>input_sequence_48308
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-----------------------ATGCCGATGTTGCCCAGCTCCTTCACCACCTCCTCCTCATGGCAATCACACCAAGAT
GCCTCCTCGATTTGCACTAACCAGGAACCAGACTACGACCATCCTTACTACTTCGGCATTGAGGAGGTAGCCGTGGACGC
CGACGAGCTGGAGCTCGGCCTCCGGGCTCACAAGGCGACCAGGGTCGACTACCTCAGCTCGCCGTACCAGGCGTCTTGGC
CACCGGCGCAGGCCGACCTCGAGTCGTCGCGCGTCAGGAAGACGAAGCAGTTCCGGGACGTCCTTGAGACGTGCAAGCAG
AAGGTGGAGGCCATGGAGGCCATGGAACGGTCGTCATCGCCGGTCGGCAGTGGCGGGTTCGAGGAACAAG---GTGAGGC
GCTGGTCGCCGTGGACGACGTCCGGGCCGGCGGTGGCGGCAGCGGAGCTGATGGCATGCGGCTCGTGCAGCTGCTTGTCG
CCTGCGCCGAGGCCGTGGCGTGCCGCGATCGCGCGCAGGCGGCTGCGCTGCTGCGTGAGCTGCAGGTTGGCGCGCCCGTG
CACGGCACGGCGTTCCAGCGCGTCGCGTCGTGCTTCGTGCAGGGCCTGGCGGACCGGCTGGCCCTGGCGCACCCGCCGGC
GTTGGGCCCGGCCAGCATGGCGTTCTGTGTCCCGCGGTCGTCGTGCCTCGACGGGGCGCGCGGCGAGGCGCTCGCCGTGG
CGTACGAGCTGTGCCCGTACCTGCGCTTCGCGCACTTCGTGGCGAACACGTCCATCCTGGAAGCCTTCGAGGGAGAGACC
AACGTCCACGTGGTGGACCTCGGCATGACGATGGGCTTGAACCGCGGCCACCAGTGGCGCGCCCTGCTCGACAGCCTCGC
CACACGGGCCAGCGGCAAGCCGGCGCGCGTTCGCGTCACCGGCGTCGGCGCCCGCGTAGACACCATGAGAGCCGTCGGGC
GCGAGCTCGAGGCGTACGCGGAGGAGCTCGGGATGACCCTCGAGTTCATGGCCGTCGACCGCACCCTGGAGAGCCTCCAC
GTGGACGACCTTGGCGTCGAGGCCGACGAGGCCGTGGCCATCAACAGCGTCCTGGAGCTGCACTGCGTGGTGAAGGAGAG
CCGCGGCGCGCTCAACTCGGTGCTGCAGACTATCCGCAAGCTCTCGCCGAAGGCGTTCGTGCTCGTGGAGCAGGACGCCG
GCCACAACGGGCCCTTCTTCCTGGGGCGGTTCATGGAGGCGCTCCACTACTACGCCGCGCTGTTCGACGCCCTCGACGCG
GCGCTCCCGCGCTACGACGCCCGGCGCGCGCGCGTGGAGCAGTTCCACTTCGGCGCCGAGATCCGCAACGTGGTCGGGTG
CGAGGGCGCGGCGCGCGTGGAGCGGCACGAGCGCGCGGACCAGTGGCGGCGCCGCATGAGCCGCGCGGGCTTCCAGGCCA
TGCCCTTCAAGATGGCGGCCAAGGCGCGGGAGTGGCTGGA---GGAGAACGCCGGCGGCAGCGGATACACGGTGGCCGAG
GAGAAGGGATGCCTCGTGCTTGGATGGAAGGGAAAGCCCGTCATCGCCGCCTCGTGCTGGAAATGCTAG-----------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------
>chr3B_1_TraesCS3B01G424600
CACTTGTGGTCTGTTCGTTTTTCTGTAAATTAAGTGGCTAATTCTCTTCTTTTTAATTAATTGATGAGGCAAAATTCCCT
CCTTTTCATTTTTGCTCATATGCATAGAAAGTTCTACTCCCTCTGTAAACTAATCACTCTTATACTCTTATTATGCCATG
TGAGTATTAGTTTATGGAGGGAGTGCATAAATTGTGAACTCTTATTATAAAATATTTTTGGTTTGCAAGGTATAATGAA-
----AATTTGGCCCAAAAAGGAAAATATGTATTCATGTAACTTTTAAAGTACTTATATCACATTTTTATATACAGGTAAA
TTCTTTCACACAATTTTGAGACTTTTAAACACTGTTTTTATT-AAAATTAACTAGGCTTTAGGATAGGTATCATCGTATT
TAAATAATATAGCACTTTCTCTATTTCGCCATTCTTGTCATAAATTAAAA--AAATGGAAGCACTACATTTAGAAAGCAA
TTACAAGAAAATAACATACTATAACATG----------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------CT
AAGTGTCTGGTTAAGGCTGATTATTCTTTTAGTTGGAGGCGATGTTACCATCGA--GTGTGCTTGGCGCCGGTGTGTGCC
TTGGCGTTTCCGAACAGTAACTCTCGAAGCAGTTAATATGCTTACAAATCAGGGAAAATGCAACAAGTGCACCCTTGCTT
CTCTCAATGAATAATAATGAAACAAAGATTTTCATGGCCGATGATGTGTTACCGAAACACATTTTCTGAAGAAGGGGGAC
ACC--CCTCGCAGAAATAAGAACACATAAATAGAGACTAGGCAAGACCTGATTGAGTTGTATGACAGAGACATTTTTAGT
TTATTAGCGGAACAGACGAGATCCCTTATTAATCAACTACAT--------------------------------------
--------------------------------------------------------------------------------
