>input_sequence_48256
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------ATGTGGAACTGC
TCTGCGCCGTCCTCTCTCTTGCTGCCCTTCAGCGACGACTACGGTACATTTCTGTCCC-CCCTGCCACGCAACTCTCTAC
GATGATCCCTCTGAAATCATGTTCTGATTTCAATTGCAGTGAAATGTGAGTCCTCTAATTCGGCGCCCGGATCCGCGGGT
TTTGACGGAATGTAAGTTGTCAAACCA-TTTGGTCTCGATGTCACT---A-----------------GTTTCCCACGTCA
AG----TGTCTCAAGGAGTTGTCCCTTCCCCGTGAGCAGAAGCAGGCTCGCCGCCGACTACGGCCATCTCTGCCACCACA
TGTCGTCGCTTCAGAGCCTTCCGGCGCCGGCTCTCTTCGCCACGCGCAGCTCCGAGAGCTATTTCGGTACGTCCTTATTT
ACTTCGTGTACATACAGTTGGGGTTTTCTCTTTGCTCACTTGTTTCTG-----ATCTGATCTCACTGCTCGCCGATGAAC
CTAGGAATGGGAGACGGTTCTGCCTACGGCGGCGATGGCAGGCCTGCTGCGTTCATGCACTTCGGCTACGCCCAGACCCA
GCCACCTACTGCTGCTACCGTACTGCTCTTTACTCTATTGTTATCATTGCCATCTTCT-----AATCCCGTGATC-----
---------------GATCGATCTGAAGATACAAAAACCGAAGGTGATGTGGTGTTTACGTCTGTTGGGGTGTTTGTTTT
TCTGTCAGCATCCTGTGAGATGGACGGCAGCAGGCGGCGAGAGCGAGACGATGGTCTGTGACGGAAGCAGCTTCAGTGGC
TCCAAGAGGCGCAAGACAACGACGACGGACAGCCGGCTGCAGGGCAGCAGCGCAAAGCCAAGAAATAC------TACAGC
AGCTGCCAAGGTGACGTCGCGTTTGCCTTCTCCCTTTTTTTATCTGCTGGATTCATAACAGGGCCGTGTGTCTGTCAGAT
A---GTAGTACACTCGAAGTGACACTAGC----TTGATCATCTGCACGGAACAAAACGATTTTGA---------------
----------------CAAAGCAGTTGCATCCATGCAGGCGCCGTGCAAGAGGAGCCAGAAGCTGGGGGACAAGATCACC
GCGCTGCAGCAGCTGGTCTCCCCCTACGGCAAGGTAAAACAA--ATGTGCATGCTACAGTTTTCTTGGCTCGCTCTCCAT
GAAGTGGCCTGAACTGAAGCCGCTCCTGAACACGATCGATCCATGCACATGTTGCAGACGGACACCGCGTCGGTTCTCCA
CGAGGCCGCCGCCTGCATCAGGAACCTTCACGACCAAATCCAGGTGACTGC-GCGCGCTAGACCCGCATCGTCA------
ACCGGCGCCTGAGTGTCTCGTCATTTCTGCATGTCACACGCAGTGTCTCACCGGTGCA--TTTTTCCTGTCTCTTGCCGC
AGATCCTGGCCGCGCCCTACCCTGGAGAGAGCGGATCCTCCTCGCCGCCGTCGTCGTCGCGGGATGCCGGAGAAGAGCCC
GCGACGGGCCTGCGCCGGCGTGGCCTCTGCGTGGCCCCGCTGTCGCCGGCCGTCGTGAGCCTCGTGTCCGGCGCCGCGCG
TGAGAGTGACCACGGCCGCGCGCACGCCGACGTGGGGGGTGCTTGGTTCGCTGCCCTGTAG-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------------
>chr4A_1_TraesCS4A01G100700
TTGGGACTAAATGAAGAAGACTCTCAAAGAAAGTCTTTTTGGAACTTTTCCAACAATGCCCCTCCATGCACTCATTGGTC
CGCCATCCCATGGTGTTGTGTGATTGTTATTTTTCTATATATTAGGGGGCAACATGGTCATTTAATAATCTCTAGAAAGG
GACCAGGGACTTTTTAGTCTCTGGAAACAAACAGAAAGAGACTTTTTAGGCATTAGGGACTTTTTAATTGGGACTAGAAA
AAGTCTTAGGACAAGAGAACCAAACACCACCTTACTTACGGGAGGGGTGGTGGCCCTGCTATTTAAGGATGATGAGGTAT
AATGGCCTTCTCCATCCCGTCTTCCCGTGCGCTCCTTTGATTTCCTTGGCGTCTCTCCTCTCTCTCTCACGTGTTTATTT
TGGCAACCTACGTGCTACTACTACTGC---AATTCCAGGAGAAGAGTGAAAACGGCAGGAGACGAAGAGGGGAAGGCAAA
AACAGCCCACGCATTTATTTTTATATAGGTGCACCTCGGATTACTACTTAACTAGCGGAGTAGTTGGACTGAACTTGTAG
CAGAGCGGCTTCTCTCCTCTTCTCTTTTCTTCTACCCATGAGCCTTACGGTTTCATCCTTCTTCCTTTCCTTGTGCATTG
CTGAGCGACGATGATGAGCAGGTTGTTTATTACCACTACTGTTTTCTTCATCTTGTTGTGGTGGTGGATTCTGAATTTTC
