATAGCTTGTACTTTGCAGGGCCTTCAGTAGGATTTGACGTTCTTGATCAAGTCC
AACGCAATCTTCTCCTGCAGTCTAATCGCTCGCTCATGATCCGTTTCCACTTTCCATAAAACAAGCCAATCTTCCACCGG
AAGGAAGCCCTCACGAACGTTAAAAGTGAGTGGCCCGCCCGTTCCTTCCTCT-------CCCCAGATCCAAACCGCCGCC
ACCCAGAAATTCAAGCACCCCTCCCACGTCTCCCTCCATCGGCCAACCCCATCCAGATTCCGGACCGCCATGTCGTCGTG
GTTTCAGACTTTCAGTCCTCCTACTACGACGGGGATGACGTCAAGCCGGCGGTGACGACGCATTGGCGCCGTGACTATGG
CTATGGCTACGGC------GGGGGAGCTGCCGCGGAGGACGTCAAGCCGCGTCCGGGTCCTCCGGGAGCAGGAGCAGGAG
CAGGCCGAGGTGTACATGGACAGGACGATCGGGCGGCGTTCTCTTGGCCGGCGGCCGAGGAGTTCAAGTCGACGCTGCGC
ACGCAGGAGTCCCTCGCCGGCCTCCGCACCAGGTACGGCATCCCGGAGGGGTTCGGCCTGTACCTCGCCGGCCCCGCCCA
GGCAGCGTGCGCGCCGCCCCCTCCCGCCGCTCGCGGAGCCCGAGGCGGCGCCGCGGCGGTGCCGATCTGCGTGCACACGC
AGGCGTTCGTCGCGGGCATGCGCCTGCCGCTGCACCCCTTCTTCAGCGACGCGCTCGCGCACTTCGGCATCGCGCCGTCG
CAGCTCGCGCCCAACGGGTGGCGCGTCCTGGCCGGCTTCGCGGTGCTCTGCCACTTCCGCGGCGCCGGCGCGCCCTCCCT
GCCGGTGTTCCGCCACTTCTTCGCCCTCACGCCGCTCCCCCACGGGAAGGGCTGGTTCTCCTTCCGCTCCAGGGAGAGCG
TCCCAGCGCTCTTCACCCGGCTCCCCACGTCCGTCAAGGGGTGGAAGGAGGAGTTCCTGCTCGTGTCGCCTCCGCCGGGC
GCGCCGTGGCGGTGCCCCGTGCGGTGGGGCTCCCCGACGAAGGAGGCGACGAGCGACCCCATGCTCACCGGCAGCGATGC
GGCCGTGGCGCGCCGGCTGTCGCAGGGGCAGGGCGTCGTCGACCTTAAGACGTACCTGTCCGAGAGCAACCTCGTCGCCG
CCAAGATTAGCCGCGCTCCGGCGTGTCTCGGTACGTATGCGTGTCATTACTG--TAGGCACATGTGGATAGATGGATGGG
GTGGAGAATGTTTTAACGTTGGATTGTTTGTGTGCGCAGGGACGGGAGCTTCCCAAGGTGCAGCGCCGCCCACGGCCACA
GGGAAGAAGAGAAAGGTGGCTGCTCCTGCTGGTGCTACTGCTGCTGGTGGCGGC---GGGGGCGGCGACGTGCTTCGTTC
GGAGCTGCGCGCGAAGGAGATGGCTCTCTCCAAGGCCAAGGGCGAGATCAGCCAGCTGAAGAAGGAGCTGAGCGATGCCA
AGAAGAGGGAGCTCGCCGACGCGCAGCAGGCACTGGCCTACGCGGCGCAGGTGCTCAAGCCCGAAGGCAGCGGCAAGGGC
GCTGGGGCCGGCAAGCGGCGGCGTGGCGCCCAGTGATCACGTACGTCGTGACTCGTGACCCAGTGATCGC----------
---GTCGATGTTTTTAGCAAACTTAGTTCTATGTTTG-TGTCTGGTGA-GTCGCGTTGCAACCAATGACGTGCTTAGAAA
TATGTGGATTTCTGCA--AATC-ATTATTGAAATCTGGCTTGAGGTTTGAGTTGGTTGATGATTCTCGCCTTGTTAGCAA
AAGT-------AGT-----------------TACGTTTTTTCTTCAATTCAACCCGAAATGTTTCACCGCATTTTAGTCA
CCAGTAGCCTAATTAAAGTTCGGAAATTC---------------------------------------------------
--------------------------------------------------------------------------------
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-------------------
>SNPs
----S-------------------S-----S-----------S-----------S---S--S---------------S--
--------------------------------------------------------------------------------
------S--------------S-------------------S--------------------S--S--------------
--------------S--------------------------S---------S-S-----------S-------S------
-----------S-S-------------------------SSSSSSSS----------SSSSSSSSSSSSSSSSSSSSSSS
--------------------------------------------------------------------------------
-S--------------------------S----------------------------------S----------S-----
-------SS-----------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------SS--------------S-S-SS-S---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------S-----------------------
------S--SS-------------S----S---------------------S----------S-------S--SSSS---
S----------------S----------S---------------------------------------------------
--S-SS-SSSSSSSS-SSSS--SSS-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------S------
-------------S-------------------------------------------------------S----------
----------------------------------------------------SSSSSSS---------------------
----------------------------S---------------------------S-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----S--------------------------------------------------------------------------
-------------------------------------------------------------------------S------
------------------------------------------------------------------------------S-
--------------------------------------------------------------------------------
-----S--------------------------------------------------------------------------
---------SS--------------------------------------------------------------S------
---------------------------------------------------S-----S----------------------
--------------------------S-----------------------------------------------------
----------------------------------------------------------S--------S--S------S--
------------------------------------S---S------S------SSS----S------------------
------------------------S-------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------S--------
-------------------S----------------------------S-------------------------------
--------S-------SS------S-S------------------------------------------S----------
------------------------S-----------S---------S---------------------------------
------------------S--S------------------------S--------S----------------SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS
>forward_393
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------GTGAGTGAAGATGGGAGTCCC-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------
>reverse_3031
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------GACGGCCTCA
GGGAAGAAG-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------
>forward_2852
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------GCGTCGTCGACCTTAAGACC----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------
>reverse_3885
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------AGGCTTGAGAATTCAGGGGC----------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------