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----------------------------ATGCCGTCGTATGTATGTCACCCAGGAAGCTCGCTCTATATATA--GTGGTT
--GATTGAACCCACTACCAAGTTAAT------TAGCTCATTTGCCTTGCAACAAGATCTAATTAACTA-----ACCCCAG
TGCGTTAGACACCACTCACGAAAATGCCGATGTTGCCCAGCTCCTTCACCACCTCCTCCTCATGGCAATCACACCAAGAT
GCCTCCTCGATTTGCACTAACCAGGAACCAGACTACGACCATCCTTACTACTTCGGCATTGAGGAGGTAGCCGTGGACGC
CGACGAGCTGGAGCTCGGCCTCCGGGCTCACAAGGCGACCAGGGTCGACTACCTCAGCTCGCCGTACCAGGCGTCTTGGC
CACCGGCGCAGGCCGACCTCGAGTCGTCGCGCGTCAGGAAGACGAAGCAGTTCCGGGACGTCCTTGAGACGTGCAAGCAG
AAGGTGGAGGCCATGGAGGCCATGGAACGGTCGTCATCGCCGGTCGGCAGTGGCGGGTTCGAGGAACAAG---GTGAGGC
GCTGGTCGCCGTGGACGACGTCCGGGCCGGCGGTGGCGGCAGCGGAGCTGATGGCATGCGGCTCGTGCAGCTGCTTGTCG
CCTGCGCCGAGGCCGTGGCGTGCCGCGATCGCGCGCAGGCGGCTGCGCTGCTGCGTGAGCTGCAGGTTGGCGCGCCCGTG
CACGGCACGGCGTTCCAGCGCGTCGCGTCGTGCTTCGTGCAGGGCCTGGCGGACCGGCTGGCCCTGGCGCACCCGCCGGC
GTTGGGCCCGGCCAGCATGGCGTTCTGTGTCCCGCGGTCGTCGTGCCTCGACGGGGCGCGCGGCGAGGCGCTCGCCGTGG
CGTACGAGCTGTGCCCGTACCTGCGCTTCGCGCACTTCGTGGCGAACACGTCCATCCTGGAAGCCTTCGAGGGAGAGACC
AACGTCCACGTGGTGGACCTCGGCATGACGATGGGCTTGAACCGCGGCCACCAGTGGCGCGCCCTGCTCGACAGCCTCGC
CACACGGGCCAGCGGCAAGCCGGCGCGCGTTCGCGTCACCGGCGTCGGCGCCCGCGTAGACACCATGAGAGCCGTCGGGC
GCGAGCTCGAGGCGTACGCGGAGGAGCTCGGGATGACCCTCGAGTTCATGGCCGTCGACCGCACCCTGGAGAGCCTCCAC
GTGGACGACCTTGGCGTCGAGGCCGACGAGGCCGTGGCCATCAACAGCGTCCTGGAGCTGCACTGCGTGGTGAAGGAGAG
CCGCGGCGCGCTCAACTCGGTGCTGCAGACTATCCGCAAGCTCTCGCCGAAGGCGTTCGTGCTCGTGGAGCAGGACGCCG
GCCACAACGGGCCCTTCTTCCTGGGGCGGTTCATGGAGGCGCTCCACTACTACGCCGCGCTGTTCGACGCCCTCGACGCG
GCGCTCCCGCGCTACGACGCCCGGCGCGCGCGCGTGGAGCAGTTCCACTTCGGCGCCGAGATCCGCAACGTGGTCGGGTG
CGAGGGCGCGGCGCGCGTGGAGCGGCACGAGCGCGCGGACCAGTGGCGGCGCCGCATGAGCCGCGCGGGCTTCCAGGCCA
TGCCCTTCAAGATGGCGGCCAAGGCGCGGGAGTGGCTGGA---GGAGAACGCCGGCGGCAGCGGATACACGGTGGCCGAG
GAGAAGGGATGCCTCGTGCTTGGATGGAAGGGAAAGCCCGTCATCGCCGCCTCGTGCTGGAAATGCTAGA--CGCCGATC
ACAGCTGCTCGCCG-CCGGCCGCTTT--CGGAGCAC-TTCACGGTGCTCGCAGTATCCACGAGGACGTTCACGTGTACTT
CTGGGAGGTGCCGCAGTGTA------GGTGGGCGCCGCCGAGGTGTTCACGTTCATCGGGCAAATGGAGTTCTTCTACGA
CCAGGCGCGGGACGCCGTCCGGAGCGGC------------------------GTTCAAATACGCGAGCTCGGCGCTTCTC
CTTGTTGTGGTGGAGAGGCGGGCGGCGTGGGTGGATCCCGACGACATCAACGATGGCCACCTGGAGTCCTGGACTATTTC
TTCGCCATGCTCTGCGTCGGCAACTTCGGCACGTACCTGCTCTTCGCATGCATGGTGGCACAACAGCAAGAAGAATGCTG
ATTGAACTA-AGAGGTCACCGTGTA----TACCAATAAATTCTGAACGCTTGGTGATTAGTCAGTACTTCTTTTTTTTTT
GCGAATAGATTAGTCATTACTTCCTCTGTCCTGGTTTATAAGTTGGACACATATTTGAACCTTTTTAGAAATATATATGT
GTGTTTTTTTAACATCAGTACAAACACAAGCGCTCATATACACGCGCATACACTCATCCCTATGAACGCACACACGCACA
CCCTGCCCCTATGAGCACCTCCGAAAGACTGAGCCGGCATATCATCTTGAAATTTACGAAGTCACCGTAGGCACCTCGTC
GTCGACGGGAACGTCTCCTCCCACTGAATGCGCATCGCCGGAAATCCTGAAATAAATCCAGGAATAAATGTGAGCACCAG
GATTTGAACCCTGGTGGGATGGGGATACCACAGTCGCTCTAACCATCCAACCACAGGTTGATTCGCTAAATATATATGTG
TTATGTTGTACAAAAAATATATCTTTACATTTGTCGCCGAATGAGATTGAAACATATATTTTTTATAAACTATTATGTTT
TGATAGTTAAACTGAAGAACTCTATGACCGATGAACATTCTGTCAAGAGGGAGTAACGCATGCTATTTCT
>chr3D_186