TTCTTTCTTCCTCTTCCACTTCTCGTGCGGTTTCTGAATCTTGTAATCGAGTTTTTTTTTTTAATAT-----TTTGTCTG
GTGAATTACCGTGT---------CGTTCATATTGCTACTCCTTTCTGCCGGA---AGTTCGTGTCCTCGAGCTGTAGATC
ACCAGCAAAAAAGTTGGAATCTCTCGTGCCGTGTGGTTCTTGTCTCGACTCTTCTTTT--------CGGAACTGAATGTG
TCGTCGTTTCCGTTCCAGGTGATGAAATCCTGTGAGCTGCTGGTAGATCGGGTCTGATCGCAACTACAATGTGGAACTGC
TCTGCGCCGTCCTCTCTCTTGCTGCCCTTCAGCGACGACTACGGTACATTTCTGTCCC-CCCTGCCACGCAACTCTCTAC
GATGATCCCTCTGAAATCATGTTCTGATTTCAATTGCAGTGAAATGTGAGTCCTCTAATTCGGCGCCCGGATCCGCGGGT
TTTGACGGAATGTAAGTTGTCAAACCA-TTTGGTCTCGATGTCACT---A-----------------GTTTCCCACGTCA
AG----TGTCTCAAGGAGTTGTCCCTTCCCCGTGAGCAGAAGCAGGCTCGCCGCCGACTACGGCCATCTCTGCCACCACA
TGTCGTCGCTTCAGAGCCTTCCGGCGCCGGCTCTCTTCGCCACGCGCAGCTCCGAGAGCTATTTCGGTACGTCCTTATTT
ACTTCGTGTACATACAGTTGGGGTTTTCTCTTTGCTCACTTGTTTCTG-----ATCTGATCTCACTGCTCGCCGATGAAC
CTAGGAATGGGAGACGGTTCTGCCTACGGCGGCGATGGCAGGCCTGCTGCGTTCATGCACTTCGGCTACGCCCAGACCCA
GCCACCTACTGCTGCTACCGTACTGCTCTTTACTCTATTGTTATCATTGCCATCTTCT-----AATCCCGTGATC-----
---------------GATCGATCTGAAGATACAAAAACCGAAGGTGATGTGGTGTTTACGTCTGTTGGGGTGTTTGTTTT
TCTGTCAGCATCCTGTGAGATGGACGGCAGCAGGCGGCGAGAGCGAGACGATGGTCTGTGACGGAAGCAGCTTCAGTGGC
TCCAAGAGGCGCAAGACAACGACGACGGACAGCCGGCTGCAGGGCAGCAGCGCAAAGCCAAGAAATAC------TACAGC
AGCTGCCAAGGTGACGTCGCGTTTGCCTTCTCCCTTTTTTTATCTGCTGGATTCATAACAGGGCCGTGTGTCTGTCAGAT
A---GTAGTACACTCGAAGTGACACTAGC----TTGATCATCTGCACGGAACAAAACGATTTTGA---------------
----------------CAAAGCAGTTGCATCCATGCAGGCGCCGTGCAAGAGGAGCCAGAAGCTGGGGGACAAGATCACC
GCGCTGCAGCAGCTGGTCTCCCCCTACGGCAAGGTAAAACAA--ATGTGCATGCTACAGTTTTCTTGGCTCGCTCTCCAT
GAAGTGGCCTGAACTGAAGCCGCTCCTGAACACGATCGATCCATGCACATGTTGCAGACGGACACCGCGTCGGTTCTCCA
CGAGGCCGCCGCCTGCATCAGGAACCTTCACGACCAAATCCAGGTGACTGC-GCGCGCTAGACCCGCATCGTCA------
ACCGGCGCCTGAGTGTCTCGTCATTTCTGCATGTCACACGCAGTGTCTCACCGGTGCA--TTTTTCCTGTCTCTTGCCGC
AGATCCTGGCCGCGCCCTACCCTGGAGAGAGCGGATCCTCCTCGCCGCCGTCGTCGTCGCGGGATGCCGGAGAAGAGCCC
GCGACGGGCCTGCGCCGGCGTGGCCTCTGCGTGGCCCCGCTGTCGCCGGCCGTCGTGAGCCTCGTGTCCGGCGCCGCGCG
TGAGAGTGACCACGGCCGCGCGCACGCCGACGTGGGGGGTGCTTGGTTCGCTGCCCTGTAGCTCAACTGAAGAA---GGT
TACGTTGGT-TAGAGTCTATATGTAGATGAGCGGTACGGGACACGACCAGATAATCGTCCCCGCGTCCTTCTATGACAAA
TTTGCAATGCTAGCTAGCTACGTAC----TAGAAGCCTAGAATAACTTCACTGG--------------CAAAAAGAGTAT
TATT-AAGCTCCTACGGATATATATCTAGCTTCATCGATAAATACAGGCTCTAGTTTTATTCTCATGATTATATTATATA
CCAGTACCATGCAAACCTGGACTTCTTTATGTTATTTGGCAGTCTAGTAACGCTATCTG-TTAATCTCTTCCGCTTAGTT
CCTCAAAAATAAATATTAACTTCTTCCATTAGTGAGTGACGCAAGGTCTAAGGAATTTGCAATTGGGTTTGACCCCCTTT
TTTCTA------------TTTTTTATTTATTTGTTTTAAAGTCAAGAACTCTTTTCACCTTTTCCATTTGTTTGCTTGAA
ATGTCGTGCAAATCTTGATTGTAGGTTGTTTTATTGCACACGCACCGTGTTGCGTCGTCCGTCTGCTGTCTACTTTTCGG
CTTGCTCGCGTGTGAATCTTCTATTCAGGGCCGGTCCTGAGATTTTGGGGGCCCGGGGCGAAACTACAATCCGAGGCCTT
TCGGGGCCCTTAATATAAATGCCTAATTAATAACCATCATATATACATATAATTTCTATCAAAGAACTAATTAAGAGCGT
CCAAAATGATTGTGCATATCAAATATGTATTACATATTACCTTCAAAATTTTCTTCTAACGTTCTGAGATGCAAAATCAC
TAACGATAGTATCAATGTCAATTTCATCAACCAAAATTTTCTCGATGCATAAAGTTGCCAAGCCATTTAACCTCTCTTGC
GACATTGTAGATCTCAAGTAGTTCTTCAACAATTTCAACTTCGAAAAACTTCTTTCAGCCGATGCCACAGTAACAGGCAT
AGTAAAGAAAATCCGATATGCAATAGCAATATTTGGATAACAATCTGCTTCCCTTGC
>chr4D_279
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------CGGGAGGGGTGGTGGCCCTGCTATTTAAGGATGATGAGGTAT
AATGGCCTTCTCCATCCCGTGTTCCCGTGAGCTCCTTTGATTTCCTTGGCGTCTCTCCTCTCTCTC--ACGTGTTTATTT
TGGCAAGCTACGTACTACTACTACTGCTGCAATTCCAGGAGAAGAGTGAAAACGGCAGGAGACGAAGAGGGGAAGGCAAA
AGCAACCCACGCATTTA----TATATAGGTGCACCTCGGACTACTACTTAATTAGCGGAGTAGTTGGAATGAACTGCTAG
CAGAGCGGCTTCTCTCCTCTTCTCTTCTCCTCTACACATGAGCCTTACGGTTTCATCCTTCTTCCTCTCCTTCTGCATTG
CAGAGCGACGTTGAGGAGCAGGTTGTTTATTAG------TGTTTTCTTCATC---TTGTTGTGGTGGATTCTGAATCTTC
TTCTTTCTTCCTCTTCCACTTCTCGTGCGGTT--TGAATCTTGTAGGG------TTTTTTTAAATAT-----TTTTTCTG
GTCAACAACCA-GT---------TGTTCATATTGCTCTC-----------GA---AGTTCGTGTCCCCGAGCTGTAGATC
ACCAGAATAAAGT-TGGAA--TCTCGTACCGTGTGGTTCATGTTTCGACTCTTCTTTTTGCCTCACCGGAACTGAATGTG
TCTTCGCTTCCGTTCCAGGTGATGAAATCCTGCGAGCTGCTGCCAGATCGAGTCTGATCGCAACCACAATGTGGAACTGC
TCTGCGCCGTCCCCGCTCTTGCTGCCCTTCAGCGACGACTACGGTGCGTTTCACGTTCTCCCTGCCACGCGGTTCTCTGT
GATAATCTCTCTGAAATCATCTTCTGTTTCCAATTGCAGTGAAATGTGAATCCTCCAGTTCGGCGCCCGGATCCGCGGGT
TTCGACGGAATGTAAGTTGTCAAACCTGTCTGGGCTCCATATTACT---ACCACAGGAGTCTCCATGGTTACCCGCGTGA
AG----TGGCTGATGGACTTGTTCCTTCCCCGTGAGCAGCAGGA---TCGCCGCCGACTACGGCCATCTCTGCCACCACA
TGTCGTCGCTTCAGAGCCTTCCGGCGCCGGCTCTCTTCGCCACGCGCAGTTCCGAGAGCTATTTCGGTACGCCCTTATTT
ACTTCGTGTACATACAGTTGGGGTTTTCTCTTTGCTTACTTGTTTCTGCTCTGATCTGATCTCGCTGCTCGCCGATGAAC
CTAGGAATGGGAGACGGTTCTGCCTACGGCGGCGACGGCAGGCCTGCTGCGTTCATGCACTTCGGCTACGCCCAGACCCA
GCCACCCACTGCTGCCACCGTACTGCTCTTTACTCTATTATTATTATTGCCATCTTCTCTTCTAATCCCGTGATC-----
---------------GACCGATCTCAAGATACAAAAACCGAAGGTGATGTGGTGTTTACGTTTGTTGGCATGTTTGTTTT
TCTGTCAGCATCCTGTGAGATGGACGGCAGCAGGCGGCGAGAGCGAGCCGGTGGTCTGTGACGGAAGCAGCTTCAGTGGC
TCCAAGAGGCGCAAGACAACGACGACGGACAGCCGGCTGCAGGGCAGCAACGCAAAGCCAAGAAATAC------TACAGC
AGCTGCCAAGGTGACGTTGCGTTTGCCTTGTCCCCTTTTTTATCTGCTGGATTCATAACAGGGCCGTGTGTCTGTCAGAC
------AGTACACTTGAAGTGAAACTAGCTAGCTTGATCAGCTGCACGGAACAAGACGATTTTGA---------------
----------------CAAAGCAGTTGCATCCATGCAGGCGCCGTGCAAGAGGAGCCAGAAGCTGGGGGACAAGATCACC
GCGCTGCAGCAGCTGGTCTCCCCCTACGGCAAGGTAAAAAAA--GTGTGCATGCTACCGTTTTCTTG----GCTCTCCAT
GAAGTAGC-----CTGAAGCCGCTCCTGAACACGATCGATCCATGCACATCTTGCAGACGGACACCGCGTCGGTTCTCCA