CATAA---------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------TTGTGAAGTCATATTATAAAATATGTTTGGTTTGCAAAGCACAATGAGA
TATTAGTTTAGCCCAACAAGGAAAGTATGTATTCATCTAACTTTTAAAGTACATAGATCACATTTTTATGTACATGTAAA
TTCTTTCAGATAATTTTGAGACTTTTAAACACTGTTTTTATTTAAAATTAACTAGGTTCTAGGATCTGTATCGTCGTATT
TGAATAGTATAGCACTTTCTCTGTTTCACCGTTCCTATCACAAATTTAAAAGAAATGGTAGCACTAATTTTAGAAGGCAA
TTACAAAAAAACTGTCTGGTTAAGTGTCTGTG----------------------------------------------CC
CATAGGTTTAACAAATGCTAAG----------------------------------------------------------
--------------------------------------------------------------------------------
---TGTCTGGTTAAGGACGATTATTCTTTTAGTGGGAGACAATGTTACCATCGAAAGTGTGTATGGCGCCTGTGTGCACA
TTGGCGTTTCTGAACAGTAATTCTCGAAGCAGTTAATATGCTTACAAATCAGGGAAAATGCAACAAGTGCACTCTTGCTT
CTCTCAATG---AATAATGAAACAAAGATTTTCATGGCCGATGATGTGT-ACTGAAACACATTTTCAGAAGAAGAGGGAC
ACACACCTCGCAGAAATAAGAACACATAAACAGAGACTAGGCAAAACCTGATTGAGTTGTATGACAGAGACATTCTTAGT
TTATTAGCGGAACAGACGAGATCCCTTATTAATCAACTAATT--------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------ATGCCGTCGTATGCCACCC--------AGCTCGCTCTATATATATAGTGGTT
GAGATTGAACCCAGTACCAAGTTAAT------TAGCTCATTTGCCTTGCAACAAGATCTAATTAACTA-----ACCCCGG
TGCATCAGACACCAGACTCGAAAATGCCGATGTTGCCCAGCTCCTTCACCACCTCCTCCTCATGGCAATCACACCAAGAT
GCCTCCTCGATTTGCACTAACCAAGAACTGGACTACGACCATCCTTACTACTTCGGCATTGAGGAGGTGGCCGTGGACGC
CGACGAACTGGAGCTCGGCCTCCGGGCTCACAAGGCGACCAGGGTCGACTACCTCAGCTCGCCGTACCAGGCGTCTTGGC
CATCGGCGCAGGCAGACCTCGAGTCCTCGCGCGTCAGGAAGACGAAGCAGTTCCGGGACGTTCTTGAGACGTGCAAGCAG
AAGGTGGAGGCCATGGAGGCCATGGAACGGTCGTCATCGCCGGTCGGCAGTGGCGGGTTCGAGGAACAAG---GTGAGGC
GGTGGTTGCCGTGGACGACGTCCGGGGCGGCGGTGGTGGCAGCGGAGCTGATGGCATGCGGCTCGTGCAGCTGCTGGTCG
CCTGCGCCGAGGCGGTGGCGTGCCGCGACCGCGCGCAGGCGGCTGCGCTGCTGCGTGAGCTGCAGGTCGGCGCGCCCGTG
CACGGCACGGCGTTCCAGCGCGTCGCGTCGTGCTTCGTGCAGGGCCTGGCGGACCGGCTGGCCCTGGCGCACCCGCCGGC
CCTCGGACCAGCGAGCATGGCGTTCTGCCTCCCGCGGTCGTCGTGCCTCGATGGAGCGCGCGGCGAGGCGCTCGCCGTGG
CGTACGAGCTGTGCCCGTACCTGCGCTTCGCGCACTTCGTGGCGAACACGTCCATCCTGGAAGCCTTCGAGGGAGAGAGC
AACGTCCACGTGGTGGACCTCGGCATGACGATGGGCCTGAACCGCGGCCACCAGTGGCGCGCCCTGCTCGACAGCCTCGC
CACACGGGCCTGCGGCAAGCCGGCGCGCGTGCGCGTCACCGGTGTCGGCGCCCGCGTAGACACCATGAGGGCCGTCGGGC
GCGAGCTCGAGGCGTACGCGAATGAGCTCGGGATAACCCTCGAGTTCATGGCCGTCGACCGCACCCTGGAGAGCCTCCAC
GTGGACGACCTCGGCGTGGAGGCCGACGAGGCCGTGGCCATCAACAGCGTCCTGGAGCTGCACTGCGTGGTGAAGGAGAG
CCGCGGAGCGCTCAACTCCGTCCTGCAGACCATCCGCAAGCTCTCGCCGAAGGCGTTCGTGCTCGTGGAGCAGGACGCCG
GCCACAACGGGCCCTTCTTCCTGGGGCGGTTCATGGAGGCGCTCCACTACTACGCCGCGCTGTTCGACGCCCTCGACGCG
GCGCTCCCGCGCTACGACGCCCGGCGCGCGCGCGTCGAGCAGTTCCACTTCGGCGCCGAGATCCGCAACGTGGTCGGGTG
CGAGGGCGCGGCGCGCGTGGAGCGGCACGAGCGCGCGGACCAGTGGCGGCGCCGCATGAGCCGTGCGGGCTTCCAGTCCA
TGCCCTTCAAGATGGCGGCCAAGGCGCGGGAGTGGCTGGA---GGAGAACGCCGGCGGCAGCGGATACACCGTGGCCGAG
GAGAAGGGATGCCTCGTGCTTGGATGGAAGGGAAAGCCAGTCATCGCCGCCTCGTGCTGGAAATGCTAGA--CGCCGATC
ACTGCTGCTCGCCGCCCGGCCGCTTT--CGGAACGC-TTCAC------------------------------------TT