CGAGGCCGCCGCCTGCATCAGGAACCTCCACGACCAAATCCAGGTGACCGCCGCGCGCTAGACCCGCATCGTCA------
ACCGGCGCCTGAGTGTCTCGTCATTTCTGCATGTCACACGCGGTGTCTCACCGGTGCATTTTTTTCCTGTCTCTTGCCGC
AGATCCTGGCCGCGCCCTACCCCGGAGAGAGC---TCCTCCTCGCCGCTGCCGTCGTCGCGGGATGCCGGAGAAGAGCCC
GCGACGGGCCTGCGCCGGCGTGGCCTCTGCGTGGCCCCGCTGTCGCCGGCCGTCGTGAGCCTCGTGTCCGGCGCCGCGCG
TGAGCGTGACCACGGCCGCGCTCACGCCGACGTCGGGGGTGCTTGGTTCGCTGCTCTGTAGCTCAACTGATGAAGAAGAT
TACGTTGGT-TAGAGTCTATGTGTAGATGAACGGTACGGGA----ACCAGATAATCGTCACCGCGTCCTTCTATGACAAA
TTCACAATGCTAGCTAGCTCACGCCGAAGTAGAAGCCTAGAATAACTTCACTGGTGAAACGTCACTGGCAAAAAGAGAAT
TGTT-AAGCTCCTACGGATATATATCTAGTTTCATGGATAAATACAGGCTCTAGTTTTATTCTCATGATTATATTATATA
CGAGTACCATGCAAACCTGGACTTCTTTATGTTATTTGGCAGTCTAGTAACGCTATCTGTTTAATCTCTTCCGCTTAGTT
CCTCAAAAATAAATATCAACTTCTTCCATTAGTGAGTGACGCAAGGTCTAAGGAATTTGCAATTGGGTTTGACCCCTTTT
TTCTATTTTTTATTTCTTTTCTTTATTTATTTGTTTTAAATTCAAGAACTCTTTTCACTTTTTCCATTTGTTTGCTTGAA
ATGTCGTGAAAATCTTGATTGTAGGTTGTTTTGTTGCGCGCGCACCGTGTTGCGTCGTCCGTCTGGTGTCTACTTGTCGG
CTTGCTCGCGCCTGAATCTT------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------
>chr4B_692
--------------------------------------------------------------------------------
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------------------------------------------------------GTTGTTGTGCTGGATTGTGAATCTTC
TTCTTTCTTCCTCGTCCACTTTTCGTGCCGTTTCTGAATCTTGTAGTA------TTATGTTATTTATATATATTTTTCTC
GTGAAAAAACACCATCTTATTTACGTTCTTATTACTATGTTGCCGGGTCTTTCATAGTTCGTGTCCTCAAGTTGTAGATC
ACCAGAATAAAGC-TGGAATTTCTCGTGCCGTGTGGTTCATGTTTGGGCTCTTCATTTTGCCTCACCGGAACTGAATGTG
TCGTCGTTTCCGTTCCAGGTGATGAAATCCTGGGAGCTGCTGGCAGATCGAGTCTGATCGCAACCACAATGTGGAACTGC
TCGGCGCCGTCCCCGCTCTTGCTGCCCTTGAGCGACGACTACGGTACATTTCCGTG-C-CCCCGCCACGCGATTCTCTAC
GATGATGTCTCTGAAATCATGTTCTGTTTTCAATTGCAGTGAAATGTGAATCCTCGAATTCTGCGCCCGGAGCCGCGGGT
TTCGACGGAATGTAAGTTATCAAACCG-TTTGGTCCCGATACTAACTGCA-----------------GTTTCCCGCGTGA
ACTGGCTGGCTGAAGCAATTGCTCCTTCCCCGTGAGCAGAAGCAGGCTCGCCGCCGACTATGGCCATCTCTGCCACCACA
TGTCGTCGCTTCAGAGCCTTCCGGCGCCGGCTCTCTTCGCCACGCGCAGTTCCGAGAGCTTTTTCGGTACGTCCTTATTT
ACTTCCTGTTAGA---------GTTTTCTCTTTGCTTACTTGTTTCTGATCTGATCT-----CACTGCCCGCCGGTGAAC
CTAGGAATGGGAGACGGTTCTGCCTACGGCGGCGACGGTAGGCCTGCTGCGTTCATGCACTTCGGCTACACCCAGGACCA
GCCACCTACTGCTGCTACCGTACTGCCCTTTACTCTATTATTATCATTGCCATTTTCTTTTCTTTTTTTTTCGAAAAAAG
GGGGAAAAAAAGGAAGATCGATCTGAAGATACAAAAACCGAAGGTGATGTGGCGTTTACGTCTGTTAGGGTGTTTGTTTT
TCTGTCAGCATCCTGTGAGATGGACGGCAGCAGGCGGCGAGA------CGATGGTCTGTGACGGAAGCAGCTTCAGTGGC
TCCAAGAGGCGCAAGACAACGACGACGGACAGCCGGCTGCAGGGCAGCAGCGCAAAGCCAAGGAATACTACTACTACAGC
AGCTGCCAAGGTGACGTTGCGTTTGCCTTCTCCCTTTTTTTATCTGCTGGATTCATAACAGGGCCGTGTGTCTGTCGGAT