TTGGCAGGTGCCGCAGTGTACGTGATGGTGGGCGCCGTGGAGGTGTTCACGTTCATCGGGCAAATGGAGTTCTTCTACGA
GCAGGCGCGGGACGCCCTGCGGAGCGCGGATCTCCTGCGCGGCGATCGCGCTGTTCAAATACGCGAGCTCGGCGCTTCTC
CCTCTTGT---------------------GGTGGATCCCGACGACATCAACGATGGTCACCTGGAGTCCTGGACTACTTC
TTCGCCATGTTCTGCGTCGGCAACTTCGGCGCGTACCTGCTCTTCGCATG----GTGGCACAACAGCAAGAAGACTGCTG
ATTGAACTATAGAGGTCACCGTACTTGTGTACCAATAAATTTCGAACGCTTGGTGATTAGTCAGTACTTC----------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
>chr3A_193
TGTGACCACC----------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------TATTATAAAATATGTTTGGTTTACAAGGTACAATGAGA
AATTAGTTTAGCCCAACAAGGAAAAAAATTAAG-ATGTAACTTTTAAAGTACATAGATCACATTTTTATGTACATGTAAA
TTCTTTCAGATAATTTTGAGACTTTTAAACACTGTTTTTATTTAAAATTAACTAGGCTCTAGGATCTGTATCGTCGTAGT
TGAATAGTATAGCACTTTCTCTTTTTCGCCGTTCCTATCACAAATTTAAAA--AGTGGAAGTACTAAACTTAGAAGGAAT
TACAAAAAAAA--ACATACTACAACATGTGATCAGATGATTATGAGGATGGTCATACCTCTAGTCCACTACGAATCAACC
CATAGGTTTAACAAATGCTAAGGCGTTGTTCGGCAGTCCGCCCGCTTCGTGAAAATTGAGAATCTCGGGAGTACTGTTTC
GCTGGCTCTCCACTTTTTAACTAGAACTCTGTCAGCTCCGGGAGCGGCCTCGCGGAGCGAAGGGGCTCCGAACAGGCCCT
AAGTGTTTGGTTAAGGACGATCATTCTTTTAGTGGGAGACAATGTTACCATTGAAAGTGTGTATGGCGCCCGTGTGCACA
TTGACGTTTCTGAACATTAATTCTCGAAGCAGTTAATATGCTTACAAATCAGGGAAAATGCAACAAGTGCACTCTTGCTT
CTCTCAATG---AATAATGAAACAAAGATTTTCATGGCCGATGATGTGT-ACTGAAACACATTTTCTGAAGAAGAGGGAC
ACAC--CTCGCAGAAATAAGAACACGTAAATAGAGACTAGGCAAGACCTGATTGAGTTGTATGACAAAGACATTTTTAGT
TTATTAGCGGAACAGACGAGATCCCTTGTTAATCAACTAATAATTATGCCGTCTAGGGCTGGAAAAAAAATTCGAAGCTC
GCGAGCTAAACAAGTGGATCGTGACTCGGCTCGAATCGACTCGAACTCGAATAATAACAAGTCGAGCCAAGCTTTAATTT
AAGATCGTTTATAAAACGAGTTAAACGAGCCAATCTCACGAGTACTCGTGTAACTCGTTAGACTCGGTACAAAAGGTCAC
CCAAGCACCCTTCGTCCCATGCGCACAACACAACGCCTAGATGTTAAAGGAAATTACAATTGTTTGGTCATGTATATGTT
ACTAACTTGTTGATCATTGTGGTCATGTACAATTATTTCTGGTCAATGTTCATGTACATGGTACTGACTTGATGGTACTG
ACAATTGTAAGTTAAACTCGTACATGCTTACATTTGTTTGTGAATATTGTACATGTTTAATATGTATATTTTACATTCCC
AAGTAATCATTTTTACCATATTTGCAAGCTTTTATGTTCATATCATTAACGAGCTTAGCAAGCTAAACGAGCCAGCTCGC
GAGTTATACGAGTCGAGCCAATTTTGGATTCAAGCTCGTTATAGTAACGAGTCGAGTCGAGTTAGCTCGTTAACGAGTTG
GCTCGACTCGGCTCGAATTCCAGCCCTAATGCCGTCGTATGCCACCC--------AGCTAGCTCTATATATA--GTGGTT
GAGATTGAACCCACTACCAAGTTAAT------TAGCTCATTTGCCTTGCAACAAGATCTAATTAACTATACTAACCCCAG
TGCATCAGACACCACACGCGAAAATGCCGATGTTGCCCAACTCCTTCACCACCTCCTCCTCATGGCAATCACACCAAGAT
GCGTCCTCGATTTGCACTAACCAAGAACTGGACTACGACCATCCTTACTACTTCGGCATTGAGGAGGTGGCCGTGGACGC
CGACGAACTGGAGCTCGGCCTCCGGGCTCACAAGGCGACCAGGGTCGACTACCTCAGCTCGCCGTACCAGGCGTCTTGGC
CACCGGCGCAGGCCGACCTCGAGTCGTCGCGCGTCAGGAAGACGAAGCAGTTCCGGGACGTTCTTGAGACCTGCAAGCAG
AAGGTGGAAGCCATGGAGGCCATGGAACGGTCGTCATCGCCGGTCGGCAGTGGCGGGTTCGAGGAACAAG---GTGAGGC
GGTGGTCGCCGTGGACGACGTCCGGGCCGGTGGTGGTGGCAGCGGAGCTGATGGCATGCGGCTCGTGCAGCTGCTGGTCG
CCTGCGCCGAGGCCGTGGCGTGCCGCGACCGCGCGCAGGCGGCGGCGCTGCTGCGTGAGCTGCAGGTCGGCGCGCCCGTG
CACGGCACGGCGTTCCAGCGCGTCGCGTCGTGCTTCGTGCAGGGCCTGGCGGACCGGCTAGCCCTGGCGCACCCGCCGGC
CCTGGGCCCGGCGAGCATGGCGTTCTGCGTCCCGCGGTCGTCGTGTCTCGACGGGGCGCGCGGCGAGGCGCTCGCCGTGG
CGTACGAGCTGTGCCCGTACCTGCGCTTCGCGCACTTCGTGGCGAACACGTCCATCCTGGAAGCCTTCGAGGGAGAGACC
AACGTCCACGTGGTGGACCTCGGCATGACGATGGGCCTGAACCGCGGCCACCAGTGGCGCGCCCTGCTCGACAGCCTTGC
CACACGGGCCTGCGGCAAGCCGGCGCGCGTTCGCGTCACCGGCGTCGGCGCCCGCGTGGACATCATGAGAGCCGTCGGGC
GCGAGCTCGAGGCGTACGCGGAGGAGCTCGGGATGACCCTCGAGTTCATGGCCGTCGACCGCACCCTGGAGAGCCTCCAC
GTGGACGACCTCGGCGTCGAGGCCGACGAGGCCGTGGCCATCAACAGCGTCCTGGAGCTGCACTGCGTGGTGAAGGAGAG
CCGCGGTGCGCTCAACTCGGTGCTGCAGACCATCCGCAAGCTCTCGCCGAAGGCGTTCGTGCTCGTGGAGCAGGACGCCG
GCCACAACGGGCCCTTCTTCCTGGGGCGGTTCATGGAGGCGCTCCACTACTACGCCGCGCTGTTCGACGCCCTCGACGCG
GCGCTCCCGCGCTACGACGCCCGGCGCGCGCGCGTTGAGCAGTTCCACTTCGGCGCCGAGATCCGCAACGTGGTCGGGTG
CGAGGGCGCGGCGCGCGTGGAGCGCCACGAGCGCGCGGACCAGTGGCGGCGCCGCATGAGCCGCGCGGGCTTCCAGGCCA
TGCCCTTCAAGATGGCGGCCAAGGCGCGGGAGTGGCTGGA---GGAGAACGCCGGCGGCAGCGGATACACCGTGGCCGAG
GAGAAGGGATGCCTCGTGCTTGGATGGAAGGGCAAGCCAGTCATCGCCGCCTCGTGCTGGAAATGCTAGA--CGCCGATC
ACTGCTGCTCGCCGCCCGGCCGCTTT--CGGAACACTTTCAC------------------------------------TT
CTGGCAAGTGCCGCAGTGTACGTGGTGGTGGGCGCCGTGGAGGTGTTCGCGTTCATCGGGCAAATGGAGTTCTTCTACGA
GCAGGCGCGGGACGCCCTGCGGAGCGCGGATCTCCTGCGCGGCGATCGCGCTGTTCAAATACGCGAGCTCGGCGCTTCTC
CCTCTTGT---------------------GGTGGATCCCGACGACATCAACGATGGTCACCTGGAGTCCTGGACTACTTC
TTCGCCACGCTGTGCGTCGGCAACTTCCGCGCGTACCTGCCCTTCGCATG----GTGGCACAACAGCAAGAAGACTGCTG
ATTG-------------------CTTGTGTACCAATAAATTTCGAACGCTTGGTGATTAGTCAGTACTTC----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
>chr3B_896
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------CTATATATA--GAGGTT
--GATTGAATCCGGTAACAAGTTAAAATTAGGTAGGTCATTTGCGCTGCAACAAGACCTAATTAACTA-----CCC--AG
TTCATCACACACACACGTAAAATGGTGGGCATGGCACGCAACCACTTCCCTA-----CTTCATGGCAAACACAGGAAGGT
GCTTCA---ATTTGCACTAATCAAGAGCTAGACTACGACCATCCTCACTACCTCGGCATTGAGGAGGTAGCGCTCGACGG
CGTCGAGCTGGAGCTCGGCCCCCGGGCTTCCAAGGCGACCAAGGTCGACTACCTCAGCTCGCCGTACCACGCCACATGGC
CGCCTGCGCAGGCCGACTTCGAGTCGTCGCGCGTCAGGAAGACGAAGCAGTTCCGGGACGTTCTTGAGACCTGCAAGCAG
AAGGTGGAGGCCATGGAGGCTTTGGAGCACTCGC---CGCCGGTGGCCGGTGGTGGGTTTGAGGAACAAGCAGGTGAGGC
TGTGGTCGCTGCGGGAGATGTCGGGGGCGGTGGCGGTAGCGGCGGGGCTGACGGCATGCGGCTCGTGCAGCTGCTTGTTG
CATGCGCCGAGGCGGTGGCGTGCCGCGACCGCGCACAGGCTGCGGCGCTGCTGCGCGAGCTCCAGGTCGGCGCGCCCGTG
CACGGCACGGCGTTCCAGCGCGTCGCGTCGTGCTTCGTGCAGGGCCTGGCGGACCGGCTGGCCCTGGCGCACCCGCCGGC
CCTGGGCCCGGCGAGCATGGCGTTCAGCGTCCCGCGGTCGTCGTGCCTTGACGGAGCGCGCGGCGAGGCGCTCGCCGTGG
CGTACGAGCTGTGCCCGTACCTGCGCTTCGCGCACTTCGTGGCGAACGCGTCCATCCTGGAAGCCTTCGATGGAGAGAGC
AACGTCCACGTGGTTGATCTCGGCATGACAATGGGCCTGAACCGCGGCCACCAGTGGCGCGCCCTGCTCGACGGCCTTGC
CACGCGGACCGGCGGCAAGCCGGCACGCGTGCGCGTCACCGGCGTCGGCGCCCGCGTGGACACCATGAGGGCCGTCGGGC
GCGAGATCGAGGCGTACGCGGAGGAGCTCGGGATGTGCCTCGAGTTCAGGGCCGTCGACCGCACCCTGGAGAGCCTCCAC
GTCGACGACCTCTGCATCGATGCCCACGAGGCCGTCGCCATCAACAGCGTCCTGGAGCTGCACTGCGTGGTGAAGGAGAG
CCGCGGCGCGCTCAACTCCGTGCTGCAGACCATCCGCAAGCTCTCGCCCAAGGCGTTCGTGCTCGTGGAGCAGGACGCCG
GCCACAACGGGCCATTCTTCCTGGGGCGATTCATGGAGGCGCTTCACTACTACGCGGCTCTGTTCGATGCGCTGGACGCG