ACTCGTAGTACACTTGAAGTGACACTGGG----TTGATCAGCTGCACGGAATAAAACGATTTTGCACGGCGCAACCGGGT
GACACGGATTTGTGACCAAAACAGTTGCATCCATGCAGGCACCGTGCAAGAGGAGCCAGAAGCTGGGGGACAAGATCACC
GCGCTCCAGCAGCTGGTTTCCCCCTACGGCAAGGTAAAAAAAAAATGTGCATGCTGCCGTTTTCTTG----GTTCTCCAT
GAAGTAGC-----CCGAAGCCACTCCTGAACACGATCCCTA----CACATCTTGCAGACGGACACCGCGTCGGTTCTCCA
CGAGGCAGCCGCTTGCATCAGGAACCTTCACGACCAAATTCAGGTGACCAAAAGTTCCAAATGAATAAATAAATCAGGTG
ACCAGCGCCTGAATGTTTCGTCATTTCTGCATGTCACACGCGGTGCA--------------TTTTCCTATCGCTTGCTGC
AGATCCTGGCCGCGCCCTACCCTGGAGAGAGC---TCCTC------GCCGTCGTCGTCGCGGGATGCCGGAGAAGAGCCA
ACGACAGGTCTGCGCCGGCGTGGCCTCTGCGTGGCCCCGCTGTCGCCGGCCGTTGTGAGCCTCGTGTCCGGCGCCGCCCG
TGCCCGT------GGCAGCGCTCATGCCGACGTGGGGGGTGCTTGGTTCGCTGCTCTGTAGCTCAACTGAAGAA---GAT
TACGTTGGTATAGAGTCTATATGTAGATGAACGGTACGGGACACGACCAGATAATCGTCACCACGTCCTTCCATGACAAA
TTTACAATGCTAGCTAGTTACTCCTACGGACAT--CCTAGAATAACTTCACTGGTGAAACGTCACTGGCAAAAAGAGAAT
TGTTAAAGCTCCTACGGATAT----CTAGTTTCATGGATAAATACAGGCTCTAGTTTTATTCTCATG-----ATTATATA
CGAGTACCATGCAAACCTGGACTTCTTTATGCTATTTGGCA---------------------------------------
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---------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------------
--------------------S--------S------------------------------------SS------------
------S------S------------------------------------------------------------------
-S--S------------SSSS-------------------S----------S----------------S------SS---
--------------------------S--S-----S------------------------------S-----S-------
-S--------S---S-----------------SSSSSSS-------------SS-----S----------------S---
---------------------------------------------S-SSSSSSS-------S-------------S----
-----SS---SS-------------------------SSSSSSSSS-S-S------------------------------
-----S-S---SSS------S------------------S---S------------------------------------
--------------------------------S----------S------S-------------S---------------
------------S-S-------------------------------------S--SS-------------S-S-------
-------S------------------S----------------------S-----S------------------------
--S-----------------------S-------------S-S-------------------------------S---S-
--------S--S-----S----S---------------------------------------------------------
-------------------------------------------------S------------------------------
------------------------------------S-------------------------------------------
-----------------------------------S--------------------------------------------
---------------------------------------S----------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------S--------------------------------