GCTCTCCCGCGCTACGACGCCCGGCGCGCGCGTGTGGAGCAGTTCCACTACGGCGCCGAGATACGCAACGTGGTCGGGTG
CGAGGGCGCGGCGCGCGTGGAGCGGCACGAGCGCGCGGACCAGTGGCGGCGCCGCATGAGCCGCGCGGGCTTCCAGTCCC
TGCCGATCAAGATGGCGGCCAAGGCGCGGGAGTGGCTTGA---GGAGAATGCCGGCGGCAGCGGGTACACGGTGGCCGAG
GAGAAGGGGTGCCTCGTGCTTGGATGGAAGGGCAAGCCCGTCATCGCCGCCTCGTGCTGGAAATGCTAGAGACACTGATC
ACA-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
>chr3D_1037
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------TCATGGCAAACACAGGAAGGT
GCTTCA---ATTTGCACTAATCAAGAACTAGACTACGAGCATCCTCACTACCTCGGCATTGAGGAGGTAGCGCTCGACGG
CGTCGAGCTGGAGCTCGGCCCCCGGGCTCCCAAGGCGACCAAGGTCGACTACCTCAGCTCGCCGTACAACGCCTCATGGC
CGCCTGCGCAGGCCGACTTCGAGTCGTCGCGCGTCAGGAAGACGAAGCAGTTCCGCGACGTCCTTGAGACCTGCAAGCAG
AAGGTGGAGGCCATGGAGGCTTTGGAGCACTCGC---CGCCTGTGTCCGGTGGTGGGTTCGAGGAACAAGCAGGTGAGGC
TGTGGTCGCTGTGGGAGATGTCGGGGGTGGTGGCGGTGGCAGCGGGGCTGACGGCATGCGGCTCGTGCAGCTTCTTGTTG
CATGCGCCGAGGCGGTGGCGTGCCGCGACCGCGCACAGGCTGCGGCGCTGCTGCGCGAGCTCCAGGTCGGCGCGCCCGTG
CACGGCACGGCGTTCCAGCGCGTCGCGTCGTGCTTCGTGCAGGGCCTGGCGGACCGGCTGGCCCTGGCGCACCCACCGGC
GCTGGGCCCGGCGAGCATGGCGTTCAGCGTCCCGCGCTCGTCATGCCTTGACGGAGCGCGCGGCGAGGCGCTCGCCGTGG
CGTACGAGCTGTGCCCGTACCTGCGCTTCGCGCACTTCGTGGCGAACGCGTCCATCCTGGAAGCCTTCGATGGAGAGAGC
AACGTCCACGTGGTTGACCTCGGCATGACAATGGGCCTGAACCGCGGCCACCAGTGGCGCGCCCTGCTAGACGGCCTTGC
CACGCGGGCCGGCGGCAAGCCGGCACGCGTGCGCGTCACCGGCGCCGGCGCCGGCTTGGACACCATGAGGGCCGTCGGGC
GCGAGATCGAGGCGTACGCGGAGGAGCTCGGGATGTGCCTTGAGTTCAGGGCCGTCGACCGCACCCTGGAGAGCCTCCAC
GTCGACGACCTCTGCATCGATGCCCACGAGGCCGTGGCCATCAACAGCGTCCTGGAGCTGCACTGCGTGGTGAAGGAGAG
CCGCGGCGCGCTCAACTCGGTGCTGCAGACCATCCGAAAGCTCTCGCCGAAGGCGTTCGTGCTCGTGGAGCAGGACGCCG
GCCACAACGGGCCATTCTTCCTCGGGCGGTTCATGGAGGCGCTCCACTACTACGCCGCCTTGTTCGATGCGCTGGACGCG
GCTCTCCCGCGCTACGACGCCCGCCGCGCGCGCGTGGAGCAGTTCCACTATGGCGCCGAGATCCGCAACGTGGTCGGGTG
CGAGGGCGCGGCGCGCGTGGAGCGGCACGAGCGCGCGGACCAGTGGCGGCGCCGCATGAGCCGCGCGGGCTTCCAGTCCA
TGCCGATCAAGATGGCGGCCAAGGCGCGGGAGTGGCTGGA---GGAGAACGCCGGCGGCAGCGGGTACACGGTGGCCGAG
GAGAAGGGGTGCCTCGTGCTTGGATGGAAGGGCAAGCCCGTCATCGCCGCCTCGTGCTGGAAATGCTAGAGACACTGATC
ACAGCCTCTCGCCGGCCGGACACTTTTGCGGACCAT-TTCA---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
>chr3A_1037
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------TCATGGCAAACACAGGAAGGT
GCTTCA---ATCTGCACTAATCAAGAACTAGACTACGAGCATCCTCACTACCTCGGGATTGAGGAGGTAGCGCTCGACGG
CGTCGAGCTGGAGCTCGGCCCCCGGGCTCCCAAGGCGACCAAGGTCGACTACCTCAGCTCGCCGTACAACGCCTCATGGC
CGCCTGCGCAGGCCGACTTCGAGTCGTCGCGCGTCAGGAAGACGAAGCAGTTCCGCGACGTCCTTGAGACATGCAAGCAG
AAGGTAGAGGCCATGGAGGCTTTGGAGCACTCGC---CGCCGGTGTCCGGTGGTGGGTTCGAGGAACAAGCAGGCGAGGC
TGTGGTCGCTGTGGGTGACGTCGGGGGTGGTGGCGGTGGCAGCGGGGCTGACGGTATGCGGCTCGTGCAGCTACTTGTTG
CCTGCGCCGAGGCGGTGGCCTGTCGCGACCGCGCACAGGCTGCGGCGCTGCTGCGGGAGCTCCAGGTCGGCGCGCCAGTG
CACGGCACGGCGTTCCAGCGCGTCGCGTCGTGCTTCGTGCAGGGCCTTGCGGACCGGCTGGCCTTGGCGCACCCACCGGC
GCTGGGGCCGGCGAGCATGGCGTTCAGCGTCCCGCGGTCGTCGTGCCTTGACGGAGCTCGCGGCGAGGCGCTCGCCGTGG