--------------------------------------------------------------------------------
-----------------S--------------------------------------------------------------
--------------S-------------------------S---------------------------------------
--------------------------------------------------------------------------------
---------------------------------------S-----------------S---------SSSS---------
-----S--SSSSS-------------------------------------S-----------------------------
------------------------------------------------S-------------------------------
-----------------------------------------S--------------------------------------
--------------------------------SSS---------------------------------------------
--------------------------------------------------------------------------------
----S----------------S--------------------------------S-----------------------S-
------------------------------S----------------------------S--------------------
---S-----------------SSS-----------------------------------------------------S--
-S---------------------------S-----S--------------------------------------------
-S------------------------------------------------------------------------------
----------------S-----------------------------------------------------------S---
--SSSS--------------S-------------------S-----------------S---------------------
--------S-----------------------S----S-S-------------------------S---------S----
----------SS--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_79
-----------------------------------------------------------CCCTCCATGCACTCATTGGT-
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>reverse_1292
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------CAAGGAGTTGTCCCTTCCCC-------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---------------------------------------------------------
>forward_1025
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------GATCGGGTCTGATCGCAACT---------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_2442
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----------------------------------------AGTGTCTCACCGGTGCATTT-------------------
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---------------------------------------------------------
>forward_2246
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------------------------GGCTCGCTCTCCAT
GAAGTG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------
>reverse_3648
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------ACTTCTTTCAGCCGATGCCA-------------
---------------------------------------------------------