CGTACGAGCTGTGCCCGTACCTGCGCTTCGCGCACTTCGTGGCGAACGCGTCCATCCTGGAAGCTTTCGATGGAGAGAGC
AACGTCCACGTGGTTGACCTCGGCATGACAATGGGCCTGAACCGCGGCCACCAGTGGCGCGCCCTGCTAGACGGCCTTGC
CACGCGGGCCGGCGGCAAGCCGGCACGCGTGCGCGTCACCGGCGTCGGCGCCCGCGTGGACACCATGAGGGCTGTCGGGC
GCGAGATCGAGGCGTACGCGGAGGAGCTCGGGATGTGCCTCGAGTTCAGGGCCGTCGACCGCACCCTGGAGAGCCTCCAC
GTCGACGACCTGTGCATCGATGCCCACGAGGCCGTCGCCATCAACAGCGTCCTGGAGCTGCACTGCGTGGTGAAGGAGAG
CCGCGGCGCGCTCAACTCCGTGCTGCAGACCATCCGCAAGCTCTCGCCCAAGGCGTTCGTGCTCGTGGAGCAGGACGCCG
GCCACAACGGGCCATTCTTCCTGGGGCGGTTCATGGAGGCGCTTCACTACTACGCGGCTCTGTTCGATGCGCTGGACGCG
GCTCTCCCGCGCTACGACGCCAGGCGTGCGCGTGTGGAGCAGTTCCACTATGGCGCCGAGATACGCAACGTGGTCGGGTG
CGAGGGCGCGGCGCGCGTGGAGCGGCACGAGCGCGCGGACCAGTGGCGGCGCCGCATGAGCCGCGCCGGCTTCCAGTCCC
TGCCGATCAAGATGGCGGCCAAGGCGCGGGAGTGGCTGGAGGAG---AAGGCCGGCGGCAGCGGGTACACGGTGGCCGAG
GAGAAGGGGTGCCTCGTGCTTGGATGGAAGGGCAAGCCCGTCATCGCCGCCTCGTGCTGGAAATGCTAGAGACACTGATC
ACAGCCTCTCGCCGGCCGGACACTTTTGCGGACCAC-TTCA---------------------------------------
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>chr3A_1123
--------------------------------------------------------------------------------
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-----------------------------------------------------------------GGTAGCGCTCGAAGG
CGTCGAGCTGGAGCTCGGCCCCCGGGCTCCCAAGGCGACCAAGGTCGACTACCTCAGCTCGCCGTACAACGCCTCATGGC
CGCCTGCGCAGGCCGACTTCGAGTCGTCGCGGGTCAGGAAGACGAAGCAGTTCCGCGACGTCCTTGAGACCTGCAAGCAG
AAGGTGGAGGCCATGGAGGCTTTGGAGCACTCGC---CGCCGGTGGCCGGTGGTGGATATGAGGAACAAGCAGGTGAGGC
TGTGGTCGCTGTAGGAGATGTCGGGGCCGGTGGCGGTGGCAGCGGGGCTGACGGCATGCGGCTCATGCAGCTTCATGTTG
CATGCGCCGAGGCGGTGGCGTGCCGCGACCGCGCACAGGCGGCGGCGCTGCTGCGCGAGCTCCAGGTCGGCGCGCCCGTG
CACGGCACGGCGTTCCAGTGCGTCGCGTCGTGCTTCCTGCAGGACCTGGCGGACCGGCTGGCCCTGGCGCACCCGCCGGC
CCTGGGCCCGGCGAGCATGGCGTTCAGTGTCTCGCGGTCGTCGTGCCTTGACGGAGCTCGCGGCGAGGCGCTCGCCGTGG
CGTACGAGCTGTGCCCGTACCTGCGCTTCGCGCACTTCGTGGCGAACGCGTCCATCCTGGAAGCCTTCGATGGAGAGAGC
AACGTCCATGTGGTTGATCTTGGCATGACAATGGGCCTGAACCGCGGCCACCAGTGGCGTCACCTGCTCGACGGCCTTGC
AACGCGGGCCGGCGGCAAGCCGGCACGCGTGCGCGTCACCGGCGTCGGCGCCCGCGTGGACACCATGAGGGCCGTCGGGC
GCGAGATCGAGGCGTACCCGGGGGAGCTCGGGATGTGCCTCGAGTTCAGGGCCATCGACCGCACCCTGGAGAGCCTCCAC
GTTGACGGTCTCTGCATCGATGCCCACGAGGCCGTCGCCATCAACAGCGTCCTGGAGCTGCCCTGCGTGGTGAAGGAGAG
CCGCAGCGCGCTCAACTCCATGCTGCAGACCATCCGCAAGCTGTCGCCCAAGGCATTCGTGCTCGTGGAACAGGACGCCG
GACACAACGGGCCATTCTTCCTCGGGCGGTTCATGGAGGCGCTCCACTACTACGCCGCCTTGTTCGATGCGCTGGACGCG
GCTCTCCCGCGCTCCGACGCCCGCCGCGCGCGCGTGGAGCAGTTCTACTATGGCGCCGAGATCCGCAACGTGGTCGGGTG
CGAGGGCGCGGCGCGCGTGGAGCGGCACGAGCGCGCGGACCAGTGGCGGCGCCGCATGAGCCGCGCGGGCTTCCAGTCCA
TGCCGATCAAGATGGCGGCCAAGGCGCGGGAGTGGCTGGA---G---AAGGCCGGCGGCAGCGGGTACACGGTGGCCGAG
GAGAAGGGGTGCCTAGTGCTTGGATGGAAGGGCAAGCCCGTCATCTCCGCCTCGTGCTGGAAATGCTAGAGACACTGATC
ACAGCCTCTCGCCGGCCGGACATTTCTGCGGACCAC-TTCAC--------------------------------------
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----------------------------------------------------------------------
>SNPs
--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S--S-------------S----------------S-----S-
-----S---S------S-----------------------------------S--S-------------S----S-----
--------S-S-----------------------------------------------S------SS-----S-------
-S----S---------------S-------S---S-S---S-----S-------------------S--------S----
------S----SS--------S----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------SS---------------S----S-S--------------------SS-------S-----SS-S
----------S---------S---------------------------------------------------S-------
---------SSS-------------------------------------S--S---------------------S-----
--S-----------------------------------------------------------------------------
---------------------------------------SS---------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------SSSSS-SSSSSSSS-------------------------
--------------------------------------------------------------------------------
---S-S---------S-S--------------------------------------------------------------
-----------------------S----S---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-S----------------------------------S-------------------------------------------
----------------------------S--------------------------------------S------------
--------------------------------------------------------------------------------
-S----------S-------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------S-------------------------------------------
----------S---------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------S--------------------------------------------------------------------
------------------------------S-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------S---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
----S--------------------------------SS-----------------------------------------
S---------------S-S-------SS----------------------------------------------------
-S-S----SSSSSSSSSSSSSSSSSSSSS---------------------------S-------------------S---
------------------------------S-------------------SSSS--------------------S-----
----------------------SSS----------------SS---------------------------SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1856
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----------------------------------------------------------------------------CCAG
TGCGTTAGACACCACT----------------------------------------------------------------
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----------------------------------------------------------------------
>reverse_3814
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-----------------------------------------------------GGTGGCACAACAGCAAGAAG-------
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----------------------------------------------------------------------
